diff --git "a/processed_dataset.json" "b/processed_dataset.json"
--- "a/processed_dataset.json"
+++ "b/processed_dataset.json"
@@ -1,31826 +1,3 @@
-[
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--RpII18\n  CG2091--RpII18\n  Hsp22--RpII18\n  RpII18--Taf10b\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--RpII18\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n- Network density: approximately 0.28\n- Hub proteins (highly connected): CG31121, nito\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG13458--CG31121\n  CG13458--nito\n  CG31121--CG5522\n  CG31121--Cfp1\n  CG31121--Hsc70-5\n  CG31121--RpL14\n  CG31121--aru\n  CG31121--nito\n  CG5522--aru\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum\n\nTWO-HYBRID INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Mlp84B--nesd\n  pav--tum\n  pav--tum\n  pav--tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--Dsor1\n  14-3-3epsilon--nesd\n  14-3-3epsilon--phl\n  14-3-3zeta--Dsor1\n  14-3-3zeta--nesd\n  14-3-3zeta--phl\n  Dsor1--nesd\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  nesd--pav\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  phl--tum\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--phl\n  Gl--nesd\n  nesd--pav\n  pav--tum\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  nesd--pav\n  nesd--phl\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n  pav--tum\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n  pav--tum\n\nNETWORK SUMMARY: 9 proteins, 53 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm\n\nTWO-HYBRID INTERACTIONS:\n  CG12773--Cht9\n  CG14968--Cht9\n  Cht9--RpL29\n  Cht9--Rtnl1\n  Cht9--Tpi\n  Cht9--cher\n  Cht9--crm\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Tpi\n  Rtnl1--Tpi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tpi--Tpi\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Atpalpha--Galk\n  CG11327--Galk\n  CG4835--Galk\n  CG9986--Galk\n  Galk--intr\n  Galk--mbc\n  Galk--rdx\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galk--Pp2B-14D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A\n\nTWO-HYBRID INTERACTIONS:\n  FANCC--FANCC\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n  MAGED1--UNC5A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  MAGED1--UNC5A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DAPK1--UNC5A\n  FANCC--UNC5A\n  FANCC--UNC5A\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--UNC5A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX39A--DDX39A\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A\n\nTWO-HYBRID INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--DDX39A\n  FANCC--FANCC\n  FANCC--UNC5A\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n  MAGED1--UNC5A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  MAGED1--UNC5A\n  NTN1--UNC5A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--UNC5A\n  FANCC--UNC5A\n  FANCC--UNC5A\n  MAGED1--UNC5A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--UNC5A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX39A--DDX39A\n\nNETWORK SUMMARY: 6 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10749, CG13510, CG14210, Fas2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG13510, CG14210, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG13510\n  CG10749--CG14210\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10749--Fas2\n  CG10749--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1\n\nTWO-HYBRID INTERACTIONS:\n  CG10133--CG10133\n  CG10750--CG11656\n  CG10750--CG12985\n  CG10750--Dysb\n  CG10750--Nup62\n  CG10750--Pglym87\n  CG10750--mtacp1\n  CG12985--CG12985\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10133--CG10750\n  CG10133--CG6543\n  CG10750--CG6543\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: sala\n\nPredict the interactions for sala:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10750--sala"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: RpS26, dimm, eIF-2gamma, nos, osk, vls\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nos--osk\n  nos--osk\n  nos--vls\n  osk--vls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dimm--dimm\n  osk--vls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  nos--osk\n\nNETWORK SUMMARY: 6 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: RpS26, dimm, eIF-2gamma, nos, osk, vls\n\nTWO-HYBRID INTERACTIONS:\n  RpS26--vls\n  dimm--vls\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nos--osk\n  nos--osk\n  nos--vls\n  nos--vls\n  osk--vls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dimm--dimm\n  eIF-2gamma--vls\n  osk--vls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  nos--osk\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG44001, Elp1, jbug\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG30393\n\nPredict the interactions for CG30393:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG30393--CG44001\n  CG30393--Elp1\n  CG30393--jbug"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10237, CG2254, CG34205, CG6180, CG7979, CG9825, Pli, Tom20, cbs\n\nTWO-HYBRID INTERACTIONS:\n  CG10237--CG6180\n  CG10237--CG9825\n  CG10237--cbs\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10237--CG2254\n  CG10237--CG34205\n  CG10237--CG7979\n  CG10237--Pli\n  CG34205--CG7979\n  CG34205--Pli\n  CG7979--Pli\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pli--Pli\n\nPCA INTERACTIONS:\n  CG2254--CG2254\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10237--Tom20\n  CG6180--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: CG9796\n\nPredict the interactions for CG9796:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10237--CG9796"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG9821, Dcp1, Mst84Dc, cdc2\n\nTWO-HYBRID INTERACTIONS:\n  CG9821--Dcp1\n  CG9821--Mst84Dc\n  CG9821--cdc2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9821, Dcp1, Mst84Dc, cdc2\n\nTWO-HYBRID INTERACTIONS:\n  CG9821--Dcp1\n  CG9821--Mst84Dc\n  CG9821--cdc2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG17328\n  CG17328--CG30324\n  CG17328--D\n  CG17328--Hr78\n  CG17328--RpL3\n  CG17328--cg\n  CG17328--hale\n  CG30324--hale\n  CG32846--hale\n  CycK--D\n  CycK--hale\n  D--D\n  D--D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG17328\n  CG11534--CG32846\n  CG17328--CG30324\n  CG17328--CG32846\n  CG17328--CycK\n  CG17328--D\n  CG17328--Hr78\n  CG17328--RpL3\n  CG17328--cg\n  CG17328--hale\n  CG30324--hale\n  CG32846--D\n  CG32846--hale\n  CycK--D\n  CycK--hale\n  D--D\n  D--D\n  RpL3--hale\n  hale--hale\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11134, CG30089, Su(dx), yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--Su(dx)\n  CG11134--yki\n  CG30089--yki\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: l(3)L1231\n\nPredict the interactions for l(3)L1231:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11134--l(3)L1231"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11340, Peb, PebII, a6, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11340--Peb\n  CG11340--PebII\n  CG11340--a6\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11340, Peb, PebII, a6, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11340--Peb\n  CG11340--PebII\n  CG11340--a6\n  CG11340--betaggt-II\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG14647--CG14647\n  CG14647--CG30417\n  CG2909--CG30417\n  CG30417--CG6770\n  CG30417--CG7229\n  CG30417--CG7229\n  CG30417--amos\n  CG30417--fs(1)h\n  CG30417--inv\n  CG30417--rdx\n  CG30417--sa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi\n- Network density: approximately 0.51\n- Hub proteins (highly connected): CG1092, Fer1HCH\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--CG13397\n  CG1092--CG9372\n  CG1092--CG9947\n  CG1092--Cnx99A\n  CG1092--Crc\n  CG1092--Fer1HCH\n  CG1092--Gp93\n  CG1092--PH4alphaEFB\n  CG1092--Pdi\n  CG13397--CG9372\n  CG13397--Cnx99A\n  CG13397--Fer1HCH\n  CG9947--Cnx99A\n  CG9947--Fer1HCH\n  CG9947--Gp93\n  Cnx99A--Gp93\n  Crc--Gp93\n  Crc--Pdi\n  Fer1HCH--Gp93\n  Fer1HCH--PH4alphaEFB\n  Fer1HCH--Pdi\n  Gp93--Pdi\n  PH4alphaEFB--Pdi\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--bab1\n  CG17612--ttk\n  CG32121--bab1\n  Snr1--bab1\n  Trl--Trl\n  Trl--bab1\n  Trl--ttk\n  bab1--ttk\n  bab1--vari\n\nCO-LOCALIZATION INTERACTIONS:\n  Trl--Trl\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Snr1--Trl\n  Trl--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hts--hts\n  ttk--ttk\n\nPCA INTERACTIONS:\n  CG32121--bab1\n  Trl--Ubx\n  Ubx--bab1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  hts--hts\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--bab1\n  CG17612--ttk\n  CG32121--bab1\n  CG32121--ttk\n  CG8907--bab1\n  Snr1--bab1\n  Trl--Trl\n  Trl--bab1\n  Trl--ttk\n  Trl--ttk\n  Trl--ttk\n  bab1--bab1\n  bab1--hts\n  bab1--ttk\n  bab1--vari\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nCO-LOCALIZATION INTERACTIONS:\n  Trl--Trl\n  hts--hts\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trl--Ubx\n  Trl--Ubx\n  Trl--Ubx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Trl--Trl\n  Trl--ttk\n  hts--hts\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  Trl--ttk\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Snr1--Trl\n  Trl--ttk\n\nPCA INTERACTIONS:\n  CG32121--bab1\n  CG32121--ttk\n  Trl--Ubx\n  Ubx--bab1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  hts--hts\n\nNETWORK SUMMARY: 10 proteins, 44 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11534, CG12985, CG8134\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG8134\n  CG12985--CG12985\n  CG12985--CG8134\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: Rab5\n\nPredict the interactions for Rab5:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG8134--Rab5"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: BEAF-32, Eb1, GEFmeso, Kebab, Tab2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kebab--Tab2\n\nPCA INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eb1--Kebab\n\nCO-FRACTIONATION INTERACTIONS:\n  BEAF-32--BEAF-32\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BEAF-32--BEAF-32\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BEAF-32, Eb1, GEFmeso, Kebab, Tab2\n\nTWO-HYBRID INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--Kebab\n  Eb1--Eb1\n  Eb1--Eb1\n  GEFmeso--Kebab\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kebab--Tab2\n  Tab2--Tab2\n\nPCA INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Kebab\n\nCO-FRACTIONATION INTERACTIONS:\n  BEAF-32--BEAF-32\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BEAF-32--BEAF-32\n\nNETWORK SUMMARY: 5 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr\n- Network density: approximately 0.48\n- Hub proteins (highly connected): CG11300, lwr\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG11300--CG12491\n  CG11300--CG14074\n  CG11300--CG2852\n  CG11300--CG31029\n  CG11300--ball\n  CG11300--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  lwr--lwr\n  lwr--lwr\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG8191\n  CG13747--CG8191\n  CG17364--CG8191\n  CG5151--CG8191\n  CG7778--CG8191\n  CG8191--kra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG10914, CG15676\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10914\n  CG10914--CG15631\n  CG10914--CG15676\n  CG10914--CG3528\n  CG10914--CG7009\n  CG10914--GstE1\n  CG15631--CG15676\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG10219, Tapdelta\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10219--CG12158\n  CG10219--CG1416\n  CG10219--CG17826\n  CG10219--CG31775\n  CG10219--CG5172\n  CG10219--Obp57c\n  CG10219--Tapdelta\n  CG10219--Tim9a\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1416--Tapdelta\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG10219--smg\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A\n\nTWO-HYBRID INTERACTIONS:\n  CG12379--CG2091\n  CG2091--Ef1gamma\n  CG2091--Hs3st-B\n  CG2091--Msp300\n  CG2091--Rgl\n  CG2091--RpII18\n  CG2091--RpS3A\n\nNETWORK SUMMARY: 8 proteins, 7 interactions\n\nNew protein to integrate: homer\n\nPredict the interactions for homer:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG2091--homer"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A\n\nTWO-HYBRID INTERACTIONS:\n  ANK1--RHAG\n  CREB3L3--RHAG\n  RHAG--TEX29\n  RHAG--UNC93A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERGIC3--ERGIC3\n  LMNA--LMNA\n\nFRET INTERACTIONS:\n  CREB3L3--CREB3L3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nCO-LOCALIZATION INTERACTIONS:\n  LMNA--TP53\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  RHAG--TP53\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n\nNETWORK SUMMARY: 9 proteins, 24 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A\n\nTWO-HYBRID INTERACTIONS:\n  ANK1--RHAG\n  CREB3L3--RHAG\n  ERGIC3--RHAG\n  FAM209A--RHAG\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--RHAG\n  RHAG--TEX29\n  RHAG--UNC93A\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ANK1--RHAG\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERGIC3--ERGIC3\n  LMNA--LMNA\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nFRET INTERACTIONS:\n  CREB3L3--CREB3L3\n  TP53--TP53\n  TP53--TP53\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--TP53\n  LMNA--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nCO-LOCALIZATION INTERACTIONS:\n  LMNA--TP53\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  RHAG--TP53\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n\nNETWORK SUMMARY: 9 proteins, 61 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG9577--CG9577\n  CG9577--Traf6\n  CG9577--Trs31\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Leash\n  CG9577--Rab6\n  CG9577--Su(P)\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG4447--Tom20\n  CG9577--Tom20\n  Tom20--Tom20\n  Tom20--zuc\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG4447--CG9577\n  CG9577--CG9577\n  CG9577--Traf6\n  CG9577--Trs31\n  Leash--Leash\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Leash\n  CG9577--Rab6\n  CG9577--Su(P)\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG4447--Tom20\n  CG9577--Tom20\n  CG9577--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14968, CG16817, Chd64, Cht9\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14968--CG16817\n  CG14968--Chd64\n  CG16817--Chd64\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14968, CG16817, Chd64, Cht9\n\nTWO-HYBRID INTERACTIONS:\n  CG14968--Cht9\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14968--CG16817\n  CG14968--Chd64\n  CG16817--Chd64\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG10508--CG14840\n  CG10508--CG16721\n  CG10508--CG9213\n  CG10508--CycE\n  CG10508--Pp2B-14D\n  CG10508--Prm\n  CG10508--RhoGAP92B\n  CG10508--Tektin-A\n  CG10508--Traf-like\n  CG16721--Prm\n  Tektin-A--Traf-like\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10032, CG10205, CG17019, rdgA, srl\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG17019\n  CG10205--CG17019\n  CG17019--rdgA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG17019--srl\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG10205, CG17019, rdgA, srl\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG17019\n  CG10205--CG17019\n  CG17019--rdgA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG17019--srl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG17019--srl\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Fas2, Pkcdelta, Pvf1\n\nTWO-HYBRID INTERACTIONS:\n  Pkcdelta--Pvf1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fas2--Pkcdelta\n  Fas2--Pkcdelta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 3 proteins, 4 interactions\n\nNew protein to integrate: robl\n\nPredict the interactions for robl:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Pkcdelta--robl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG1126, Klc\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--CG14926\n  CG1126--CG32819\n  CG1126--CycK\n  CG1126--CycK\n  CG1126--Irbp\n  CG1126--Klc\n  CG1126--dnd\n  CG1126--fbl\n  CG1126--fbl\n  Klc--Klc\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n\nTWO-HYBRID INTERACTIONS:\n  C15--Tango10\n  Fer3HCH--Fer3HCH\n  Fer3HCH--Tango10\n  Su(var)2-10--Tango10\n  Su(var)2-10--spn-A\n  Tango10--cup\n  Tango10--vari\n  spn-A--spn-A\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n\nTWO-HYBRID INTERACTIONS:\n  C15--Tango10\n  CG1041--Tango10\n  CG10979--Tango10\n  Cpr64Ad--Tango10\n  Fer3HCH--Fer3HCH\n  Fer3HCH--Tango10\n  Su(var)2-10--Tango10\n  Su(var)2-10--spn-A\n  Tango10--cup\n  Tango10--spn-A\n  Tango10--vari\n  spn-A--spn-A\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG14490\n  CG1142--CG3303\n  CG1142--CG42797\n  CG1142--CG8079\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1142--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF\n- Network density: approximately 0.56\n- Hub proteins (highly connected): ntc, PI31\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG5783--ntc\n  PI31--PI31\n  PI31--ntc\n  Vsx2--ntc\n  ntc--skpA\n  ntc--skpB\n  ntc--skpF\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cul1--skpA\n  Cul1--skpB\n  PI31--Prosalpha7\n  PI31--ntc\n  skpA--skpB\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cul1--Cul1\n  Cul1--ntc\n  Cul1--skpA\n  PI31--Prosalpha7\n  PI31--Prosalpha7\n  PI31--ntc\n  Prosalpha7--ntc\n  ntc--skpA\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10344, CG12012, CG1746, CG30160, Tsp42Eb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG12012, CG1746, CG30160, Tsp42Eb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG10344--CG1746\n  CG10344--CG30160\n  CG10344--Tsp42Eb\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Ady43A, CG1116, CG18417, Cpr92A, tx"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ady43A, CG1116, CG18417, Cpr92A, tx\n\nTWO-HYBRID INTERACTIONS:\n  Ady43A--CG1116\n  CG1116--CG18417\n  CG1116--Cpr92A\n  CG1116--tx\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG31624, CG31988, CG8136, inaD, kermit, rti\n- Network density: approximately 0.53\n- Hub proteins (highly connected): CG8136, rti\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31624, CG31988, CG8136, inaD, kermit, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG31624--CG8136\n  CG31988--CG8136\n  CG8136--inaD\n  CG8136--kermit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  inaD--inaD\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG31624--rti\n  CG8136--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1635, CG1638, CG31961, CG7878\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--CG1638\n  CG1638--CG31961\n  CG1638--CG7878\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: Vps37B\n\nPredict the interactions for Vps37B:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1638--Vps37B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n- Network density: approximately 0.33\n- Hub proteins (highly connected): spartin, futsch\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--spartin\n  CG31038--spartin\n  CG33144--spartin\n  Gas8--spartin\n  nmdyn-D7--spartin\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n  spartin--wit\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eps-15--spartin\n  Eps-15--spartin\n  Rab18--spartin\n  futsch--futsch\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab18--spartin\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso\n\nTWO-HYBRID INTERACTIONS:\n  CG13461--CG5862\n  CG15459--CG5862\n  CG34191--CG5862\n  CG5862--GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG30291\n  CG1104--CG5862\n\nNETWORK SUMMARY: 8 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso\n\nTWO-HYBRID INTERACTIONS:\n  CG1104--CG5862\n  CG1104--CG5862\n  CG13445--CG5862\n  CG13461--CG5862\n  CG15459--CG5862\n  CG34191--CG5862\n  CG5862--GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG30291\n  CG1104--CG5862\n  CG30291--CG5862\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10032, CG10205, CG17019, rdgA, srl\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG17019, srl\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG10205, CG17019, rdgA, srl\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG17019\n  CG10205--CG17019\n  CG17019--rdgA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG17019--srl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG17019--srl\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG30122\n  CG11523--CG42389\n  CG11523--CG6428\n  CG11523--Hsc70-4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11523--CG4325\n  CG11523--rti\n  CG4325--sgg\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG30122\n  CG11523--CG42389\n  CG11523--CG6428\n  CG11523--CG9791\n  CG11523--Hsc70-4\n  CG11523--bif\n  CG30122--CG30122\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11523--CG4325\n  CG11523--rti\n  CG11523--sgg\n  CG11523--sgg\n  CG11523--sgg\n  CG4325--sgg\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10674, CG1544, Rab9, RpL12, Yp1, aop\n- Network density: approximately 0.53\n- Hub proteins (highly connected): aop, CG1544\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, Rab9, RpL12, Yp1, aop\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG1544--RpL12\n  CG1544--Yp1\n  CG1544--aop\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1544--Rab9\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  aop--aop\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15865, CG17162, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n\nTWO-HYBRID INTERACTIONS:\n  CG15865--CG8927\n  CG17162--CG8927\n  CG6945--CG8927\n  CG8927--Hey\n  CG8927--Ir60a\n  CG8927--cindr\n  CG8927--cnc\n  CG8927--spz3\n  Hey--cnc\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG3225\n\nPredict the interactions for CG3225:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3225--CG8927"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n- Network density: approximately 0.42\n- Hub proteins (highly connected): atl, Rpt6R\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--Rpt6R\n  CG15124--Rpt6R\n  CG5026--Rpt6R\n  Ibf2--Ibf2\n  Ibf2--Rpt6R\n  Rlip--Rpt6R\n  Rpt6R--bigmax\n  Rpt6R--fidipidine\n  Rpt6R--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpt6R--atl\n  atl--atl\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  atl--atl\n  atl--atl\n\nCO-FRACTIONATION INTERACTIONS:\n  atl--atl\n\nFRET INTERACTIONS:\n  atl--atl\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  atl--atl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  atl--atl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  atl--atl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10222, CG32683, CG3704, pbl\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10222, CG32683\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG32683, CG3704, pbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG32683\n  CG10222--CG3704\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10222--pbl\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10396, CG11134, CG30089, janA, mus101, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG30089--janA\n  CG30089--mus101\n  CG30089--yki\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG11134, CG30089, janA, mus101, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--yki\n  CG30089--janA\n  CG30089--mus101\n  CG30089--yki\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15863, CG6726, ECSIT, Prosbeta5R1\n- Network density: approximately 0.67\n- Hub proteins (highly connected): ECSIT, CG15863\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15863, CG6726, ECSIT, Prosbeta5R1\n\nTWO-HYBRID INTERACTIONS:\n  CG15863--CG6726\n  CG15863--ECSIT\n  CG15863--Prosbeta5R1\n  ECSIT--ECSIT\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11652, CG13097, CG13458, SH3PX1, Trf4-1\n\nTWO-HYBRID INTERACTIONS:\n  CG13458--SH3PX1\n  SH3PX1--SH3PX1\n  SH3PX1--SH3PX1\n\nNETWORK SUMMARY: 5 proteins, 3 interactions\n\nNew protein to integrate: CG16717\n\nPredict the interactions for CG16717:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11652--CG16717\n  CG13097--CG16717\n  CG13458--CG16717\n  CG16717--SH3PX1\n  CG16717--Trf4-1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11523, CG9791, Tom20, zuc\n- Network density: approximately 1.50\n- Hub proteins (highly connected): zuc, Tom20\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG9791, Tom20, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG9791\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG9791--Tom20\n  CG9791--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n\nTWO-HYBRID INTERACTIONS:\n  CG17765--CG17765\n  Src64B--Src64B\n  Src64B--betaTub56D\n  betaTub56D--cnn\n  cnn--cnn\n  cnn--cnn\n  cnn--cnn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  betaTub56D--cnn\n  cnn--cnn\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  cnn--cnn\n  cnn--cnn\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  cnn--cnn\n\nNETWORK SUMMARY: 8 proteins, 13 interactions\n\nNew protein to integrate: CG10139\n\nPredict the interactions for CG10139:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG10139--CycG\n  CG10139--Hug\n  CG10139--RpS23\n  CG10139--Src64B\n  CG10139--betaTub56D\n  CG10139--cnn\n  CG10139--prc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cyp6a22, Osi6, l(1)G0193, p53"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp6a22, Osi6, l(1)G0193, p53\n\nTWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cyp6a22--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a22--l(1)G0193\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase\n- Network density: approximately 0.32\n- Hub proteins (highly connected): CG10721, l(2)efl\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG10721--CG4045\n  CG10721--CG4293\n  CG10721--Pgd\n  CG10721--RpS20\n  CG10721--l(2)efl\n  CG10721--mtDNA-helicase\n  l(2)efl--l(2)efl\n  l(2)efl--l(2)efl\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C\n\nTWO-HYBRID INTERACTIONS:\n  CG10472--CG18508\n  CG10472--CG2789\n  CG10472--CG33977\n  CG10472--CG42359\n  CG10472--CG8909\n  CG10472--PIG-C\n  CG18508--CG18508\n  CG18508--CG33977\n  CG18508--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 7 proteins, 10 interactions\n\nNew protein to integrate: PIG-S\n\nPredict the interactions for PIG-S:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10472--PIG-S"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Mad, fws\n- Total interactions: approximately 18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11286--fws\n  CG31365--CG31365\n  CG31365--fws\n  CG5466--fws\n  HLH3B--fws\n  Leash--Leash\n  Leash--fws\n  Mad--Mad\n  Mad--fws\n  RtGEF--fws\n  fws--gukh\n  fws--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mad--Mad\n  Mad--Mad\n  fws--rti\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Mad--Mad\n\nCO-FRACTIONATION INTERACTIONS:\n  Mad--Mad\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG1598--CG3838\n  CG1598--CG42820\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Shroom--Shroom\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Shroom--Shroom\n\nCO-FRACTIONATION INTERACTIONS:\n  Shroom--Shroom\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG1598--CG3838\n  CG1598--CG42820\n  CG1598--CG6357\n  CG1598--Shroom\n  CG1598--pip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Shroom--Shroom\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Shroom--Shroom\n\nCO-FRACTIONATION INTERACTIONS:\n  Shroom--Shroom\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10424, Dcp1, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10424, Dcp1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10424--CG10424\n  CG10424--Dcp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10424--rti\n  rti--rti\n\nNETWORK SUMMARY: 3 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CDH1, CUL3, EED, METTL14, RNF123, TRIM25, TRIM54\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--CDH1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDH1--CDH1\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  EED--EED\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nTWO-HYBRID INTERACTIONS:\n  CDH1--CDH1\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CDH1--CDH1\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--RNF123\n  CUL3--TRIM25\n  EED--EED\n  METTL14--METTL14\n  METTL14--METTL14\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TRIM25--TRIM25\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CDH1--CDH1\n  CDH1--TRIM25\n  CDH1--TRIM25\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  TRIM25--TRIM25\n\nCO-FRACTIONATION INTERACTIONS:\n  CUL3--TRIM25\n\nNETWORK SUMMARY: 7 proteins, 48 interactions\n\nNew protein to integrate: ITGAE\n\nPredict the interactions for ITGAE:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  EED--ITGAE\n  ITGAE--TRIM54\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--ITGAE\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ITGAE--TRIM25\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--ITGAE\n  ITGAE--METTL14\n  ITGAE--RNF123"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: RpS26, dimm, eIF-2gamma, nos, osk, vls\n- Network density: approximately 0.93\n- Hub proteins (highly connected): osk, vls\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: RpS26, dimm, eIF-2gamma, nos, osk, vls\n\nTWO-HYBRID INTERACTIONS:\n  RpS26--vls\n  dimm--vls\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nos--osk\n  nos--osk\n  nos--vls\n  nos--vls\n  osk--vls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dimm--dimm\n  eIF-2gamma--vls\n  osk--vls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  nos--osk\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Prosbeta5, l(2)37Cg, me31B\n\nTWO-HYBRID INTERACTIONS:\n  CG10418--LSm1\n  CG6610--LSm7\n  Hil--LSm1\n  LSm1--Prosbeta5\n  LSm1--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10418--CG6610\n  CG6610--LSm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm-4--LSm1\n  LSm-4--LSm1\n  LSm1--LSm7\n  LSm1--LSm7\n  LSm1--me31B\n  LSm7--me31B\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  me31B--me31B\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: Patr-1\n\nPredict the interactions for Patr-1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm1--Patr-1\n  LSm1--Patr-1\n  LSm7--Patr-1\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Patr-1--me31B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG5808\n  CG10324--CG6843\n  CG1622--CG1622\n  CG1622--CG5808\n  CG31211--CG3918\n  CG31211--CG5808\n  CG31211--CG6843\n  CG3918--CG5808\n  CG5808--CG6843\n  CG5808--eIF-2alpha\n  CG6843--CG6843\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG18746--CG5808\n  CG5808--KLHL18\n  KLHL18--KLHL18\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6843\n  CG14490--CG31211\n  CG14490--CG5808\n  CG1622--CG1622\n  CG1622--CG31211\n  CG1622--CG5808\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG3918\n  CG31211--CG5808\n  CG31211--CG6843\n  CG3918--CG5808\n  CG3918--CG6843\n  CG5808--CG6843\n  CG5808--eIF-2alpha\n  CG6843--CG6843\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG18746--CG5808\n  CG18746--CG6843\n  CG5808--KLHL18\n  KLHL18--KLHL18\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n- Network density: approximately 0.38\n- Hub proteins (highly connected): Cyp6a9, nej\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5144--Cyp6a9\n  Cib2--Cyp6a9\n  Cyp6a9--Pak\n  Cyp6a9--RhoGAP68F\n  Cyp6a9--nej\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a21--Cyp6a9\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so\n\nTWO-HYBRID INTERACTIONS:\n  CG2144--Gadd45\n  CG7911--Gadd45\n  Gadd45--Hnf4\n  Gadd45--PCNA\n  Gadd45--Rcd-1r\n  Gadd45--so\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7911--PCNA\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--Smg5\n  Gadd45--hep\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n\nTWO-HYBRID INTERACTIONS:\n  Act5C--Cpr64Ad\n  Act5C--IntS14\n  CG5642--IntS14\n  Cpr64Ad--IntS14\n  IntS1--IntS12\n  IntS10--IntS14\n  IntS10--IntS14\n  IntS14--RpL4\n  IntS14--eIF-4a\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS1--IntS11\n  IntS1--IntS12\n  IntS1--IntS14\n  IntS11--IntS12\n  IntS11--IntS14\n  IntS12--IntS14\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12994, CG16853, ZnT41F, mew\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--ZnT41F\n  CG12994--mew\n  ZnT41F--ZnT41F\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, ZnT41F, mew\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG12994--ZnT41F\n  CG12994--mew\n  ZnT41F--ZnT41F\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi\n- Network density: approximately 0.39\n- Hub proteins (highly connected): Hk, eag\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG4563--Hk\n  Hk--Obp56d\n  Hk--spi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hk--santa-maria\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--eag\n  Hk--eag\n  Hk--qvr\n  Hk--qvr\n  eag--qvr\n  eag--qvr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hk--para\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11570, CG32201, CG9522, magu\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG32201--CG9522\n  CG9522--magu\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG13993\n\nPredict the interactions for CG13993:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13993--CG9522"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10889, Lapsyn, Traf-like, dod, flw\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG10889--dod\n  CG10889--flw\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, Lapsyn, Traf-like, dod, flw\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG10889--Traf-like\n  CG10889--dod\n  CG10889--flw\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so\n\nTWO-HYBRID INTERACTIONS:\n  CG10576--CG9083\n  CG10576--Es2\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10576--CG2862\n  CG10576--CG30339\n  CG10576--dUTPase\n\nCO-FRACTIONATION INTERACTIONS:\n  dUTPase--dUTPase\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dUTPase--dUTPase\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10576--CTPsyn\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so\n\nTWO-HYBRID INTERACTIONS:\n  CG10576--CG9083\n  CG10576--Es2\n  CG10576--so\n  CG9083--so\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10576--CG2862\n  CG10576--CG30339\n  CG10576--dUTPase\n\nCO-FRACTIONATION INTERACTIONS:\n  dUTPase--dUTPase\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10576--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n\nTWO-HYBRID INTERACTIONS:\n  CG14323--CG31211\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--su(w[a])\n  CG31550--su(w[a])\n  CG5343--su(w[a])\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5343--rictor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4AIII--mago\n  eIF4AIII--mago\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  eIF4AIII--su(w[a])\n  mago--su(w[a])\n\nFRET INTERACTIONS:\n  polo--polo\n\nPROTEIN-RNA INTERACTIONS:\n  polo--su(w[a])\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n\nTWO-HYBRID INTERACTIONS:\n  CG14323--CG31211\n  CG14323--su(w[a])\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--su(w[a])\n  CG31550--su(w[a])\n  CG5343--su(w[a])\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  su(w[a])--w\n  su(w[a])--w\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5343--rictor\n  rictor--su(w[a])\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  polo--polo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  eIF4AIII--su(w[a])\n  mago--su(w[a])\n\nFRET INTERACTIONS:\n  polo--polo\n\nPROTEIN-RNA INTERACTIONS:\n  polo--su(w[a])\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG11200, BicC\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n\nTWO-HYBRID INTERACTIONS:\n  BicC--CG11200\n  CG11200--CG33144\n  CG11200--CG7220\n  CG11200--CG8191\n  CG11200--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11200--CG1561\n  CG11200--CG17323\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  BicC--BicC\n\nPROTEIN-RNA INTERACTIONS:\n  BicC--BicC\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acam, CG10799, CG1640, Dif, Ppcs"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acam, CG10799, CG1640, Dif, Ppcs\n\nTWO-HYBRID INTERACTIONS:\n  Acam--CG1640\n  CG10799--CG1640\n  CG1640--Dif\n  CG1640--Ppcs\n  Ppcs--Ppcs\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6766, Fer1HCH, Hsl, apt\n\nTWO-HYBRID INTERACTIONS:\n  CG6766--Hsl\n  CG6766--apt\n  apt--apt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Fer1HCH\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: Hrd3\n\nPredict the interactions for Hrd3:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Hrd3\n  Fer1HCH--Hrd3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG42700--Hsp68\n  CG42700--Hsp70Aa\n  CG42700--Hsp70Ab\n  CG42700--Hsp70Ba\n  CG42700--Hsp70Bb\n  CG42700--Hsp70Bbb\n  CG42700--Hsp70Bc\n  CG42700--Snr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp68--Hsp70Aa\n  Hsp70Aa--Hsp70Ba\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n\nTWO-HYBRID INTERACTIONS:\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--APP\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--KPNA2\n  APP--NUDT9\n  APP--SLC2A2\n  APP--TRUB1\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--SLC2A2\n  APP--APP\n  CAPG--SLC2A2\n  CAPG--TRUB1\n  DVL2--DVL2\n  DVL2--SLC2A2\n  NPLOC4--SLC2A2\n  NUDT9--SLC2A2\n  NUDT9--TRUB1\n  SLC2A2--ST3GAL2\n  SLC2A2--TRUB1\n  SLC2A2--TRUB1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  APOB--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11340, Peb, PebII, a6, betaggt-II"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11340, Peb, PebII, a6, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11340--Peb\n  CG11340--PebII\n  CG11340--a6\n  CG11340--betaggt-II\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11164, CG2199, CG7849, Oda, Traf6\n\nTWO-HYBRID INTERACTIONS:\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: CG7974\n\nPredict the interactions for CG7974:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11164--CG7974\n  CG2199--CG7974\n  CG7849--CG7974\n  CG7974--Oda\n  CG7974--Traf6"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12994, CG16853, jagn, msb1l\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG16853, jagn\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, jagn, msb1l\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG16853--jagn\n  CG16853--msb1l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12203, CG2224, CG9140, ND23, ND75, Pfk, dm\n\nTWO-HYBRID INTERACTIONS:\n  CG2224--ND23\n  ND23--dm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12203--ND23\n  CG9140--ND23\n  ND23--ND75\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Pfk\n\nNETWORK SUMMARY: 7 proteins, 6 interactions\n\nNew protein to integrate: Zw\n\nPredict the interactions for Zw:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Zw"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATPCL, CG10137, sgg\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG10137, sgg\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, sgg\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10137--sgg\n  CG10137--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10911, CG2982, Pex23\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG42336\n\nPredict the interactions for CG42336:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10911--CG42336\n  CG2982--CG42336\n  CG42336--Pex23"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm\n- Network density: approximately 0.25\n- Hub proteins (highly connected): ND23, dm\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm\n\nTWO-HYBRID INTERACTIONS:\n  CG2224--ND23\n  ND23--dm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12203--ND23\n  CG9140--ND23\n  ND23--ND75\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Pfk\n  ND23--Zw\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG9825, Stat92E, dome, et, hop, os, tub"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9825, Stat92E, dome, et, hop, os, tub\n\nTWO-HYBRID INTERACTIONS:\n  CG9825--et\n  et--tub\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--hop\n  dome--hop\n  dome--os\n  et--os\n  hop--os\n  hop--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  dome--hop\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  et--hop\n  hop--os\n  hop--os\n  hop--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--et\n  Stat92E--et\n  Stat92E--hop\n  dome--dome\n  dome--dome\n  dome--et\n  dome--et\n  dome--et\n  dome--hop\n  dome--hop\n  dome--os\n  dome--os\n  et--et\n  et--hop\n  et--hop\n\nPCA INTERACTIONS:\n  dome--dome\n  dome--dome\n  dome--dome\n\nNETWORK SUMMARY: 7 proteins, 57 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG9426, HipHop, Spred, grp, ms(3)K81"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9426, HipHop, Spred, grp, ms(3)K81\n\nTWO-HYBRID INTERACTIONS:\n  CG9426--CG9426\n  CG9426--ms(3)K81\n  Spred--ms(3)K81\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  HipHop--ms(3)K81\n  HipHop--ms(3)K81\n  grp--ms(3)K81\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG12498--Sans\n  CG14074--Sans\n  CG14074--lwr\n  CG43773--Sans\n  Sans--l(2)k09913\n  Sans--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG42593--CG42593\n  CG42593--Sans\n  Cul1--Cul1\n  Cul1--Sans\n  LIMK1--LIMK1\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--Sans\n  CG42593--ck\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG12498--Sans\n  CG14074--CG14074\n  CG14074--Sans\n  CG14074--lwr\n  CG43773--Sans\n  LIMK1--Sans\n  Sans--l(2)k09913\n  Sans--lwr\n  lwr--lwr\n  lwr--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG42593--CG42593\n  CG42593--Sans\n  Cul1--Cul1\n  Cul1--Sans\n  LIMK1--LIMK1\n  Sans--ck\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG42593--CG42593\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--Sans\n  CG42593--ck\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11570, CG12723, CG9522, brk, loco\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG12723\n  CG11570--CG9522\n  CG11570--brk\n  CG11570--loco\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: Cpr72Ea\n\nPredict the interactions for Cpr72Ea:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11570--Cpr72Ea"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG4617, CG6733, dyn-p25\n\nTWO-HYBRID INTERACTIONS:\n  CG4617--CG4617\n\nNETWORK SUMMARY: 3 proteins, 1 interactions\n\nNew protein to integrate: CG17652\n\nPredict the interactions for CG17652:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17652--CG4617\n  CG17652--CG6733\n  CG17652--dyn-p25"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14445, CG14818, DMAP1, Dcr-1, Snx16, Tip60, armi, pont, w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcr-1--w\n  Dcr-1--w\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tip60--pont\n  Tip60--pont\n  armi--armi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DMAP1--pont\n  Tip60--pont\n\nNETWORK SUMMARY: 9 proteins, 7 interactions\n\nNew protein to integrate: Gas41\n\nPredict the interactions for Gas41:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14445--Gas41\n  CG14818--Gas41\n  DMAP1--Gas41\n  Gas41--Snx16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gas41--w\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-1--Gas41\n  Gas41--armi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-1--Gas41\n  Dcr-1--Gas41\n  Gas41--Tip60\n  Gas41--pont\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gas41--pont"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash\n\nTWO-HYBRID INTERACTIONS:\n  CG13957--l(2)37Cg\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dref--Trf2\n  Dref--Trf2\n  wash--wash\n  wash--wash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Dref\n  CG13957--Leash\n  CG13957--Trf2\n  CG13957--wash\n  Dref--Dref\n  Dref--Trf2\n  Leash--wash\n  Trf2--wash\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dref--Trf2\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, pn\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG7387\n  CG6287--CG7387\n  CG7387--CHORD\n  CG7387--Cctgamma\n  CG7387--Cyp4p1\n  CG7387--E(var)3-9\n  CG7387--Ssk\n  CG7387--pn\n\nNETWORK SUMMARY: 9 proteins, 8 interactions\n\nNew protein to integrate: p53\n\nPredict the interactions for p53:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7387--p53\n  p53--p53\n  p53--p53\n  p53--p53"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--ctp\n  CG11125--m-cup\n  CG11125--vari\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG11125--CG33970\n  CG11125--Cdlc2\n  CG11125--Cdlc2\n  CG11125--ctp\n  CG11125--m-cup\n  CG11125--vari\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10949, CG14110, CG9948, wdb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10949, CG14110, CG9948, wdb\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG9948\n  CG14110--CG9948\n  CG9948--wdb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, sol\n\nTWO-HYBRID INTERACTIONS:\n  Bx42--CG3630\n  CG10752--CG3630\n  CG14422--CG3630\n  CG3630--Ef1gamma\n  CG3630--sol\n  Ntf-2--Ntf-2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--Cam\n  CG3630--Ntf-2\n  CG3630--Sod\n  Ntf-2--Sod\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: smt3\n\nPredict the interactions for smt3:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--smt3\n  Ntf-2--smt3\n  Sod--smt3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG31111, CG8909, Gtp-bp, obst-E, opa, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG8909--obst-E\n  obst-E--opa\n  obst-E--sol\n  opa--sol\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31111, CG8909, Gtp-bp, obst-E, opa, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG31111--obst-E\n  CG8909--obst-E\n  Gtp-bp--obst-E\n  obst-E--opa\n  obst-E--sol\n  opa--sol\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n\nTWO-HYBRID INTERACTIONS:\n  CG11148--CG6950\n  CG42388--CG6950\n  CG6950--Cyp6a19\n  CG6950--Or59c\n  CG6950--Rack1\n  CG6950--RpLP1\n  CG6950--Sxl\n  CG6950--Tom7\n  Rack1--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nPCA INTERACTIONS:\n  CG42388--CG42388\n\nCO-FRACTIONATION INTERACTIONS:\n  Rack1--RpLP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6950--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG8191\n  CG13747--CG8191\n  CG17364--CG8191\n  CG8191--kra\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG8191\n  CG13747--CG8191\n  CG17364--CG8191\n  CG5151--CG8191\n  CG7778--CG8191\n  CG8191--kra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10321, CG14811, Fas2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14811--Fas2\n  CG14811--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG14811, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG14811\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14811--Fas2\n  CG14811--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Best2, CG18746, CG6843, CG8833, Leash\n\nTWO-HYBRID INTERACTIONS:\n  CG6843--CG8833\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG6843\n  CG18746--CG8833\n  CG8833--Leash\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG18746, CG6843, CG8833, Leash\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG8833\n  CG6843--CG6843\n  CG6843--CG8833\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG6843\n  CG18746--CG8833\n  CG8833--Leash\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Jupiter, Mink, Tsc1, foxo, mad2, skpB\n\nTWO-HYBRID INTERACTIONS:\n  Jupiter--Mink\n  Mink--mad2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--Tsc1\n  Mink--foxo\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jupiter, Mink, Tsc1, foxo, mad2, skpB\n\nTWO-HYBRID INTERACTIONS:\n  Jupiter--Mink\n  Mink--mad2\n  Mink--skpB\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--Tsc1\n  Mink--foxo\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11486, CG11498, bip2, rump"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11486, CG11498, bip2, rump\n\nTWO-HYBRID INTERACTIONS:\n  CG11486--CG11498\n  CG11498--bip2\n  CG11498--rump\n  rump--rump\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n- Network density: approximately 0.44\n- Hub proteins (highly connected): CG13074, ctp\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n\nTWO-HYBRID INTERACTIONS:\n  CG13074--Cdlc2\n  CG13074--Gapdh1\n  CG13074--Pvf1\n  CG13074--RpL15\n  CG13074--RpL19\n  CG13074--RpL41\n  CG13074--ctp\n  CG13074--robl\n  CG13074--robl\n  RpL19--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL15--RpL19\n  RpL15--RpL41\n  RpL19--RpL41\n  ctp--ctp\n  ctp--robl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 9 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n\nTWO-HYBRID INTERACTIONS:\n  CG11148--CG6950\n  CG6950--Rack1\n  CG6950--RpLP1\n  CG6950--Tom7\n  Rack1--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nCO-FRACTIONATION INTERACTIONS:\n  Rack1--RpLP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6950--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n\nTWO-HYBRID INTERACTIONS:\n  CG11148--CG6950\n  CG42388--CG6950\n  CG6950--Cyp6a19\n  CG6950--Or59c\n  CG6950--Rack1\n  CG6950--RpLP1\n  CG6950--Sxl\n  CG6950--Tom7\n  Rack1--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nPCA INTERACTIONS:\n  CG42388--CG42388\n\nCO-FRACTIONATION INTERACTIONS:\n  Rack1--RpLP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6950--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--sky\n  Rab7--Vps39\n  shrb--shrb\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  TSG101--TSG101\n\nPCA INTERACTIONS:\n  TSG101--TSG101\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Rab5--sky\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hrs--sky\n  Rab7--sky\n  TSG101--sky\n  Vps25--sky\n  shrb--sky\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--sky\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--sky\n  Rab7--Vps39\n  TSG101--TSG101\n  TSG101--TSG101\n  TSG101--TSG101\n  shrb--shrb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab5--Rab7\n  orb2--orb2\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  TSG101--TSG101\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--sky\n\nPCA INTERACTIONS:\n  TSG101--TSG101\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Rab5--sky\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hrs--sky\n  Rab7--sky\n  TSG101--sky\n  Vps25--sky\n  Vps39--sky\n  shrb--sky\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bx, Chi, Grasp65, Hydr2, how\n\nTWO-HYBRID INTERACTIONS:\n  Bx--Chi\n  Grasp65--Hydr2\n  Hydr2--how\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Chi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Hydr2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Chi--Hydr2\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, Chi, Grasp65, Hydr2, how\n\nTWO-HYBRID INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Grasp65--Hydr2\n  Hydr2--how\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Chi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Hydr2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Chi--Hydr2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bx--Chi\n  Chi--Chi\n  Chi--Chi\n  how--how\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Grasp65--how\n\nNETWORK SUMMARY: 5 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10621, CG13245, CG2931, Cpr100A, Lin29, TfIIEbeta, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG10621--CG13245\n  CG10621--CG2931\n  CG10621--Cpr100A\n  CG10621--Lin29\n  CG10621--TfIIEbeta\n  CG10621--rau\n  Cpr100A--Cpr100A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 7 proteins, 8 interactions\n\nNew protein to integrate: Efa6\n\nPredict the interactions for Efa6:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10621--Efa6\n  Efa6--Efa6"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG11456, CG4854\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C\n\nTWO-HYBRID INTERACTIONS:\n  CG11456--CG13005\n  CG11456--CG4854\n  CG11456--CG6276\n  CG11456--CG6654\n  CG11456--Hr78\n  CG11456--Jon65Aiv\n  CG11456--Sox21b\n  CG11456--TpnC41C\n  CG4854--CG4854\n  CG4854--Sox21b\n  Hr78--Sox21b\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG10139--CycG\n  CG10139--Hug\n  CG10139--Src64B\n  CG10139--betaTub56D\n  CG10139--prc\n  CG17765--CG17765\n  Src64B--Src64B\n  betaTub56D--cnn\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  cnn--cnn\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG10139--CycG\n  CG10139--Hug\n  CG10139--RpS23\n  CG10139--Src64B\n  CG10139--betaTub56D\n  CG10139--cnn\n  CG10139--prc\n  CG17765--CG17765\n  Src64B--Src64B\n  Src64B--betaTub56D\n  betaTub56D--cnn\n  cnn--cnn\n  cnn--cnn\n  cnn--cnn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  betaTub56D--cnn\n  cnn--cnn\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  cnn--cnn\n  cnn--cnn\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  cnn--cnn\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n\nTWO-HYBRID INTERACTIONS:\n  DIP1--DIP1\n  DIP1--Tango9\n  Tango9--phr\n  phr--phr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CdsA\n  CG11857--Ost48\n  CG11857--OstDelta\n  CG11857--Sc2\n  CG11857--Sec61alpha\n  CG11857--Surf4\n  CG11857--Tango9\n  CdsA--Ost48\n  CdsA--OstDelta\n  CdsA--Sc2\n  CdsA--Sec61alpha\n  CdsA--Surf4\n  CdsA--Tango9\n  Ost48--OstDelta\n  Ost48--Sc2\n  Ost48--Sec61alpha\n  Ost48--Surf4\n  Ost48--Tango9\n  OstDelta--Sc2\n  OstDelta--Sec61alpha\n  OstDelta--Surf4\n  OstDelta--Tango9\n  Sc2--Sec61alpha\n  Sc2--Surf4\n  Sc2--Tango9\n  Sec61alpha--Surf4\n  Sec61alpha--Tango9\n  Surf4--Tango9\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1138, Snx1, l(2)37Cg, scramb2\n\nTWO-HYBRID INTERACTIONS:\n  CG1138--Snx1\n  CG1138--l(2)37Cg\n  CG1138--scramb2\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: nudE\n\nPredict the interactions for nudE:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1138--nudE"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl\n\nTWO-HYBRID INTERACTIONS:\n  CG9775--Ref1\n  CG9775--Zn72D\n  CG9775--eIF4E-7\n  Ref1--Ref1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6701--CG9775\n  CG6701--Syp\n  CG9775--FK506-bp1\n  CG9775--phl\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl\n\nTWO-HYBRID INTERACTIONS:\n  CG9775--Ref1\n  CG9775--Zn72D\n  CG9775--eIF4E-7\n  FK506-bp1--FK506-bp1\n  Ref1--Ref1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6701--CG9775\n  CG6701--Syp\n  CG9775--FK506-bp1\n  CG9775--Syp\n  CG9775--phl\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 8 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG10053, Clamp\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG10053--CG15631\n  CG10053--Clamp\n  CG10053--HLH4C\n  CG10053--Pk17E\n  Clamp--Clamp\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg\n\nTWO-HYBRID INTERACTIONS:\n  CG2199--Rb97D\n  Hrb27C--Rb97D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10777--Rb97D\n  CG43444--Rb97D\n  CG43444--vkg\n  Rb97D--ZAP3\n  Rb97D--vkg\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg\n\nTWO-HYBRID INTERACTIONS:\n  CG2199--Hrb27C\n  CG2199--Rb97D\n  Hrb27C--Rb97D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10777--Rb97D\n  CG10777--ZAP3\n  CG43444--Rb97D\n  CG43444--ZAP3\n  CG43444--vkg\n  Rb97D--ZAP3\n  Rb97D--vkg\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Fas2, Pkcdelta, Pvf1, robl\n\nTWO-HYBRID INTERACTIONS:\n  Pkcdelta--Pvf1\n  Pkcdelta--robl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fas2, Pkcdelta, Pvf1, robl\n\nTWO-HYBRID INTERACTIONS:\n  Pkcdelta--Pvf1\n  Pkcdelta--robl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fas2--Pkcdelta\n  Fas2--Pkcdelta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG10663, Rtnl1\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10663--CG2199\n  CG10663--Ef1alpha48D\n  CG10663--His3.3B\n  CG10663--Pax\n  CG10663--Syp\n  CG10663--geminin\n  CG10663--lcs\n  Rtnl1--Rtnl1\n  geminin--geminin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10663--Rtnl1\n  Rtnl1--Rtnl1\n  Rtnl1--Syp\n  Rtnl1--Syp\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--Mdr49\n  CG2678--CG2678\n  CG2678--Mdr49\n  Cpr50Ca--Mdr49\n  Mdr49--Tango6\n  Mdr49--pzg\n  pzg--pzg\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hmgcr--Mdr49\n\nPCA INTERACTIONS:\n  pzg--pzg\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10336, CG7191, Rcd-1r, TER94\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG10336--Rcd-1r\n  CG10336--TER94\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG7191, Rcd-1r, TER94\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG10336--Rcd-1r\n  CG10336--TER94\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TER94--TER94\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  AnxB11--CG12857\n  AnxB11--CG13321\n  AnxB11--CG14408\n  AnxB11--CG2199\n  AnxB11--Hrs\n  AnxB11--Rm62\n  AnxB11--Srp68\n  AnxB11--mei-S332\n  CG10465--CG10465\n  CG10465--CG10465\n  CG2199--Srp68\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, RhoGAP92B, Tektin-A, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG10508--CG14840\n  CG10508--CG16721\n  CG10508--CG9213\n  CG10508--CycE\n  CG10508--Pp2B-14D\n  CG10508--RhoGAP92B\n  CG10508--Tektin-A\n  CG10508--Traf-like\n  Tektin-A--Traf-like\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: Prm\n\nPredict the interactions for Prm:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10508--Prm\n  CG16721--Prm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG4661, CG7724, Hsl, heph\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG7724, Hsl\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4661, CG7724, Hsl, heph\n\nTWO-HYBRID INTERACTIONS:\n  CG4661--CG7724\n  CG7724--Hsl\n  CG7724--heph\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG14053--CG33144\n  CG14232--CG33144\n  CG18259--CG18259\n  CG18259--CG33144\n  CG18259--Prm\n  CG33144--CG34113\n  CG33144--skpF\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG14053--CG33144\n  CG14053--skpF\n  CG14232--CG33144\n  CG18259--CG18259\n  CG18259--CG33144\n  CG18259--Prm\n  CG33144--CG34113\n  CG33144--Prm\n  CG33144--bocksbeutel\n  CG33144--skpF\n  CG33144--spartin\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10559, CG1690, eIF4E-5, eIF4E-7\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG1690, CG10559\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG1690, eIF4E-5, eIF4E-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG1690\n  CG1690--eIF4E-5\n  CG1690--eIF4E-7\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10959, CG13151, CG15916, CG2129, CG2199\n- Network density: approximately 0.70\n- Hub proteins (highly connected): CG2129, CG13151\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG13151, CG15916, CG2129, CG2199\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG13151\n  CG13151--CG15916\n  CG13151--CG2129\n  CG13151--CG2199\n  CG2129--CG2129\n  CG2129--CG2129\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13151--CG2129\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ARPC3, CCR10, DDX58, PRRC2A\n- Network density: approximately 1.50\n- Hub proteins (highly connected): DDX58, PRRC2A\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARPC3, CCR10, DDX58, PRRC2A\n\nTWO-HYBRID INTERACTIONS:\n  ARPC3--CCR10\n  CCR10--PRRC2A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ARPC3--DDX58\n  CCR10--DDX58\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRRC2A--PRRC2A\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Ady43A, CG1116, CG18417, Cpr92A\n\nTWO-HYBRID INTERACTIONS:\n  Ady43A--CG1116\n  CG1116--CG18417\n  CG1116--Cpr92A\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: tx\n\nPredict the interactions for tx:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1116--tx"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11151, CG7950, Pex5, alpha-Est7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11151, CG7950, Pex5, alpha-Est7\n\nTWO-HYBRID INTERACTIONS:\n  CG11151--CG7950\n  CG11151--Pex5\n\nPCA INTERACTIONS:\n  CG11151--alpha-Est7\n  alpha-Est7--alpha-Est7\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15293, CG5013, TfIIEalpha, TfIIEbeta\n- Network density: approximately 1.00\n- Hub proteins (highly connected): TfIIEalpha, TfIIEbeta\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15293, CG5013, TfIIEalpha, TfIIEbeta\n\nTWO-HYBRID INTERACTIONS:\n  CG15293--TfIIEalpha\n  CG5013--TfIIEalpha\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6656, Cyp28d1, Cyp28d2, EDTP, cry\n- Network density: approximately 0.50\n- Hub proteins (highly connected): Cyp28d1, Cyp28d2\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6656, Cyp28d1, Cyp28d2, EDTP, cry\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d1\n  CG6656--Cyp28d2\n  Cyp28d1--Cyp28d2\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Cyp28d1--cry\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lsd-1--Lsd-2\n  Lsd-1--mrt\n  Lsd-2--bmm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--bmm\n  Lsd-1--Lsd-2\n  Lsd-1--Lsd-2\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  th--th\n\nPCA INTERACTIONS:\n  CG11700--Lsd-1\n  Jabba--Jabba\n  Lsd-1--Ubi-p5E\n  Lsd-2--Ubi-p5E\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th\n\nTWO-HYBRID INTERACTIONS:\n  CG14453--Lsd-1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lsd-1--Lsd-2\n  Lsd-1--mrt\n  Lsd-1--th\n  Lsd-2--bmm\n  Lsd-2--bmm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--Lsd-2\n  Lsd-1--Lsd-2\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  th--th\n\nPCA INTERACTIONS:\n  CG11700--Lsd-1\n  CG11700--Lsd-2\n  Jabba--Jabba\n  Jabba--Lsd-1\n  Lsd-1--Ubi-p5E\n  Lsd-2--Ubi-p5E\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe\n- Network density: approximately 4.86\n- Hub proteins (highly connected): N, toe\n- Total interactions: approximately 136"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe\n\nTWO-HYBRID INTERACTIONS:\n  CG17186--toe\n  CG3880--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--eyg\n  N--eyg\n  N--eyg\n  N--fng\n  N--fng\n  N--fng\n  N--fng\n  N--toe\n  eyg--fng\n  eyg--toe\n  fng--toe\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  N--fng\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15098--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  fzy--toe\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 8 proteins, 136 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13822, Rca1, TFAM, ago, gammaTub37C\n\nTWO-HYBRID INTERACTIONS:\n  CG13822--Rca1\n  CG13822--TFAM\n  CG13822--ago\n  CG13822--gammaTub37C\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: CG14317\n\nPredict the interactions for CG14317:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13822--CG14317"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Act5C, Rab11, Rab4, spir\n\nCO-FRACTIONATION INTERACTIONS:\n  Act5C--spir\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Act5C--spir\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Act5C--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Act5C--Rab11\n  Rab11--Rab4\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: CG14579\n\nPredict the interactions for CG14579:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14579--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Act5C--CG14579\n  CG14579--Rab11\n  CG14579--Rab11\n  CG14579--Rab4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13689, CG15908, CG31140, ste14\n\nTWO-HYBRID INTERACTIONS:\n  CG13689--ste14\n  CG15908--ste14\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13689, CG15908, CG31140, ste14\n\nTWO-HYBRID INTERACTIONS:\n  CG13689--ste14\n  CG15908--ste14\n  CG31140--ste14\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG8038, CG8349\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG11447--CG11726\n  CG11726--CG12470\n  CG11726--CG1738\n  CG11726--CG2120\n  CG11726--CG2709\n  CG11726--CG8038\n  CG11726--CG8349\n  CG2709--CG2709\n  CG8349--CG8349\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG5674\n\nPredict the interactions for CG5674:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11726--CG5674"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm\n\nTWO-HYBRID INTERACTIONS:\n  CG2224--ND23\n  ND23--dm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12203--ND23\n  CG9140--ND23\n  ND23--ND75\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Pfk\n  ND23--Zw\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5484, CG7222, TwdlL\n\nTWO-HYBRID INTERACTIONS:\n  CG5484--CG7222\n  CG7222--TwdlL\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG10214\n\nPredict the interactions for CG10214:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10214--CG7222"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Best2, CG15514, CG8833, PHDP, PebIII, Sc2\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG15514\n  Best2--CG8833\n  Best2--PHDP\n  Best2--PebIII\n  Best2--Sc2\n  CG15514--CG15514\n  CG15514--CG15514\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG15514--CG15514\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: CG30428\n\nPredict the interactions for CG30428:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Best2--CG30428"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14151, CG14317, CG2247, Rca1, TFAM, alph"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14151, CG14317, CG2247, Rca1, TFAM, alph\n\nTWO-HYBRID INTERACTIONS:\n  CG14151--CG14317\n  CG14151--CG2247\n  CG14151--Rca1\n  CG14151--TFAM\n  CG14151--alph\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11534, CG12985, CG8134, Rab5\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG8134, CG12985\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG12985, CG8134, Rab5\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG8134\n  CG12985--CG12985\n  CG12985--CG8134\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8134--Rab5\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Dsk, Ptr\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr\n\nTWO-HYBRID INTERACTIONS:\n  CG8507--Dsk\n  CG9928--Dsk\n  Dsk--Ptr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CCKLR-17D1--Dsk\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--eIF2B-beta\n  CG11876--CG11876\n  CG11876--eIF2B-beta\n  CG15169--eIF2B-beta\n  CG15478--eIF2B-beta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-beta--inv\n  eIF2B-beta--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG12012--Pi3K68D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CG12012\n  CG12012--CG5447\n  CG12012--Ndfip\n  CG12012--Syb\n  CG5447--CG7668\n  CG5447--Syb\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG12012--Pi3K68D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CG12012\n  CG12012--CG4822\n  CG12012--CG5447\n  CG12012--CG7668\n  CG12012--Ndfip\n  CG12012--R\n  CG12012--Syb\n  CG5447--CG7668\n  CG5447--Syb\n  CG7668--Syb\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG9986, Jon66Cii, RASSF8, lama, ttk"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9986, Jon66Cii, RASSF8, lama, ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG9986--lama\n  Jon66Cii--lama\n  RASSF8--RASSF8\n  RASSF8--lama\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  lama--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 5 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15306, Cdlc2, Vap-33B, ctp"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15306, Cdlc2, Vap-33B, ctp\n\nTWO-HYBRID INTERACTIONS:\n  CG15306--Cdlc2\n  CG15306--Vap-33B\n  CG15306--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG10252, mgr\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG10252--CG3792\n  CG10252--CG44251\n  CG10252--D1\n  CG10252--Zyx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10252--CG7770\n  CG10252--CG8292\n  CG10252--mgr\n  CG10252--rti\n  CG7770--mgr\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CCKLR-17D1, CG8507, CG9928, Ptr\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: Dsk\n\nPredict the interactions for Dsk:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8507--Dsk\n  CG9928--Dsk\n  Dsk--Ptr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CCKLR-17D1--Dsk"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11266, CG4116, CG8273, Rga, loqs"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG4116, CG8273, Rga, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG8273\n  CG4116--CG8273\n  CG4116--loqs\n  CG8273--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  loqs--loqs\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG8273--Rga\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10914\n  CG10914--CG15631\n  CG10914--CG15676\n  CG10914--CG3528\n  CG10914--CG7009\n  CG10914--GstE1\n  CG15631--CG15676\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG7191--Capa\n  CG7191--Gad1\n  CG7191--Oatp58Db\n  CG7191--Pex19\n  CG7191--lectin-33A\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG14866--CG7191\n  CG1671--CG7191\n  CG5191--CG7191\n  CG7191--Capa\n  CG7191--Gad1\n  CG7191--Oatp58Db\n  CG7191--Pex19\n  CG7191--lectin-33A\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG10513--CG13168\n  CG10513--Cwc25\n  CG10513--Prp3\n  CG10513--Rlb1\n  Prp3--Prp3\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG32486, Obp58c, ScpX, ref(2)P\n\nTWO-HYBRID INTERACTIONS:\n  CG32486--CG32486\n  Obp58c--ScpX\n  ScpX--ref(2)P\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ref(2)P--ref(2)P\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32486, Obp58c, ScpX, ref(2)P\n\nTWO-HYBRID INTERACTIONS:\n  CG32486--CG32486\n  CG32486--ScpX\n  CG32486--ScpX\n  Obp58c--ScpX\n  ScpX--ref(2)P\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ref(2)P--ref(2)P\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10949, CG9948, wdb\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG9948\n  CG9948--wdb\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG14110\n\nPredict the interactions for CG14110:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14110--CG9948"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11249, CG11380, CG3942, robl62A, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG11249--CG11380\n  CG11249--CG3942\n  CG11249--robl62A\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11249, CG11380, CG3942, robl62A, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG11249--CG11380\n  CG11249--CG3942\n  CG11249--robl62A\n  CG11249--sol\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10559, eIF4E-5, eIF4E-7\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG1690\n\nPredict the interactions for CG1690:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10559--CG1690\n  CG1690--eIF4E-5\n  CG1690--eIF4E-7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11455, CG14044, CG14478, CG6195, dl\n- Network density: approximately 0.90\n- Hub proteins (highly connected): dl, CG11455\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11455, CG14044, CG14478, CG6195, dl\n\nTWO-HYBRID INTERACTIONS:\n  CG11455--CG14478\n  CG11455--CG6195\n  CG11455--dl\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11455--CG14044\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 5 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11190, CG5973, PIG-S, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--PIG-S\n  CG11190--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: CG4406\n\nPredict the interactions for CG4406:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--CG4406"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide\n\nTWO-HYBRID INTERACTIONS:\n  Acp95EF--spheroide\n  Edc3--spheroide\n  PebIII--spheroide\n  RN-tre--spheroide\n  fra--spheroide\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14823--spheroide\n  CG9581--Jon65Aiv\n  CG9581--spheroide\n  Fer1HCH--Jon65Aiv\n  Fer1HCH--spheroide\n  Jon65Aiv--spheroide\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Edc3--Edc3\n  fra--fra\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri\n\nTWO-HYBRID INTERACTIONS:\n  CG14684--yuri\n  IP3K2--yuri\n  Ubx--yuri\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tm1--yuri\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri\n\nTWO-HYBRID INTERACTIONS:\n  CG14684--yuri\n  IP3K2--yuri\n  Rbp6--yuri\n  Tm1--Tm1\n  Ubx--yuri\n  lark--yuri\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tm1--yuri\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10616, CG16781, CG4955, CG5906\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG4955\n  CG16781--CG4955\n  CG4955--CG5906\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG14232\n\nPredict the interactions for CG14232:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14232--CG4955"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  PGRP-LE--PGRP-LE\n  PGRP-LE--PGRP-LE\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1943--CG33672\n  CG1943--PGRP-LE\n  CG1943--PHDP\n  CG1943--Vsx2\n  PGRP-LE--PGRP-LE\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-FRACTIONATION INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1943--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 6 proteins, 12 interactions\n\nNew protein to integrate: CG11320\n\nPredict the interactions for CG11320:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11320--CG1943"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5274, CycK, IntS10, L, cup, gro\n\nTWO-HYBRID INTERACTIONS:\n  CG5274--CycK\n  CG5274--L\n  CG5274--cup\n  CG5274--gro\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5274, CycK, IntS10, L, cup, gro\n\nTWO-HYBRID INTERACTIONS:\n  CG5274--CycK\n  CG5274--IntS10\n  CG5274--L\n  CG5274--cup\n  CG5274--gro\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu\n\nTWO-HYBRID INTERACTIONS:\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG15136--MAGE\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  MAGE--mei-41\n  MAGE--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n\nNETWORK SUMMARY: 8 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu\n\nTWO-HYBRID INTERACTIONS:\n  C1GalTA--MAGE\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG15136--MAGE\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  MAGE--mei-41\n  MAGE--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  MAGE--spn-A\n  mei-41--tefu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 8 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1\n\nTWO-HYBRID INTERACTIONS:\n  DESI1--FGF7\n  DESI1--UBQLN1\n  FGF7--HSPG2\n  FGF7--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FGFR2--FGFR2\n  FGFR2--FGFR2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--Fgfr2\n  FGF7--HSPG2\n  FGF7--PTX3\n  FGFR2--FGFR2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  FGF7--HSPG2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DESI1--UBQLN1\n  UBQLN1--UBQLN1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12470, CG3281, CG7386, CG8159, esn, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--CG3281\n  CG12470--CG8159\n  CG12470--esn\n  CG3281--CG7386\n  CG3281--CG8159\n  CG3281--esn\n  CG3281--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  CG8159--CG8159\n  CG8159--CG8159\n\nNETWORK SUMMARY: 6 proteins, 11 interactions\n\nNew protein to integrate: RpL18A\n\nPredict the interactions for RpL18A:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG3281--RpL18A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CCR10, DDX58, PRRC2A\n\nTWO-HYBRID INTERACTIONS:\n  CCR10--PRRC2A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CCR10--DDX58\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRRC2A--PRRC2A\n\nNETWORK SUMMARY: 3 proteins, 7 interactions\n\nNew protein to integrate: ARPC3\n\nPredict the interactions for ARPC3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ARPC3--CCR10\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ARPC3--DDX58"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Acer, Akt1, AnxB10, CG5844, Prx2540-2, Tom20, ade5, spz3\n\nTWO-HYBRID INTERACTIONS:\n  Acer--CG5844\n  Akt1--Akt1\n  CG5844--spz3\n  ade5--ade5\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--CG5844\n  AnxB10--CG5844\n  AnxB10--Prx2540-2\n  CG5844--Prx2540-2\n  CG5844--ade5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5844--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 8 proteins, 12 interactions\n\nNew protein to integrate: CG5611\n\nPredict the interactions for CG5611:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5611--CG5844"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n  CG5973--phyl\n  phyl--phyl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1620--CG5973\n  CG1620--CG8745\n  CG1620--MrgBP\n  CG1620--Rpd3\n  CG1620--dom\n  CG5973--CG8745\n  CG5973--MrgBP\n  CG5973--Rpd3\n  CG5973--YL-1\n  CG5973--dom\n  CG8745--MrgBP\n  CG8745--Rpd3\n  CG8745--dom\n  MrgBP--dom\n  YL-1--dom\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Rpd3--dom\n\nNETWORK SUMMARY: 9 proteins, 19 interactions\n\nNew protein to integrate: rept\n\nPredict the interactions for rept:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG5973--rept\n  CG8745--rept\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dom--rept"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, LCOR, MC4R, RNF157, ZDHHC15\n\nTWO-HYBRID INTERACTIONS:\n  ATRNL1--DYRK1A\n  ATRNL1--LCOR\n  ATRNL1--MC4R\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DYRK1A--DYRK1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--DEFB135\n  ATRNL1--FAM19A2\n  ATRNL1--RNF157\n  ATRNL1--ZDHHC15\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--HNRNPU\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATRNL1--HNRNPU\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HNRNPU--HNRNPU\n  HNRNPU--HNRNPU\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: HYOU1\n\nPredict the interactions for HYOU1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--HYOU1\n  DYRK1A--HYOU1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HYOU1--HYOU1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11337, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG31121--CG5522\n  CG31121--Cfp1\n  CG31121--Hsc70-5\n  CG31121--RpL14\n  CG31121--aru\n  CG31121--nito\n  CG5522--aru\n\nNETWORK SUMMARY: 8 proteins, 8 interactions\n\nNew protein to integrate: CG13458\n\nPredict the interactions for CG13458:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13458--CG31121\n  CG13458--nito"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG6175, Rcd5\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n\nTWO-HYBRID INTERACTIONS:\n  CG13293--CG6175\n  CG6175--CSN8\n  CG6175--CycK\n  CG6175--Pp2A-29B\n  CG6175--Prosbeta3\n  CG6175--Rcd5\n  CG6175--Tektin-A\n  CG6175--betaggt-II\n  CG6175--ple\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11337, CG31121, CG7386, a, sol, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG11337--CG7386\n  CG11337--a\n  CG11337--sol\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 6 proteins, 9 interactions\n\nNew protein to integrate: Tom20\n\nPredict the interactions for Tom20:"
-      },
-      {
-        "role": "assistant",
-        "content": "PROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--Tom20\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG11382\n  CG11382--CG1598\n  CG11382--CG3225\n  CG11382--CG43129\n  CG11382--CG7264\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG31624, CG31988, CG8136, inaD, kermit, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG31624--CG8136\n  CG31988--CG8136\n  CG8136--inaD\n  CG8136--kermit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  inaD--inaD\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31624, CG31988, CG8136, inaD, kermit, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG31624--CG8136\n  CG31988--CG8136\n  CG8136--inaD\n  CG8136--kermit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  inaD--inaD\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG31624--rti\n  CG8136--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1129, CG8207, CycK, step\n\nTWO-HYBRID INTERACTIONS:\n  CG1129--CG8207\n  CG1129--CG8207\n  CG8207--CycK\n  CG8207--step\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: CG6576\n\nPredict the interactions for CG6576:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6576--CG8207"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca\n\nTWO-HYBRID INTERACTIONS:\n  CG13741--CG4983\n  CG4983--mahj\n  CG4983--ms(3)76Ca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4983--alpha4GT1\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG4983\n  CG13741--CG4983\n  CG4983--mahj\n  CG4983--ms(3)76Ca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4983--alpha4GT1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CtBP, Lim3, NK7.1, abd-A\n\nTWO-HYBRID INTERACTIONS:\n  CtBP--CtBP\n  CtBP--NK7.1\n  Lim3--NK7.1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nPCA INTERACTIONS:\n  CtBP--abd-A\n  NK7.1--abd-A\n  abd-A--abd-A\n\nNETWORK SUMMARY: 4 proteins, 8 interactions\n\nNew protein to integrate: Ubx\n\nPredict the interactions for Ubx:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ubx--abd-A\n  Ubx--abd-A\n\nPCA INTERACTIONS:\n  CtBP--Ubx\n  CtBP--Ubx\n  NK7.1--Ubx\n  Ubx--abd-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--Ubx\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CtBP--Ubx"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10265, CG17625, FoxP, lola\n\nTWO-HYBRID INTERACTIONS:\n  CG17625--FoxP\n  CG17625--lola\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  lola--lola\n  lola--lola\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10265, CG17625, FoxP, lola\n\nTWO-HYBRID INTERACTIONS:\n  CG10265--CG17625\n  CG17625--FoxP\n  CG17625--lola\n  FoxP--FoxP\n  FoxP--FoxP\n  lola--lola\n  lola--lola\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  lola--lola\n  lola--lola\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG10710\n  CG10710--CG11796\n  CG10710--CG42369\n  CG10710--CG4328\n  CG10710--CtBP\n  CG10710--Hakai\n  CG10710--Pih1D1\n  CG11796--CG11796\n  CtBP--CtBP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C15, CG15443, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n\nTWO-HYBRID INTERACTIONS:\n  C15--Hr78\n  C15--l(2)k10201\n  CG15443--l(2)k10201\n  CG6272--Hr78\n  CG6272--l(2)k10201\n  Ets65A--l(2)k10201\n  Hr78--Rel\n  Hr78--l(2)k10201\n  Rel--Rel\n  Rel--l(2)k10201\n  Sesn--l(2)k10201\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 8 proteins, 13 interactions\n\nNew protein to integrate: CG18262\n\nPredict the interactions for CG18262:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG18262--l(2)k10201"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10426, CG17698, CG3309, CG34380, bdg, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG10426--CG34380\n  CG10426--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10426--p53\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG17698, CG3309, CG34380, bdg, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG17698\n  CG10426--CG3309\n  CG10426--CG34380\n  CG10426--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10426--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w\n\nTWO-HYBRID INTERACTIONS:\n  CG31036--cm\n  CG4554--cm\n  Or98b--cm\n  Slip1--cm\n  Treh--cm\n  Usf--cm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Blos1--cm\n  cm--w\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w\n\nTWO-HYBRID INTERACTIONS:\n  CG31036--cm\n  CG4554--cm\n  Or98b--cm\n  Slip1--cm\n  Taf6--cm\n  Treh--cm\n  Usf--cm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Blos1--cm\n  Blos1--cm\n  cm--w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Blos1--w\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG30417, rdx\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG14647--CG14647\n  CG14647--CG30417\n  CG2909--CG30417\n  CG30417--CG6770\n  CG30417--CG7229\n  CG30417--CG7229\n  CG30417--amos\n  CG30417--fs(1)h\n  CG30417--inv\n  CG30417--rdx\n  CG30417--sa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG11266\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6340\n  CG10324--l(2)37Cb\n  CG11266--CG11266\n  CG11266--CG6340\n  CG11266--CG6843\n  CG31211--CG5808\n  CG31211--CG6843\n  CG6843--CG6843\n  CG6843--SRm160\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG11266\n  CG10324--CG12877\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6340\n  CG10324--CG6843\n  CG10324--SRm160\n  CG10324--l(2)37Cb\n  CG11266--CG11266\n  CG11266--CG31211\n  CG11266--CG6340\n  CG11266--CG6843\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG5808\n  CG31211--CG6843\n  CG31211--SRm160\n  CG5808--CG6843\n  CG6340--CG6843\n  CG6843--CG6843\n  CG6843--SRm160\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14372, beat-IIa, dm\n\nTWO-HYBRID INTERACTIONS:\n  beat-IIa--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14372--beat-IIa\n  CG14372--beat-IIa\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: side\n\nPredict the interactions for side:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  beat-IIa--side\n  beat-IIa--side"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG14647--CG14647\n  CG14647--CG30417\n  CG30417--CG6770\n  CG30417--amos\n  CG30417--inv\n  CG30417--rdx\n  CG30417--sa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14647, CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG14647--CG14647\n  CG14647--CG30417\n  CG2909--CG30417\n  CG30417--CG6770\n  CG30417--CG7229\n  CG30417--CG7229\n  CG30417--amos\n  CG30417--fs(1)h\n  CG30417--inv\n  CG30417--rdx\n  CG30417--sa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11164, CG2199, CG7849, CG7974, Oda, Traf6\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG7974\n  CG2199--CG7974\n  CG7849--CG7974\n  CG7974--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG2199, CG7849, CG7974, Oda, Traf6\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG7974\n  CG2199--CG7974\n  CG7849--CG7974\n  CG7974--Oda\n  CG7974--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 6 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol\n\nTWO-HYBRID INTERACTIONS:\n  Bx42--CG3630\n  CG10752--CG3630\n  CG14422--CG3630\n  CG3630--Ef1gamma\n  CG3630--sol\n  Ntf-2--Ntf-2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--Cam\n  CG3630--Ntf-2\n  CG3630--Sod\n  CG3630--smt3\n  Ntf-2--Sod\n  Ntf-2--smt3\n  Sod--smt3\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7879, CG8407, Cpr73D, ko\n\nTWO-HYBRID INTERACTIONS:\n  CG7879--CG8407\n  CG8407--Cpr73D\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7879, CG8407, Cpr73D, ko\n\nTWO-HYBRID INTERACTIONS:\n  CG7879--CG8407\n  CG8407--Cpr73D\n  CG8407--ko\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15863, ECSIT, Prosbeta5R1\n\nTWO-HYBRID INTERACTIONS:\n  CG15863--ECSIT\n  CG15863--Prosbeta5R1\n  ECSIT--ECSIT\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: CG6726\n\nPredict the interactions for CG6726:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15863--CG6726"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG11796--CG11796\n  CG11796--CG14105\n  CG11796--Cyp9f2\n  CG11796--aPKC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11796--Trp1\n  CG11796--beta4GalNAcTB\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: dimm, eIF-2gamma, nos, osk, vls\n\nTWO-HYBRID INTERACTIONS:\n  dimm--vls\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nos--osk\n  nos--osk\n  nos--vls\n  nos--vls\n  osk--vls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dimm--dimm\n  eIF-2gamma--vls\n  osk--vls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  nos--osk\n\nNETWORK SUMMARY: 5 proteins, 13 interactions\n\nNew protein to integrate: RpS26\n\nPredict the interactions for RpS26:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  RpS26--vls"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Lcp2, Rcd7, jbug, rb\n\nTWO-HYBRID INTERACTIONS:\n  Rcd7--jbug\n  Rcd7--rb\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Lcp2, Rcd7, jbug, rb\n\nTWO-HYBRID INTERACTIONS:\n  Lcp2--Rcd7\n  Rcd7--jbug\n  Rcd7--rb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10321, CG12576, CG42359, Tsp42Ek, zf30C\n\nTWO-HYBRID INTERACTIONS:\n  CG12576--Tsp42Ek\n  CG42359--Tsp42Ek\n  Tsp42Ek--zf30C\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG12576, CG42359, Tsp42Ek, zf30C\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--Tsp42Ek\n  CG12576--Tsp42Ek\n  CG42359--Tsp42Ek\n  Tsp42Ek--zf30C\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG5862, CG1104\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso\n\nTWO-HYBRID INTERACTIONS:\n  CG1104--CG5862\n  CG1104--CG5862\n  CG13445--CG5862\n  CG13461--CG5862\n  CG15459--CG5862\n  CG34191--CG5862\n  CG5862--GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG30291\n  CG1104--CG5862\n  CG30291--CG5862\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12728, CG32756, CG4218, dgrn\n\nTWO-HYBRID INTERACTIONS:\n  CG32756--CG4218\n  CG4218--dgrn\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12728, CG32756, CG4218, dgrn\n\nTWO-HYBRID INTERACTIONS:\n  CG12728--CG4218\n  CG32756--CG4218\n  CG4218--dgrn\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima\n\nTWO-HYBRID INTERACTIONS:\n  CG10631--CG12391\n  CG12391--CG9331\n  CG12391--Hr78\n  CG12391--Sp1\n  CG12391--fd19B\n  Hr78--Sp1\n  Hr78--fd19B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12391--sima\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10362, CG17019, CG6357\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG10205\n\nPredict the interactions for CG10205:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10205--CG10362\n  CG10205--CG17019\n  CG10205--CG6357"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10205, CG10362, CG17019, CG6357\n\nTWO-HYBRID INTERACTIONS:\n  CG10205--CG10362\n  CG10205--CG6357\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10205, CG10362, CG17019, CG6357\n\nTWO-HYBRID INTERACTIONS:\n  CG10205--CG10362\n  CG10205--CG17019\n  CG10205--CG6357\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Octbeta1R, Octbeta2R, dm, rad\n\nTWO-HYBRID INTERACTIONS:\n  Octbeta2R--dm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Octbeta1R--Octbeta2R\n  Octbeta1R--Octbeta2R\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Octbeta1R, Octbeta2R, dm, rad\n\nTWO-HYBRID INTERACTIONS:\n  Octbeta2R--dm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Octbeta1R--Octbeta2R\n  Octbeta1R--Octbeta2R\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Octbeta2R--rad\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n\nTWO-HYBRID INTERACTIONS:\n  CG4622--Ire1\n  Ire1--Vha36-3\n  Ire1--ZnT41F\n  ZnT41F--ZnT41F\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Ire1--ninaE\n  Xbp1--ninaE\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ire1--Xbp1\n  Ire1--bsk\n  Xbp1--bsk\n  bsk--ninaE\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n\nTWO-HYBRID INTERACTIONS:\n  CG13541--Ire1\n  CG4622--Ire1\n  Ire1--Vha36-3\n  Ire1--ZnT41F\n  Ire1--nemy\n  ZnT41F--ZnT41F\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Ire1--Xbp1\n  Ire1--ninaE\n  Xbp1--ninaE\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n  Ire1--Xbp1\n  Ire1--bsk\n  Xbp1--bsk\n  bsk--ninaE\n\nFRET INTERACTIONS:\n  Xbp1--Xbp1\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10822--CG12470\n  CG10822--CG3085\n  CG10822--CG6576\n  CG10822--CG7231\n  CG10822--Drep-1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17666, CG9663, opa\n\nTWO-HYBRID INTERACTIONS:\n  CG17666--CG9663\n  CG17666--opa\n  CG9663--opa\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: CG10032\n\nPredict the interactions for CG10032:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10032--CG9663\n  CG10032--opa"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr\n\nTWO-HYBRID INTERACTIONS:\n  CG8507--Dsk\n  CG9928--Dsk\n  Dsk--Ptr\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr\n\nTWO-HYBRID INTERACTIONS:\n  CG8507--Dsk\n  CG9928--Dsk\n  Dsk--Ptr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CCKLR-17D1--Dsk\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--CG6470\n  CG17744--CG6470\n  CG6272--CG6470\n  CG6272--drm\n  CG6470--Jafrac1\n  CG6470--Traf-like\n  CG6470--drm\n  CG6470--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--CG6470\n  CG17744--CG6470\n  CG6272--CG6470\n  CG6272--drm\n  CG6470--Jafrac1\n  CG6470--Nnf1a\n  CG6470--Pat1\n  CG6470--Traf-like\n  CG6470--drm\n  CG6470--org-1\n  Pat1--Traf-like\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10209, CG15458, Pex19\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG15458\n  CG10209--CG15458\n  CG15458--Pex19\n\nNETWORK SUMMARY: 3 proteins, 5 interactions\n\nNew protein to integrate: CG31958\n\nPredict the interactions for CG31958:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15458--CG31958"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10948, CG6763, Ppn\n\nTWO-HYBRID INTERACTIONS:\n  CG10948--CG6763\n  CG6763--Ppn\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: gammaSnap1\n\nPredict the interactions for gammaSnap1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6763--gammaSnap1\n  gammaSnap1--gammaSnap1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG5516\n  CG14818--CG5516\n  CG14818--Nup54\n  CG5516--Lim1\n  CG5516--Nup54\n  CG5516--Tm1\n  CG5516--dgrn\n  CG5516--l(2)06496\n  Tm1--Tm1\n  Tm1--dgrn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5516--Rheb\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rheb--Rheb\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: Adf1\n\nPredict the interactions for Adf1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Adf1--Adf1\n  Adf1--CG5516\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Adf1--Adf1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG11345--CG4887\n  CG11345--Cip4\n  CG11345--HLH4C\n  CG11345--RtGEF\n  Cip4--Cip4\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12994, CG16853, msb1l\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG16853--msb1l\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: jagn\n\nPredict the interactions for jagn:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG16853--jagn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10032, CG10205, CG17019, rdgA\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG17019\n  CG10205--CG17019\n  CG17019--rdgA\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: srl\n\nPredict the interactions for srl:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG17019--srl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG17019--srl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Aatf, FK506-bp1, l(2)34Fd, sina"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aatf, FK506-bp1, l(2)34Fd, sina\n\nTWO-HYBRID INTERACTIONS:\n  Aatf--l(2)34Fd\n  FK506-bp1--FK506-bp1\n  l(2)34Fd--sina\n  sina--sina\n  sina--sina\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sina--sina\n  sina--sina\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aatf--FK506-bp1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--l(2)34Fd\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 4 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin\n- Network density: approximately 0.32\n- Hub proteins (highly connected): Nha1, Nha2\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--Nha1\n  CG14957--Nha1\n  CG3309--Nha1\n  CG5478--Nha1\n  CG6443--Nha1\n  Nha1--cactin\n  Nha2--Nha2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nha1--Nha2\n  Nha1--Nha2\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13001, CG30089, mus101\n\nTWO-HYBRID INTERACTIONS:\n  CG13001--mus101\n  CG30089--mus101\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Top2\n\nPredict the interactions for Top2:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-FRACTIONATION INTERACTIONS:\n  Top2--Top2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Top2--Top2\n  Top2--mus101\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Top2--mus101\n  Top2--mus101"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bx, CG10051, CG2767, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG2767\n  Moe--Moe\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Ssdp\n  CG2767--CG6084\n  CG2767--Fkbp14\n  CG2767--Moe\n  CG2767--RhoGDI\n  CG2767--yip2\n  CG6084--Fkbp14\n  CG6084--Moe\n  CG6084--RhoGDI\n  Fkbp14--Moe\n  Fkbp14--RhoGDI\n  Fkbp14--yip2\n  Moe--RhoGDI\n  Moe--yip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--CG2767\n  Bx--Ssdp\n  CG2767--Ssdp\n\nNETWORK SUMMARY: 9 proteins, 19 interactions\n\nNew protein to integrate: CG5355\n\nPredict the interactions for CG5355:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG2767--CG5355\n  CG5355--Fkbp14"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2\n\nTWO-HYBRID INTERACTIONS:\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n  SLC9A3R1--SLC9A3R1\n  SLC9A3R1--SLC9A3R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  CFTR--KCNJ1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nFAR WESTERN INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  KCNJ1--SH3RF1\n  SH3RF1--SH3RF1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  CFTR--SLC9A3R2\n  SLC9A3R1--SLC9A3R2\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nNETWORK SUMMARY: 5 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10265, CG17625, FoxP, lola\n- Network density: approximately 1.50\n- Hub proteins (highly connected): lola, FoxP\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10265, CG17625, FoxP, lola\n\nTWO-HYBRID INTERACTIONS:\n  CG10265--CG17625\n  CG17625--FoxP\n  CG17625--lola\n  FoxP--FoxP\n  FoxP--FoxP\n  lola--lola\n  lola--lola\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  lola--lola\n  lola--lola\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10209, CG15458, CG31958, Pex19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG15458, CG31958, Pex19\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG15458\n  CG10209--CG15458\n  CG15458--CG31958\n  CG15458--Pex19\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n- Network density: approximately 0.44\n- Hub proteins (highly connected): l(2)37Ce, CG12042\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n\nTWO-HYBRID INTERACTIONS:\n  CG15631--l(2)37Ce\n  CG17107--l(2)37Ce\n  betaTub60D--l(2)37Ce\n  dyn-p25--l(2)37Ce\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--CG12042\n  Arp10--Dmn\n  Arp10--dyn-p25\n  Arp10--l(2)06496\n  Arp10--l(2)37Ce\n  CG12042--Dmn\n  CG12042--dyn-p25\n  CG12042--l(2)06496\n  CG12042--l(2)37Ce\n  Dmn--dyn-p25\n  Dmn--l(2)06496\n  Dmn--l(2)37Ce\n  l(2)06496--l(2)37Ce\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG12042--Tom20\n  Tom20--Tom20\n  Tom20--l(2)37Ce\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CLDN19, PKD2L1, TNNI3\n\nTWO-HYBRID INTERACTIONS:\n  CLDN19--PKD2L1\n  PKD2L1--TNNI3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PKD2L1--TNNI3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI3\n\nNETWORK SUMMARY: 3 proteins, 4 interactions\n\nNew protein to integrate: TNNI1\n\nPredict the interactions for TNNI1:"
-      },
-      {
-        "role": "assistant",
-        "content": "RECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11796, CG10710\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG11796--CG11796\n  CG11796--CG14105\n  CG11796--Cyp9f2\n  CG11796--aPKC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11796--Trp1\n  CG11796--beta4GalNAcTB\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10809, Cip4, Nup214, Nup58, l(3)05822\n\nTWO-HYBRID INTERACTIONS:\n  CG10809--Cip4\n  CG10809--Nup58\n  CG10809--l(3)05822\n  Cip4--Cip4\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10809, Cip4, Nup214, Nup58, l(3)05822\n\nTWO-HYBRID INTERACTIONS:\n  CG10809--Cip4\n  CG10809--Cip4\n  CG10809--Nup214\n  CG10809--Nup58\n  CG10809--l(3)05822\n  Cip4--Cip4\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10749, CG13510, CG14210, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG13510\n  CG10749--CG14210\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10749--Fas2\n  CG10749--Fas2\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG13510, CG14210, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG13510\n  CG10749--CG14210\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10749--Fas2\n  CG10749--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10214, CG7222, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  Ote--baf\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Hsp60\n  CG10214--Ote\n  CG10214--Sod\n  CG10214--baf\n  CG10214--mtSSB\n  CG10214--p38b\n  CG10214--p38c\n  Sod--mtSSB\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: Df31\n\nPredict the interactions for Df31:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Df31\n  Df31--Hsp60\n  Df31--Sod"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG11409--CG34411\n  CG11409--Obp56a\n  CG11409--isopeptidase-T-3\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG11409--CG34411\n  CG11409--Obp56a\n  CG11409--isopeptidase-T-3\n  CG11409--spict\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1\n\nTWO-HYBRID INTERACTIONS:\n  CG11652--CG16717\n  CG13097--CG16717\n  CG13458--CG16717\n  CG13458--SH3PX1\n  CG16717--SH3PX1\n  CG16717--Trf4-1\n  SH3PX1--SH3PX1\n  SH3PX1--SH3PX1\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12994, CG16853, jagn, msb1l\n\nTWO-HYBRID INTERACTIONS:\n  CG16853--jagn\n  CG16853--msb1l\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, jagn, msb1l\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG16853--jagn\n  CG16853--msb1l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Baldspot, CG15168, CG1746, CG30472, Eaat1, RpS26, Tim17b2, fax, ninaD\n\nNETWORK SUMMARY: 9 proteins, 0 interactions\n\nNew protein to integrate: CG6310\n\nPredict the interactions for CG6310:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Baldspot--CG6310\n  CG15168--CG6310\n  CG1746--CG6310\n  CG30472--CG6310\n  CG6310--Eaat1\n  CG6310--RpS26\n  CG6310--Tim17b2\n  CG6310--fax\n  CG6310--ninaD"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Den1\n  CG14044--Den1\n  CG8145--Den1\n  CG8145--Den1\n  Den1--Nedd8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Den1--Nedd8\n  W--W\n  rpr--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--Nedd8\n  Den1--W\n  Den1--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Den1--Nedd8\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Den1--Nedd8\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--rpr\n\nNETWORK SUMMARY: 7 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11857, CdsA, DIP1, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n\nTWO-HYBRID INTERACTIONS:\n  DIP1--DIP1\n  DIP1--Tango9\n  Tango9--phr\n  phr--phr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CdsA\n  CG11857--OstDelta\n  CG11857--Sc2\n  CG11857--Sec61alpha\n  CG11857--Surf4\n  CG11857--Tango9\n  CdsA--OstDelta\n  CdsA--Sc2\n  CdsA--Sec61alpha\n  CdsA--Surf4\n  CdsA--Tango9\n  OstDelta--Sc2\n  OstDelta--Sec61alpha\n  OstDelta--Surf4\n  OstDelta--Tango9\n  Sc2--Sec61alpha\n  Sc2--Surf4\n  Sc2--Tango9\n  Sec61alpha--Surf4\n  Sec61alpha--Tango9\n  Surf4--Tango9\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nNETWORK SUMMARY: 9 proteins, 26 interactions\n\nNew protein to integrate: Ost48\n\nPredict the interactions for Ost48:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--Ost48\n  CdsA--Ost48\n  Ost48--OstDelta\n  Ost48--Sc2\n  Ost48--Sec61alpha\n  Ost48--Surf4\n  Ost48--Tango9"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11340, Peb, PebII, a6, betaggt-II\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG11340, PebII\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11340, Peb, PebII, a6, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11340--Peb\n  CG11340--PebII\n  CG11340--a6\n  CG11340--betaggt-II\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG13067\n  CG11380--CG15865\n  CG11380--TwdlE\n  CG13067--CG15865\n  CG15865--CG42565\n  CG15865--CG8907\n  CG15865--CG8927\n  CG15865--Cpr72Ea\n  CG15865--Hakai\n  CG15865--TwdlE\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG11138\n\nPredict the interactions for CG11138:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11138--CG15865"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG9170--Pp1-87B\n  CG9170--Pp1alpha-96A\n  CG9170--Sry-alpha\n  CG9170--mGluR\n  CG9170--rau\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pp1-87B--Pp1alpha-96A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG8851--CG9170\n  CG8851--Dysb\n  CG9170--Dysb\n  CG9170--Pp1-87B\n  CG9170--Pp1alpha-96A\n  CG9170--Sry-alpha\n  CG9170--Tm2\n  CG9170--mGluR\n  CG9170--rau\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pp1-87B--Pp1alpha-96A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej\n- Network density: approximately 0.33\n- Hub proteins (highly connected): Phm, nej\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG10589--Phm\n  CG9986--Phm\n  Hey--Phm\n  Met75Ca--Phm\n  Met75Cb--Phm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Phm--nej\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10674, CG1544, Rab9, RpL12, Yp1, aop"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, Rab9, RpL12, Yp1, aop\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG1544--RpL12\n  CG1544--Yp1\n  CG1544--aop\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1544--Rab9\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  aop--aop\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n- Network density: approximately 1.13\n- Hub proteins (highly connected): ARNT, NPAS4\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n\nTWO-HYBRID INTERACTIONS:\n  ARNT--NPAS4\n  ARNT2--NPAS4\n  ARNTL--NPAS4\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ARNT--ARNT\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARNT2--MAGED1\n  ARNT2--NPAS4\n  MAGED1--NPAS4\n\nFRET INTERACTIONS:\n  ARNT--ARNT\n  ARNT2--MAGED1\n  MAGED1--NPAS4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARNT--ARNT\n  ARNT--NPAS4\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NPAS4--TCP1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ARNTL--ARNTL\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ARNT--ARNT\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG10214, Sod\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  Ote--baf\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Df31\n  CG10214--Hsp60\n  CG10214--Ote\n  CG10214--Sod\n  CG10214--baf\n  CG10214--mtSSB\n  CG10214--p38b\n  CG10214--p38c\n  Df31--Hsp60\n  Df31--Sod\n  Sod--mtSSB\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATP13A2, LSM7, NPY, NPY1R\n\nTWO-HYBRID INTERACTIONS:\n  LSM7--NPY1R\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  NPY--NPY1R\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP13A2, LSM7, NPY, NPY1R\n\nTWO-HYBRID INTERACTIONS:\n  ATP13A2--NPY1R\n  LSM7--NPY1R\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  NPY--NPY1R\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1544, Rab9, RpL12, Yp1, aop\n\nTWO-HYBRID INTERACTIONS:\n  CG1544--RpL12\n  CG1544--Yp1\n  CG1544--aop\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1544--Rab9\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  aop--aop\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 5 proteins, 7 interactions\n\nNew protein to integrate: CG10674\n\nPredict the interactions for CG10674:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10674--CG1544"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG11570--Cpr72Ea\n  CG11570--brk\n  CG11570--loco\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG12723\n  CG11570--CG9522\n  CG11570--Cpr72Ea\n  CG11570--brk\n  CG11570--loco\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  Trs20--gry\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Trs20--Trs31\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  Cpr64Ac--Trs20\n  Trs20--Trs31\n  Trs20--Trs31\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trs20--smo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 7 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk\n- Network density: approximately 0.58\n- Hub proteins (highly connected): ttk, CG17292\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Acp53Ea--CG17292\n  CG12393--CG17292\n  CG17292--CG31792\n  CG17292--CG8449\n  CG17292--CG8449\n  CG17292--D19B\n  CG17292--Not10\n  CG17292--rux\n  CG17292--ttk\n  D19B--D19B\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Not10--Not10\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nPCA INTERACTIONS:\n  D19B--D19B\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11412, CG4065, CG5919, Jupiter"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5919, Jupiter\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG11412--CG5919\n  CG11412--Jupiter\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG4270, br\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n\nTWO-HYBRID INTERACTIONS:\n  CG10151--CG4270\n  CG10164--CG4270\n  CG10164--CG4270\n  CG12477--CG4270\n  CG13157--CG4270\n  CG14089--CG4270\n  CG34347--CG4270\n  CG4270--Set2\n  CG4270--br\n  CG4270--kni\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  br--br\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6337, Cp1, CtsB1, Swim, cer, cpb\n\nTWO-HYBRID INTERACTIONS:\n  CG6337--cer\n  CtsB1--cer\n  CtsB1--cer\n  Swim--cer\n  cer--cpb\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Cp1--cer\n  CtsB1--cer\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: CG33276\n\nPredict the interactions for CG33276:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33276--cer"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2\n- Network density: approximately 0.60\n- Hub proteins (highly connected): SLC22A12, PDZK1\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2\n\nTWO-HYBRID INTERACTIONS:\n  PDZK1--SLC22A12\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PDZK1--SLC22A12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATP5B--SLC22A12\n  NDUFA13--SLC22A12\n  SLC22A12--SMAP2\n  SLC22A12--SMAP2\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11380, CG5147, CG6569, Sin, Tom20, eco"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11380, CG5147, CG6569, Sin, Tom20, eco\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG5147\n  CG5147--CG6569\n  CG5147--Sin\n  CG5147--eco\n\nCO-PURIFICATION INTERACTIONS:\n  eco--eco\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5147--Tom20\n  Tom20--Tom20\n  Tom20--eco\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim\n- Network density: approximately 0.42\n- Hub proteins (highly connected): Traf6, CG8188\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim\n\nTWO-HYBRID INTERACTIONS:\n  CG8188--RASSF8\n  CG8188--org-1\n  RASSF8--RASSF8\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  dm--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--Traf6\n  CG8188--Vap-33A\n  CG8188--aop\n  CG8188--dm\n  CG8188--loco\n  CG8188--tau\n  CG8188--tim\n  Traf6--Traf6\n  aop--aop\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13326, Spc105R, lark, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13326, Spc105R, lark, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG13326--Spc105R\n  CG13326--lark\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13326--rti\n  lark--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--thoc7\n  CG15071--CG15071\n  CG15071--thoc7\n  CG32809--thoc7\n  DNApol-epsilon--thoc7\n  beag--thoc7\n  dm--thoc7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18619--thoc7\n  Hpr1--tex\n  Hpr1--thoc7\n  Hpr1--thoc7\n  tex--thoc7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG7206\n  CG10585--Cct2\n  CG10949--CG7206\n  CG10949--Cct2\n  CG7206--Cct2\n  CG7206--Lst8\n  CG7206--MRG15\n  CG7206--Syp\n  Cct2--Lst8\n  Cct2--MRG15\n  Lst8--Syp\n  MRG15--Syp\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG7206--GlyS\n  CG7206--Zpr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG7206\n  CG10585--Cct2\n  CG10949--CG7206\n  CG10949--Cct2\n  CG7206--Cct2\n  CG7206--Lst8\n  CG7206--MRG15\n  CG7206--Syp\n  Cct2--Lst8\n  Cct2--MRG15\n  Lst8--MRG15\n  Lst8--Syp\n  MRG15--Syp\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB\n\nTWO-HYBRID INTERACTIONS:\n  CG5783--ntc\n  PI31--PI31\n  PI31--ntc\n  Vsx2--ntc\n  ntc--skpA\n  ntc--skpB\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cul1--skpA\n  Cul1--skpB\n  PI31--Prosalpha7\n  PI31--ntc\n  skpA--skpB\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cul1--Cul1\n  Cul1--ntc\n  Cul1--skpA\n  PI31--Prosalpha7\n  PI31--Prosalpha7\n  PI31--ntc\n  Prosalpha7--ntc\n  ntc--skpA\n\nNETWORK SUMMARY: 8 proteins, 19 interactions\n\nNew protein to integrate: skpF\n\nPredict the interactions for skpF:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ntc--skpF"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10565, CG11852, CG17819, CG8508\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG11852\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11852--CG17819\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG11852, CG17819, CG8508\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG11852\n  CG11852--CG8508\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11852--CG17819\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CtBP, Lim3, NK7.1, Ubx, abd-A\n- Network density: approximately 1.60\n- Hub proteins (highly connected): CtBP, Ubx\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CtBP, Lim3, NK7.1, Ubx, abd-A\n\nTWO-HYBRID INTERACTIONS:\n  CtBP--CtBP\n  CtBP--NK7.1\n  Lim3--NK7.1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ubx--abd-A\n  Ubx--abd-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n  CtBP--Ubx\n\nPCA INTERACTIONS:\n  CtBP--Ubx\n  CtBP--Ubx\n  CtBP--abd-A\n  NK7.1--Ubx\n  NK7.1--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CtBP--Ubx\n\nNETWORK SUMMARY: 5 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AnxB11, CG10465, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  AnxB11--CG13321\n  AnxB11--CG14408\n  AnxB11--CG2199\n  AnxB11--Hrs\n  AnxB11--Rm62\n  AnxB11--Srp68\n  AnxB11--mei-S332\n  CG10465--CG10465\n  CG10465--CG10465\n  CG2199--Srp68\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: CG12857\n\nPredict the interactions for CG12857:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  AnxB11--CG12857"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7967, CG8010, Sas-4\n\nTWO-HYBRID INTERACTIONS:\n  CG7967--CG8010\n  CG8010--CG8010\n  Sas-4--Sas-4\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7967, CG8010, Sas-4\n\nTWO-HYBRID INTERACTIONS:\n  CG7967--CG8010\n  CG8010--CG8010\n  CG8010--Sas-4\n  Sas-4--Sas-4\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n\nTWO-HYBRID INTERACTIONS:\n  CG3529--CG9795\n  CG3529--MED8\n  CG3529--NC2alpha\n  CG3529--Wbp2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3529--jar\n  CG3529--osk\n  MED8--MED8\n  jar--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n\nTWO-HYBRID INTERACTIONS:\n  CG12428--CG3529\n  CG3529--CG9795\n  CG3529--MED8\n  CG3529--NC2alpha\n  CG3529--Syx7\n  CG3529--Wbp2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12024--CG3529\n  CG3529--jar\n  CG3529--osk\n  MED8--MED8\n  jar--osk\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG3529--jar\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11269, CG13272, Cp38, spi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG13272, Cp38, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG13272\n  CG13272--Cp38\n  CG13272--spi\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti\n- Network density: approximately 0.64\n- Hub proteins (highly connected): corto, EloB\n- Total interactions: approximately 18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6380--EloB\n  EloB--EloC\n  EloB--homer\n  EloC--corto\n  corto--corto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Art8--EloB\n  CG12081--EloB\n  CG12081--EloC\n  EloB--EloC\n  EloB--rti\n  rti--rti\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  EloB--corto\n  EloC--corto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  EloB--EloC\n  EloB--corto\n  EloC--corto\n  corto--corto\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 8 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala\n\nTWO-HYBRID INTERACTIONS:\n  CG10133--CG10133\n  CG10750--Dysb\n  CG10750--Nup62\n  CG10750--Pglym87\n  CG10750--mtacp1\n  CG12985--CG12985\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10133--CG6543\n  CG10750--CG6543\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala\n\nTWO-HYBRID INTERACTIONS:\n  CG10133--CG10133\n  CG10750--CG11656\n  CG10750--CG12985\n  CG10750--Dysb\n  CG10750--Nup62\n  CG10750--Pglym87\n  CG10750--mtacp1\n  CG10750--sala\n  CG12985--CG12985\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10133--CG10750\n  CG10133--CG6543\n  CG10750--CG6543\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG10750--Pglym87\n  CG14232--Pglym87\n  CG14232--TFAM\n  Mlc-c--TFAM\n  Pglym87--TFAM\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17027--Pglym78\n  CG17027--Pglym87\n  Fas2--Pglym87\n  Fas2--Pglym87\n  Mlc-c--Pglym87\n  Mlc-c--zip\n  Mlc-c--zip\n  Pglym78--Pglym87\n  Pglym87--zip\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Mlc-c--zip\n  Mlc-c--zip\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10834, CG11249, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10834--robl62A\n  CG11249--robl62A\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG10927\n\nPredict the interactions for CG10927:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10927--robl62A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b\n\nTWO-HYBRID INTERACTIONS:\n  CG13159--CG17440\n  CG17440--CG33213\n  CG17440--Hakai\n  CG17440--Or98b\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b\n\nTWO-HYBRID INTERACTIONS:\n  CG13159--CG17440\n  CG17440--CG33213\n  CG17440--Hakai\n  CG17440--Mlp84B\n  CG17440--Or98b\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1126, CG14926, CG32819, CycK, Klc, dnd, fbl\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--CG14926\n  CG1126--CG32819\n  CG1126--CycK\n  CG1126--CycK\n  CG1126--Klc\n  CG1126--dnd\n  CG1126--fbl\n  CG1126--fbl\n  Klc--Klc\n\nNETWORK SUMMARY: 7 proteins, 9 interactions\n\nNew protein to integrate: Irbp\n\nPredict the interactions for Irbp:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1126--Irbp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A\n\nDOSAGE RESCUE INTERACTIONS:\n  LSM8--LSM8\n\nTWO-HYBRID INTERACTIONS:\n  COL23A1--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  HNRNPL--HNRNPL\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HNRNPL--HNRNPL\n  PLOD2--PLOD2\n\nCO-FRACTIONATION INTERACTIONS:\n  COLGALT1--PLOD2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  COL23A1--HNRNPL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  COL23A1--PLOD3\n  COLGALT1--PLOD3\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HNRNPL\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--HIST1H1E\n  COL23A1--HIST1H4A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HIST1H4A--HIST1H4A\n  HIST1H4A--HIST1H4A\n  RPL10A--RPL10A\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A\n\nTWO-HYBRID INTERACTIONS:\n  COL23A1--EXOSC8\n  COL23A1--LSM8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  HNRNPL--HNRNPL\n\nDOSAGE RESCUE INTERACTIONS:\n  LSM8--LSM8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HNRNPL--HNRNPL\n  PLOD2--PLOD2\n  PLOD3--PLOD3\n\nCO-FRACTIONATION INTERACTIONS:\n  COLGALT1--PLOD2\n  COLGALT1--PLOD3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  COL23A1--COLGALT1\n  COL23A1--PLOD2\n  COL23A1--PLOD3\n  COLGALT1--PLOD3\n  HIST1H1E--HIST1H4A\n  HIST1H1E--RPL10A\n  HIST1H1E--RPL10A\n  HIST1H4A--HNRNPL\n  HIST1H4A--RPL10A\n  PLOD2--PLOD3\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  COL23A1--HNRNPL\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--HIST1H1E\n  COL23A1--HIST1H4A\n  COL23A1--RPL10A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HIST1H4A\n  HIST1H4A--HIST1H4A\n  RPL10A--RPL10A\n\nNETWORK SUMMARY: 10 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG12012--Pi3K68D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CG12012\n  CG12012--CG4822\n  CG12012--CG5447\n  CG12012--CG7668\n  CG12012--Ndfip\n  CG12012--R\n  CG12012--Syb\n  CG5447--CG7668\n  CG5447--Syb\n  CG7668--Syb\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10164, CG4335, CG7488, Traf6, vir-1\n- Network density: approximately 1.10\n- Hub proteins (highly connected): Traf6, CG7488\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG4335, CG7488, Traf6, vir-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG7488\n  CG4335--CG4335\n  CG4335--CG7488\n  CG4335--CG7488\n  CG7488--Traf6\n  CG7488--vir-1\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 5 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6656, Cyp28d1, Cyp28d2, EDTP, cry"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6656, Cyp28d1, Cyp28d2, EDTP, cry\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d1\n  CG6656--Cyp28d2\n  Cyp28d1--Cyp28d2\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Cyp28d1--cry\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG7206--GlyS\n  CG7206--Zpr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG7206\n  CG10585--Cct2\n  CG10949--CG7206\n  CG10949--Cct2\n  CG7206--Cct2\n  CG7206--Lst8\n  CG7206--MRG15\n  CG7206--Syp\n  Cct2--Lst8\n  Cct2--MRG15\n  Lst8--MRG15\n  Lst8--Syp\n  MRG15--Syp\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ANK1, CREB3L3, ERGIC3, FAM209A, RHAG, TEX29, TP53, UNC93A\n\nTWO-HYBRID INTERACTIONS:\n  ANK1--RHAG\n  CREB3L3--RHAG\n  ERGIC3--RHAG\n  FAM209A--RHAG\n  RHAG--TEX29\n  RHAG--UNC93A\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ANK1--RHAG\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERGIC3--ERGIC3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nFRET INTERACTIONS:\n  CREB3L3--CREB3L3\n  TP53--TP53\n  TP53--TP53\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  RHAG--TP53\n\nNETWORK SUMMARY: 8 proteins, 46 interactions\n\nNew protein to integrate: LMNA\n\nPredict the interactions for LMNA:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--RHAG\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LMNA--LMNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--TP53\n  LMNA--TP53\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nCO-LOCALIZATION INTERACTIONS:\n  LMNA--TP53\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10651, CG11164, CG13928, Dok, Src42A, egl, ptc, puc, shark\n\nTWO-HYBRID INTERACTIONS:\n  CG10651--Dok\n  CG11164--Dok\n  CG13928--Dok\n  Dok--Src42A\n  Dok--ptc\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dok--puc\n  Dok--shark\n  Src42A--puc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src42A--Src42A\n  Src42A--Src42A\n  Src42A--Src42A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Dok--egl\n  Dok--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 9 proteins, 24 interactions\n\nNew protein to integrate: Src64B\n\nPredict the interactions for Src64B:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Dok--Src64B\n  Src64B--Src64B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Src42A--Src64B\n  Src42A--Src64B\n  Src42A--Src64B\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG10754, snf\n- Total interactions: approximately 27"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--CG5514\n  CG10754--dar1\n  CG16941--noi\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10754--CG11985\n  CG10754--CG16941\n  CG10754--noi\n  CG10754--snf\n  CG11985--CG16941\n  CG11985--noi\n  CG11985--snf\n  CG11985--snf\n  CG16941--noi\n  CG16941--snf\n  Ndc80--Nuf2\n  Ndc80--Nuf2\n  noi--snf\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  snf--snf\n\nCO-FRACTIONATION INTERACTIONS:\n  snf--snf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10754--Ndc80\n  CG10754--Ndc80\n  CG10754--Nuf2\n  CG10754--Prp31\n  CG10754--Prp31\n  Ndc80--Prp31\n  Ndc80--Prp31\n  Nuf2--Prp31\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--spartin\n  CG31038--spartin\n  CG33144--spartin\n  Gas8--spartin\n  nmdyn-D7--spartin\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n  spartin--wit\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eps-15--spartin\n  Eps-15--spartin\n  Rab18--spartin\n  futsch--futsch\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab18--spartin\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG16947, Rcd-1r, Vang, pwn\n\nTWO-HYBRID INTERACTIONS:\n  CG16947--pwn\n  Rcd-1r--pwn\n  Vang--Vang\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Vang--pwn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Vang--Vang\n  Vang--Vang\n  Vang--Vang\n\nNETWORK SUMMARY: 4 proteins, 7 interactions\n\nNew protein to integrate: CG8316\n\nPredict the interactions for CG8316:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8316--pwn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n- Network density: approximately 0.38\n- Hub proteins (highly connected): Lapsyn, CtBP\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG11710--Lapsyn\n  CG43691--Lapsyn\n  CG9293--Lapsyn\n  CtBP--CtBP\n  CtBP--Lapsyn\n  Ice--Ice\n  Ice--Ice\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3793--CG7277\n  CG3793--Ice\n  CG3793--Lapsyn\n  CG7277--Ice\n  CG7277--Lapsyn\n  Ice--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lapsyn--rut\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11486, CG11498, bip2, rump\n\nTWO-HYBRID INTERACTIONS:\n  CG11486--CG11498\n  CG11498--rump\n  rump--rump\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11486, CG11498, bip2, rump\n\nTWO-HYBRID INTERACTIONS:\n  CG11486--CG11498\n  CG11498--bip2\n  CG11498--rump\n  rump--rump\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10465\n  CG10465--CG10465\n  CG17162--CG9578\n  CG17162--Pp2B-14D\n  CG9578--CG9578\n  CG9578--Pp2B-14D\n  CG9578--Pph13\n  CG9578--Strn-Mlck\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG9578\n  CG10570--CG9578\n  CG17162--CG9578\n  CG17162--Pp2B-14D\n  CG17325--CG9578\n  CG9578--CG9578\n  CG9578--Pp2B-14D\n  CG9578--Pph13\n  CG9578--Strn-Mlck\n  CG9578--mts\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms\n- Network density: approximately 0.22\n- Hub proteins (highly connected): kin17, CG31807\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--kin17\n  CG13625--kin17\n  CG17162--kin17\n  CG2017--kin17\n  CG31807--CG31807\n  CG31807--kin17\n  Hsp60B--kin17\n  Traf-like--kin17\n  kin17--l(1)sc\n  kin17--lms\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD\n- Network density: approximately 1.14\n- Hub proteins (highly connected): NR3C1, CFTR\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD\n\nTWO-HYBRID INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  IL1RAPL1--NCS1\n  IL1RAPL1--PTPRD\n  NCS1--NCS1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NR3C1--NR3C1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--IL1RAPL1\n  IL1RAPL1--NUDCD2\n  NR3C1--NR3C1\n  NUDCD2--NUDCD2\n\nFRET INTERACTIONS:\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n  NCS1--NCS1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IL1RAPL1--NR3C1\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG17440, Mlp84B\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b\n\nTWO-HYBRID INTERACTIONS:\n  CG13159--CG17440\n  CG17440--CG33213\n  CG17440--Hakai\n  CG17440--Mlp84B\n  CG17440--Or98b\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG32687, CG7519, Corp\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG8003\n\nPredict the interactions for CG8003:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG32687--CG8003\n  CG7519--CG8003\n  CG8003--Corp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10222, CG11322, CG2656, CG3704\n\nTWO-HYBRID INTERACTIONS:\n  CG11322--CG3704\n  CG2656--CG3704\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG11322, CG2656, CG3704\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG3704\n  CG11322--CG3704\n  CG2656--CG3704\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg\n\nTWO-HYBRID INTERACTIONS:\n  CG2678--CG2678\n  CG2678--Mdr49\n  Cpr50Ca--Mdr49\n  Mdr49--Tango6\n  Mdr49--pzg\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hmgcr--Mdr49\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--Mdr49\n  CG2678--CG2678\n  CG2678--Mdr49\n  Cpr50Ca--Mdr49\n  Mdr49--Tango6\n  Mdr49--pzg\n  pzg--pzg\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hmgcr--Mdr49\n\nPCA INTERACTIONS:\n  pzg--pzg\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10176, CG5676, CG8184, Cpr50Cb, Traf6, crb, egr, hep, scrib\n\nTWO-HYBRID INTERACTIONS:\n  CG10176--CG5676\n  CG10176--Cpr50Cb\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--CG8184\n  CG10176--crb\n  CG10176--egr\n  CG10176--hep\n  CG10176--scrib\n  CG8184--Traf6\n  CG8184--egr\n  Traf6--egr\n  Traf6--egr\n  Traf6--egr\n  crb--scrib\n  crb--scrib\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--scrib\n  egr--scrib\n  egr--scrib\n  hep--scrib\n  hep--scrib\n  hep--scrib\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  crb--scrib\n  egr--scrib\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10176--Traf6\n  CG10176--egr\n  CG10176--egr\n  Traf6--Traf6\n  scrib--scrib\n\nNETWORK SUMMARY: 9 proteins, 35 interactions\n\nNew protein to integrate: Syx7\n\nPredict the interactions for Syx7:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--Syx7\n  Syx7--hep"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n\nTWO-HYBRID INTERACTIONS:\n  CG5062--IntS10\n  CG8128--IntS10\n  Cul2--IntS10\n  Cul2--dap\n  IntS10--PGAP5\n  IntS10--dap\n  IntS10--png\n  IntS10--slmo\n  Nek2--Nek2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  png--png\n\nCO-FRACTIONATION INTERACTIONS:\n  Orc6--Orc6\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Orc6--Orc6\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n\nTWO-HYBRID INTERACTIONS:\n  CG5062--IntS10\n  CG8128--IntS10\n  Cul2--IntS10\n  Cul2--dap\n  IntS10--Nek2\n  IntS10--Orc6\n  IntS10--PGAP5\n  IntS10--dap\n  IntS10--png\n  IntS10--slmo\n  Nek2--Nek2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dap--png\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  png--png\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Orc6--Orc6\n\nCO-FRACTIONATION INTERACTIONS:\n  Orc6--Orc6\n\nFRET INTERACTIONS:\n  Orc6--Orc6\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Orc6--Orc6\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Lap1, CG9254\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx\n\nTWO-HYBRID INTERACTIONS:\n  CG13623--Lap1\n  CG2233--Lap1\n  CG9254--Lap1\n  Lap1--Not1\n  Lap1--RpL12\n  Lap1--ssx\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG13005, Blos2\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG13005\n  CG13005--CG13526\n  CG13005--CG14868\n  CG13005--CG14931\n  CG13005--CG33017\n  CG13005--CG7911\n  CG13005--CG8173\n  CG13005--Rcc1\n  CG13005--scu\n  CG33017--scu\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty\n\nTWO-HYBRID INTERACTIONS:\n  CG10154--CG43896\n  CG17107--CG43896\n  CG43896--CG6707\n  CG43896--cact\n  CG43896--gce\n  CG43896--odd\n  cact--cact\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Usp7--Usp7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Usp7--Usp7\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty\n\nTWO-HYBRID INTERACTIONS:\n  CG10154--CG43896\n  CG10154--gce\n  CG17107--CG43896\n  CG43896--CG6707\n  CG43896--Usp7\n  CG43896--cact\n  CG43896--gce\n  CG43896--odd\n  CG43896--sty\n  cact--cact\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  cact--cact\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Usp7--Usp7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Usp7--Usp7\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15306, Vap-33B, ctp\n\nTWO-HYBRID INTERACTIONS:\n  CG15306--Vap-33B\n  CG15306--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 3 proteins, 4 interactions\n\nNew protein to integrate: Cdlc2\n\nPredict the interactions for Cdlc2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15306--Cdlc2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim\n\nTWO-HYBRID INTERACTIONS:\n  CG8188--RASSF8\n  CG8188--org-1\n  RASSF8--RASSF8\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  dm--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--Traf6\n  CG8188--Vap-33A\n  CG8188--aop\n  CG8188--dm\n  CG8188--loco\n  CG8188--tau\n  CG8188--tim\n  Traf6--Traf6\n  aop--aop\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n\nTWO-HYBRID INTERACTIONS:\n  CG13133--CG13133\n  CG13133--CG13667\n  CG13133--CG13667\n  CG13133--CG14317\n  CG13133--CG34198\n  CG13133--Droj2\n  CG13133--Mst84Db\n  CG13133--Mst84Dd\n  CG13133--Mst87F\n  CG13133--Rca1\n  CG13133--metl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima\n\nTWO-HYBRID INTERACTIONS:\n  NHP2--TfIIFalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--TfIIFalpha\n  CG8117--TfIIFbeta\n  S6kII--TfIIFalpha\n  S6kII--TfIIFbeta\n  S6kII--gig\n  TfIIFalpha--gig\n  TfIIFalpha--sima\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima\n\nTWO-HYBRID INTERACTIONS:\n  NHP2--TfIIFalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--TfIIFalpha\n  CG8117--TfIIFbeta\n  S6kII--TfIIFalpha\n  S6kII--TfIIFbeta\n  S6kII--gig\n  TfIIFalpha--TfIIFbeta\n  TfIIFalpha--gig\n  TfIIFalpha--sima\n  TfIIFbeta--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TfIIFalpha--TfIIFbeta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo\n\nTWO-HYBRID INTERACTIONS:\n  GATAe--GstE3\n  GstE3--tamo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2025--GstE3\n  GstE3--GstT1\n  GstE3--RhoGDI\n  GstT1--RhoGDI\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tamo--tamo\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14372, beat-IIa, dm, side"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14372, beat-IIa, dm, side\n\nTWO-HYBRID INTERACTIONS:\n  beat-IIa--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14372--beat-IIa\n  CG14372--beat-IIa\n  beat-IIa--side\n  beat-IIa--side\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl\n\nTWO-HYBRID INTERACTIONS:\n  Chro--Galt\n  Gale--Gale\n  Galt--TTLL3B\n  Galt--bsh\n  UGP--UGP\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galt--sgl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Galt--UGP\n  Galt--UGP\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl\n\nTWO-HYBRID INTERACTIONS:\n  CG31550--Galt\n  Chro--Galt\n  Gale--Gale\n  Galt--Sec24AB\n  Galt--TTLL3B\n  Galt--bsh\n  UGP--UGP\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galt--sgl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gale--Galt\n  Gale--Galt\n  Galt--UGP\n  Galt--UGP\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n\nTWO-HYBRID INTERACTIONS:\n  CG13510--CG15293\n  CG15293--CG32425\n  CG15293--CG40045\n  CG15293--PlexA\n  CG15293--Su(var)205\n  RpS20--l(2)05714\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n\nTWO-HYBRID INTERACTIONS:\n  CG13510--CG15293\n  CG15293--CG18067\n  CG15293--CG32425\n  CG15293--CG40045\n  CG15293--PlexA\n  CG15293--RpS20\n  CG15293--Su(var)205\n  CG15293--l(2)05714\n  CG15293--shg\n  RpS20--l(2)05714\n  l(2)05714--l(2)05714\n  l(2)05714--l(2)05714\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13689, CG31140, ste14\n\nTWO-HYBRID INTERACTIONS:\n  CG13689--ste14\n  CG31140--ste14\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG15908\n\nPredict the interactions for CG15908:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15908--ste14"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n\nTWO-HYBRID INTERACTIONS:\n  CG13196--CG5866\n  CG17666--CG5866\n  CG43367--CG5866\n  CG5866--NimC1\n  CG5866--PlexA\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: Acp62F\n\nPredict the interactions for Acp62F:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Acp62F--CG5866"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11350, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--sxc\n\nNETWORK SUMMARY: 8 proteins, 1 interactions\n\nNew protein to integrate: CG13043\n\nPredict the interactions for CG13043:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11350--CG13043\n  CG13043--CG4896\n  CG13043--CG6353\n  CG13043--CG6380\n  CG13043--Sld5\n  CG13043--fd59A\n  CG13043--spi\n  CG13043--sxc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11134, CG30089, Su(dx), l(3)L1231, yki\n- Network density: approximately 0.70\n- Hub proteins (highly connected): CG11134, Su(dx)\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG30089, Su(dx), l(3)L1231, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--Su(dx)\n  CG11134--l(3)L1231\n  CG11134--yki\n  CG30089--yki\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11380, CG5147, CG6569, Sin, Tom20, eco\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG5147\n  CG5147--CG6569\n  CG5147--Sin\n  CG5147--eco\n\nCO-PURIFICATION INTERACTIONS:\n  eco--eco\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Tom20--eco\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11380, CG5147, CG6569, Sin, Tom20, eco\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG5147\n  CG5147--CG6569\n  CG5147--Sin\n  CG5147--eco\n\nCO-PURIFICATION INTERACTIONS:\n  eco--eco\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5147--Tom20\n  Tom20--Tom20\n  Tom20--eco\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10195, CG18012, CG3107, CG7025\n\nTWO-HYBRID INTERACTIONS:\n  CG10195--CG7025\n  CG18012--CG7025\n  CG3107--CG7025\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: Nop60B\n\nPredict the interactions for Nop60B:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7025--Nop60B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  GstD1--GstD1\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD7\n  GstD10--GstD2\n  GstD4--GstD6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--GstD10\n  GstD1--GstD4\n  GstD1--rti\n  GstD10--GstD2\n  GstD10--GstD9\n  GstD2--GstD7\n  GstD4--GstD5\n  GstD4--GstD7\n  GstD4--rti\n  GstD5--GstD7\n  GstD5--GstD9\n  GstD7--GstD9\n  rti--rti\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GstD2--GstD2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  GstD2--GstD2\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  GstD1--GstD1\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD7\n  GstD10--GstD2\n  GstD10--GstD7\n  GstD4--GstD6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD4\n  GstD1--GstD5\n  GstD1--GstD7\n  GstD1--GstD9\n  GstD1--rti\n  GstD10--GstD2\n  GstD10--GstD4\n  GstD10--GstD9\n  GstD2--GstD4\n  GstD2--GstD5\n  GstD2--GstD7\n  GstD2--GstD9\n  GstD4--GstD5\n  GstD4--GstD7\n  GstD4--GstD9\n  GstD4--rti\n  GstD5--GstD7\n  GstD5--GstD9\n  GstD7--GstD9\n  GstD9--rti\n  rti--rti\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GstD2--GstD2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  GstD2--GstD2\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala\n\nTWO-HYBRID INTERACTIONS:\n  CG10133--CG10133\n  CG10750--CG11656\n  CG10750--CG12985\n  CG10750--Dysb\n  CG10750--Nup62\n  CG10750--Pglym87\n  CG10750--mtacp1\n  CG10750--sala\n  CG12985--CG12985\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10133--CG10750\n  CG10133--CG6543\n  CG10750--CG6543\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11409, CG33056, CG34411, Obp56a, spict\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG11409--CG34411\n  CG11409--Obp56a\n  CG11409--spict\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: isopeptidase-T-3\n\nPredict the interactions for isopeptidase-T-3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11409--isopeptidase-T-3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG10365, CG13084\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG10365--CG12589\n  CG10365--CG13084\n  CG10365--CG32264\n  CG10365--CG3731\n  CG10365--Fem-1\n  CG10365--Prm\n  CG10365--Xrp1\n  CG10365--eIF-5A\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n- Network density: approximately 2.89\n- Hub proteins (highly connected): N, CG14543\n- Total interactions: approximately 130"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG14543\n  CG14153--CG14543\n  CG14543--CG42565\n  CG14543--HLH4C\n  CG14543--N\n  CG14543--RpS26\n  CG14543--Sps2\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14543--Rae1\n  CG14543--Treh\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  Rae1--Treh\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 10 proteins, 130 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, bmm, mrt, th\n\nTWO-HYBRID INTERACTIONS:\n  CG14453--Lsd-1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lsd-1--Lsd-2\n  Lsd-1--mrt\n  Lsd-1--th\n  Lsd-2--bmm\n  Lsd-2--bmm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--Lsd-2\n  Lsd-1--Lsd-2\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  th--th\n\nPCA INTERACTIONS:\n  CG11700--Lsd-1\n  CG11700--Lsd-2\n  Jabba--Jabba\n  Jabba--Lsd-1\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: Ubi-p5E\n\nPredict the interactions for Ubi-p5E:"
-      },
-      {
-        "role": "assistant",
-        "content": "PCA INTERACTIONS:\n  Lsd-1--Ubi-p5E\n  Lsd-2--Ubi-p5E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43\n- Network density: approximately 0.57\n- Hub proteins (highly connected): CG3281, CG8159\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--CG3281\n  CG12470--CG8159\n  CG12470--esn\n  CG3281--CG7386\n  CG3281--CG8159\n  CG3281--esn\n  CG3281--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  CG8159--CG8159\n  CG8159--CG8159\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3281--RpL18A\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb\n\nTWO-HYBRID INTERACTIONS:\n  CG6337--cer\n  CtsB1--cer\n  Swim--cer\n  cer--cpb\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33276--cer\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CtsB1--cer\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb\n\nTWO-HYBRID INTERACTIONS:\n  CG6337--cer\n  CtsB1--cer\n  CtsB1--cer\n  Swim--cer\n  cer--cpb\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33276--cer\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Cp1--cer\n  CtsB1--cer\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bet1, CG11438, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG11438\n  CG11438--CG33333\n  CG11438--CG43129\n  CG11438--CG5104\n  CG11438--CG8668\n  CG11438--Cys\n  CG11438--Rh50\n  CG11438--ng2\n\nNETWORK SUMMARY: 9 proteins, 8 interactions\n\nNew protein to integrate: CG13920\n\nPredict the interactions for CG13920:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11438--CG13920"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n\nTWO-HYBRID INTERACTIONS:\n  FHL3--FHL3\n  FHL3--THEG\n  FHL3--THEG\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--THEG\n  MDFI--THEG\n  TTL--TTL\n  TTL--TTL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LEPREL2--THEG\n  MID1IP1--THEG\n  MTA2--MTA2\n  MTA2--THEG\n  PPP2R2D--THEG\n  PRICKLE3--THEG\n  RPGRIP1L--THEG\n  THEG--TTL\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n\nTWO-HYBRID INTERACTIONS:\n  CG14323--CG31211\n  CG14323--su(w[a])\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--su(w[a])\n  CG31550--su(w[a])\n  CG5343--su(w[a])\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  su(w[a])--w\n  su(w[a])--w\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5343--rictor\n  rictor--su(w[a])\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  polo--polo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  eIF4AIII--su(w[a])\n  mago--su(w[a])\n\nFRET INTERACTIONS:\n  polo--polo\n\nPROTEIN-RNA INTERACTIONS:\n  polo--su(w[a])\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--CG9293\n  CG17244--Liprin-beta\n  CG17244--Mes4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta\n  Taf11--Taf11\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--CG9293\n  CG17244--Liprin-beta\n  CG17244--Mes4\n  CG17244--NC2alpha\n  CG17244--Taf11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta\n  Taf11--Taf11\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A\n\nTWO-HYBRID INTERACTIONS:\n  ANK1--RHAG\n  CREB3L3--RHAG\n  ERGIC3--RHAG\n  FAM209A--RHAG\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--RHAG\n  RHAG--TEX29\n  RHAG--UNC93A\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ANK1--RHAG\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERGIC3--ERGIC3\n  LMNA--LMNA\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nFRET INTERACTIONS:\n  CREB3L3--CREB3L3\n  TP53--TP53\n  TP53--TP53\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--TP53\n  LMNA--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nCO-LOCALIZATION INTERACTIONS:\n  LMNA--TP53\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  RHAG--TP53\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n\nNETWORK SUMMARY: 9 proteins, 61 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atg1, CG10103, CG12082, RpS27A, okr, th\n- Network density: approximately 0.93\n- Hub proteins (highly connected): th, Atg1\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg1, CG10103, CG12082, RpS27A, okr, th\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--CG12082\n  CG12082--okr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg1--CG12082\n  CG12082--RpS27A\n  RpS27A--th\n  th--th\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Atg1--Atg1\n  Atg1--Atg1\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg1--th\n  CG12082--th\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Atg1--CG12082\n\nCO-LOCALIZATION INTERACTIONS:\n  Atg1--CG12082\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Cyp9f2, Kat60, NimC1, Patronin, kat80\n\nTWO-HYBRID INTERACTIONS:\n  Cyp9f2--kat80\n  Kat60--Kat60\n  Kat60--kat80\n  NimC1--kat80\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Kat60--kat80\n  Kat60--kat80\n  Patronin--kat80\n\nNETWORK SUMMARY: 5 proteins, 7 interactions\n\nNew protein to integrate: ttk\n\nPredict the interactions for ttk:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  NimC1--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  kat80--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Klp3A, feo, kek3, neb, pav, sip2\n- Network density: approximately 1.07\n- Hub proteins (highly connected): feo, pav\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Klp3A, feo, kek3, neb, pav, sip2\n\nTWO-HYBRID INTERACTIONS:\n  feo--kek3\n  feo--sip2\n  feo--sip2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Klp3A--feo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Klp3A--feo\n  feo--neb\n  feo--pav\n  feo--sip2\n  neb--pav\n  neb--pav\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  feo--sip2\n  feo--sip2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  feo--sip2\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n\nNETWORK SUMMARY: 6 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acam, CG10799, CG1640, Dif, Ppcs\n\nTWO-HYBRID INTERACTIONS:\n  Acam--CG1640\n  CG1640--Dif\n  CG1640--Ppcs\n  Ppcs--Ppcs\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acam, CG10799, CG1640, Dif, Ppcs\n\nTWO-HYBRID INTERACTIONS:\n  Acam--CG1640\n  CG10799--CG1640\n  CG1640--Dif\n  CG1640--Ppcs\n  Ppcs--Ppcs\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG11722--Elba3\n  CG11722--MRG15\n  CG11722--RtGEF\n  CG11722--betaggt-II\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n\nTWO-HYBRID INTERACTIONS:\n  AGTPBP1--PPFIA4\n  ERC2--PPFIA4\n  ERC2--PPFIA4\n  GIT1--GIT1\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  NCOA2--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  LMNA--LMNA\n  PRC1--PRC1\n  PRC1--PRC1\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GIT1--PLEKHA4\n  LMNA--PLEKHA4\n  PLEKHA4--PPFIA4\n  PPFIA4--PRC1\n  PRC1--PRC1\n\nCO-PURIFICATION INTERACTIONS:\n  PRC1--PRC1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--PPFIA4\n\nNETWORK SUMMARY: 9 proteins, 24 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n\nTWO-HYBRID INTERACTIONS:\n  AGTPBP1--PPFIA4\n  ERC2--PPFIA4\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  NCOA2--PPFIA4\n  PLEKHA4--PLEKHA4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  NCOA2--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  LMNA--LMNA\n  PRC1--PRC1\n  PRC1--PRC1\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GIT1--PLEKHA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PLEKHA4\n  LMNA--PRC1\n  PLEKHA4--PPFIA4\n  PPFIA4--PRC1\n  PRC1--PRC1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nFRET INTERACTIONS:\n  DNAJC5--PPFIA4\n\nCO-PURIFICATION INTERACTIONS:\n  PRC1--PRC1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PPFIA4\n\nNETWORK SUMMARY: 9 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n- Network density: approximately 0.33\n- Hub proteins (highly connected): Sobp, Ndn\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n\nTWO-HYBRID INTERACTIONS:\n  CG11885--Sobp\n  CG5059--CG5059\n  CG5059--Sobp\n  Ndn--Ndn\n  Ndn--Sobp\n  Nplp2--Sobp\n  Sobp--rdo\n  Sobp--so\n  Sobp--so\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpgrip1l--Sobp\n\nCO-FRACTIONATION INTERACTIONS:\n  Rpgrip1l--Sobp\n\nNAN INTERACTIONS:\n  Ser8--Sobp\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG6470, Ada2b\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--CG6470\n  CG17744--CG6470\n  CG6272--CG6470\n  CG6272--drm\n  CG6470--Jafrac1\n  CG6470--Nnf1a\n  CG6470--Pat1\n  CG6470--Traf-like\n  CG6470--drm\n  CG6470--org-1\n  Pat1--Traf-like\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n\nTWO-HYBRID INTERACTIONS:\n  CG14818--CG5516\n  CG5516--Lim1\n  CG5516--Nup54\n  CG5516--Tm1\n  CG5516--dgrn\n  CG5516--l(2)06496\n  Tm1--Tm1\n  Tm1--dgrn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5516--Rheb\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Adf1--Adf1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n\nTWO-HYBRID INTERACTIONS:\n  Adf1--Adf1\n  Adf1--CG5516\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG5516\n  CG14818--CG5516\n  CG14818--Nup54\n  CG5516--Lim1\n  CG5516--Nup54\n  CG5516--Tm1\n  CG5516--dgrn\n  CG5516--l(2)06496\n  Tm1--Tm1\n  Tm1--dgrn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5516--Rheb\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Adf1--Adf1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rheb--Rheb\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7\n- Network density: approximately 0.29\n- Hub proteins (highly connected): thoc7, CG15071\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--thoc7\n  CG15071--CG15071\n  CG15071--thoc7\n  CG32809--thoc7\n  DNApol-epsilon--thoc7\n  beag--thoc7\n  dm--thoc7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18619--thoc7\n  Hpr1--tex\n  Hpr1--thoc7\n  Hpr1--thoc7\n  tex--thoc7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX\n\nTWO-HYBRID INTERACTIONS:\n  HDAC7--TIAF1\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  SMAD4--WWOX\n  TIAF1--TRIB3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  WWOX--WWOX\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  TIAF1--TRIB3\n  TIAF1--TRIB3\n  TIAF1--WWOX\n  TIAF1--WWOX\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  TP53--WWOX\n\nFRET INTERACTIONS:\n  SMAD4--TIAF1\n  SMAD4--WWOX\n  TIAF1--TIAF1\n  TIAF1--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TRIB3--TRIB3\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nNETWORK SUMMARY: 7 proteins, 65 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n\nTWO-HYBRID INTERACTIONS:\n  CG3085--CG33095\n  CG33095--CG6523\n  CG33095--Lmpt\n  CG33095--Rcd-1r\n  CG33095--kermit\n  CG33095--nuf\n  Dlc90F--Dlc90F\n  nuf--nuf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n\nTWO-HYBRID INTERACTIONS:\n  CG3085--CG33095\n  CG33095--CG6523\n  CG33095--Dlc90F\n  CG33095--Lmpt\n  CG33095--Rcd-1r\n  CG33095--Vps28\n  CG33095--kermit\n  CG33095--nuf\n  CG6523--Lmpt\n  Dlc90F--Dlc90F\n  nuf--nuf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33095--fra\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10214, CG5484, CG7222, TwdlL\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG7222, CG10214\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG5484, CG7222, TwdlL\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  CG5484--CG7222\n  CG7222--TwdlL\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1138, Snx1, l(2)37Cg, nudE, scramb2\n\nTWO-HYBRID INTERACTIONS:\n  CG1138--l(2)37Cg\n  CG1138--nudE\n  CG1138--scramb2\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1138, Snx1, l(2)37Cg, nudE, scramb2\n\nTWO-HYBRID INTERACTIONS:\n  CG1138--Snx1\n  CG1138--l(2)37Cg\n  CG1138--nudE\n  CG1138--scramb2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz\n\nTWO-HYBRID INTERACTIONS:\n  CG17344--Dmtn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Actb--Kctd13\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Dmtn--Kctd13\n  Dmtn--Ppp1r9b\n  Dmtn--Usp7\n  Dmtn--Ywhaz\n  Kctd13--Kctd13\n  Kctd13--Ppp1r9b\n  Kctd13--Prkaca\n  Kctd13--Usp7\n  Kctd13--Ywhaz\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Snca\n  Ppp1r9b--Ywhaz\n  Ppp1r9b--Ywhaz\n  Usp7--Usp7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ppp1r9b--Ppp1r9b\n\nCO-FRACTIONATION INTERACTIONS:\n  Actb--Dmtn\n  Dmtn--Golga2\n  Dmtn--Prkaca\n  Dmtn--Snca\n  Snca--Snca\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Kctd13--Kctd13\n  Ppp1r9b--Ppp1r9b\n  Usp7--Usp7\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG7156, CG31064\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--CG7156\n  CG31064--CG31064\n  CG31064--CG7156\n  CG3309--CG7156\n  CG7156--Prosalpha5\n  CG7156--Prosalpha5\n  CG7156--ldbr\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, lbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10887--CG12674\n  CG10887--Dip-B\n  Dip-B--Dip-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--CG1104\n  CG10887--CG31954\n  CG10887--CG9008\n  CG10887--Hsc70-1\n  CG10887--Hsc70-2\n  CG10887--lbl\n  Hsc70-1--Hsc70-2\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: clu\n\nPredict the interactions for clu:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--clu\n  Hsc70-1--clu\n  Hsc70-2--clu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  clu--clu"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11248, CG1137, CG4325, Pi3K21B, RanBPM, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11248--CG1137\n  CG1137--CG4325\n  CG1137--Pi3K21B\n  CG1137--RanBPM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG1137--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: Git\n\nPredict the interactions for Git:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1137--Git"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG32687, CG7519, CG8003, Corp\n\nTWO-HYBRID INTERACTIONS:\n  CG7519--CG8003\n  CG8003--Corp\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32687, CG7519, CG8003, Corp\n\nTWO-HYBRID INTERACTIONS:\n  CG32687--CG8003\n  CG7519--CG8003\n  CG8003--Corp\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10559, CG1690, eIF4E-5, eIF4E-7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG1690, eIF4E-5, eIF4E-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG1690\n  CG1690--eIF4E-5\n  CG1690--eIF4E-7\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n\nTWO-HYBRID INTERACTIONS:\n  BicC--CG11200\n  CG11200--CG33144\n  CG11200--CG7220\n  CG11200--CG8191\n  CG11200--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11200--CG1561\n  CG11200--CG17323\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  BicC--BicC\n\nPROTEIN-RNA INTERACTIONS:\n  BicC--BicC\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1\n\nTWO-HYBRID INTERACTIONS:\n  CG3713--CG6425\n  CG3880--CG6425\n  CG6425--CHIP\n  CG6425--Cpr47Ea\n  CG6425--CycK\n  CG6425--Scp2\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  Scp2--Scp2\n  Scp2--Scp2\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1\n\nTWO-HYBRID INTERACTIONS:\n  CG3713--CG6425\n  CG3880--CG6425\n  CG6425--CHIP\n  CG6425--Cpr47Ea\n  CG6425--CycK\n  CG6425--Scp2\n  CG6425--Taz\n  CG6425--nonA-l\n  CG6425--sip1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  Scp2--Scp2\n  Scp2--Scp2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic\n\nTWO-HYBRID INTERACTIONS:\n  CG14478--CG5144\n  CG3842--CG5144\n  CG5144--Cyp6a9\n  CG5144--bab2\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic\n\nTWO-HYBRID INTERACTIONS:\n  CG14478--CG5144\n  CG3842--CG5144\n  CG5144--Cyp6a9\n  CG5144--Jheh1\n  CG5144--bab2\n  CG5144--bic\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Aatf, FK506-bp1, l(2)34Fd\n\nTWO-HYBRID INTERACTIONS:\n  Aatf--l(2)34Fd\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aatf--FK506-bp1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--l(2)34Fd\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 3 proteins, 9 interactions\n\nNew protein to integrate: sina\n\nPredict the interactions for sina:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  l(2)34Fd--sina\n  sina--sina\n  sina--sina\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sina--sina\n  sina--sina"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG7879\n  CG12470--CG7879\n  CG30122--CG30122\n  CG30122--CG7879\n  CG7879--CG8407\n  CG7879--CG9426\n  CG7879--Pli\n  CG7879--Su(H)\n  CG7879--Vps35\n  CG9426--CG9426\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7879--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Pli--Pli\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG3876--alphaKap4\n  CG7208--alphaKap4\n  Mob2--alphaKap4\n  SmE--alphaKap4\n  alphaKap4--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaKap4--scra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6220, CG8745, CG8997, Traf6, koi, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6220, CG8745, CG8997, Traf6, koi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6220--CG8745\n  CG6220--CG8997\n  CG6220--Traf6\n  CG6220--koi\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  koi--koi\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6220--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG2972--CG7126\n  CG2972--exd\n  CG2972--l(1)G0004\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2972--Tsc1\n  CG2972--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG14011, rau\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG14011--CG44243\n  CG14011--CG7357\n  CG14011--CG7386\n  CG14011--CG9911\n  CG14011--Ef1beta\n  CG14011--RpS17\n  CG14011--cav\n  CG14011--eIF-4a\n  CG14011--rau\n  CG7386--CG7386\n  CG7386--rau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11486, CG11498, rump\n\nTWO-HYBRID INTERACTIONS:\n  CG11486--CG11498\n  CG11498--rump\n  rump--rump\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: bip2\n\nPredict the interactions for bip2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11498--bip2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG10353, mri\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri\n\nTWO-HYBRID INTERACTIONS:\n  CG10353--CG13296\n  CG10353--CG32100\n  CG10353--CG45057\n  CG10353--Nup93-1\n  CG10353--mri\n  CG32100--CG32100\n  mri--mri\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Ns3, kel\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel\n\nTWO-HYBRID INTERACTIONS:\n  CG14868--Ns3\n  CG15152--Ns3\n  CG5537--Ns3\n  Ns3--Pallidin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--Rheb\n  Ns3--Thor\n  Ns3--dm\n  Ns3--gig\n  Rheb--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Ns3--kel\n  Rheb--Rheb\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari\n- Network density: approximately 0.98\n- Hub proteins (highly connected): ttk, Trl\n- Total interactions: approximately 44"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--bab1\n  CG17612--ttk\n  CG32121--bab1\n  CG32121--ttk\n  CG8907--bab1\n  Snr1--bab1\n  Trl--Trl\n  Trl--bab1\n  Trl--ttk\n  Trl--ttk\n  Trl--ttk\n  bab1--bab1\n  bab1--hts\n  bab1--ttk\n  bab1--vari\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nCO-LOCALIZATION INTERACTIONS:\n  Trl--Trl\n  hts--hts\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trl--Ubx\n  Trl--Ubx\n  Trl--Ubx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Trl--Trl\n  Trl--ttk\n  hts--hts\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  Trl--ttk\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Snr1--Trl\n  Trl--ttk\n\nPCA INTERACTIONS:\n  CG32121--bab1\n  CG32121--ttk\n  Trl--Ubx\n  Ubx--bab1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  hts--hts\n\nNETWORK SUMMARY: 10 proteins, 44 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG10841\n  CG10465--CG15547\n  CG10465--CG9578\n  CG10465--Dref\n  CG10465--Mob4\n  CG10465--Snr1\n  CG9578--CG9578\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10465--Leash\n  Dref--Dref\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10126, CG6020, Smn, ced-6, crn, rti, rux"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10126, CG6020, Smn, ced-6, crn, rti, rux\n\nTWO-HYBRID INTERACTIONS:\n  CG10126--ced-6\n  CG10126--crn\n  Smn--Smn\n  Smn--Smn\n  Smn--Smn\n  crn--rux\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--CG6020\n  CG10126--Smn\n  CG10126--rti\n  CG10126--rux\n  CG6020--rti\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Smn--Smn\n  Smn--Smn\n  ced-6--ced-6\n\nNETWORK SUMMARY: 7 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--CG14926\n  CG1126--CG32819\n  CG1126--CycK\n  CG1126--CycK\n  CG1126--Irbp\n  CG1126--Klc\n  CG1126--dnd\n  CG1126--fbl\n  CG1126--fbl\n  Klc--Klc\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Fas2, Pkcdelta, Pvf1, robl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fas2, Pkcdelta, Pvf1, robl\n\nTWO-HYBRID INTERACTIONS:\n  Pkcdelta--Pvf1\n  Pkcdelta--robl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fas2--Pkcdelta\n  Fas2--Pkcdelta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--CG4168\n  CG1041--CG7200\n  CG1041--TwdlE\n  CG1041--ebd1\n  CG1041--kin17\n  CG1041--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rpr--rpr\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1041--Tom20\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--CG4168\n  CG1041--CG7200\n  CG1041--Hakai\n  CG1041--Tango10\n  CG1041--TwdlE\n  CG1041--ebd1\n  CG1041--kin17\n  CG1041--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  rpr--rpr\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1041--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7208, CG7967, Dlc90F, alphaKap4, lush"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7208, CG7967, Dlc90F, alphaKap4, lush\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--CG7967\n  CG7208--Dlc90F\n  CG7208--alphaKap4\n  CG7208--lush\n  Dlc90F--Dlc90F\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n\nTWO-HYBRID INTERACTIONS:\n  CG33095--CG6523\n  CG33095--Dlc90F\n  CG33095--Lmpt\n  CG33095--Rcd-1r\n  CG33095--Vps28\n  CG33095--kermit\n  CG33095--nuf\n  CG6523--Lmpt\n  Dlc90F--Dlc90F\n  nuf--nuf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33095--fra\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: CG3085\n\nPredict the interactions for CG3085:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3085--CG33095"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn\n\nTWO-HYBRID INTERACTIONS:\n  CG6287--CG7387\n  CG7387--Cctgamma\n  CG7387--Cyp4p1\n  CG7387--Ssk\n  CG7387--pn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG7387\n  CG6287--CG7387\n  CG7387--CHORD\n  CG7387--Cctgamma\n  CG7387--Cyp4p1\n  CG7387--E(var)3-9\n  CG7387--Ssk\n  CG7387--pn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7387--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcr-1--w\n  Dcr-1--w\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-1--Gas41\n  Gas41--armi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-1--Gas41\n  Dcr-1--Gas41\n  Gas41--Tip60\n  Gas41--pont\n  Tip60--pont\n  armi--armi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gas41--pont\n  Tip60--pont\n\nTWO-HYBRID INTERACTIONS:\n  CG14818--Gas41\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w\n\nTWO-HYBRID INTERACTIONS:\n  CG14445--Gas41\n  CG14818--Gas41\n  DMAP1--Gas41\n  Gas41--Snx16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcr-1--w\n  Dcr-1--w\n  Gas41--w\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-1--Gas41\n  Gas41--armi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-1--Gas41\n  Dcr-1--Gas41\n  Gas41--Tip60\n  Gas41--pont\n  Tip60--pont\n  Tip60--pont\n  armi--armi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DMAP1--pont\n  Gas41--pont\n  Tip60--pont\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl\n\nTWO-HYBRID INTERACTIONS:\n  CG5110--CG5189\n  CG5110--CG5189\n  CG5110--Dpy-30L2\n  CG5110--Rm62\n  CG5110--corto\n  Rm62--Rm62\n  corto--corto\n  rl--rl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dsor1--rl\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dsor1--rl\n  Dsor1--rl\n  Dsor1--rl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5110--Dsor1\n  CG5110--corto\n  CG5110--rl\n  CG5110--rl\n  Dsor1--rl\n  Rm62--Rm62\n  corto--corto\n  corto--rl\n  corto--rl\n\nCO-LOCALIZATION INTERACTIONS:\n  Dsor1--rl\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 7 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n\nTWO-HYBRID INTERACTIONS:\n  CG10681--CG10681\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  CG7048--mgr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13993--CG7048\n  CG13993--CG7770\n  CG13993--l(3)01239\n  CG13993--mgr\n  CG13993--mst\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--mgr\n  CG7048--mst\n  CG7770--l(3)01239\n  CG7770--mgr\n  CG7770--mst\n  l(3)01239--mgr\n  l(3)01239--mst\n  mgr--mst\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  l(3)01239--mgr\n  l(3)01239--mgr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  l(3)01239--mgr\n  l(3)01239--mgr\n  mgr--mgr\n\nNETWORK SUMMARY: 9 proteins, 27 interactions\n\nNew protein to integrate: CG10635\n\nPredict the interactions for CG10635:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10635--CG10681\n  CG10635--CG10914\n  CG10635--SIP3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10635--CG13993\n  CG10635--CG7048\n  CG10635--CG7770\n  CG10635--l(3)01239\n  CG10635--mgr\n  CG10635--mst"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7\n\nTWO-HYBRID INTERACTIONS:\n  CG12581--CG3085\n  CG12581--CG7987\n  CG12581--Jon65Ai\n  CG12581--Jon65Aiii\n  CG12581--Snr1\n  CG12581--yip7\n  CG3085--Jon99Cii\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7\n\nTWO-HYBRID INTERACTIONS:\n  CG12581--CG3085\n  CG12581--CG7987\n  CG12581--Cka\n  CG12581--Jon25Bii\n  CG12581--Jon65Ai\n  CG12581--Jon65Aiii\n  CG12581--Jon99Cii\n  CG12581--Snr1\n  CG12581--yip7\n  CG3085--Jon99Cii\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11672, CG13142, CG13171, MAGE, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG11672--CG13142\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--Pk17E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11672, CG13142, CG13171, MAGE, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG11672--CG13142\n  CG13142--CG13171\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--Pk17E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, rux, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Acp53Ea--CG17292\n  CG12393--CG17292\n  CG17292--CG31792\n  CG17292--CG8449\n  CG17292--CG8449\n  CG17292--D19B\n  CG17292--rux\n  CG17292--ttk\n  D19B--D19B\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nPCA INTERACTIONS:\n  D19B--D19B\n\nNETWORK SUMMARY: 8 proteins, 19 interactions\n\nNew protein to integrate: Not10\n\nPredict the interactions for Not10:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17292--Not10\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Not10--Not10"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11570, CG13993, CG32201, CG9522, magu"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG13993, CG32201, CG9522, magu\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG13993--CG9522\n  CG32201--CG9522\n  CG9522--magu\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6220, CG8745, CG8997, Traf6, koi, rti\n- Network density: approximately 0.80\n- Hub proteins (highly connected): Traf6, CG6220\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6220, CG8745, CG8997, Traf6, koi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6220--CG8745\n  CG6220--CG8997\n  CG6220--Traf6\n  CG6220--koi\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  koi--koi\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6220--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm\n\nTWO-HYBRID INTERACTIONS:\n  CG2224--ND23\n  ND23--dm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12203--ND23\n  CG9140--ND23\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Pfk\n\nNETWORK SUMMARY: 8 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12203, CG2224, CG9140, ND23, ND75, Pfk, Zw, dm\n\nTWO-HYBRID INTERACTIONS:\n  CG2224--ND23\n  ND23--dm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12203--ND23\n  CG9140--ND23\n  ND23--ND75\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ND23--Pfk\n  ND23--Zw\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb\n- Network density: approximately 0.43\n- Hub proteins (highly connected): cer, CtsB1\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb\n\nTWO-HYBRID INTERACTIONS:\n  CG6337--cer\n  CtsB1--cer\n  CtsB1--cer\n  Swim--cer\n  cer--cpb\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33276--cer\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Cp1--cer\n  CtsB1--cer\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG7196--Fibp\n  Fibp--GstD4\n  Tm1--Tm1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdk5--Mib1\n  Cdk5--Mib1\n  Csnk2b--Mib1\n  Fibp--Mib1\n  Fibp--Tm1\n  Fibp--zip\n  Mib1--Mib1\n  Tm1--zip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Cdk5--Mib1\n  Fibp--OTUD4\n  Mib1--Mib1\n  Mib1--OTUD4\n  Tm1--Tm1\n\nCO-LOCALIZATION INTERACTIONS:\n  Cdk5--Mib1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Mib1--Mib1\n  Mib1--Mib1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  Cdk5--Fibp\n  Csnk2b--Fibp\n  Fibp--Gsk3b\n  Tm1--Tm1\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  OTUD4--OTUD4\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG10075, Tom20\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG10075\n  CG10075--CG11322\n  CG10075--CG9911\n  CG10075--Nc73EF\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10075--Tom20\n  Nc73EF--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--Hsl\n  CG42565--Hsl\n  CG42565--hale\n  CG7724--Hsl\n  Gk--Hsl\n  Hsl--fd64A\n  Hsl--hale\n  hale--hale\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsl--Rab2\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10889, Lapsyn, Traf-like, dod, flw"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, Lapsyn, Traf-like, dod, flw\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG10889--Traf-like\n  CG10889--dod\n  CG10889--flw\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4\n- Network density: approximately 0.53\n- Hub proteins (highly connected): Zasp52, Zasp67\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4\n\nTWO-HYBRID INTERACTIONS:\n  A16--Zasp67\n  Indy--Zasp67\n  PHDP--Zasp67\n  RASSF8--RASSF8\n  RASSF8--Zasp66\n  RASSF8--Zasp67\n  RpS3--Zasp52\n  RpS3--Zasp67\n  Sirup--Zasp67\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp52--Zasp67\n  Zasp67--dgt4\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp66--Zasp67\n  Zasp66--Zasp67\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Zasp52--Zasp66\n\nPCA INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Zasp52--Zasp52\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG33514, CG4896, CTPsyn, Cdc27, La, RpL13A, Sema-1a, cpb, cry\n\nTWO-HYBRID INTERACTIONS:\n  CG33514--La\n  CG4896--La\n  CTPsyn--CTPsyn\n  Cdc27--La\n  La--RpL13A\n  La--cpb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  La--Sema-1a\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Sema-1a--Sema-1a\n\nCO-FRACTIONATION INTERACTIONS:\n  Sema-1a--Sema-1a\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  Sema-1a--Sema-1a\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--La\n  CTPsyn--RpL13A\n  La--cry\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: GalNAc-T1\n\nPredict the interactions for GalNAc-T1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  GalNAc-T1--La"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel\n\nTWO-HYBRID INTERACTIONS:\n  CG14868--Ns3\n  CG15152--Ns3\n  CG5537--Ns3\n  Ns3--Pallidin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--Rheb\n  Ns3--Thor\n  Ns3--dm\n  Ns3--gig\n  Rheb--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Ns3--kel\n  Rheb--Rheb\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11407, CG16817, IntS4, abs, asl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, CG16817, IntS4, abs, asl\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n  asl--asl\n  asl--asl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--CG16817\n  CG11407--abs\n  CG11407--asl\n  CG16817--asl\n  abs--asl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  asl--asl\n  asl--asl\n\nCO-FRACTIONATION INTERACTIONS:\n  asl--asl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  asl--asl\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO1, Mlp84B, Ssl1, ct, mus304\n\nTWO-HYBRID INTERACTIONS:\n  Mlp84B--Ssl1\n  Ssl1--mus304\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ssl1--ct\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, Mlp84B, Ssl1, ct, mus304\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Ssl1\n  Mlp84B--Ssl1\n  Ssl1--mus304\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ssl1--ct\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acam, CG10799, CG1640, Dif, Ppcs\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG1640, Ppcs\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acam, CG10799, CG1640, Dif, Ppcs\n\nTWO-HYBRID INTERACTIONS:\n  Acam--CG1640\n  CG10799--CG1640\n  CG1640--Dif\n  CG1640--Ppcs\n  Ppcs--Ppcs\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2972, CG4887, Cip4, HLH4C, RtGEF\n\nTWO-HYBRID INTERACTIONS:\n  Cip4--Cip4\n\nNETWORK SUMMARY: 5 proteins, 1 interactions\n\nNew protein to integrate: CG11345\n\nPredict the interactions for CG11345:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG11345--CG4887\n  CG11345--Cip4\n  CG11345--HLH4C\n  CG11345--RtGEF"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG13272\n  CG11269--CG6337\n  CG11269--CG9514\n  CG11269--Vha16-2\n  CG11269--Vha16-4\n  CG11269--oc\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG12290\n  CG11269--CG13272\n  CG11269--CG14232\n  CG11269--CG17985\n  CG11269--CG6337\n  CG11269--CG9514\n  CG11269--Vha16-2\n  CG11269--Vha16-4\n  CG11269--oc\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1116, CG18417, CG7985, ph-p\n- Network density: approximately 1.00\n- Hub proteins (highly connected): ph-p, CG18417\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1116, CG18417, CG7985, ph-p\n\nTWO-HYBRID INTERACTIONS:\n  CG1116--CG18417\n  CG18417--CG7985\n  CG18417--ph-p\n  ph-p--ph-p\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ph-p--ph-p\n\nCO-FRACTIONATION INTERACTIONS:\n  ph-p--ph-p\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10219--CG12158\n  CG10219--CG1416\n  CG10219--CG17826\n  CG10219--CG31775\n  CG10219--CG5172\n  CG10219--Obp57c\n  CG10219--Tapdelta\n  CG10219--Tim9a\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1416--Tapdelta\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG10219--smg\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--nonA-l\n  CG5376--CG5376\n  CG5376--nonA-l\n  CG6425--nonA-l\n  CG8128--nonA-l\n  Klc--Klc\n  Klc--nonA-l\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dos--nonA-l\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG11269, CG13272\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG12290\n  CG11269--CG13272\n  CG11269--CG14232\n  CG11269--CG17985\n  CG11269--CG6337\n  CG11269--CG9514\n  CG11269--Vha16-2\n  CG11269--Vha16-4\n  CG11269--oc\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so\n- Network density: approximately 0.56\n- Hub proteins (highly connected): PCNA, Gadd45\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so\n\nTWO-HYBRID INTERACTIONS:\n  CG2144--Gadd45\n  CG7911--Gadd45\n  Gadd45--Hnf4\n  Gadd45--PCNA\n  Gadd45--Rcd-1r\n  Gadd45--so\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7911--PCNA\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--Smg5\n  Gadd45--hep\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12994, CG16853, jagn, msb1l"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, jagn, msb1l\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG16853--jagn\n  CG16853--msb1l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima\n\nTWO-HYBRID INTERACTIONS:\n  NHP2--TfIIFalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--TfIIFalpha\n  CG8117--TfIIFbeta\n  S6kII--TfIIFalpha\n  S6kII--TfIIFbeta\n  S6kII--gig\n  TfIIFalpha--TfIIFbeta\n  TfIIFalpha--gig\n  TfIIFalpha--sima\n  TfIIFbeta--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TfIIFalpha--TfIIFbeta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10550, CG13996, CG1746, CG9986\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10550, CG13996\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10550, CG13996, CG1746, CG9986\n\nTWO-HYBRID INTERACTIONS:\n  CG10550--CG13996\n  CG10550--CG1746\n  CG10550--CG9986\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10298, Mf, rec\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--Mf\n  CG10298--rec\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: rti\n\nPredict the interactions for rti:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10298--rti\n  rti--rti"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S\n\nTWO-HYBRID INTERACTIONS:\n  CG10472--CG2789\n  CG10472--CG33977\n  CG10472--CG42359\n  CG10472--CG8909\n  CG18508--CG18508\n  CG18508--CG33977\n  CG18508--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S\n\nTWO-HYBRID INTERACTIONS:\n  CG10472--CG18508\n  CG10472--CG2789\n  CG10472--CG33977\n  CG10472--CG42359\n  CG10472--CG8909\n  CG10472--PIG-C\n  CG10472--PIG-S\n  CG18508--CG18508\n  CG18508--CG33977\n  CG18508--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG14866--CG7191\n  CG1671--CG7191\n  CG5191--CG7191\n  CG7191--Capa\n  CG7191--Gad1\n  CG7191--Oatp58Db\n  CG7191--Pex19\n  CG7191--lectin-33A\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Den1--Nedd8\n  rpr--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--Nedd8\n  Den1--W\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Den1--Nedd8\n  W--rpr\n  W--rpr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Den1--Nedd8\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--rpr\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Den1\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Den1\n  CG14044--Den1\n  CG8145--Den1\n  CG8145--Den1\n  Den1--Nedd8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Den1--Nedd8\n  W--W\n  rpr--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--Nedd8\n  Den1--W\n  Den1--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Den1--Nedd8\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Den1--Nedd8\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--rpr\n\nNETWORK SUMMARY: 7 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3756, RpIII128, l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3756--RpIII128\n\nNETWORK SUMMARY: 3 proteins, 1 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3756, RpIII128, l(2)37Cg\n\nTWO-HYBRID INTERACTIONS:\n  CG3756--l(2)37Cg\n  CG3756--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3756--RpIII128\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5147, Crk, Sin, Sxl, ftz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5147, Crk, Sin, Sxl, ftz\n\nTWO-HYBRID INTERACTIONS:\n  CG5147--Sin\n  Crk--Sin\n  Sin--Sxl\n  Sin--ftz\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sin--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n\nTWO-HYBRID INTERACTIONS:\n  CG14965--robl22E\n  CG17470--robl22E\n  CG30409--robl22E\n  CG4198--robl22E\n  H2.0--robl22E\n  Idgf4--robl22E\n  Prosbeta3--robl22E\n  robl22E--whd\n\nNETWORK SUMMARY: 9 proteins, 8 interactions\n\nNew protein to integrate: CAP\n\nPredict the interactions for CAP:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n\nTWO-HYBRID INTERACTIONS:\n  CAP--robl22E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--Rpt6R\n  CG15124--Rpt6R\n  CG5026--Rpt6R\n  Ibf2--Ibf2\n  Ibf2--Rpt6R\n  Rlip--Rpt6R\n  Rpt6R--bigmax\n  Rpt6R--fidipidine\n  Rpt6R--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpt6R--atl\n  atl--atl\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  atl--atl\n  atl--atl\n\nCO-FRACTIONATION INTERACTIONS:\n  atl--atl\n\nFRET INTERACTIONS:\n  atl--atl\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  atl--atl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  atl--atl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  atl--atl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n\nTWO-HYBRID INTERACTIONS:\n  CG11327--Galk\n  CG4835--Galk\n  CG9986--Galk\n  Galk--intr\n  Galk--mbc\n  Galk--rdx\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Atpalpha--Galk\n  CG11327--Galk\n  CG4835--Galk\n  CG9986--Galk\n  Galk--intr\n  Galk--mbc\n  Galk--rdx\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galk--Pp2B-14D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2316, DIP1, Tom20, drm, zuc\n- Network density: approximately 1.20\n- Hub proteins (highly connected): zuc, DIP1\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2316, DIP1, Tom20, drm, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG2316--drm\n  DIP1--DIP1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG2316--DIP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--Tom20\n  CG2316--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu\n\nTWO-HYBRID INTERACTIONS:\n  Flo1--NimC1\n  Flo1--Sesn\n  Flo1--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10103--CG10732\n  CG10103--CG6259\n  CG10103--Flo1\n  CG10103--Flo2\n  CG10103--Vps2\n  CG10103--chico\n  CG10732--CG6259\n  CG10732--Flo1\n  CG10732--Flo2\n  CG10732--chico\n  CG6259--Flo1\n  CG6259--Flo2\n  CG6259--Vps2\n  CG6259--chico\n  Flo1--Flo2\n  Flo1--Vps2\n  Flo1--chico\n  Flo2--chico\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10103--CG6259\n  Flo1--Flo2\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--Sirt7\n  Sirt7--ergic53\n  Sirt7--polo\n  Sirt7--rhea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Foxp3--Sirt7\n  Foxp3--Zfp512\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  Recql--Sirt7\n  Rrp7a--Sirt7\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Sirt7\n  Sirt7--Vap-33B\n  Sirt7--ergic53\n  Sirt7--polo\n  Sirt7--rhea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Foxp3--Sirt7\n  Foxp3--Zfp512\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  Recql--Sirt7\n  Rrp7a--Sirt7\n  Sirt7--Zfp512\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11412, CG4065, CG5009, rols"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5009, rols\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG4065--CG5009\n  CG4065--rols\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG13168--CG15423\n  CG13168--CG15549\n  CG13168--CG15578\n  CG13168--CG15919\n  CG13168--HP6\n  CG13168--hoe1\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Kdm2, Rca1, TFAM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 3 proteins, 1 interactions\n\nNew protein to integrate: olf413\n\nPredict the interactions for olf413:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Kdm2--olf413\n  Rca1--olf413\n  TFAM--olf413"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG2091, homer\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer\n\nTWO-HYBRID INTERACTIONS:\n  CG12379--CG2091\n  CG2091--Ef1gamma\n  CG2091--Hs3st-B\n  CG2091--Msp300\n  CG2091--Rgl\n  CG2091--RpII18\n  CG2091--RpS3A\n  CG2091--homer\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11455, CG14044, CG14478, CG6195, dl\n\nTWO-HYBRID INTERACTIONS:\n  CG11455--CG14478\n  CG11455--dl\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11455--CG14044\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11455, CG14044, CG14478, CG6195, dl\n\nTWO-HYBRID INTERACTIONS:\n  CG11455--CG14478\n  CG11455--CG6195\n  CG11455--dl\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11455--CG14044\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 5 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10126, CG6020, Smn, ced-6, crn, rti, rux\n\nTWO-HYBRID INTERACTIONS:\n  CG10126--ced-6\n  CG10126--crn\n  crn--rux\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--CG6020\n  CG10126--rti\n  CG6020--rti\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ced-6--ced-6\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10126, CG6020, Smn, ced-6, crn, rti, rux\n\nTWO-HYBRID INTERACTIONS:\n  CG10126--ced-6\n  CG10126--crn\n  Smn--Smn\n  Smn--Smn\n  Smn--Smn\n  crn--rux\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--CG6020\n  CG10126--Smn\n  CG10126--rti\n  CG10126--rux\n  CG6020--rti\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Smn--Smn\n  Smn--Smn\n  ced-6--ced-6\n\nNETWORK SUMMARY: 7 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, eIF-3p66\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG2061\n  CG2061--CG32694\n  CG2061--CG6287\n  CG2061--CG9986\n  CG2061--Dpy-30L2\n  CG2061--eIF-3p66\n\nNETWORK SUMMARY: 7 proteins, 6 interactions\n\nNew protein to integrate: RpL7\n\nPredict the interactions for RpL7:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG2061--RpL7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin\n- Network density: approximately 0.47\n- Hub proteins (highly connected): Rel, CG10348\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin\n\nTWO-HYBRID INTERACTIONS:\n  Atx-1--CG10348\n  CG10348--CG31612\n  CG10348--CG4168\n  CG10348--CG9902\n  CG10348--CtBP\n  CG10348--Rel\n  CG10348--gus\n  CG10348--tin\n  CG31612--Rel\n  CtBP--CtBP\n  Rel--Rel\n  Rel--tin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CtBP--Rel\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--fbl\n  CG1126--fbl\n  Nup153--fbl\n  fbl--fu\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dnmt1--fbl\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--fbl\n  CG1126--fbl\n  Nup153--fbl\n  fbl--fu\n  fbl--tsr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  fbl--prmt1\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--fbl\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dnmt1--fbl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dnmt1--fbl\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej\n- Network density: approximately 0.33\n- Hub proteins (highly connected): Prat2, ald\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG31961--Prat2\n  CG3332--Prat2\n  CG5734--Prat2\n  Pak--Prat2\n  Prat2--RhoGAP68F\n  Prat2--ald\n  Prat2--nej\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prat--Prat2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  ald--ald\n  nej--nej\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ald--ald\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5151, CG8191, CycG, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  CG5151--CG8191\n  CG5151--mei-S332\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5151, CG8191, CycG, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  CG5151--CG8191\n  CG5151--CycG\n  CG5151--mei-S332\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n\nTWO-HYBRID INTERACTIONS:\n  Cdlc2--Osi6\n  Cyp6a22--Osi6\n  E(spl)mdelta-HLH--E(spl)mdelta-HLH\n  E(spl)mdelta-HLH--Osi6\n  HHEX--Osi6\n  Osi6--obst-A\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG12498--Sans\n  CG14074--CG14074\n  CG14074--Sans\n  CG14074--lwr\n  CG43773--Sans\n  LIMK1--Sans\n  Sans--l(2)k09913\n  Sans--lwr\n  lwr--lwr\n  lwr--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG42593--CG42593\n  CG42593--Sans\n  Cul1--Cul1\n  Cul1--Sans\n  LIMK1--LIMK1\n  Sans--ck\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG42593--CG42593\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--Sans\n  CG42593--ck\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11455, CG14044, CG14478, CG6195, dl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11455, CG14044, CG14478, CG6195, dl\n\nTWO-HYBRID INTERACTIONS:\n  CG11455--CG14478\n  CG11455--CG6195\n  CG11455--dl\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11455--CG14044\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 5 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2641, CG8494, Tom20, fd64A, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2641, CG8494, Tom20, fd64A, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8494--fd64A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2641--CG8494\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--Tom20\n  CG8494--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17777, CG34168, CG3708, CG7381, CG8854, caup\n\nTWO-HYBRID INTERACTIONS:\n  CG17777--CG34168\n  CG17777--CG7381\n  CG34168--CG7381\n  CG3708--CG7381\n  CG7381--CG8854\n  CG7381--caup\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  caup--caup\n\nNETWORK SUMMARY: 6 proteins, 7 interactions\n\nNew protein to integrate: CG15422\n\nPredict the interactions for CG15422:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15422--CG15422\n  CG15422--CG17777\n  CG15422--CG7381"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n\nTWO-HYBRID INTERACTIONS:\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cort\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB3--cdc2\n  CycB3--cdc2\n  Skp2--cdc2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks85A--CycA\n  Cks85A--CycB\n  Cks85A--CycB3\n  Cks85A--cdc2\n  Cks85A--rux\n  CycA--CycB\n  CycA--CycB3\n  CycA--cdc2\n  CycA--rux\n  CycB--CycB3\n  CycB--cdc2\n  CycB--rux\n  CycB3--cdc2\n  CycB3--rux\n  cdc2--rux\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CycA--cort\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--CycB\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycB--cdc2\n  CycB--rux\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n\nNETWORK SUMMARY: 9 proteins, 64 interactions\n\nNew protein to integrate: Cks30A\n\nPredict the interactions for Cks30A:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cks30A--L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--CycB\n  Cks30A--CycB3\n  Cks30A--cdc2\n  Cks30A--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks30A--Skp2\n  Cks30A--cdc2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--cort\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks30A--cdc2\n  Cks30A--cdc2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arp5, CG13022, hh, ptc, rasp, rho, spi\n- Network density: approximately 1.76\n- Hub proteins (highly connected): ptc, hh\n- Total interactions: approximately 37"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG13022, hh, ptc, rasp, rho, spi\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--rasp\n  CG13022--rasp\n  ptc--ptc\n  ptc--ptc\n  rho--rho\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--rasp\n  rasp--rho\n  rho--spi\n  rho--spi\n  rho--spi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--ptc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hh--rasp\n  rasp--spi\n  rasp--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n\nNETWORK SUMMARY: 7 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1\n- Network density: approximately 0.42\n- Hub proteins (highly connected): Sxl, hoe1\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--hoe1\n  CG13168--hoe1\n  CG14183--hoe1\n  CG15631--CG32086\n  CG15631--hoe1\n  CG32086--hoe1\n  CG8840--hoe1\n  CanA1--hoe1\n  Pp2B-14D--hoe1\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CanA1--Pp2B-14D\n\nPROTEIN-RNA INTERACTIONS:\n  Sxl--hoe1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17658, Pat1, scpr-C\n\nTWO-HYBRID INTERACTIONS:\n  CG17658--Pat1\n  CG17658--scpr-C\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: scpr-B\n\nPredict the interactions for scpr-B:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17658--scpr-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  scpr-B--scpr-C"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4\n\nTWO-HYBRID INTERACTIONS:\n  LMO2--LMO2\n  LMO2--LMO2\n  LMO2--LYL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  LYL1--TCF4\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--TAL1\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TCF4\n  TCF3--TCF3\n  TCF3--TCF4\n  TCF3--TCF4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--NFKBIA\n  LYL1--RHOU\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  TAL1--TAL1\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n\nCO-LOCALIZATION INTERACTIONS:\n  NFKB1--NFKB1\n\nCO-FRACTIONATION INTERACTIONS:\n  NFKB1--NFKBIA\n  TCF3--TCF3\n\nFRET INTERACTIONS:\n  TCF3--TCF3\n\nAFFINITY CAPTURE-LUMINESCENCE INTERACTIONS:\n  NFKB1--NFKB1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--LYL1\n  DDX58--TCF3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n\nNETWORK SUMMARY: 9 proteins, 100 interactions\n\nNew protein to integrate: TRIM33\n\nPredict the interactions for TRIM33:"
-      },
-      {
-        "role": "assistant",
-        "content": "RECONSTITUTED COMPLEX INTERACTIONS:\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMO2--TRIM33\n  LMO2--TRIM33\n  LYL1--TRIM33\n  TAL1--TRIM33\n  TCF3--TRIM33\n  TCF4--TRIM33\n  TCF4--TRIM33\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TAL1--TRIM33\n  TAL1--TRIM33\n  TRIM33--TRIM33"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, sxc\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  Rtnl1--Rtnl1\n  beta-Spec--nst\n  betaggt-II--nst\n  eIF-4a--nst\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--eIF-4a\n  Akt1--nst\n  Rtnl1--Rtnl1\n  Rtnl1--nst\n  Rtnl1--nst\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nst--sxc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  htl--nst\n\nNETWORK SUMMARY: 8 proteins, 13 interactions\n\nNew protein to integrate: step\n\nPredict the interactions for step:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  nst--step\n\nFAR WESTERN INTERACTIONS:\n  step--step"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atg8a, CG11474, CG5149, CG7737, Su(var)205, stai\n\nTWO-HYBRID INTERACTIONS:\n  CG11474--CG5149\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Atg8a--CG11474\n  Atg8a--Su(var)205\n  CG11474--CG7737\n  CG11474--Su(var)205\n  CG11474--stai\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 6 proteins, 13 interactions\n\nNew protein to integrate: CG17746\n\nPredict the interactions for CG17746:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG11474--CG17746"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg\n- Network density: approximately 0.43\n- Hub proteins (highly connected): Mdr49, pzg\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG2678, Cpr50Ca, Hmgcr, Mdr49, Tango6, pzg\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--Mdr49\n  CG2678--CG2678\n  CG2678--Mdr49\n  Cpr50Ca--Mdr49\n  Mdr49--Tango6\n  Mdr49--pzg\n  pzg--pzg\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hmgcr--Mdr49\n\nPCA INTERACTIONS:\n  pzg--pzg\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n- Network density: approximately 0.36\n- Hub proteins (highly connected): fs(2)ltoPP43, CG16812\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG16812--CG16812\n  CG16812--Pih1D1\n  CG16812--fs(2)ltoPP43\n  CG2709--CG2709\n  CG2709--fs(2)ltoPP43\n  CG3281--CG7386\n  CG3281--fs(2)ltoPP43\n  CG45068--fs(2)ltoPP43\n  CG5089--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  DNApol-delta--fs(2)ltoPP43\n  Pih1D1--fs(2)ltoPP43\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Obp56a, Sgt\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--Obp56a\n  CG13494--Obp56a\n  CG14684--Obp56a\n  Lcp65Ae--Obp56a\n  Obp56a--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6220, CG8745, Traf6, koi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6220--CG8745\n  CG6220--Traf6\n  CG6220--koi\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  koi--koi\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6220--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 11 interactions\n\nNew protein to integrate: CG8997\n\nPredict the interactions for CG8997:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6220--CG8997"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, l(2)k09913, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG12498--Sans\n  CG14074--CG14074\n  CG14074--Sans\n  CG14074--lwr\n  CG43773--Sans\n  LIMK1--Sans\n  Sans--l(2)k09913\n  Sans--lwr\n  lwr--lwr\n  lwr--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG42593--CG42593\n  CG42593--Sans\n  Cul1--Cul1\n  Cul1--Sans\n  LIMK1--LIMK1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG42593--CG42593\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--Sans\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: ck\n\nPredict the interactions for ck:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sans--ck\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--ck"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATP13A2, LSM7, NPY, NPY1R"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP13A2, LSM7, NPY, NPY1R\n\nTWO-HYBRID INTERACTIONS:\n  ATP13A2--NPY1R\n  LSM7--NPY1R\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  NPY--NPY1R\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bx, CG4822, CG5541, Kr, caps, trn\n- Network density: approximately 1.20\n- Hub proteins (highly connected): caps, Bx\n- Total interactions: approximately 18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG4822, CG5541, Kr, caps, trn\n\nTWO-HYBRID INTERACTIONS:\n  CG4822--caps\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Kr\n  Bx--caps\n  Bx--caps\n  Bx--trn\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--caps\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5541--caps\n  CG5541--caps\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10949, CG14110, CG9948, wdb\n\nTWO-HYBRID INTERACTIONS:\n  CG14110--CG9948\n  CG9948--wdb\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10949, CG14110, CG9948, wdb\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG9948\n  CG14110--CG9948\n  CG9948--wdb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n- Network density: approximately 0.42\n- Hub proteins (highly connected): CG18004, Hsp27\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG18004--CG3342\n  CG18004--Rad51D\n  CG18004--sinah\n  CG18004--vari\n  CG3342--CG3342\n  CG3342--CG3342\n  REG--REG\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18004--Hsp22\n  CG18004--Hsp23\n  CG18004--Hsp27\n  CG18004--Mocs1\n  CG18004--REG\n  Hsp22--Hsp23\n  Hsp22--Hsp27\n  Hsp23--Hsp27\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10344, CG11857, CG12012, CG4822, CG7668, Ndfip, Pi3K68D, R, Syb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG12012--Pi3K68D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CG12012\n  CG12012--CG4822\n  CG12012--CG7668\n  CG12012--Ndfip\n  CG12012--R\n  CG12012--Syb\n  CG7668--Syb\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG5447\n\nPredict the interactions for CG5447:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG12012--CG5447\n  CG5447--CG7668\n  CG5447--Syb"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag1\n  CG2082--Lcp65Ag2\n  CG2082--sa\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag1\n  CG2082--Lcp65Ag2\n  CG2082--Lcp65Ag3\n  CG2082--sa\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup\n\nTWO-HYBRID INTERACTIONS:\n  CG15422--CG15422\n  CG15422--CG17777\n  CG15422--CG7381\n  CG17777--CG7381\n  CG3708--CG7381\n  CG7381--caup\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  caup--caup\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup\n\nTWO-HYBRID INTERACTIONS:\n  CG15422--CG15422\n  CG15422--CG17777\n  CG15422--CG7381\n  CG17777--CG34168\n  CG17777--CG7381\n  CG34168--CG7381\n  CG3708--CG7381\n  CG7381--CG8854\n  CG7381--caup\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  caup--caup\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG32687, CG7519, CG8003, Corp"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32687, CG7519, CG8003, Corp\n\nTWO-HYBRID INTERACTIONS:\n  CG32687--CG8003\n  CG7519--CG8003\n  CG8003--Corp\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n- Network density: approximately 0.49\n- Hub proteins (highly connected): Tollo, Rel\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--Tollo\n  CG9133--Tollo\n  CG9467--Tollo\n  Rel--Rel\n  Su(var)3-9--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dredd--Dredd\n  Rel--Rel\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dredd--Rel\n  Dredd--Rel\n  Dredd--Tollo\n  Dredd--Tollo\n  Rel--Tollo\n  Rel--Tollo\n  Toll-7--Tollo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tollo--dpp\n  Tollo--dpp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Dredd--Dredd\n  Dredd--Rel\n  Dredd--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nCO-LOCALIZATION INTERACTIONS:\n  18w--Tollo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dredd--Dredd\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10947, CG32354, Vm26Aa, neur"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10947, CG32354, Vm26Aa, neur\n\nTWO-HYBRID INTERACTIONS:\n  CG10947--CG32354\n  CG10947--Vm26Aa\n  CG10947--neur\n  neur--neur\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  neur--neur\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG34324--Cpr64Ad\n  CG34324--Mst87F\n  CG34324--Mst98Ca\n  CG34324--NimC3\n  CG34324--rev7\n  CG34324--sxc\n  CG9572--Cpr64Ad\n  rev7--rev7\n  rev7--rev7\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG17826--CG34324\n  CG17826--Cpr64Ad\n  CG34324--CG9572\n  CG34324--Cpr64Ad\n  CG34324--Mst87F\n  CG34324--Mst98Ca\n  CG34324--Mst98Cb\n  CG34324--NimC3\n  CG34324--rev7\n  CG34324--sxc\n  CG9572--Cpr64Ad\n  rev7--rev7\n  rev7--rev7\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG11125--CG33970\n  CG11125--Cdlc2\n  CG11125--Cdlc2\n  CG11125--ctp\n  CG11125--m-cup\n  CG11125--vari\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11345, CG2972, CG7126, Tsc1, gig, l(1)G0004\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG2972--CG7126\n  CG2972--l(1)G0004\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2972--Tsc1\n  CG2972--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n\nNETWORK SUMMARY: 6 proteins, 12 interactions\n\nNew protein to integrate: exd\n\nPredict the interactions for exd:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG2972--exd"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3709, CG4325, CG7407, CG9288, MBD-R2\n\nTWO-HYBRID INTERACTIONS:\n  CG9288--MBD-R2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3709--CG7407\n  CG3709--CG9288\n  CG4325--CG9288\n  CG7407--CG9288\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Ef1alpha48D\n\nPredict the interactions for Ef1alpha48D:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9288--Ef1alpha48D"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1635, CG1638, CG31961, CG7878, Vps37B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, CG1638, CG31961, CG7878, Vps37B\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--CG1638\n  CG1638--CG31961\n  CG1638--CG7878\n  CG1638--Vps37B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm\n- Network density: approximately 0.43\n- Hub proteins (highly connected): Cht9, Rtnl1\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm\n\nTWO-HYBRID INTERACTIONS:\n  CG12773--Cht9\n  CG14968--Cht9\n  Cht9--RpL29\n  Cht9--Rtnl1\n  Cht9--Tpi\n  Cht9--cher\n  Cht9--crm\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Tpi\n  Rtnl1--Tpi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tpi--Tpi\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, beag, dm, tex, thoc7\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--thoc7\n  CG15071--CG15071\n  CG15071--thoc7\n  CG32809--thoc7\n  DNApol-epsilon--thoc7\n  beag--thoc7\n  dm--thoc7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18619--thoc7\n  tex--thoc7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: Hpr1\n\nPredict the interactions for Hpr1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Hpr1--tex\n  Hpr1--thoc7\n  Hpr1--thoc7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5274, CycK, IntS10, L, cup, gro"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5274, CycK, IntS10, L, cup, gro\n\nTWO-HYBRID INTERACTIONS:\n  CG5274--CycK\n  CG5274--IntS10\n  CG5274--L\n  CG5274--cup\n  CG5274--gro\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG10365--CG12589\n  CG10365--CG13084\n  CG10365--CG32264\n  CG10365--CG3731\n  CG10365--Prm\n  CG10365--eIF-5A\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG10365--CG12589\n  CG10365--CG13084\n  CG10365--CG32264\n  CG10365--CG3731\n  CG10365--Fem-1\n  CG10365--Prm\n  CG10365--Xrp1\n  CG10365--eIF-5A\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11417, Pi3K21B, RpS11, Rtnl1, dos, gig, kel, phl, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG11417--RpS11\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Pi3K21B\n  CG11417--Rtnl1\n  CG11417--Rtnl1\n  CG11417--dos\n  CG11417--gig\n  CG11417--phl\n  CG11417--rictor\n  RpS11--gig\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11417--kel\n  kel--kel\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: Tsc1\n\nPredict the interactions for Tsc1:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Tsc1\n  RpS11--Tsc1\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah\n\nTWO-HYBRID INTERACTIONS:\n  Oda--sowah\n  RhoGAP92B--sowah\n  Traf-like--sowah\n  Traf-like--sowah\n  par-6--sowah\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah\n\nTWO-HYBRID INTERACTIONS:\n  CG13083--sowah\n  CG34168--sowah\n  Oda--sowah\n  RhoGAP92B--sowah\n  Traf-like--sowah\n  Traf-like--sowah\n  par-6--sowah\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7206, CG8851, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG8851--Dysb\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pp1-87B--Pp1alpha-96A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 9 proteins, 4 interactions\n\nNew protein to integrate: CG9170\n\nPredict the interactions for CG9170:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG8851--CG9170\n  CG9170--Dysb\n  CG9170--Pp1-87B\n  CG9170--Pp1alpha-96A\n  CG9170--Sry-alpha\n  CG9170--Tm2\n  CG9170--mGluR\n  CG9170--rau"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG4576, Or45a, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG4576--Or45a\n  Or45a--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: FucTB\n\nPredict the interactions for FucTB:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  FucTB--Or45a"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11381, CG8368, MCPH1, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11381--CG8368\n  CG11381--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11381, CG8368, MCPH1, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11381--CG8368\n  CG11381--MCPH1\n  CG11381--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n\nTWO-HYBRID INTERACTIONS:\n  CG14853--CG15365\n  CG14853--CG6287\n  CG14853--CG7386\n  CG14853--CG8349\n  CG14853--Cpr50Ca\n  CG14853--Gclm\n  CG14853--RpL7\n  CG14853--morgue\n  CG14853--spas\n  CG7386--CG7386\n  CG8349--CG8349\n\nCO-FRACTIONATION INTERACTIONS:\n  spas--spas\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spas--spas\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15863, CG6726, ECSIT, Prosbeta5R1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15863, CG6726, ECSIT, Prosbeta5R1\n\nTWO-HYBRID INTERACTIONS:\n  CG15863--CG6726\n  CG15863--ECSIT\n  CG15863--Prosbeta5R1\n  ECSIT--ECSIT\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG12470--CG1461\n  CG1461--CG1461\n  CG1461--CG17325\n  CG1461--CG8907\n  CG1461--koi\n  koi--koi\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG12470--CG1461\n  CG1461--CG1461\n  CG1461--CG17325\n  CG1461--CG8907\n  CG1461--Elba3\n  CG1461--Snr1\n  CG1461--koi\n  CG1461--simj\n  koi--koi\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11381, CG8368, MCPH1, Sgt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11381, CG8368, MCPH1, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11381--CG8368\n  CG11381--MCPH1\n  CG11381--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10721, CG1503, Hdac3, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG1503--Hdac3\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG1503--W\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nNETWORK SUMMARY: 5 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, Hdac3, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG1503--Hdac3\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG1503--W\n  CG1503--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n- Network density: approximately 0.33\n- Hub proteins (highly connected): Tbc1d15-17, Rab5\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n\nTWO-HYBRID INTERACTIONS:\n  Atg8b--Tbc1d15-17\n  Hrs--Tbc1d15-17\n  Tbc1d15-17--spartin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7407--Dmn\n  CG7407--Tbc1d15-17\n  Dmn--Tbc1d15-17\n  Rab11--Tbc1d15-17\n  Rab14--Tbc1d15-17\n  Rab5--Tbc1d15-17\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dmn--Rab5\n  Rab11--Rab5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rab5--Tbc1d15-17\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rab11--Tom20\n  Tbc1d15-17--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG42565--Hsl\n  CG42565--hale\n  Gk--Hsl\n  Hsl--fd64A\n  hale--hale\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsl--Rab2\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--Hsl\n  CG42565--Hsl\n  CG42565--hale\n  CG7724--Hsl\n  Gk--Hsl\n  Hsl--fd64A\n  Hsl--hale\n  hale--hale\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsl--Rab2\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, stau, ttm50\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--Spred\n  CG10209--Vsx2\n  CG9331--Spred\n  Pms2--Spred\n  Spred--Vsx2\n  Spred--angel\n  Spred--hale\n  Spred--ttm50\n  Vsx2--hale\n  hale--hale\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Spred--stau\n  stau--stau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stau--stau\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: ms(3)K81\n\nPredict the interactions for ms(3)K81:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Spred--ms(3)K81"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CLDN19, PKD2L1, TNNI1, TNNI3\n\nTWO-HYBRID INTERACTIONS:\n  CLDN19--PKD2L1\n  PKD2L1--TNNI3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI1\n  PKD2L1--TNNI3\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CLDN19, PKD2L1, TNNI1, TNNI3\n\nTWO-HYBRID INTERACTIONS:\n  CLDN19--PKD2L1\n  PKD2L1--TNNI3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PKD2L1--TNNI3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI1\n  PKD2L1--TNNI3\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6569, MFS16, mmy, slgA\n- Network density: approximately 0.67\n- Hub proteins (highly connected): MFS16, mmy\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6569, MFS16, mmy, slgA\n\nTWO-HYBRID INTERACTIONS:\n  MFS16--slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--MFS16\n  CG6569--mmy\n  MFS16--mmy\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n\nTWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n  E(spl)mdelta-HLH--E(spl)mdelta-HLH\n  E(spl)mdelta-HLH--Osi6\n  HHEX--Osi6\n  Osi6--obst-A\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Cdlc2\n\nPredict the interactions for Cdlc2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cdlc2--Osi6"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7386, Npc1b, RpS25, bowl, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG7386--Npc1b\n  Npc1b--RpS25\n  Npc1b--bowl\n  Npc1b--eIF-5A\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: odd\n\nPredict the interactions for odd:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Npc1b--odd"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5343, Galt, TTLL3B\n\nTWO-HYBRID INTERACTIONS:\n  Galt--TTLL3B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG5343--TTLL3B\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG9902\n\nPredict the interactions for CG9902:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9902--TTLL3B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5343, CG9902, Galt, TTLL3B\n\nTWO-HYBRID INTERACTIONS:\n  Galt--TTLL3B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG5343--TTLL3B\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5343, CG9902, Galt, TTLL3B\n\nTWO-HYBRID INTERACTIONS:\n  CG9902--TTLL3B\n  Galt--TTLL3B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG5343--TTLL3B\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13689, CG15908, CG31140, ste14\n- Network density: approximately 0.50\n- Hub proteins (highly connected): ste14, CG13689\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13689, CG15908, CG31140, ste14\n\nTWO-HYBRID INTERACTIONS:\n  CG13689--ste14\n  CG15908--ste14\n  CG31140--ste14\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n\nTWO-HYBRID INTERACTIONS:\n  ARNT2--NPAS4\n  ARNTL--NPAS4\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ARNT--ARNT\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARNT2--MAGED1\n  ARNT2--NPAS4\n\nFRET INTERACTIONS:\n  ARNT--ARNT\n  ARNT2--MAGED1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARNT--ARNT\n  ARNT--NPAS4\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NPAS4--TCP1\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n\nTWO-HYBRID INTERACTIONS:\n  ARNT--NPAS4\n  ARNT2--NPAS4\n  ARNTL--NPAS4\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ARNT--ARNT\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARNT2--MAGED1\n  ARNT2--NPAS4\n  MAGED1--NPAS4\n\nFRET INTERACTIONS:\n  ARNT--ARNT\n  ARNT2--MAGED1\n  MAGED1--NPAS4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARNT--ARNT\n  ARNT--NPAS4\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NPAS4--TCP1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ARNTL--ARNTL\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ARNT--ARNT\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGEF11--PLXNB3\n  ARHGEF11--PLXNB3\n  BTBD3--BTBD3\n  CUL7--PLXNB3\n  DSCR9--SPOCK2\n  MAGI2--PLXNB3\n  MAGI3--PLXNB3\n  PLXNB3--SPOCK2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARHGEF11--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  PLXNB3--RNF123\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGEF11--PLXNB3\n  ARHGEF11--PLXNB3\n  BTBD3--BTBD3\n  BTBD3--PLXNB3\n  CUL7--PLXNB3\n  DSCR9--PLXNB3\n  DSCR9--SPOCK2\n  HSPA13--PLXNB3\n  MAGI2--PLXNB3\n  MAGI3--PLXNB3\n  PLXNB3--SPOCK2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARHGEF11--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL7--CUL7\n  CUL7--CUL7\n  CUL7--CUL7\n  MAGI3--RNF123\n  PLXNB3--RNF123\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33\n- Network density: approximately 2.49\n- Hub proteins (highly connected): NFKB1, NFKBIA\n- Total interactions: approximately 112"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33\n\nTWO-HYBRID INTERACTIONS:\n  LMO2--LMO2\n  LMO2--LMO2\n  LMO2--LYL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  LYL1--TCF4\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TRIM33\n  LMO2--TRIM33\n  LYL1--TAL1\n  LYL1--TRIM33\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TRIM33\n  TCF3--TCF3\n  TCF3--TCF4\n  TCF3--TCF4\n  TCF3--TRIM33\n  TCF4--TRIM33\n  TCF4--TRIM33\n  TRIM33--TRIM33\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--NFKBIA\n  LYL1--RHOU\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF3\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  TAL1--TAL1\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TRIM33\n  TAL1--TRIM33\n  TRIM33--TRIM33\n\nCO-LOCALIZATION INTERACTIONS:\n  NFKB1--NFKB1\n\nCO-FRACTIONATION INTERACTIONS:\n  NFKB1--NFKBIA\n  TCF3--TCF3\n\nFRET INTERACTIONS:\n  TCF3--TCF3\n\nAFFINITY CAPTURE-LUMINESCENCE INTERACTIONS:\n  NFKB1--NFKB1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--LYL1\n  DDX58--TCF3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n\nNETWORK SUMMARY: 10 proteins, 112 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG10927, robl62A\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--CG17162\n  CG10927--CG3225\n  CG10927--CG33129\n  CG10927--CG6020\n  CG10927--Tollo\n  CG10927--alph\n  CG10927--robl62A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10927--Hsp60\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10947, CG32354, Vm26Aa, neur\n- Network density: approximately 0.83\n- Hub proteins (highly connected): neur, CG10947\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10947, CG32354, Vm26Aa, neur\n\nTWO-HYBRID INTERACTIONS:\n  CG10947--CG32354\n  CG10947--Vm26Aa\n  CG10947--neur\n  neur--neur\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  neur--neur\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG42700--Hsp68\n  CG42700--Hsp70Aa\n  CG42700--Hsp70Ab\n  CG42700--Hsp70Bb\n  CG42700--Hsp70Bbb\n  CG42700--Hsp70Bc\n  CG42700--Snr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp68--Hsp70Aa\n\nNETWORK SUMMARY: 8 proteins, 8 interactions\n\nNew protein to integrate: Hsp70Ba\n\nPredict the interactions for Hsp70Ba:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42700--Hsp70Ba\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp70Aa--Hsp70Ba"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11412, CG5919, Jupiter\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG5919\n  CG11412--Jupiter\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG4065\n\nPredict the interactions for CG4065:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: FHL3, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n\nTWO-HYBRID INTERACTIONS:\n  FHL3--FHL3\n  FHL3--THEG\n  FHL3--THEG\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--THEG\n  MDFI--THEG\n  TTL--TTL\n  TTL--TTL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MID1IP1--THEG\n  MTA2--MTA2\n  MTA2--THEG\n  PPP2R2D--THEG\n  PRICKLE3--THEG\n  RPGRIP1L--THEG\n  THEG--TTL\n\nNETWORK SUMMARY: 9 proteins, 17 interactions\n\nNew protein to integrate: LEPREL2\n\nPredict the interactions for LEPREL2:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  LEPREL2--THEG"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10732--CG11454\n  CG11454--CG12470\n  CG11454--CG15771\n  CG11454--CG17599\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG17599--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10732--CG11454\n  CG11454--CG12470\n  CG11454--CG13083\n  CG11454--CG15771\n  CG11454--CG17599\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Dyb\n  CG11454--Ibf2\n  CG11454--Su(var)3-7\n  CG13083--CG17599\n  CG17599--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, RpL7-like, Tsc1\n\nTWO-HYBRID INTERACTIONS:\n  CG5033--CG5642\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--CG6712\n  CG5033--CG6724\n  CG5033--CG8939\n  CG5033--FK506-bp1\n  CG5033--Non1\n  CG5033--RpL7-like\n  CG5033--Tsc1\n  CG6712--CG8939\n  CG6712--Non1\n  CG6712--RpL7-like\n  CG6724--FK506-bp1\n  CG8939--FK506-bp1\n  CG8939--Non1\n  CG8939--RpL7-like\n  CG8939--Tsc1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--Non1\n  Non1--RpL7-like\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 9 proteins, 24 interactions\n\nNew protein to integrate: Rbm13\n\nPredict the interactions for Rbm13:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--Rbm13\n  CG6712--Rbm13\n  CG6724--Rbm13\n  CG8939--Rbm13\n  Non1--Rbm13\n  Rbm13--RpL7-like"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n  ATPCL--CG11486\n  ATPCL--CG13454\n  ATPCL--CG14253\n  ATPCL--CG30263\n  ATPCL--l(1)G0020\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  ATPCL--sea\n  ATPCL--sea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPCL--sba\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATPCL--Tom20\n  Tom20--Tom20\n  Tom20--sea\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12773, CG14968, Cht9, RpL29, Tpi, cher, crm\n\nTWO-HYBRID INTERACTIONS:\n  CG12773--Cht9\n  CG14968--Cht9\n  Cht9--RpL29\n  Cht9--Tpi\n  Cht9--cher\n  Cht9--crm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tpi--Tpi\n\nNETWORK SUMMARY: 7 proteins, 7 interactions\n\nNew protein to integrate: Rtnl1\n\nPredict the interactions for Rtnl1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cht9--Rtnl1\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Tpi\n  Rtnl1--Tpi"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG10822, Drep-1\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10822--CG12470\n  CG10822--CG3085\n  CG10822--CG6576\n  CG10822--CG7231\n  CG10822--Drep-1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Art8, CG12081, EloB, EloC, corto, homer, rti\n\nTWO-HYBRID INTERACTIONS:\n  EloB--EloC\n  EloB--homer\n  EloC--corto\n  corto--corto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Art8--EloB\n  CG12081--EloB\n  CG12081--EloC\n  EloB--EloC\n  EloB--rti\n  rti--rti\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  EloB--corto\n  EloC--corto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  EloB--EloC\n  EloB--corto\n  EloC--corto\n  corto--corto\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 7 proteins, 17 interactions\n\nNew protein to integrate: CG6380\n\nPredict the interactions for CG6380:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6380--EloB"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3876, CG7208, Mob2, SmE, nop5, scra\n\nNETWORK SUMMARY: 6 proteins, 0 interactions\n\nNew protein to integrate: alphaKap4\n\nPredict the interactions for alphaKap4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3876--alphaKap4\n  CG7208--alphaKap4\n  Mob2--alphaKap4\n  SmE--alphaKap4\n  alphaKap4--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaKap4--scra"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15863, CG6726, ECSIT, Prosbeta5R1\n\nTWO-HYBRID INTERACTIONS:\n  CG15863--CG6726\n  CG15863--ECSIT\n  CG15863--Prosbeta5R1\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15863, CG6726, ECSIT, Prosbeta5R1\n\nTWO-HYBRID INTERACTIONS:\n  CG15863--CG6726\n  CG15863--ECSIT\n  CG15863--Prosbeta5R1\n  ECSIT--ECSIT\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13001, CG30089, Top2, mus101\n\nTWO-HYBRID INTERACTIONS:\n  CG13001--mus101\n\nCO-FRACTIONATION INTERACTIONS:\n  Top2--Top2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Top2--mus101\n  Top2--mus101\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Top2--mus101\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13001, CG30089, Top2, mus101\n\nTWO-HYBRID INTERACTIONS:\n  CG13001--mus101\n  CG30089--mus101\n\nCO-FRACTIONATION INTERACTIONS:\n  Top2--Top2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Top2--Top2\n  Top2--mus101\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Top2--mus101\n  Top2--mus101\n\nNETWORK SUMMARY: 4 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8155, CTPsyn, Chi, RpS27A, TER94, p47\n\nTWO-HYBRID INTERACTIONS:\n  CG8155--p47\n  CTPsyn--CTPsyn\n  Chi--p47\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TER94--p47\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n  RpS27A--TER94\n  RpS27A--p47\n  TER94--TER94\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--p47\n\nNETWORK SUMMARY: 6 proteins, 12 interactions\n\nNew protein to integrate: zuc\n\nPredict the interactions for zuc:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8155--zuc\n  p47--zuc\n  zuc--zuc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arf51F, RanBP3, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Arf51F--RanBP3\n  RanBP3--rdx\n  RanBP3--rdx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 3 proteins, 5 interactions\n\nNew protein to integrate: CG5011\n\nPredict the interactions for CG5011:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5011--RanBP3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6380--EloB\n  EloC--corto\n  corto--corto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Art8--EloB\n  CG12081--EloB\n  EloB--EloC\n  rti--rti\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  EloB--corto\n  EloC--corto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  EloB--EloC\n  corto--corto\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6380--EloB\n  EloB--EloC\n  EloB--homer\n  EloC--corto\n  corto--corto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Art8--EloB\n  CG12081--EloB\n  CG12081--EloC\n  EloB--EloC\n  EloB--rti\n  rti--rti\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  EloB--corto\n  EloC--corto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  EloB--EloC\n  EloB--corto\n  EloC--corto\n  corto--corto\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 8 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10053, CG14354, CG15631, Clamp, HLH4C\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG10053--CG15631\n  CG10053--Clamp\n  CG10053--HLH4C\n  Clamp--Clamp\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Pk17E\n\nPredict the interactions for Pk17E:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10053--Pk17E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale\n- Network density: approximately 0.27\n- Hub proteins (highly connected): Hsl, hale\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--Hsl\n  CG42565--Hsl\n  CG42565--hale\n  CG7724--Hsl\n  Gk--Hsl\n  Hsl--fd64A\n  Hsl--hale\n  hale--hale\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsl--Rab2\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11151, CG7950, Pex5, alpha-Est7\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG11151, alpha-Est7\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11151, CG7950, Pex5, alpha-Est7\n\nTWO-HYBRID INTERACTIONS:\n  CG11151--CG7950\n  CG11151--Pex5\n\nPCA INTERACTIONS:\n  CG11151--alpha-Est7\n  alpha-Est7--alpha-Est7\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, LY9, PTPN11, SH2D1A, Sh2d1b1\n\nTWO-HYBRID INTERACTIONS:\n  AP2M1--LY9\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LY9--PTPN11\n  LY9--SH2D1A\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AP2M1--AP2M1\n  DDX19B--LY9\n  EDEM3--LY9\n  GUSB--LY9\n  HLA-F--LY9\n  PTPN11--PTPN11\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX19B--DDX19B\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: IDUA\n\nPredict the interactions for IDUA:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  IDUA--LY9"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12470, CG8407, Cdlc2, cactin, ctp, polo\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: ko\n\nPredict the interactions for ko:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12470--ko\n  CG8407--ko\n  Cdlc2--ko\n  cactin--ko\n  ctp--ko\n  ko--polo\n  ko--polo"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg\n- Network density: approximately 0.36\n- Hub proteins (highly connected): por, wg\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg\n\nTWO-HYBRID INTERACTIONS:\n  Cyp4p2--por\n  Nsf2--Nsf2\n  Vap-33B--por\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Wnt4--wg\n  nkd--wg\n  nkd--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nsf2--por\n  Nsf2--wg\n  nkd--por\n  nkd--wg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Wnt10--por\n  Wnt2--por\n  Wnt4--por\n  Wnt6--por\n  por--wg\n  por--wg\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1\n- Network density: approximately 1.14\n- Hub proteins (highly connected): UBQLN1, FGF7\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1\n\nTWO-HYBRID INTERACTIONS:\n  DESI1--FGF7\n  DESI1--UBQLN1\n  FGF7--HSPG2\n  FGF7--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FGFR2--FGFR2\n  FGFR2--FGFR2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--Fgfr2\n  FGF7--HSPG2\n  FGF7--PTX3\n  FGFR2--FGFR2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  FGF7--HSPG2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DESI1--UBQLN1\n  UBQLN1--UBQLN1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG31275, Pvf1, robl22E"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31275, Pvf1, robl22E\n\nTWO-HYBRID INTERACTIONS:\n  CG31275--Pvf1\n  CG31275--robl22E\n  CG31275--robl22E\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AdenoK, CG17187, Glycogenin, Taf12\n\nTWO-HYBRID INTERACTIONS:\n  AdenoK--Glycogenin\n  AdenoK--Taf12\n  Glycogenin--Glycogenin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AdenoK--CG17187\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AdenoK, CG17187, Glycogenin, Taf12\n\nTWO-HYBRID INTERACTIONS:\n  AdenoK--Glycogenin\n  AdenoK--Taf12\n  Glycogenin--Glycogenin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AdenoK--CG17187\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf12--Taf12\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG9170, Fmr1, Psn, gb, homer, mGluR, mir-1000\n\nTWO-HYBRID INTERACTIONS:\n  CG9170--mGluR\n  Psn--Psn\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Psn--mGluR\n  gb--mGluR\n  mGluR--mir-1000\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Fmr1--Fmr1\n  Fmr1--Fmr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fmr1--Fmr1\n  homer--mGluR\n\nPCA INTERACTIONS:\n  Psn--Psn\n  Psn--Psn\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Psn--Psn\n\nNETWORK SUMMARY: 7 proteins, 18 interactions\n\nNew protein to integrate: CaMKII\n\nPredict the interactions for CaMKII:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  CaMKII--mGluR\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CaMKII--Fmr1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n\nCO-FRACTIONATION INTERACTIONS:\n  CaMKII--CaMKII"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG17765--CG17765\n  CG17765--grp\n  CG17765--squ\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--CG17765\n  CG17259--Cnx99A\n  CG17259--Glt\n  CG17259--Pi3K68D\n  CG17765--Cnx99A\n  CG17765--Glt\n  CG17765--Pi3K68D\n  CG17765--dsx\n  Cnx99A--Glt\n  Cnx99A--Pi3K68D\n  Glt--Pi3K68D\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  Cpr64Ac--Trs20\n  Trs20--Trs31\n  Trs20--Trs31\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trs20--smo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 7 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor\n\nTWO-HYBRID INTERACTIONS:\n  Atg4a--Atg8b\n  Atg8b--CG11723\n  Atg8b--CG12576\n  Atg8b--CG13204\n  Atg8b--DOR\n  Atg8b--DOR\n  Atg8b--Tbc1d15-17\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Atg8b--dom\n  CG11723--dom\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg8b--DOR\n  Atg8b--dor\n  Atg8b--dor\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG11180--CG14302\n  CG11180--CG31122\n  CG11180--CG3548\n  CG3548--CG3548\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--foxo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tsc1--hpo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  hpo--hpo\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG11180--CG14302\n  CG11180--CG31122\n  CG11180--CG3548\n  CG11180--Sap47\n  CG11180--hpo\n  CG11180--spn-A\n  CG3548--CG3548\n  hpo--hpo\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nFRET INTERACTIONS:\n  hpo--hpo\n\nPCA INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--Tsc1\n  CG11180--foxo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tsc1--hpo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  hpo--hpo\n\nNETWORK SUMMARY: 9 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--CG14926\n  CG1126--CG32819\n  CG1126--CycK\n  CG1126--Irbp\n  CG1126--dnd\n  Klc--Klc\n\nNETWORK SUMMARY: 8 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1126, CG14926, CG32819, CycK, Irbp, Klc, dnd, fbl\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--CG14926\n  CG1126--CG32819\n  CG1126--CycK\n  CG1126--CycK\n  CG1126--Irbp\n  CG1126--Klc\n  CG1126--dnd\n  CG1126--fbl\n  CG1126--fbl\n  Klc--Klc\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG42588, Cks85A, Tequila, vnd\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG42588, vnd\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42588, Cks85A, Tequila, vnd\n\nTWO-HYBRID INTERACTIONS:\n  CG42588--Cks85A\n  CG42588--Tequila\n  CG42588--vnd\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG6733, Hip1\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG6733\n  CG12521--CG6733\n  CG17652--CG6733\n  CG31731--CG6733\n  CG6733--Hip1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG7387, p53\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG7387\n  CG6287--CG7387\n  CG7387--CHORD\n  CG7387--Cctgamma\n  CG7387--Cyp4p1\n  CG7387--E(var)3-9\n  CG7387--Ssk\n  CG7387--pn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7387--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n\nTWO-HYBRID INTERACTIONS:\n  CG5062--IntS10\n  CG8128--IntS10\n  Cul2--IntS10\n  Cul2--dap\n  IntS10--Nek2\n  IntS10--Orc6\n  IntS10--PGAP5\n  IntS10--dap\n  IntS10--png\n  IntS10--slmo\n  Nek2--Nek2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dap--png\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  png--png\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Orc6--Orc6\n\nCO-FRACTIONATION INTERACTIONS:\n  Orc6--Orc6\n\nFRET INTERACTIONS:\n  Orc6--Orc6\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Orc6--Orc6\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10674, CG1544, CG34267, PIG-C, mtd\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG10674, PIG-C\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, CG34267, PIG-C, mtd\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG10674--CG34267\n  CG10674--PIG-C\n  CG10674--mtd\n  CG34267--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-asp--CG12304\n  Aats-gln--SpdS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-asp\n  Aats-arg--Aats-gln\n  Aats-arg--Aats-glupro\n  Aats-arg--Aats-ile\n  Aats-arg--CG12304\n  Aats-arg--CG15100\n  Aats-arg--CG8235\n  Aats-asp--Aats-gln\n  Aats-asp--Aats-glupro\n  Aats-asp--Aats-ile\n  Aats-asp--CG12304\n  Aats-asp--CG15100\n  Aats-asp--CG8235\n  Aats-gln--Aats-glupro\n  Aats-gln--Aats-ile\n  Aats-gln--CG12304\n  Aats-gln--CG15100\n  Aats-gln--CG8235\n  Aats-glupro--Aats-ile\n  Aats-glupro--CG12304\n  Aats-glupro--CG15100\n  Aats-glupro--CG8235\n  Aats-ile--CG15100\n  Aats-ile--CG8235\n  CG12304--CG15100\n  CG12304--CG8235\n  CG15100--CG8235\n\nNETWORK SUMMARY: 9 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5144, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5144--Cyp6a9\n  Cyp6a9--Pak\n  Cyp6a9--RhoGAP68F\n  Cyp6a9--nej\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a21--Cyp6a9\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  nej--nej\n\nNETWORK SUMMARY: 6 proteins, 7 interactions\n\nNew protein to integrate: Cib2\n\nPredict the interactions for Cib2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cib2--Cyp6a9"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--hoe1\n  CG13168--hoe1\n  CG14183--hoe1\n  CG15631--CG32086\n  CG15631--hoe1\n  CG32086--hoe1\n  CG8840--hoe1\n  CanA1--hoe1\n  Pp2B-14D--hoe1\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CanA1--Pp2B-14D\n\nPROTEIN-RNA INTERACTIONS:\n  Sxl--hoe1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bet1, CG10710, CG11796, CG4328, CtBP, Hakai, Pih1D1\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG10710\n  CG10710--CG11796\n  CG10710--CG4328\n  CG10710--CtBP\n  CG10710--Hakai\n  CG10710--Pih1D1\n  CG11796--CG11796\n  CtBP--CtBP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 7 proteins, 10 interactions\n\nNew protein to integrate: CG42369\n\nPredict the interactions for CG42369:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10710--CG42369"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6\n\nTWO-HYBRID INTERACTIONS:\n  CG33052--Ercc1\n  CG33052--Rcd-1r\n  CtBP--CtBP\n  Sas-6--Sas-6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33052--Sas-6\n  CtBP--CtBP\n  CtBP--CtBP\n\nCO-FRACTIONATION INTERACTIONS:\n  Sas-6--Sas-6\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6\n\nTWO-HYBRID INTERACTIONS:\n  CG33052--CtBP\n  CG33052--Ercc1\n  CG33052--Rcd-1r\n  CtBP--CtBP\n  Sas-6--Sas-6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33052--Rab6\n  CG33052--Sas-6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33052--Sas-6\n  CG33052--Sas-6\n  CtBP--CtBP\n  CtBP--CtBP\n\nCO-FRACTIONATION INTERACTIONS:\n  Sas-6--Sas-6\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6766, Fer1HCH, Hrd3, Hsl, apt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6766, Fer1HCH, Hrd3, Hsl, apt\n\nTWO-HYBRID INTERACTIONS:\n  CG6766--Hsl\n  CG6766--apt\n  apt--apt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Fer1HCH\n  CG6766--Hrd3\n  Fer1HCH--Hrd3\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16\n- Network density: approximately 0.42\n- Hub proteins (highly connected): CG7564, rictor\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG7564--CG9098\n  CG7564--x16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7564--Vap-33A\n  foxo--rictor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  foxo--rictor\n  foxo--rictor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--S6kII\n  CG7564--foxo\n  CG7564--gig\n  CG7564--rictor\n  S6kII--gig\n  Vap-33A--rictor\n  rictor--x16\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7564--x16\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68\n\nTWO-HYBRID INTERACTIONS:\n  CG1092--CG8187\n  CG11267--CG8187\n  CG18815--CG8187\n  CG8187--RpL10\n  CG8187--RpL37a\n  CG8187--mei-W68\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL10--RpL37a\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG15067--Eip55E\n  Eip55E--Tango2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG34133--Eip55E\n  Eip55E--Prx2540-2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcp-1--Eip55E\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG15067--Eip55E\n  Dcp1--Eip55E\n  Eip55E--Tango2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG34133--Eip55E\n  Eip55E--Prx2540-2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcp-1--Eip55E\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcp-1--Eip55E\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n\nTWO-HYBRID INTERACTIONS:\n  CG15865--CG8927\n  CG6945--CG8927\n  CG8927--Ir60a\n  CG8927--cindr\n  CG8927--cnc\n  CG8927--spz3\n  Hey--cnc\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n\nTWO-HYBRID INTERACTIONS:\n  CG15865--CG8927\n  CG17162--CG8927\n  CG3225--CG8927\n  CG6945--CG8927\n  CG8927--Hey\n  CG8927--Ir60a\n  CG8927--cindr\n  CG8927--cnc\n  CG8927--spz3\n  Hey--cnc\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33\n\nTWO-HYBRID INTERACTIONS:\n  LMO2--LMO2\n  LMO2--LMO2\n  LMO2--LYL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKBIA\n  TAL1--TCF4\n  TCF3--TCF4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKB1\n  TAL1--TAL1\n  TAL1--TCF3\n  TRIM33--TRIM33\n\nCO-LOCALIZATION INTERACTIONS:\n  NFKB1--NFKB1\n\nCO-FRACTIONATION INTERACTIONS:\n  NFKB1--NFKBIA\n  TCF3--TCF3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--RHOU\n  LYL1--TCF3\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TCF3--TCF3\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LYL1--TRIM33\n  NFKBIA--NFKBIA\n  TAL1--TRIM33\n  TCF3--TCF3\n  TCF4--TRIM33\n  TCF4--TRIM33\n  TRIM33--TRIM33\n\nFRET INTERACTIONS:\n  TCF3--TCF3\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--LYL1\n  DDX58--TCF3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n\nNETWORK SUMMARY: 10 proteins, 48 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33\n\nTWO-HYBRID INTERACTIONS:\n  LMO2--LMO2\n  LMO2--LMO2\n  LMO2--LYL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  LYL1--TCF4\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TRIM33\n  LMO2--TRIM33\n  LYL1--TAL1\n  LYL1--TRIM33\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TRIM33\n  TCF3--TCF3\n  TCF3--TCF4\n  TCF3--TCF4\n  TCF3--TRIM33\n  TCF4--TRIM33\n  TCF4--TRIM33\n  TRIM33--TRIM33\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--NFKBIA\n  LYL1--RHOU\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF3\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  TAL1--TAL1\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TRIM33\n  TAL1--TRIM33\n  TRIM33--TRIM33\n\nCO-LOCALIZATION INTERACTIONS:\n  NFKB1--NFKB1\n\nCO-FRACTIONATION INTERACTIONS:\n  NFKB1--NFKBIA\n  TCF3--TCF3\n\nFRET INTERACTIONS:\n  TCF3--TCF3\n\nAFFINITY CAPTURE-LUMINESCENCE INTERACTIONS:\n  NFKB1--NFKB1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--LYL1\n  DDX58--TCF3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n\nNETWORK SUMMARY: 10 proteins, 112 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG10341, mbl\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10341--Nup58\n  CG10341--Pms2\n  CG10341--Poxm\n  CG10341--Prp19\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10341--mbl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  mbl--mbl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10341--Vdup1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG9170, Tm2\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG8851--CG9170\n  CG8851--Dysb\n  CG9170--Dysb\n  CG9170--Pp1-87B\n  CG9170--Pp1alpha-96A\n  CG9170--Sry-alpha\n  CG9170--Tm2\n  CG9170--mGluR\n  CG9170--rau\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pp1-87B--Pp1alpha-96A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10032, CG17666, CG9663, opa\n- Network density: approximately 0.83\n- Hub proteins (highly connected): CG9663, opa\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG17666, CG9663, opa\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG9663\n  CG10032--opa\n  CG17666--CG9663\n  CG17666--opa\n  CG9663--opa\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11300, CG12491, CG14074, CG31029, ball, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG11300--CG12491\n  CG11300--CG14074\n  CG11300--CG31029\n  CG11300--ball\n  CG11300--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  lwr--lwr\n  lwr--lwr\n\nNETWORK SUMMARY: 6 proteins, 9 interactions\n\nNew protein to integrate: CG2852\n\nPredict the interactions for CG2852:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11300--CG2852"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5\n\nTWO-HYBRID INTERACTIONS:\n  CG10466--CG5280\n  CG12496--CG5280\n  CG12496--CG7352\n  CG13032--CG5280\n  CG15646--CG5280\n  CG18619--CG5280\n  CG5062--CG5280\n  CG5280--CG7352\n  CG5280--CG8301\n  CG5280--Evi5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP\n- Network density: approximately 1.29\n- Hub proteins (highly connected): CkIIbeta, CkIIalpha\n- Total interactions: approximately 36"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP\n\nTWO-HYBRID INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIbeta--CkIIbeta\n  Mfap1--Prp38\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Mfap1\n  Cdc5--Prp38\n  CkIIalpha--CkIIbeta\n  CkIIalpha--Mfap1\n  CkIIalpha--Prp38\n  CkIIbeta--Mfap1\n  CkIIbeta--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp8\n  Mfap1--alphaCOP\n  Mfap1--betaCOP\n  Prp38--Prp8\n  Prp38--alphaCOP\n  Prp38--betaCOP\n  alphaCOP--betaCOP\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CkIIalpha--CkIIbeta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  Mfap1--Prp38\n  Mfap1--Prp38\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CkIIalpha--CkIIalpha\n\nNETWORK SUMMARY: 8 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib\n\nTWO-HYBRID INTERACTIONS:\n  CG10176--CG5676\n  CG10176--Cpr50Cb\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--CG8184\n  CG10176--Syx7\n  CG10176--crb\n  CG10176--egr\n  CG10176--hep\n  CG10176--scrib\n  CG8184--Traf6\n  CG8184--egr\n  Syx7--hep\n  Traf6--egr\n  Traf6--egr\n  Traf6--egr\n  crb--scrib\n  crb--scrib\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--scrib\n  egr--scrib\n  egr--scrib\n  hep--scrib\n  hep--scrib\n  hep--scrib\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  crb--scrib\n  egr--scrib\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10176--Traf6\n  CG10176--egr\n  CG10176--egr\n  Traf6--Traf6\n  scrib--scrib\n\nNETWORK SUMMARY: 10 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG10710--CG42369\n  CG10710--CG4328\n  CG10710--CtBP\n  CG10710--Hakai\n  CG11796--CG11796\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG10710\n  CG10710--CG11796\n  CG10710--CG42369\n  CG10710--CG4328\n  CG10710--CtBP\n  CG10710--Hakai\n  CG10710--Pih1D1\n  CG11796--CG11796\n  CtBP--CtBP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10754, CG11985, CG16941, Ndc80, Nuf2, Prp31, dar1, noi, snf\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG16941--noi\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10754--CG11985\n  CG10754--CG16941\n  CG10754--noi\n  CG10754--snf\n  CG11985--CG16941\n  CG11985--noi\n  CG11985--snf\n  CG11985--snf\n  CG16941--noi\n  CG16941--snf\n  Ndc80--Nuf2\n  Ndc80--Nuf2\n  noi--snf\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  snf--snf\n\nCO-FRACTIONATION INTERACTIONS:\n  snf--snf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10754--Ndc80\n  CG10754--Ndc80\n  CG10754--Nuf2\n  CG10754--Prp31\n  CG10754--Prp31\n  Ndc80--Prp31\n  Ndc80--Prp31\n  Nuf2--Prp31\n\nNETWORK SUMMARY: 9 proteins, 26 interactions\n\nNew protein to integrate: CG5514\n\nPredict the interactions for CG5514:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10754--CG5514"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11269, CG13272, Cp38, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG13272--Cp38\n  CG13272--spi\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG13272, Cp38, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG13272\n  CG13272--Cp38\n  CG13272--spi\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima\n- Network density: approximately 0.52\n- Hub proteins (highly connected): TfIIFalpha, TfIIFbeta\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, gig, sima\n\nTWO-HYBRID INTERACTIONS:\n  NHP2--TfIIFalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--TfIIFalpha\n  CG8117--TfIIFbeta\n  S6kII--TfIIFalpha\n  S6kII--TfIIFbeta\n  S6kII--gig\n  TfIIFalpha--TfIIFbeta\n  TfIIFalpha--gig\n  TfIIFalpha--sima\n  TfIIFbeta--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TfIIFalpha--TfIIFbeta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C15, CG11322, CG9911, Nc73EF, Tom20\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Nc73EF--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 5 proteins, 2 interactions\n\nNew protein to integrate: CG10075\n\nPredict the interactions for CG10075:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  C15--CG10075\n  CG10075--CG11322\n  CG10075--CG9911\n  CG10075--Nc73EF\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10075--Tom20"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--Nha1\n  CG5478--Nha1\n  CG6443--Nha1\n  Nha2--Nha2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nha1--Nha2\n  Nha1--Nha2\n\nNETWORK SUMMARY: 8 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--Nha1\n  CG14957--Nha1\n  CG3309--Nha1\n  CG5478--Nha1\n  CG6443--Nha1\n  Nha1--cactin\n  Nha2--Nha2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nha1--Nha2\n  Nha1--Nha2\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n\nTWO-HYBRID INTERACTIONS:\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--APP\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APP--TRUB1\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--SLC2A2\n  APP--APP\n  CAPG--TRUB1\n  DVL2--DVL2\n  NUDT9--SLC2A2\n  NUDT9--TRUB1\n  SLC2A2--ST3GAL2\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n\nTWO-HYBRID INTERACTIONS:\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--APP\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--KPNA2\n  APP--NUDT9\n  APP--SLC2A2\n  APP--TRUB1\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--SLC2A2\n  APP--APP\n  CAPG--SLC2A2\n  CAPG--TRUB1\n  DVL2--DVL2\n  DVL2--SLC2A2\n  NPLOC4--SLC2A2\n  NUDT9--SLC2A2\n  NUDT9--TRUB1\n  SLC2A2--ST3GAL2\n  SLC2A2--TRUB1\n  SLC2A2--TRUB1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  APOB--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG32447, Rcd5, kermit, sinu\n\nTWO-HYBRID INTERACTIONS:\n  CG32447--Rcd5\n  CG32447--sinu\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32447, Rcd5, kermit, sinu\n\nTWO-HYBRID INTERACTIONS:\n  CG32447--Rcd5\n  CG32447--kermit\n  CG32447--sinu\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10710, CG11796, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG11796--CG11796\n  CG11796--Cyp9f2\n  CG11796--aPKC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11796--Trp1\n  CG11796--beta4GalNAcTB\n\nNETWORK SUMMARY: 6 proteins, 6 interactions\n\nNew protein to integrate: CG14105\n\nPredict the interactions for CG14105:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11796--CG14105"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12860, NimC1, park, sick"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12860, NimC1, park, sick\n\nTWO-HYBRID INTERACTIONS:\n  CG12860--NimC1\n  CG12860--park\n  CG12860--sick\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  park--park\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  park--park\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A\n\nTWO-HYBRID INTERACTIONS:\n  CDK2--S\n  IFITM2--KRTAP1-1\n  IFITM2--S\n  IFITM2--SLC10A1\n  IFITM2--UPF3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAND1--CAND1\n  CDK2--CDK2\n  DDX58--DDX58\n  DDX58--DDX58\n  IFITM2--S\n  ORF3a--ORF3a\n  ORF3a--S\n  ORF3a--S\n  S--S\n  S--S\n  S--S\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CDK2--CDK2\n  CDK2--CDK2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CAND1--CDK2\n  CAND1--IFITM2\n  CAND1--S\n  CDK2--CDK2\n  CDK2--CDK2\n  CDK2--IFITM2\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--SREBF1\n\nFRET INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--S\n  S--S\n  SREBF1--SREBF1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  S--S\n  S--S\n  S--S\n\nCO-PURIFICATION INTERACTIONS:\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IFITM2--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--SREBF1\n  S--S\n  S--S\n  S--SREBF1\n\nNEGATIVE GENETIC INTERACTIONS:\n  IFITM2--SREBF1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--IFITM2\n\nCO-LOCALIZATION INTERACTIONS:\n  IFITM2--S\n\nPCA INTERACTIONS:\n  ORF3a--ORF3a\n  S--S\n  S--S\n\nNETWORK SUMMARY: 10 proteins, 405 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG1598--CG3838\n  CG1598--CG42820\n  CG1598--CG6357\n  CG1598--Shroom\n  CG1598--pip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Shroom--Shroom\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Shroom--Shroom\n\nCO-FRACTIONATION INTERACTIONS:\n  Shroom--Shroom\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  Blm--mtDNA-helicase\n  CG10721--mtDNA-helicase\n  Mlh1--mtDNA-helicase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3262--Iap2\n  CG3262--mtDNA-helicase\n  Coprox--Iap2\n  Coprox--mtDNA-helicase\n  EndoG--Iap2\n  EndoG--Su(P)\n  EndoG--mtDNA-helicase\n  Iap2--Iap2\n  Iap2--Mpcp\n  Iap2--Su(P)\n  Iap2--mtDNA-helicase\n  Mpcp--mtDNA-helicase\n  Su(P)--mtDNA-helicase\n\nCO-FRACTIONATION INTERACTIONS:\n  EndoG--EndoG\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--Obp56a\n  CG13494--Obp56a\n  CG14684--Obp56a\n  Lcp65Ae--Obp56a\n  Obp56a--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1142, CG3303, Ent1, Tsp74F, Tsp96F\n\nTWO-HYBRID INTERACTIONS:\n  CG3303--Ent1\n  CG3303--Tsp74F\n  CG3303--Tsp96F\n  Tsp74F--Tsp96F\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG3303, Ent1, Tsp74F, Tsp96F\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG3303\n  CG3303--Ent1\n  CG3303--Tsp74F\n  CG3303--Tsp96F\n  Ent1--Tsp74F\n  Tsp74F--Tsp96F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1\n\nTWO-HYBRID INTERACTIONS:\n  CG5033--CG5642\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--CG6712\n  CG5033--CG6724\n  CG5033--FK506-bp1\n  CG6712--CG8939\n  CG6712--Non1\n  CG6712--Rbm13\n  CG6724--FK506-bp1\n  CG6724--Rbm13\n  CG8939--FK506-bp1\n  CG8939--Non1\n  CG8939--RpL7-like\n  CG8939--Tsc1\n  FK506-bp1--Non1\n  Non1--RpL7-like\n  Rbm13--RpL7-like\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1\n\nTWO-HYBRID INTERACTIONS:\n  CG5033--CG5642\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--CG6712\n  CG5033--CG6724\n  CG5033--CG8939\n  CG5033--FK506-bp1\n  CG5033--Non1\n  CG5033--Rbm13\n  CG5033--RpL7-like\n  CG5033--Tsc1\n  CG6712--CG8939\n  CG6712--Non1\n  CG6712--Rbm13\n  CG6712--RpL7-like\n  CG6724--FK506-bp1\n  CG6724--Rbm13\n  CG8939--FK506-bp1\n  CG8939--Non1\n  CG8939--Rbm13\n  CG8939--RpL7-like\n  CG8939--Tsc1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--Non1\n  Non1--Rbm13\n  Non1--RpL7-like\n  Rbm13--RpL7-like\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13957, Dref, Leash, l(2)37Cg, wash\n\nTWO-HYBRID INTERACTIONS:\n  CG13957--l(2)37Cg\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Dref\n  CG13957--Leash\n  CG13957--wash\n  Dref--Dref\n  Leash--wash\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  wash--wash\n  wash--wash\n\nNETWORK SUMMARY: 5 proteins, 11 interactions\n\nNew protein to integrate: Trf2\n\nPredict the interactions for Trf2:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dref--Trf2\n  Dref--Trf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Trf2\n  Dref--Trf2\n  Trf2--wash\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dref--Trf2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13074, Cdlc2, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n\nTWO-HYBRID INTERACTIONS:\n  CG13074--Cdlc2\n  CG13074--Pvf1\n  CG13074--RpL15\n  CG13074--RpL19\n  CG13074--RpL41\n  CG13074--ctp\n  CG13074--robl\n  CG13074--robl\n  RpL19--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL15--RpL19\n  RpL15--RpL41\n  RpL19--RpL41\n  ctp--ctp\n  ctp--robl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 8 proteins, 15 interactions\n\nNew protein to integrate: Gapdh1\n\nPredict the interactions for Gapdh1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13074--Gapdh1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi\n- Network density: approximately 0.51\n- Hub proteins (highly connected): Hnf4, Rel\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Hnf4\n  CG11164--Ubx\n  Gadd45--Hnf4\n  Hnf4--Hr78\n  Hnf4--Rel\n  Hnf4--sima\n  Hnf4--spi\n  Hr78--Rel\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hnf4--mdy\n  Hnf4--mdy\n  Ubx--abd-A\n  Ubx--abd-A\n  abd-A--spi\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nPCA INTERACTIONS:\n  Hnf4--Ubx\n  Hnf4--abd-A\n  Hr78--Ubx\n  Hr78--Ubx\n  Hr78--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10681\n  CG10635--CG10914\n  CG10635--SIP3\n  CG7048--CG7770\n  CG7048--l(3)01239\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10635--CG7048\n  CG10635--CG7770\n  CG10635--l(3)01239\n  CG10635--mst\n  CG13993--CG7048\n  CG13993--l(3)01239\n  CG13993--mgr\n  CG13993--mst\n  CG7048--mgr\n  CG7048--mst\n  CG7770--l(3)01239\n  CG7770--mgr\n  CG7770--mst\n  l(3)01239--mgr\n  mgr--mst\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  l(3)01239--mgr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10681\n  CG10635--CG10914\n  CG10635--SIP3\n  CG10681--CG10681\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  CG7048--mgr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10635--CG13993\n  CG10635--CG7048\n  CG10635--CG7770\n  CG10635--l(3)01239\n  CG10635--mgr\n  CG10635--mst\n  CG13993--CG7048\n  CG13993--CG7770\n  CG13993--l(3)01239\n  CG13993--mgr\n  CG13993--mst\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--mgr\n  CG7048--mst\n  CG7770--l(3)01239\n  CG7770--mgr\n  CG7770--mst\n  l(3)01239--mgr\n  l(3)01239--mst\n  mgr--mst\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  l(3)01239--mgr\n  l(3)01239--mgr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  l(3)01239--mgr\n  l(3)01239--mgr\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A\n- Network density: approximately 9.00\n- Hub proteins (highly connected): S, ORF3a\n- Total interactions: approximately 405"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A\n\nTWO-HYBRID INTERACTIONS:\n  CDK2--S\n  IFITM2--KRTAP1-1\n  IFITM2--S\n  IFITM2--SLC10A1\n  IFITM2--UPF3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAND1--CAND1\n  CDK2--CDK2\n  DDX58--DDX58\n  DDX58--DDX58\n  IFITM2--S\n  ORF3a--ORF3a\n  ORF3a--S\n  ORF3a--S\n  S--S\n  S--S\n  S--S\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CDK2--CDK2\n  CDK2--CDK2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CAND1--CDK2\n  CAND1--IFITM2\n  CAND1--S\n  CDK2--CDK2\n  CDK2--CDK2\n  CDK2--IFITM2\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--SREBF1\n\nFRET INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--S\n  S--S\n  SREBF1--SREBF1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  S--S\n  S--S\n  S--S\n\nCO-PURIFICATION INTERACTIONS:\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IFITM2--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--SREBF1\n  S--S\n  S--S\n  S--SREBF1\n\nNEGATIVE GENETIC INTERACTIONS:\n  IFITM2--SREBF1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--IFITM2\n\nCO-LOCALIZATION INTERACTIONS:\n  IFITM2--S\n\nPCA INTERACTIONS:\n  ORF3a--ORF3a\n  S--S\n  S--S\n\nNETWORK SUMMARY: 10 proteins, 405 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Octbeta1R, Octbeta2R, dm, rad"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Octbeta1R, Octbeta2R, dm, rad\n\nTWO-HYBRID INTERACTIONS:\n  Octbeta2R--dm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Octbeta1R--Octbeta2R\n  Octbeta1R--Octbeta2R\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Octbeta2R--rad\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, phl\n\nTWO-HYBRID INTERACTIONS:\n  CG9775--Ref1\n  CG9775--Zn72D\n  FK506-bp1--FK506-bp1\n  Ref1--Ref1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6701--CG9775\n  CG6701--Syp\n  CG9775--FK506-bp1\n  CG9775--Syp\n  CG9775--phl\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 7 proteins, 14 interactions\n\nNew protein to integrate: eIF4E-7\n\nPredict the interactions for eIF4E-7:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9775--eIF4E-7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG9578\n  CG10570--CG9578\n  CG17162--CG9578\n  CG17162--Pp2B-14D\n  CG17325--CG9578\n  CG9578--CG9578\n  CG9578--Pp2B-14D\n  CG9578--Pph13\n  CG9578--Strn-Mlck\n\nNETWORK SUMMARY: 8 proteins, 11 interactions\n\nNew protein to integrate: mts\n\nPredict the interactions for mts:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9578--mts"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12470, Cka, Mob4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n  Cka--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cka--Mob4\n  Cka--Mob4\n\nTWO-HYBRID INTERACTIONS:\n  Cka--Mob4\n\nNETWORK SUMMARY: 3 proteins, 7 interactions\n\nNew protein to integrate: CG10483\n\nPredict the interactions for CG10483:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10483--CG12470\n  CG10483--Cka\n  CG10483--Mob4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11672, CG13142, CG13171, MAGE, Pk17E\n- Network density: approximately 0.80\n- Hub proteins (highly connected): CG13142, MAGE\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11672, CG13142, CG13171, MAGE, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG11672--CG13142\n  CG13142--CG13171\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--Pk17E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu\n\nTWO-HYBRID INTERACTIONS:\n  C1GalTA--MAGE\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG15136--MAGE\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  MAGE--mei-41\n  MAGE--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  MAGE--spn-A\n  mei-41--tefu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 8 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11790, CG3397, CG6733, CoIV, ng2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG3397, CG6733, CoIV, ng2\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG3397\n  CG11790--CG6733\n  CG11790--CoIV\n  CG11790--ng2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5734--Prat2\n  Pak--Prat2\n  Prat2--RhoGAP68F\n  Prat2--ald\n  Prat2--nej\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  nej--nej\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ald--ald\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG31961--Prat2\n  CG3332--Prat2\n  CG5734--Prat2\n  Pak--Prat2\n  Prat2--RhoGAP68F\n  Prat2--ald\n  Prat2--nej\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prat--Prat2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  ald--ald\n  nej--nej\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ald--ald\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4\n\nTWO-HYBRID INTERACTIONS:\n  A16--Zasp67\n  PHDP--Zasp67\n  RASSF8--RASSF8\n  RASSF8--Zasp66\n  RASSF8--Zasp67\n  RpS3--Zasp67\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp66--Zasp67\n  Zasp66--Zasp67\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Zasp52--Zasp66\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Zasp52--Zasp52\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Zasp52--Zasp52\n\nPCA INTERACTIONS:\n  Zasp52--Zasp66\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4\n\nTWO-HYBRID INTERACTIONS:\n  A16--Zasp67\n  Indy--Zasp67\n  PHDP--Zasp67\n  RASSF8--RASSF8\n  RASSF8--Zasp66\n  RASSF8--Zasp67\n  RpS3--Zasp52\n  RpS3--Zasp67\n  Sirup--Zasp67\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp52--Zasp67\n  Zasp67--dgt4\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp66--Zasp67\n  Zasp66--Zasp67\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Zasp52--Zasp66\n\nPCA INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Zasp52--Zasp52\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cyp28d1, EDTP, RpL17, RpS23, RpS9\n\nTWO-HYBRID INTERACTIONS:\n  EDTP--RpL17\n  EDTP--RpS23\n  EDTP--RpS9\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL17--RpS23\n  RpS23--RpS9\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp28d1, EDTP, RpL17, RpS23, RpS9\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n  EDTP--RpL17\n  EDTP--RpS23\n  EDTP--RpS9\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL17--RpS23\n  RpL17--RpS9\n  RpS23--RpS9\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13001, CG30089, Top2, mus101\n- Network density: approximately 1.17\n- Hub proteins (highly connected): Top2, mus101\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13001, CG30089, Top2, mus101\n\nTWO-HYBRID INTERACTIONS:\n  CG13001--mus101\n  CG30089--mus101\n\nCO-FRACTIONATION INTERACTIONS:\n  Top2--Top2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Top2--Top2\n  Top2--mus101\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Top2--mus101\n  Top2--mus101\n\nNETWORK SUMMARY: 4 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so\n\nTWO-HYBRID INTERACTIONS:\n  CG2144--Gadd45\n  Gadd45--Hnf4\n  Gadd45--PCNA\n  Gadd45--Rcd-1r\n  Gadd45--so\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--hep\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  PCNA--PCNA\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, hep, so\n\nTWO-HYBRID INTERACTIONS:\n  CG2144--Gadd45\n  CG7911--Gadd45\n  Gadd45--Hnf4\n  Gadd45--PCNA\n  Gadd45--Rcd-1r\n  Gadd45--so\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7911--PCNA\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--Smg5\n  Gadd45--hep\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8407, Cpr73D, ko\n\nTWO-HYBRID INTERACTIONS:\n  CG8407--Cpr73D\n  CG8407--ko\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG7879\n\nPredict the interactions for CG7879:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7879--CG8407"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, sns\n\nTWO-HYBRID INTERACTIONS:\n  CG12020--Mdr65\n  CG12470--Mdr65\n  CG12470--Neto\n  CG4328--Mdr65\n  Mdr65--Neto\n  Mdr65--RpS11\n  Mdr65--Ubqn\n  Mdr65--sns\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--eas\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sns--sns\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: para\n\nPredict the interactions for para:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--para\n  eas--para"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000\n\nTWO-HYBRID INTERACTIONS:\n  CG9170--mGluR\n  Psn--Psn\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CaMKII--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Psn--mGluR\n  gb--mGluR\n  mGluR--mir-1000\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CaMKII--Fmr1\n  Fmr1--Fmr1\n  Fmr1--Fmr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fmr1--Fmr1\n  homer--mGluR\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n\nCO-FRACTIONATION INTERACTIONS:\n  CaMKII--CaMKII\n\nPCA INTERACTIONS:\n  Psn--Psn\n  Psn--Psn\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Psn--Psn\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  AGO2--PIG-S\n  BM-40-SPARC--PIG-S\n  BM-40-SPARC--Vsx2\n  CG44009--PIG-S\n  CG4848--PIG-S\n  Hsc70-4--PIG-S\n  PIG-S--Prosbeta2\n  PIG-S--Vsx2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  CG11190--PIG-S\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  AGO2--PIG-S\n  BM-40-SPARC--PIG-S\n  BM-40-SPARC--Vsx2\n  CG44009--PIG-S\n  CG4848--PIG-S\n  Hsc70-4--PIG-S\n  PIG-S--Pdh\n  PIG-S--Prosbeta2\n  PIG-S--Vsx2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n  CG11190--PIG-S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Pdh--Pdh\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO1, CG13005, CG15631, CG9062, Cpr50Ca, Tsp, krz\n\nNETWORK SUMMARY: 7 proteins, 0 interactions\n\nNew protein to integrate: CG14931\n\nPredict the interactions for CG14931:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  AGO1--CG14931\n  CG13005--CG14931\n  CG14931--CG15631\n  CG14931--Cpr50Ca\n  CG14931--Tsp\n  CG14931--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14931--CG9062"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8909, Gtp-bp, obst-E, opa, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG8909--obst-E\n  Gtp-bp--obst-E\n  obst-E--opa\n  obst-E--sol\n  opa--sol\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: CG31111\n\nPredict the interactions for CG31111:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG31111--obst-E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10032, CG17666, CG9663, opa\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG9663\n  CG10032--opa\n  CG17666--CG9663\n  CG9663--opa\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG17666, CG9663, opa\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG9663\n  CG10032--opa\n  CG17666--CG9663\n  CG17666--opa\n  CG9663--opa\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATPsyn-beta, CG10914, CG11964, CG8206, FER, GstE1, cnc, kermit, sba\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--GstE1\n  CG10914--GstE1\n  CG11964--GstE1\n  CG8206--GstE1\n  FER--GstE1\n  GstE1--cnc\n  GstE1--kermit\n  GstE1--sba\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  FER--FER\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FER--FER\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--sba\n\nNETWORK SUMMARY: 9 proteins, 12 interactions\n\nNew protein to integrate: CG15602\n\nPredict the interactions for CG15602:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15602--GstE1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n\nTWO-HYBRID INTERACTIONS:\n  CG3085--CG33095\n  CG33095--CG6523\n  CG33095--Dlc90F\n  CG33095--Lmpt\n  CG33095--Rcd-1r\n  CG33095--Vps28\n  CG33095--kermit\n  CG33095--nuf\n  CG6523--Lmpt\n  Dlc90F--Dlc90F\n  nuf--nuf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33095--fra\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n\nTWO-HYBRID INTERACTIONS:\n  CG42676--slif\n  Src64B--Src64B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Pten--slif\n  hppy--slif\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pten--hppy\n  Pten--slif\n  hppy--slif\n\nFRET INTERACTIONS:\n  sav--sav\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n\nTWO-HYBRID INTERACTIONS:\n  CG42676--slif\n  CG5375--slif\n  Src64B--Src64B\n  Src64B--slif\n  sav--slif\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Pten--slif\n  hppy--slif\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gcn2--slif\n  Pten--hppy\n  Pten--slif\n  hppy--slif\n\nFRET INTERACTIONS:\n  sav--sav\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Pten--Pten\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, UPF3A\n\nTWO-HYBRID INTERACTIONS:\n  CDK2--S\n  IFITM2--KRTAP1-1\n  IFITM2--S\n  IFITM2--SLC10A1\n  IFITM2--UPF3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAND1--CAND1\n  CDK2--CDK2\n  DDX58--DDX58\n  DDX58--DDX58\n  IFITM2--S\n  ORF3a--ORF3a\n  ORF3a--S\n  ORF3a--S\n  S--S\n  S--S\n  S--S\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CDK2--CDK2\n  CDK2--CDK2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CAND1--CDK2\n  CAND1--IFITM2\n  CAND1--S\n  CDK2--CDK2\n  CDK2--CDK2\n  CDK2--IFITM2\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nFRET INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--S\n  S--S\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  S--S\n  S--S\n  S--S\n\nCO-PURIFICATION INTERACTIONS:\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--IFITM2\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IFITM2--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n\nCO-LOCALIZATION INTERACTIONS:\n  IFITM2--S\n\nPCA INTERACTIONS:\n  ORF3a--ORF3a\n  S--S\n  S--S\n\nNETWORK SUMMARY: 9 proteins, 400 interactions\n\nNew protein to integrate: SREBF1\n\nPredict the interactions for SREBF1:"
-      },
-      {
-        "role": "assistant",
-        "content": "FRET INTERACTIONS:\n  SREBF1--SREBF1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ORF3a--SREBF1\n  S--SREBF1\n\nNEGATIVE GENETIC INTERACTIONS:\n  IFITM2--SREBF1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  S--SREBF1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11523, Marf, NC2alpha, RpS18\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: CG6428\n\nPredict the interactions for CG6428:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11523--CG6428\n  CG6428--Marf\n  CG6428--NC2alpha\n  CG6428--RpS18"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG7182\n  CG7182--CG7191\n  CG7182--Pak\n  CG7182--Tep4\n  CG7182--Uba2\n  CG7182--mad2\n  CG7182--tomb\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7182--rti\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2\n\nTWO-HYBRID INTERACTIONS:\n  CDHR2--MAST2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDHR2--MAST2\n\nCO-LOCALIZATION INTERACTIONS:\n  CDHR2--MAST2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RPS6KA2--RPS6KA2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--FBXO2\n  CDHR2--HIP1R\n  CDHR2--LAMB1\n  CDHR2--NF1\n  CDHR2--RPS6KA2\n  CDHR2--SURF1\n  CDHR2--TBCD\n  CDHR2--TMTC2\n  FBXO2--LAMB1\n  RPS6KA2--RPS6KA2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG13427\n  CG10559--CG1690\n  CG10559--CG18624\n  CG10559--Ef1alpha48D\n  CG10559--Indy\n  CG10559--LpR1\n  CG10559--NimC1\n  CG10559--cold\n  CG10559--gb\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG2767\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Ssdp\n  CG2767--CG6084\n  CG2767--Fkbp14\n  CG2767--Moe\n  CG2767--RhoGDI\n  CG5355--Fkbp14\n  CG6084--Moe\n  Fkbp14--Moe\n  Fkbp14--RhoGDI\n  Moe--RhoGDI\n  Moe--yip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Ssdp\n  CG2767--Ssdp\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG2767\n  Moe--Moe\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Ssdp\n  CG2767--CG5355\n  CG2767--CG6084\n  CG2767--Fkbp14\n  CG2767--Moe\n  CG2767--RhoGDI\n  CG2767--yip2\n  CG5355--Fkbp14\n  CG6084--Fkbp14\n  CG6084--Moe\n  CG6084--RhoGDI\n  Fkbp14--Moe\n  Fkbp14--RhoGDI\n  Fkbp14--yip2\n  Moe--RhoGDI\n  Moe--yip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--CG2767\n  Bx--Ssdp\n  CG2767--Ssdp\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CLDN19, PKD2L1, TNNI1, TNNI3\n- Network density: approximately 0.83\n- Hub proteins (highly connected): PKD2L1, TNNI3\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CLDN19, PKD2L1, TNNI1, TNNI3\n\nTWO-HYBRID INTERACTIONS:\n  CLDN19--PKD2L1\n  PKD2L1--TNNI3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PKD2L1--TNNI3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI1\n  PKD2L1--TNNI3\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG11438, CG43129\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG11438\n  CG11438--CG13920\n  CG11438--CG33333\n  CG11438--CG43129\n  CG11438--CG5104\n  CG11438--CG8668\n  CG11438--Cys\n  CG11438--Rh50\n  CG11438--ng2\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dref--Trf2\n  Dref--Trf2\n  wash--wash\n  wash--wash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Leash\n  CG13957--Trf2\n  Dref--Dref\n  Dref--Trf2\n  Leash--wash\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dref--Trf2\n\nTWO-HYBRID INTERACTIONS:\n  Leash--Leash\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash\n\nTWO-HYBRID INTERACTIONS:\n  CG13957--l(2)37Cg\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dref--Trf2\n  Dref--Trf2\n  wash--wash\n  wash--wash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Dref\n  CG13957--Leash\n  CG13957--Trf2\n  CG13957--wash\n  Dref--Dref\n  Dref--Trf2\n  Leash--wash\n  Trf2--wash\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dref--Trf2\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG10075\n  CG10075--CG11322\n  CG10075--CG9911\n  CG10075--Nc73EF\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10075--Tom20\n  Nc73EF--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n- Network density: approximately 0.64\n- Hub proteins (highly connected): KLHL18, l(2)37Cb\n- Total interactions: approximately 29"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--l(2)37Cb\n  awd--awd\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG2993--l(2)37Cb\n  CG31712--CG3542\n  CG31712--GstO3\n  CG31712--l(2)37Cb\n  CG31712--regucalcin\n  CG3542--l(2)37Cb\n  GstO3--Sh3beta\n  GstO3--awd\n  GstO3--l(2)37Cb\n  GstO3--regucalcin\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n  Sh3beta--awd\n  Sh3beta--l(2)37Cb\n  Sh3beta--regucalcin\n  awd--l(2)37Cb\n  awd--regucalcin\n  l(2)37Cb--regucalcin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--l(2)37Cb\n\nCO-FRACTIONATION INTERACTIONS:\n  awd--awd\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  awd--awd\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10527--CG13321\n  CG10527--CG13928\n  CG13321--CG13928\n  CG13928--CG2199\n  CG13928--Dok\n  CG13928--Obp56d\n  CG13928--imd\n  CG13928--osa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13928--orb2\n  CG13928--orb2\n  CG13928--smg\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--smg\n  orb2--smg\n  osa--osa\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13928--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  imd--imd\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nCO-FRACTIONATION INTERACTIONS:\n  imd--imd\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  imd--imd\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG11454, Ibf2\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10732--CG11454\n  CG11454--CG12470\n  CG11454--CG13083\n  CG11454--CG15771\n  CG11454--CG17599\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Dyb\n  CG11454--Ibf2\n  CG11454--Su(var)3-7\n  CG13083--CG17599\n  CG17599--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG32447, Rcd5, kermit, sinu"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32447, Rcd5, kermit, sinu\n\nTWO-HYBRID INTERACTIONS:\n  CG32447--Rcd5\n  CG32447--kermit\n  CG32447--sinu\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG13689, 4E-T\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n\nTWO-HYBRID INTERACTIONS:\n  4E-T--4E-T\n  4E-T--CG13689\n  Akh--CG13689\n  CG13689--CG13733\n  CG13689--CG34117\n  CG13689--CG6769\n  CG13689--Dl\n  CG13689--LKR\n  CG13689--Moca-cyp\n  CG13689--ste14\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dl--Dl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG11382--CG3225\n  CG11382--CG43129\n  CG11382--CG7264\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG11382\n  CG11382--CG1598\n  CG11382--CG3225\n  CG11382--CG43129\n  CG11382--CG7264\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace\n\nTWO-HYBRID INTERACTIONS:\n  CG45057--Vha13\n  CTPsyn--CTPsyn\n  Trs33--Vha13\n  Vha13--Vha26\n  Vha13--Vha26\n  Vha13--fu\n  Vha13--fu\n  Vha13--lace\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mitf--Vha13\n  Mitf--Vha26\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--Vha13\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra\n- Network density: approximately 0.29\n- Hub proteins (highly connected): alphaKap4, Mob2\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG3876--alphaKap4\n  CG7208--alphaKap4\n  Mob2--alphaKap4\n  SmE--alphaKap4\n  alphaKap4--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaKap4--scra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A\n- Network density: approximately 1.69\n- Hub proteins (highly connected): TP53, LMNA\n- Total interactions: approximately 61"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ANK1, CREB3L3, ERGIC3, FAM209A, LMNA, RHAG, TEX29, TP53, UNC93A\n\nTWO-HYBRID INTERACTIONS:\n  ANK1--RHAG\n  CREB3L3--RHAG\n  ERGIC3--RHAG\n  FAM209A--RHAG\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--RHAG\n  RHAG--TEX29\n  RHAG--UNC93A\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ANK1--RHAG\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERGIC3--ERGIC3\n  LMNA--LMNA\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nFRET INTERACTIONS:\n  CREB3L3--CREB3L3\n  TP53--TP53\n  TP53--TP53\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--TP53\n  LMNA--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nCO-LOCALIZATION INTERACTIONS:\n  LMNA--TP53\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  RHAG--TP53\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n\nNETWORK SUMMARY: 9 proteins, 61 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10834, CG10927, CG11249, robl62A\n- Network density: approximately 0.50\n- Hub proteins (highly connected): robl62A, CG10834\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10834, CG10927, CG11249, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10834--robl62A\n  CG10927--robl62A\n  CG11249--robl62A\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio\n- Network density: approximately 0.87\n- Hub proteins (highly connected): Liprin-beta, Liprin-alpha\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n  CG9754--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-alpha--Liprin-gamma\n  Liprin-alpha--trio\n  Liprin-beta--Liprin-gamma\n  Liprin-beta--trio\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-beta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-alpha--Liprin-alpha\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-gamma\n  Liprin-beta--Liprin-beta\n  Liprin-gamma--Liprin-gamma\n\nNETWORK SUMMARY: 6 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10211, CG11786, Vsx2, bcd, ci\n\nTWO-HYBRID INTERACTIONS:\n  CG10211--CG11786\n  CG10211--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10211, CG11786, Vsx2, bcd, ci\n\nTWO-HYBRID INTERACTIONS:\n  CG10211--CG11786\n  CG10211--Vsx2\n  CG10211--bcd\n  CG10211--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG12723\n  CG11570--CG9522\n  CG11570--Cpr72Ea\n  CG11570--brk\n  CG11570--loco\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG17244, Liprin-beta\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--CG9293\n  CG17244--Liprin-beta\n  CG17244--Mes4\n  CG17244--NC2alpha\n  CG17244--Taf11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta\n  Taf11--Taf11\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  phl--tum\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--phl\n  Gl--nesd\n  nesd--pav\n  pav--tum\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  14-3-3zeta--14-3-3zeta\n  nesd--pav\n  nesd--phl\n  nesd--tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--Dsor1\n  14-3-3epsilon--nesd\n  14-3-3epsilon--phl\n  14-3-3zeta--Dsor1\n  14-3-3zeta--phl\n  Dsor1--nesd\n  Dsor1--phl\n  nesd--pav\n  nesd--pav\n  nesd--tum\n  pav--tum\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n\nTWO-HYBRID INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  pav--tum\n  pav--tum\n  pav--tum\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n  pav--tum\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--tum\n\nNETWORK SUMMARY: 9 proteins, 31 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum\n\nTWO-HYBRID INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Mlp84B--nesd\n  pav--tum\n  pav--tum\n  pav--tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--Dsor1\n  14-3-3epsilon--nesd\n  14-3-3epsilon--phl\n  14-3-3zeta--Dsor1\n  14-3-3zeta--nesd\n  14-3-3zeta--phl\n  Dsor1--nesd\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  nesd--pav\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  phl--tum\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--phl\n  Gl--nesd\n  nesd--pav\n  pav--tum\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  nesd--pav\n  nesd--phl\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n  pav--tum\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n  pav--tum\n\nNETWORK SUMMARY: 9 proteins, 53 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6569, mmy, slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--mmy\n\nNETWORK SUMMARY: 3 proteins, 1 interactions\n\nNew protein to integrate: MFS16\n\nPredict the interactions for MFS16:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  MFS16--slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--MFS16\n  MFS16--mmy"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10959, CG13151, CG15916, CG2129, CG2199\n\nTWO-HYBRID INTERACTIONS:\n  CG13151--CG15916\n  CG13151--CG2129\n  CG13151--CG2199\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13151--CG2129\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG13151, CG15916, CG2129, CG2199\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG13151\n  CG13151--CG15916\n  CG13151--CG2129\n  CG13151--CG2199\n  CG2129--CG2129\n  CG2129--CG2129\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13151--CG2129\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG5149\n  CG11474--CG5149\n  CG15365--CG5149\n  CG15631--CG5149\n  CG5149--CG6287\n  CG5149--CG8449\n  CG5149--CG8635\n  CG5149--His2A:CG31618\n  CG5149--eIF-5A\n\nPCA INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10462, CG2116, CG3847, CG7911, Mdr49, Usf\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--CG2116\n  CG10462--CG3847\n  CG10462--CG7911\n  CG10462--Mdr49\n  CG10462--Usf\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: CG10694\n\nPredict the interactions for CG10694:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10462--CG10694"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10214, CG5484, CG7222, TwdlL\n\nTWO-HYBRID INTERACTIONS:\n  CG5484--CG7222\n  CG7222--TwdlL\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG5484, CG7222, TwdlL\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  CG5484--CG7222\n  CG7222--TwdlL\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2\n\nTWO-HYBRID INTERACTIONS:\n  PDZK1--SLC22A12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATP5B--SLC22A12\n  NDUFA13--SLC22A12\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2\n\nTWO-HYBRID INTERACTIONS:\n  PDZK1--SLC22A12\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PDZK1--SLC22A12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATP5B--SLC22A12\n  NDUFA13--SLC22A12\n  SLC22A12--SMAP2\n  SLC22A12--SMAP2\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace\n- Network density: approximately 0.57\n- Hub proteins (highly connected): Vha13, fu\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace\n\nTWO-HYBRID INTERACTIONS:\n  CG45057--Vha13\n  CTPsyn--CTPsyn\n  Trs33--Vha13\n  Vha13--Vha26\n  Vha13--Vha26\n  Vha13--fu\n  Vha13--fu\n  Vha13--lace\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mitf--Vha13\n  Mitf--Vha26\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--Vha13\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG12620--CG16812\n  CG16812--CG16812\n  CG16812--CG2926\n  CG16812--CG3338\n  CG16812--CG7928\n  CG16812--CTCF\n  CG16812--Moe\n  CG16812--eIF4E-7\n  CG16812--mle\n  CG2926--Moe\n  CG7928--CG7928\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n  CTCF--CTCF\n  Moe--Moe\n  mle--mle\n\nCO-FRACTIONATION INTERACTIONS:\n  CTCF--CTCF\n  CTCF--CTCF\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CTCF--CTCF\n\nPCA INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n\nNETWORK SUMMARY: 9 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Swim, TBPH, cer, per, wg, zormin\n\nTWO-HYBRID INTERACTIONS:\n  Swim--TBPH\n  Swim--cer\n  Swim--per\n  Swim--zormin\n  TBPH--TBPH\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Swim--wg\n  per--per\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Swim--wg\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Swim, TBPH, cer, per, wg, zormin\n\nTWO-HYBRID INTERACTIONS:\n  Swim--TBPH\n  Swim--cer\n  Swim--per\n  Swim--zormin\n  TBPH--TBPH\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Swim--wg\n  per--per\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  TBPH--TBPH\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n  per--per\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Swim--wg\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG9288, CG3709\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2\n\nTWO-HYBRID INTERACTIONS:\n  CG9288--Ef1alpha48D\n  CG9288--MBD-R2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3709--CG7407\n  CG3709--CG9288\n  CG4325--CG9288\n  CG7407--CG9288\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10550, CG1746, CG9986\n\nTWO-HYBRID INTERACTIONS:\n  CG10550--CG1746\n  CG10550--CG9986\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG13996\n\nPredict the interactions for CG13996:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10550--CG13996"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Axud1, CG8907, Prpk, S6k"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG8907, Prpk, S6k\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--Prpk\n  CG8907--Prpk\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prpk--S6k\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11407, CG16817, IntS4, abs, asl\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n  asl--asl\n  asl--asl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--CG16817\n  CG11407--asl\n  abs--asl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  asl--asl\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, CG16817, IntS4, abs, asl\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n  asl--asl\n  asl--asl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--CG16817\n  CG11407--abs\n  CG11407--asl\n  CG16817--asl\n  abs--asl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  asl--asl\n  asl--asl\n\nCO-FRACTIONATION INTERACTIONS:\n  asl--asl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  asl--asl\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG11300--CG12491\n  CG11300--CG31029\n  CG11300--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  lwr--lwr\n  lwr--lwr\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG11300--CG12491\n  CG11300--CG14074\n  CG11300--CG2852\n  CG11300--CG31029\n  CG11300--ball\n  CG11300--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  lwr--lwr\n  lwr--lwr\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15036, CG6443, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG15036--CG6443\n  CG6443--Nha1\n  CG6443--RpL3\n  CG6443--RpS24\n  CG6443--Sec24CD\n  CG6443--ebo\n  CG6443--mRpS18B\n  CG6443--mts\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL3--RpS24\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: Mpc1\n\nPredict the interactions for Mpc1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6443--Mpc1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX\n- Network density: approximately 3.10\n- Hub proteins (highly connected): TP53, SMAD4\n- Total interactions: approximately 65"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX\n\nTWO-HYBRID INTERACTIONS:\n  HDAC7--TIAF1\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  SMAD4--WWOX\n  TIAF1--TRIB3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  WWOX--WWOX\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  TIAF1--TRIB3\n  TIAF1--TRIB3\n  TIAF1--WWOX\n  TIAF1--WWOX\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  TP53--WWOX\n\nFRET INTERACTIONS:\n  SMAD4--TIAF1\n  SMAD4--WWOX\n  TIAF1--TIAF1\n  TIAF1--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TRIB3--TRIB3\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nNETWORK SUMMARY: 7 proteins, 65 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF\n\nTWO-HYBRID INTERACTIONS:\n  PI31--PI31\n  ntc--skpA\n  ntc--skpB\n  ntc--skpF\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cul1--skpA\n  Cul1--skpB\n  PI31--Prosalpha7\n  PI31--ntc\n  skpA--skpB\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cul1--Cul1\n  Cul1--ntc\n  Cul1--skpA\n  PI31--Prosalpha7\n  PI31--ntc\n\nNETWORK SUMMARY: 9 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG5783--ntc\n  PI31--PI31\n  PI31--ntc\n  Vsx2--ntc\n  ntc--skpA\n  ntc--skpB\n  ntc--skpF\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cul1--skpA\n  Cul1--skpB\n  PI31--Prosalpha7\n  PI31--ntc\n  skpA--skpB\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cul1--Cul1\n  Cul1--ntc\n  Cul1--skpA\n  PI31--Prosalpha7\n  PI31--Prosalpha7\n  PI31--ntc\n  Prosalpha7--ntc\n  ntc--skpA\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10257, alpha-catenin-related, bur\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG10257, alpha-catenin-related\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10257, alpha-catenin-related, bur\n\nTWO-HYBRID INTERACTIONS:\n  CG10257--alpha-catenin-related\n  CG10257--alpha-catenin-related\n  CG10257--bur\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10126, CG6020, Smn, ced-6, crn, rti, rux\n- Network density: approximately 0.71\n- Hub proteins (highly connected): Smn, CG10126\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10126, CG6020, Smn, ced-6, crn, rti, rux\n\nTWO-HYBRID INTERACTIONS:\n  CG10126--ced-6\n  CG10126--crn\n  Smn--Smn\n  Smn--Smn\n  Smn--Smn\n  crn--rux\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--CG6020\n  CG10126--Smn\n  CG10126--rti\n  CG10126--rux\n  CG6020--rti\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Smn--Smn\n  Smn--Smn\n  ced-6--ced-6\n\nNETWORK SUMMARY: 7 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11134, CG30089, Su(dx), l(3)L1231, yki"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG30089, Su(dx), l(3)L1231, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--Su(dx)\n  CG11134--l(3)L1231\n  CG11134--yki\n  CG30089--yki\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps\n\nTWO-HYBRID INTERACTIONS:\n  CG1324--CG42674\n  CG17107--CG42674\n  CG42674--MRG15\n  CG42674--RecQ4\n  CG42674--Sec5\n  CG42674--Zasp66\n  CG42674--kermit\n  CG42674--raps\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10824, CG11320, CG1943, bdg, dpr2, dpr3, dpr4, dpr5, dpr7\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  CG11320--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--CG11320\n  CG10824--CG11320\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr4\n  CG10824--dpr4\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  dpr3--dpr7\n  dpr3--dpr7\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr2\n  CG11320--dpr3\n  CG11320--dpr4\n  CG11320--dpr5\n  CG11320--dpr7\n\nNETWORK SUMMARY: 9 proteins, 25 interactions\n\nNew protein to integrate: dpr\n\nPredict the interactions for dpr:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG11320--dpr\n  CG11320--dpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000\n\nTWO-HYBRID INTERACTIONS:\n  CG9170--mGluR\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CaMKII--mGluR\n  Fmr1--mGluR\n  Psn--mGluR\n  gb--mGluR\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fmr1--Fmr1\n  homer--mGluR\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n\nPCA INTERACTIONS:\n  Psn--Psn\n  Psn--Psn\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000\n\nTWO-HYBRID INTERACTIONS:\n  CG9170--mGluR\n  Psn--Psn\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CaMKII--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Psn--mGluR\n  gb--mGluR\n  mGluR--mir-1000\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CaMKII--Fmr1\n  Fmr1--Fmr1\n  Fmr1--Fmr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fmr1--Fmr1\n  homer--mGluR\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n\nCO-FRACTIONATION INTERACTIONS:\n  CaMKII--CaMKII\n\nPCA INTERACTIONS:\n  Psn--Psn\n  Psn--Psn\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Psn--Psn\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG3353\n  CG3353--CG3919\n  CG3353--Hel25E\n  CG3353--Mlf\n  CG3353--NFAT\n  CG3353--cindr\n  CG3919--CG3919\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fancd2--Fancd2\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG3353\n  CG3353--CG3919\n  CG3353--Fancd2\n  CG3353--Hel25E\n  CG3353--Mlf\n  CG3353--NFAT\n  CG3353--RpL40\n  CG3353--cindr\n  CG3353--esn\n  CG3919--CG3919\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fancd2--Fancd2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg\n\nTWO-HYBRID INTERACTIONS:\n  Cyp4p2--por\n  Vap-33B--por\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Wnt4--wg\n  nkd--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  nkd--por\n  nkd--wg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Wnt10--por\n  Wnt2--por\n  Wnt6--por\n  por--wg\n  por--wg\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg\n\nTWO-HYBRID INTERACTIONS:\n  Cyp4p2--por\n  Nsf2--Nsf2\n  Vap-33B--por\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Wnt4--wg\n  nkd--wg\n  nkd--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nsf2--por\n  Nsf2--wg\n  nkd--por\n  nkd--wg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Wnt10--por\n  Wnt2--por\n  Wnt4--por\n  Wnt6--por\n  por--wg\n  por--wg\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG10657\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10657--CG13887\n  CG10657--CG4119\n  CG10657--Df31\n  CG10657--FK506-bp2\n  CG10657--Ssb-c31a\n  CG10657--snRNP-U1-70K\n  CG13887--CG4119\n  CG13887--Df31\n  CG4119--Df31\n  Df31--FK506-bp2\n  Df31--Ssb-c31a\n  Ssb-c31a--abs\n  Ssb-c31a--snRNP-U1-70K\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG10657\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Act5C--CG10657\n  CG10657--CG13887\n  CG10657--CG4119\n  CG10657--Df31\n  CG10657--FK506-bp2\n  CG10657--Ssb-c31a\n  CG10657--abs\n  CG10657--snRNP-U1-70K\n  CG13887--CG4119\n  CG13887--Df31\n  CG4119--Df31\n  CG4119--Ssb-c31a\n  CG4119--abs\n  CG4119--snRNP-U1-70K\n  Df31--FK506-bp2\n  Df31--Ssb-c31a\n  FK506-bp2--Ssb-c31a\n  Ssb-c31a--abs\n  Ssb-c31a--snRNP-U1-70K\n  abs--snRNP-U1-70K\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11337, CG31121, CG7386, Tom20, a, sol, zuc\n- Network density: approximately 0.62\n- Hub proteins (highly connected): zuc, CG11337\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG31121, CG7386, Tom20, a, sol, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG11337--CG7386\n  CG11337--a\n  CG11337--sol\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--Tom20\n  CG11337--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10559, CG1690, eIF4E-5, eIF4E-7\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-5\n  CG1690--eIF4E-7\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG1690, eIF4E-5, eIF4E-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG1690\n  CG1690--eIF4E-5\n  CG1690--eIF4E-7\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13014, CG14905, CG34165, CG3652, CG8116, CG8248, NimC1, Syx6, Syx8\n\nTWO-HYBRID INTERACTIONS:\n  CG13014--CG8248\n  CG14905--CG8248\n  CG14905--NimC1\n  CG34165--CG8248\n  CG3652--CG8248\n  CG8116--CG8248\n  CG8248--NimC1\n  CG8248--Syx6\n  CG8248--Syx8\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG5059\n\nPredict the interactions for CG5059:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5059--CG5059\n  CG5059--CG8248"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz\n- Network density: approximately 0.57\n- Hub proteins (highly connected): spz, Arp5\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--CG33017\n  Arp5--CSN4\n  Arp5--Rap2l\n  Arp5--rasp\n  Arp5--spz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp5--CG12659\n  Arp5--CG12659\n  Arp5--pho\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  spz--spz\n\nCO-FRACTIONATION INTERACTIONS:\n  spz--spz\n  spz--spz\n  spz--spz\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spz--spz\n\nCO-LOCALIZATION INTERACTIONS:\n  spz--spz\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  spz--spz\n  spz--spz\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10324, CG2993, CG31712, CG3542, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--l(2)37Cb\n  awd--awd\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG2993--l(2)37Cb\n  CG31712--CG3542\n  CG31712--l(2)37Cb\n  CG31712--regucalcin\n  CG3542--l(2)37Cb\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n  Sh3beta--awd\n  Sh3beta--l(2)37Cb\n  Sh3beta--regucalcin\n  awd--l(2)37Cb\n  awd--regucalcin\n  l(2)37Cb--regucalcin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--l(2)37Cb\n\nCO-FRACTIONATION INTERACTIONS:\n  awd--awd\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  awd--awd\n\nNETWORK SUMMARY: 9 proteins, 24 interactions\n\nNew protein to integrate: GstO3\n\nPredict the interactions for GstO3:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG31712--GstO3\n  GstO3--Sh3beta\n  GstO3--awd\n  GstO3--l(2)37Cb\n  GstO3--regucalcin"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip\n- Network density: approximately 0.58\n- Hub proteins (highly connected): zip, Pglym87\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG10750--Pglym87\n  CG14232--Pglym87\n  CG14232--TFAM\n  Mlc-c--TFAM\n  Pglym87--TFAM\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17027--Pglym78\n  CG17027--Pglym87\n  Fas2--Pglym87\n  Fas2--Pglym87\n  Mlc-c--Pglym87\n  Mlc-c--zip\n  Mlc-c--zip\n  Pglym78--Pglym87\n  Pglym87--zip\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Mlc-c--zip\n  Mlc-c--zip\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO1, Mlp84B, Ssl1, ct, mus304"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, Mlp84B, Ssl1, ct, mus304\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Ssl1\n  Mlp84B--Ssl1\n  Ssl1--mus304\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ssl1--ct\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11275, CG13168, CG14183, CG15631, CG32086, CanA1, Pp2B-14D, Sxl, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--hoe1\n  CG13168--hoe1\n  CG14183--hoe1\n  CG15631--CG32086\n  CG15631--hoe1\n  CG32086--hoe1\n  CanA1--hoe1\n  Pp2B-14D--hoe1\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CanA1--Pp2B-14D\n\nPROTEIN-RNA INTERACTIONS:\n  Sxl--hoe1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: CG8840\n\nPredict the interactions for CG8840:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8840--hoe1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10565, CG11852, CG17819, CG8508"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG11852, CG17819, CG8508\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG11852\n  CG11852--CG8508\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11852--CG17819\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CAP--CG10440\n  CG10440--CG10440\n  CG10440--CG14074\n  CG10440--CG32354\n  CG10440--PICK1\n  CG10440--TfAP-2\n  CG10440--lwr\n  CG10440--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  PICK1--PICK1\n  lwr--lwr\n  lwr--lwr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10440--TfAP-2\n  CG10440--TfAP-2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n  PICK1--PICK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10440--CG2611\n  CG10440--Doc3\n\nNETWORK SUMMARY: 9 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11125, CG13023, CG13868, Ssu72\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG13023--CG13868\n  CG13868--Ssu72\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13023, CG13868, Ssu72\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG13023--CG13868\n  CG13868--Ssu72\n  Ssu72--Ssu72\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10139, Hug, PK2-R1, PK2-R2, TrpA1\n- Network density: approximately 0.50\n- Hub proteins (highly connected): Hug, CG10139\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Hug, PK2-R1, PK2-R2, TrpA1\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--Hug\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Hug--PK2-R1\n  Hug--PK2-R2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hug--TrpA1\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n\nTWO-HYBRID INTERACTIONS:\n  CG13293--CG6175\n  CG6175--CycK\n  CG6175--Pp2A-29B\n  CG6175--Prosbeta3\n  CG6175--Tektin-A\n  CG6175--ple\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n\nTWO-HYBRID INTERACTIONS:\n  CG13293--CG6175\n  CG6175--CSN8\n  CG6175--CycK\n  CG6175--Pp2A-29B\n  CG6175--Prosbeta3\n  CG6175--Rcd5\n  CG6175--Tektin-A\n  CG6175--betaggt-II\n  CG6175--ple\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CTPsyn, ewg, ssp\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10324--CG11266\n  CG10324--CG6340\n  CG11266--CG11266\n  CG11266--CG6340\n  CG13310--CG6340\n  CG6340--ewg\n  CG6340--ssp\n  CTPsyn--CTPsyn\n  ssp--ssp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10209--CG10585\n  CG10209--CG6340\n  CG10585--CG6340\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6340--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 9 proteins, 17 interactions\n\nNew protein to integrate: CG6843\n\nPredict the interactions for CG6843:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10324--CG6843\n  CG11266--CG6843\n  CG6340--CG6843\n  CG6843--CG6843"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10324--CG11266\n  CG10324--CG6340\n  CG10324--CG6843\n  CG11266--CG11266\n  CG11266--CG6340\n  CG11266--CG6843\n  CG13310--CG6340\n  CG6340--CG6843\n  CG6340--ewg\n  CG6340--ssp\n  CG6843--CG6843\n  CTPsyn--CTPsyn\n  ssp--ssp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10209--CG10585\n  CG10209--CG6340\n  CG10585--CG6340\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6340--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Jwa, alphaCOP, epsilonCOP, fra, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jwa, alphaCOP, epsilonCOP, fra, rti\n\nTWO-HYBRID INTERACTIONS:\n  Jwa--epsilonCOP\n  alphaCOP--epsilonCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaCOP--rti\n  fra--fra\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  alphaCOP--rti\n  epsilonCOP--fra\n  epsilonCOP--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima\n- Network density: approximately 0.38\n- Hub proteins (highly connected): CG12391, Hr78\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima\n\nTWO-HYBRID INTERACTIONS:\n  CG10631--CG12391\n  CG12391--CG9331\n  CG12391--Hr78\n  CG12391--Sp1\n  CG12391--fd19B\n  Hr78--Sp1\n  Hr78--fd19B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12391--sima\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2641, CG8494, Tom20, fd64A, zuc\n- Network density: approximately 1.00\n- Hub proteins (highly connected): zuc, Tom20\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2641, CG8494, Tom20, fd64A, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8494--fd64A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2641--CG8494\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--Tom20\n  CG8494--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty\n\nTWO-HYBRID INTERACTIONS:\n  Abd-B--CG1486\n  CG10252--CG1486\n  CG1486--CG15712\n  CG1486--CG4116\n  CG1486--CG7712\n  CG1486--H2.0\n  CG1486--ci\n  CG1486--elfless\n  CG1486--sty\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, cindr, esn\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG3353\n  CG3353--CG3919\n  CG3353--Fancd2\n  CG3353--Hel25E\n  CG3353--Mlf\n  CG3353--NFAT\n  CG3353--cindr\n  CG3353--esn\n  CG3919--CG3919\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fancd2--Fancd2\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: RpL40\n\nPredict the interactions for RpL40:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3353--RpL40"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10324--CG11266\n  CG11266--CG6340\n  CG11266--CG6843\n  CG13310--CG6340\n  CG6340--CG6843\n  CG6340--ewg\n  CG6340--ssp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10209--CG10585\n  CG10209--CG6340\n  CG10585--CG6340\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6340--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10324--CG11266\n  CG10324--CG6340\n  CG10324--CG6843\n  CG11266--CG11266\n  CG11266--CG6340\n  CG11266--CG6843\n  CG13310--CG6340\n  CG6340--CG6843\n  CG6340--ewg\n  CG6340--ssp\n  CG6843--CG6843\n  CTPsyn--CTPsyn\n  ssp--ssp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10209--CG10585\n  CG10209--CG6340\n  CG10585--CG6340\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6340--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg\n\nTWO-HYBRID INTERACTIONS:\n  AP-1gamma--CG15185\n  CG12115--CG15185\n  CG15185--CG7786\n  CG15185--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg\n\nTWO-HYBRID INTERACTIONS:\n  AP-1gamma--CG15185\n  CG12115--CG15185\n  CG15185--CG7786\n  CG15185--osk\n  CG15185--sgg\n\nFRET INTERACTIONS:\n  CG7786--CG7786\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG7191, CG10336\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG14866, CG1671, CG5191, CG7191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG14866--CG7191\n  CG1671--CG7191\n  CG5191--CG7191\n  CG7191--Capa\n  CG7191--Gad1\n  CG7191--Oatp58Db\n  CG7191--Pex19\n  CG7191--lectin-33A\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG10559, CG1690\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG13427\n  CG10559--CG1690\n  CG10559--CG18624\n  CG10559--Ef1alpha48D\n  CG10559--Indy\n  CG10559--LpR1\n  CG10559--NimC1\n  CG10559--cold\n  CG10559--gb\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11534, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG32846\n  CG30324--hale\n  CG32846--D\n  CG32846--hale\n  CycK--D\n  CycK--hale\n  D--D\n  D--D\n  RpL3--hale\n  hale--hale\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG17328\n\nPredict the interactions for CG17328:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11534--CG17328\n  CG17328--CG30324\n  CG17328--CG32846\n  CG17328--CycK\n  CG17328--D\n  CG17328--Hr78\n  CG17328--RpL3\n  CG17328--cg\n  CG17328--hale"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13623, CG2233, CG9254, Not1, RpL12, ssx\n\nNETWORK SUMMARY: 6 proteins, 0 interactions\n\nNew protein to integrate: Lap1\n\nPredict the interactions for Lap1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13623--Lap1\n  CG2233--Lap1\n  CG9254--Lap1\n  Lap1--Not1\n  Lap1--RpL12\n  Lap1--ssx"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A\n- Network density: approximately 1.33\n- Hub proteins (highly connected): UNC5A, DAPK1\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A\n\nTWO-HYBRID INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--DDX39A\n  FANCC--FANCC\n  FANCC--UNC5A\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n  MAGED1--UNC5A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  MAGED1--UNC5A\n  NTN1--UNC5A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--UNC5A\n  FANCC--UNC5A\n  FANCC--UNC5A\n  MAGED1--UNC5A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--UNC5A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX39A--DDX39A\n\nNETWORK SUMMARY: 6 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG30393, CG44001, Elp1, jbug"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG30393, CG44001, Elp1, jbug\n\nTWO-HYBRID INTERACTIONS:\n  CG30393--CG44001\n  CG30393--Elp1\n  CG30393--jbug\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS\n- Network density: approximately 1.00\n- Hub proteins (highly connected): Drep-1, Rtnl1\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-gln--SpdS\n  CG14207--Drep-1\n  CG14207--SpdS\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Drep-1--SpdS\n  Rtnl1--Rtnl1\n  Rtnl1--SpdS\n  Rtnl1--SpdS\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11190, CG4406, CG5973, PIG-S, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG4406, CG5973, PIG-S, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--CG4406\n  CG11190--PIG-S\n  CG11190--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG1324--CG42674\n  CG17107--CG42674\n  CG42674--MRG15\n  CG42674--RecQ4\n  CG42674--Sec5\n  CG42674--Zasp66\n  CG42674--kermit\n\nNETWORK SUMMARY: 8 proteins, 7 interactions\n\nNew protein to integrate: raps\n\nPredict the interactions for raps:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42674--raps"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10157, CG8290, Cul2, MEP-1, PCNA, tou\n\nTWO-HYBRID INTERACTIONS:\n  Cul2--MEP-1\n  Cul2--PCNA\n  MEP-1--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 6 proteins, 16 interactions\n\nNew protein to integrate: lig3\n\nPredict the interactions for lig3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10157--lig3\n  CG8290--lig3\n  Cul2--lig3\n  MEP-1--lig3\n  PCNA--lig3\n  lig3--tou"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai\n- Network density: approximately 0.67\n- Hub proteins (highly connected): Su(var)205, CG11474\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai\n\nTWO-HYBRID INTERACTIONS:\n  CG11474--CG5149\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Atg8a--CG11474\n  Atg8a--Su(var)205\n  CG11474--CG17746\n  CG11474--CG7737\n  CG11474--Su(var)205\n  CG11474--stai\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10616, CG14232, CG16781, CG4955, CG5906"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG14232, CG16781, CG4955, CG5906\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG4955\n  CG14232--CG4955\n  CG16781--CG4955\n  CG4955--CG5906\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21\n\nTWO-HYBRID INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FMR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--GRIP2\n  FXR1--FXR1\n  FXR1--GRIP2\n  GFI1B--GRIP2\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FXR1\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  PPFIA1--PPFIA1\n  PPFIA1--PPFIA1\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  ERC2--GRIP2\n  ERC2--PPFIA1\n  ERC2--PPFIA1\n  FMR1--FMR1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GRIP2\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GRIP2--PPFIA1\n  GRIP2--PPFIA1\n  TRIM21--TRIM21\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RNF8--RNF8\n  RNF8--RNF8\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nCO-PURIFICATION INTERACTIONS:\n  FMR1--FXR1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--TRIM21\n  KRAS--KRAS\n  KRAS--KRAS\n  RNF8--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  FMR1--KRAS\n  GRIP2--KRAS\n  KRAS--KRAS\n\nPOSITIVE GENETIC INTERACTIONS:\n  GFI1B--GFI1B\n\nFRET INTERACTIONS:\n  KRAS--KRAS\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--RNF8\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--PPFIA1\n  KRAS--PPFIA1\n\nNEGATIVE GENETIC INTERACTIONS:\n  KRAS--KRAS\n\nPCA INTERACTIONS:\n  KRAS--KRAS\n\nNETWORK SUMMARY: 10 proteins, 83 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50\n- Network density: approximately 0.36\n- Hub proteins (highly connected): Spred, CG10209\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--Spred\n  CG10209--Vsx2\n  CG9331--Spred\n  Pms2--Spred\n  Spred--Vsx2\n  Spred--angel\n  Spred--hale\n  Spred--ms(3)K81\n  Spred--ttm50\n  Vsx2--hale\n  hale--hale\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Spred--stau\n  stau--stau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stau--stau\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14372, beat-IIa, dm, side\n- Network density: approximately 0.83\n- Hub proteins (highly connected): beat-IIa, CG14372\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14372, beat-IIa, dm, side\n\nTWO-HYBRID INTERACTIONS:\n  beat-IIa--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14372--beat-IIa\n  CG14372--beat-IIa\n  beat-IIa--side\n  beat-IIa--side\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10321, CG12576, CG42359, Tsp42Ek, zf30C"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG12576, CG42359, Tsp42Ek, zf30C\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--Tsp42Ek\n  CG12576--Tsp42Ek\n  CG42359--Tsp42Ek\n  Tsp42Ek--zf30C\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10321, CG14811, Fas2\n- Network density: approximately 1.33\n- Hub proteins (highly connected): Fas2, CG14811\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG14811, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG14811\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14811--Fas2\n  CG14811--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w\n\nTWO-HYBRID INTERACTIONS:\n  CG14445--Gas41\n  CG14818--Gas41\n  DMAP1--Gas41\n  Gas41--Snx16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcr-1--w\n  Dcr-1--w\n  Gas41--w\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-1--Gas41\n  Gas41--armi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-1--Gas41\n  Dcr-1--Gas41\n  Gas41--Tip60\n  Gas41--pont\n  Tip60--pont\n  Tip60--pont\n  armi--armi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DMAP1--pont\n  Gas41--pont\n  Tip60--pont\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11125, CG13023, CG13868\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG13023--CG13868\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Ssu72\n\nPredict the interactions for Ssu72:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13868--Ssu72\n  Ssu72--Ssu72"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG9821, Dcp1, Mst84Dc, cdc2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9821, Dcp1, Mst84Dc, cdc2\n\nTWO-HYBRID INTERACTIONS:\n  CG9821--Dcp1\n  CG9821--Mst84Dc\n  CG9821--cdc2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n\nTWO-HYBRID INTERACTIONS:\n  CG13074--Cdlc2\n  CG13074--Pvf1\n  CG13074--RpL15\n  CG13074--RpL19\n  CG13074--robl\n  RpL19--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL15--RpL19\n  RpL15--RpL41\n  RpL19--RpL41\n  ctp--ctp\n  ctp--robl\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n\nTWO-HYBRID INTERACTIONS:\n  CG13074--Cdlc2\n  CG13074--Gapdh1\n  CG13074--Pvf1\n  CG13074--RpL15\n  CG13074--RpL19\n  CG13074--RpL41\n  CG13074--ctp\n  CG13074--robl\n  CG13074--robl\n  RpL19--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL15--RpL19\n  RpL15--RpL41\n  RpL19--RpL41\n  ctp--ctp\n  ctp--robl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 9 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15293, CG5013, TfIIEalpha, TfIIEbeta\n\nTWO-HYBRID INTERACTIONS:\n  CG15293--TfIIEalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15293, CG5013, TfIIEalpha, TfIIEbeta\n\nTWO-HYBRID INTERACTIONS:\n  CG15293--TfIIEalpha\n  CG5013--TfIIEalpha\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty\n\nTWO-HYBRID INTERACTIONS:\n  CG10154--CG43896\n  CG10154--gce\n  CG17107--CG43896\n  CG43896--CG6707\n  CG43896--Usp7\n  CG43896--cact\n  CG43896--gce\n  CG43896--odd\n  CG43896--sty\n  cact--cact\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  cact--cact\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Usp7--Usp7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Usp7--Usp7\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG31624, CG31988, CG8136, inaD, kermit, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31624, CG31988, CG8136, inaD, kermit, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG31624--CG8136\n  CG31988--CG8136\n  CG8136--inaD\n  CG8136--kermit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  inaD--inaD\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG31624--rti\n  CG8136--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10869, CG9986, CoVa, nonA-l\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10869, nonA-l\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG9986, CoVa, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--CG9986\n  CG10869--CoVa\n  CG10869--nonA-l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2\n\nTWO-HYBRID INTERACTIONS:\n  CG10590--CG11753\n  CG11753--CG17162\n  CG11753--CG40127\n  CG11753--RpS14a\n  CG11753--RpS14b\n\nCO-FRACTIONATION INTERACTIONS:\n  RpS14a--RpS14b\n  RpS14a--RpS8\n  RpS14b--RpS8\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2\n\nTWO-HYBRID INTERACTIONS:\n  CG10590--CG11753\n  CG11753--CG17162\n  CG11753--CG40127\n  CG11753--CG9090\n  CG11753--RpS14a\n  CG11753--RpS14b\n  CG11753--RpS8\n  CG11753--Tim17b2\n\nCO-FRACTIONATION INTERACTIONS:\n  RpS14a--RpS14b\n  RpS14a--RpS8\n  RpS14b--RpS8\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10014, CG11327, CG17770, CG32392, Cam, Poxm\n\nTWO-HYBRID INTERACTIONS:\n  CG10014--CG11327\n  CG10014--CG17770\n  CG10014--Cam\n  CG10014--Cam\n  CG10014--Poxm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10014--CG32392\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10014, CG11327, CG17770, CG32392, Cam, Poxm\n\nTWO-HYBRID INTERACTIONS:\n  CG10014--CG11327\n  CG10014--CG17770\n  CG10014--Cam\n  CG10014--Cam\n  CG10014--Poxm\n  CG32392--Poxm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10014--CG32392\n  CG10014--CG32392\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10014--CG32392\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11381, CG8368, MCPH1, Sgt\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG11381, Sgt\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11381, CG8368, MCPH1, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11381--CG8368\n  CG11381--MCPH1\n  CG11381--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--CG7156\n  CG31064--CG31064\n  CG31064--CG7156\n  CG7156--Prosalpha5\n  CG7156--Prosalpha5\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--CG7156\n  CG31064--CG31064\n  CG31064--CG7156\n  CG3309--CG7156\n  CG7156--Prosalpha5\n  CG7156--Prosalpha5\n  CG7156--ldbr\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim\n\nTWO-HYBRID INTERACTIONS:\n  CG8188--org-1\n  RASSF8--RASSF8\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  dm--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--Traf6\n  CG8188--aop\n  CG8188--dm\n  aop--aop\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, loco, org-1, tau, tim\n\nTWO-HYBRID INTERACTIONS:\n  CG8188--RASSF8\n  CG8188--org-1\n  RASSF8--RASSF8\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  dm--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--Traf6\n  CG8188--Vap-33A\n  CG8188--aop\n  CG8188--dm\n  CG8188--loco\n  CG8188--tau\n  CG8188--tim\n  Traf6--Traf6\n  aop--aop\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atg1, CG10103, CG12082, RpS27A, okr, th\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--CG12082\n  CG12082--okr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg1--CG12082\n  CG12082--RpS27A\n  RpS27A--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG12082--th\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Atg1--CG12082\n\nCO-LOCALIZATION INTERACTIONS:\n  Atg1--CG12082\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg1, CG10103, CG12082, RpS27A, okr, th\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--CG12082\n  CG12082--okr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg1--CG12082\n  CG12082--RpS27A\n  RpS27A--th\n  th--th\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Atg1--Atg1\n  Atg1--Atg1\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg1--th\n  CG12082--th\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Atg1--CG12082\n\nCO-LOCALIZATION INTERACTIONS:\n  Atg1--CG12082\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG32447, Rcd5, kermit, sinu\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG32447, kermit\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32447, Rcd5, kermit, sinu\n\nTWO-HYBRID INTERACTIONS:\n  CG32447--Rcd5\n  CG32447--kermit\n  CG32447--sinu\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66\n- Network density: approximately 0.25\n- Hub proteins (highly connected): CG2061, eIF-3p66\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG2061\n  CG2061--CG32694\n  CG2061--CG6287\n  CG2061--CG9986\n  CG2061--Dpy-30L2\n  CG2061--RpL7\n  CG2061--eIF-3p66\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev\n\nTWO-HYBRID INTERACTIONS:\n  CG8128--Nf-YB\n  Mes4--Nf-YB\n  Nf-YA--Nf-YA\n  Nf-YA--Nf-YC\n  Nf-YB--Nf-YC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YC\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Nf-YA--phl\n  Nf-YA--sev\n  Nf-YB--phl\n  Nf-YB--sev\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG31550, Chro, Gale, Galk, Sec24AB, TTLL3B, UGP, bsh, sgl\n\nTWO-HYBRID INTERACTIONS:\n  Gale--Gale\n  UGP--UGP\n\nNETWORK SUMMARY: 9 proteins, 2 interactions\n\nNew protein to integrate: Galt\n\nPredict the interactions for Galt:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG31550--Galt\n  Chro--Galt\n  Galt--Sec24AB\n  Galt--TTLL3B\n  Galt--bsh\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galt--sgl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gale--Galt\n  Gale--Galt\n  Galt--UGP\n  Galt--UGP"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Lapsyn, Traf-like, dod, flw\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: CG10889\n\nPredict the interactions for CG10889:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG10889--Traf-like\n  CG10889--dod\n  CG10889--flw"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Act5C, CG5642, Cpr64Ad, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n\nTWO-HYBRID INTERACTIONS:\n  Act5C--Cpr64Ad\n  Act5C--IntS14\n  CG5642--IntS14\n  Cpr64Ad--IntS14\n  IntS10--IntS14\n  IntS10--IntS14\n  IntS14--RpL4\n  IntS14--eIF-4a\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS11--IntS12\n  IntS11--IntS14\n  IntS12--IntS14\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: IntS1\n\nPredict the interactions for IntS1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS1--IntS11\n  IntS1--IntS12\n  IntS1--IntS14\n\nTWO-HYBRID INTERACTIONS:\n  IntS1--IntS12"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--nonA-l\n  CG5376--nonA-l\n  CG6425--nonA-l\n  CG8128--nonA-l\n  Klc--Klc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dos--nonA-l\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--nonA-l\n  CG5376--CG5376\n  CG5376--nonA-l\n  CG6425--nonA-l\n  CG8128--nonA-l\n  Klc--Klc\n  Klc--nonA-l\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dos--nonA-l\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10887--CG12674\n  CG10887--Dip-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--CG1104\n  CG10887--CG31954\n  CG10887--CG9008\n  CG10887--Hsc70-1\n  CG10887--Hsc70-2\n  CG10887--clu\n  Hsc70-1--Hsc70-2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  clu--clu\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10887--CG12674\n  CG10887--Dip-B\n  Dip-B--Dip-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--CG1104\n  CG10887--CG31954\n  CG10887--CG9008\n  CG10887--Hsc70-1\n  CG10887--Hsc70-2\n  CG10887--clu\n  CG10887--lbl\n  Hsc70-1--Hsc70-2\n  Hsc70-1--clu\n  Hsc70-2--clu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  clu--clu\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10353, CG13296, CG32100, CG45057, mri\n\nTWO-HYBRID INTERACTIONS:\n  CG10353--CG13296\n  CG10353--CG32100\n  CG10353--CG45057\n  CG10353--mri\n  CG32100--CG32100\n  mri--mri\n\nNETWORK SUMMARY: 5 proteins, 6 interactions\n\nNew protein to integrate: Nup93-1\n\nPredict the interactions for Nup93-1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10353--Nup93-1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n- Network density: approximately 0.57\n- Hub proteins (highly connected): slif, sav\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n\nTWO-HYBRID INTERACTIONS:\n  CG42676--slif\n  CG5375--slif\n  Src64B--Src64B\n  Src64B--slif\n  sav--slif\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Pten--slif\n  hppy--slif\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gcn2--slif\n  Pten--hppy\n  Pten--slif\n  hppy--slif\n\nFRET INTERACTIONS:\n  sav--sav\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Pten--Pten\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG5280, CG18619\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5\n\nTWO-HYBRID INTERACTIONS:\n  CG10466--CG5280\n  CG12496--CG5280\n  CG12496--CG7352\n  CG13032--CG5280\n  CG15646--CG5280\n  CG18619--CG5280\n  CG5062--CG5280\n  CG5280--CG7352\n  CG5280--CG8301\n  CG5280--Evi5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CtBP, Lim3, NK7.1, Ubx, abd-A\n\nTWO-HYBRID INTERACTIONS:\n  Lim3--NK7.1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n  CtBP--Ubx\n\nPCA INTERACTIONS:\n  CtBP--abd-A\n  NK7.1--Ubx\n  NK7.1--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CtBP--Ubx\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CtBP, Lim3, NK7.1, Ubx, abd-A\n\nTWO-HYBRID INTERACTIONS:\n  CtBP--CtBP\n  CtBP--NK7.1\n  Lim3--NK7.1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ubx--abd-A\n  Ubx--abd-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n  CtBP--Ubx\n\nPCA INTERACTIONS:\n  CtBP--Ubx\n  CtBP--Ubx\n  CtBP--abd-A\n  NK7.1--Ubx\n  NK7.1--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CtBP--Ubx\n\nNETWORK SUMMARY: 5 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3\n\nTWO-HYBRID INTERACTIONS:\n  COL23A1--EXOSC8\n  COL23A1--LSM8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  HNRNPL--HNRNPL\n\nDOSAGE RESCUE INTERACTIONS:\n  LSM8--LSM8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HNRNPL--HNRNPL\n  PLOD2--PLOD2\n  PLOD3--PLOD3\n\nCO-FRACTIONATION INTERACTIONS:\n  COLGALT1--PLOD2\n  COLGALT1--PLOD3\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  COL23A1--HNRNPL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  COL23A1--COLGALT1\n  COL23A1--PLOD2\n  COL23A1--PLOD3\n  COLGALT1--PLOD3\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HNRNPL\n  PLOD2--PLOD3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--HIST1H1E\n  COL23A1--HIST1H4A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HIST1H4A\n  HIST1H4A--HIST1H4A\n\nNETWORK SUMMARY: 9 proteins, 29 interactions\n\nNew protein to integrate: RPL10A\n\nPredict the interactions for RPL10A:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  HIST1H1E--RPL10A\n  HIST1H1E--RPL10A\n  HIST1H4A--RPL10A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--RPL10A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  RPL10A--RPL10A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arp10, CG12042, CG15631, CG17107, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n\nTWO-HYBRID INTERACTIONS:\n  CG15631--l(2)37Ce\n  CG17107--l(2)37Ce\n  betaTub60D--l(2)37Ce\n  dyn-p25--l(2)37Ce\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--CG12042\n  Arp10--dyn-p25\n  Arp10--l(2)06496\n  Arp10--l(2)37Ce\n  CG12042--dyn-p25\n  CG12042--l(2)06496\n  CG12042--l(2)37Ce\n  l(2)06496--l(2)37Ce\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG12042--Tom20\n  Tom20--Tom20\n  Tom20--l(2)37Ce\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: Dmn\n\nPredict the interactions for Dmn:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--Dmn\n  CG12042--Dmn\n  Dmn--dyn-p25\n  Dmn--l(2)06496\n  Dmn--l(2)37Ce"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG34324, rev7\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG17826--CG34324\n  CG17826--Cpr64Ad\n  CG34324--CG9572\n  CG34324--Cpr64Ad\n  CG34324--Mst87F\n  CG34324--Mst98Ca\n  CG34324--Mst98Cb\n  CG34324--NimC3\n  CG34324--rev7\n  CG34324--sxc\n  CG9572--Cpr64Ad\n  rev7--rev7\n  rev7--rev7\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Kdm2, Rca1, TFAM, olf413\n\nTWO-HYBRID INTERACTIONS:\n  Kdm2--olf413\n  TFAM--olf413\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Kdm2, Rca1, TFAM, olf413\n\nTWO-HYBRID INTERACTIONS:\n  Kdm2--olf413\n  Rca1--olf413\n  TFAM--olf413\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--eIF2B-beta\n  CG11876--CG11876\n  CG11876--eIF2B-beta\n  CG15169--eIF2B-beta\n  CG15478--eIF2B-beta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-beta--inv\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 7 proteins, 9 interactions\n\nNew protein to integrate: nop5\n\nPredict the interactions for nop5:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  eIF2B-beta--nop5"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n\nTWO-HYBRID INTERACTIONS:\n  BicC--CG11200\n  CG11200--CG33144\n  CG11200--CG7220\n  CG11200--CG8191\n  CG11200--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11200--CG1561\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  BicC--BicC\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BicC, CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n\nTWO-HYBRID INTERACTIONS:\n  BicC--CG11200\n  CG11200--CG33144\n  CG11200--CG7220\n  CG11200--CG8191\n  CG11200--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11200--CG1561\n  CG11200--CG17323\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  BicC--BicC\n\nPROTEIN-RNA INTERACTIONS:\n  BicC--BicC\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5151, CycG, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  CG5151--CycG\n  CG5151--mei-S332\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 3 proteins, 4 interactions\n\nNew protein to integrate: CG8191\n\nPredict the interactions for CG8191:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5151--CG8191"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG15036--CG6443\n  CG6443--Mpc1\n  CG6443--Nha1\n  CG6443--RpL3\n  CG6443--RpS24\n  CG6443--Sec24CD\n  CG6443--ebo\n  CG6443--mRpS18B\n  CG6443--mts\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL3--RpS24\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11523, CG30122, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG30122\n  CG11523--CG6428\n  CG11523--CG9791\n  CG11523--Hsc70-4\n  CG11523--bif\n  CG30122--CG30122\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11523--CG4325\n  CG11523--rti\n  CG11523--sgg\n  CG11523--sgg\n  CG11523--sgg\n  CG4325--sgg\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: CG42389\n\nPredict the interactions for CG42389:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11523--CG42389"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG12620--CG16812\n  CG16812--CG2926\n  CG16812--CG3338\n  CG16812--CG7928\n  CG16812--eIF4E-7\n  CG16812--mle\n  mle--mle\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7928--CG7928\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CTCF--CTCF\n\nPCA INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG12620--CG16812\n  CG16812--CG16812\n  CG16812--CG2926\n  CG16812--CG3338\n  CG16812--CG7928\n  CG16812--CTCF\n  CG16812--Moe\n  CG16812--eIF4E-7\n  CG16812--mle\n  CG2926--Moe\n  CG7928--CG7928\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n  CTCF--CTCF\n  Moe--Moe\n  mle--mle\n\nCO-FRACTIONATION INTERACTIONS:\n  CTCF--CTCF\n  CTCF--CTCF\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CTCF--CTCF\n\nPCA INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n\nNETWORK SUMMARY: 9 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Hsp68, Rtnl1, Xkrx, Zmynd10, tilB, yl\n\nTWO-HYBRID INTERACTIONS:\n  Hsp68--Zmynd10\n  Rtnl1--Rtnl1\n  Zmynd10--tilB\n  Zmynd10--yl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Zmynd10\n  Rtnl1--Zmynd10\n\nCO-FRACTIONATION INTERACTIONS:\n  Xkrx--Zmynd10\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: Nutm1\n\nPredict the interactions for Nutm1:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-FRACTIONATION INTERACTIONS:\n  Nutm1--Zmynd10"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17658, Pat1, scpr-B, scpr-C"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17658, Pat1, scpr-B, scpr-C\n\nTWO-HYBRID INTERACTIONS:\n  CG17658--Pat1\n  CG17658--scpr-B\n  CG17658--scpr-C\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  scpr-B--scpr-C\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5890, SIDL, SKIP, Shal, Tango2\n- Network density: approximately 0.70\n- Hub proteins (highly connected): Shal, SIDL\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5890, SIDL, SKIP, Shal, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG5890--Shal\n  SIDL--Shal\n  SKIP--Shal\n  Shal--Tango2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Shal\n  SIDL--Shal\n  SKIP--Shal\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: GATAe, GstE3, GstT1, RhoGDI, tamo\n\nTWO-HYBRID INTERACTIONS:\n  GATAe--GstE3\n  GstE3--tamo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstE3--GstT1\n  GstE3--RhoGDI\n  GstT1--RhoGDI\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tamo--tamo\n\nNETWORK SUMMARY: 5 proteins, 6 interactions\n\nNew protein to integrate: CG2025\n\nPredict the interactions for CG2025:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG2025--GstE3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, hpo, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG11180--CG14302\n  CG11180--CG31122\n  CG11180--CG3548\n  CG11180--Sap47\n  CG11180--hpo\n  CG11180--spn-A\n  CG3548--CG3548\n  hpo--hpo\n  spn-A--spn-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nFRET INTERACTIONS:\n  hpo--hpo\n\nPCA INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--Tsc1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tsc1--hpo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  hpo--hpo\n\nNETWORK SUMMARY: 8 proteins, 22 interactions\n\nNew protein to integrate: foxo\n\nPredict the interactions for foxo:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--foxo"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Fas2, Pkcdelta, Pvf1, robl\n- Network density: approximately 0.83\n- Hub proteins (highly connected): Pkcdelta, Fas2\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fas2, Pkcdelta, Pvf1, robl\n\nTWO-HYBRID INTERACTIONS:\n  Pkcdelta--Pvf1\n  Pkcdelta--robl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fas2--Pkcdelta\n  Fas2--Pkcdelta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1129, CG6576, CG8207, CycK, step\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG8207, step\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1129, CG6576, CG8207, CycK, step\n\nTWO-HYBRID INTERACTIONS:\n  CG1129--CG8207\n  CG1129--CG8207\n  CG6576--CG8207\n  CG8207--CycK\n  CG8207--step\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--lig3\n  CG8290--lig3\n  Cul2--MEP-1\n  Cul2--PCNA\n  Cul2--lig3\n  MEP-1--PCNA\n  MEP-1--lig3\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--lig3\n  lig3--tou\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Ibf2, Su(var)3-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10732--CG11454\n  CG11454--CG12470\n  CG11454--CG13083\n  CG11454--CG15771\n  CG11454--CG17599\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG11454--Su(var)3-7\n  CG13083--CG17599\n  CG17599--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: Dyb\n\nPredict the interactions for Dyb:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11454--Dyb"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG4563--Hk\n  Hk--Obp56d\n  Hk--spi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hk--santa-maria\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--eag\n  Hk--eag\n  Hk--qvr\n  Hk--qvr\n  eag--qvr\n  eag--qvr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hk--para\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13142, CG13171, MAGE, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG13142--CG13171\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--Pk17E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 4 proteins, 7 interactions\n\nNew protein to integrate: CG11672\n\nPredict the interactions for CG11672:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11672--CG13142"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17244, CG9754, Liprin-beta, Liprin-gamma, trio\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n  CG9754--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-beta--Liprin-gamma\n  Liprin-beta--trio\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta\n  Liprin-gamma--Liprin-gamma\n\nNETWORK SUMMARY: 5 proteins, 6 interactions\n\nNew protein to integrate: Liprin-alpha\n\nPredict the interactions for Liprin-alpha:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-alpha--Liprin-gamma\n  Liprin-alpha--trio\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-alpha--Liprin-alpha\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-gamma"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17826, CG34324, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG17826--CG34324\n  CG17826--Cpr64Ad\n  CG34324--Cpr64Ad\n  CG34324--Mst87F\n  CG34324--Mst98Ca\n  CG34324--Mst98Cb\n  CG34324--NimC3\n  CG34324--rev7\n  CG34324--sxc\n  rev7--rev7\n  rev7--rev7\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG9572\n\nPredict the interactions for CG9572:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG34324--CG9572\n  CG9572--Cpr64Ad"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry\n- Network density: approximately 0.36\n- Hub proteins (highly connected): La, CTPsyn\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry\n\nTWO-HYBRID INTERACTIONS:\n  CG33514--La\n  CG4896--La\n  CTPsyn--CTPsyn\n  Cdc27--La\n  GalNAc-T1--La\n  La--RpL13A\n  La--cpb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  La--Sema-1a\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Sema-1a--Sema-1a\n\nCO-FRACTIONATION INTERACTIONS:\n  Sema-1a--Sema-1a\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  Sema-1a--Sema-1a\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--La\n  CTPsyn--RpL13A\n  La--cry\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S\n\nTWO-HYBRID INTERACTIONS:\n  CG10472--CG18508\n  CG10472--CG2789\n  CG10472--CG33977\n  CG10472--CG42359\n  CG10472--CG8909\n  CG10472--PIG-C\n  CG10472--PIG-S\n  CG18508--CG18508\n  CG18508--CG33977\n  CG18508--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: BEAF-32, Eb1, GEFmeso, Tab2\n\nTWO-HYBRID INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Tab2--Tab2\n\nPCA INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n\nCO-FRACTIONATION INTERACTIONS:\n  BEAF-32--BEAF-32\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BEAF-32--BEAF-32\n\nNETWORK SUMMARY: 4 proteins, 16 interactions\n\nNew protein to integrate: Kebab\n\nPredict the interactions for Kebab:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  BEAF-32--Kebab\n  GEFmeso--Kebab\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kebab--Tab2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eb1--Kebab"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  CG11320--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr4\n  CG10824--dpr4\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr7\n  CG10824--dpr7\n  CG11320--dpr\n  CG11320--dpr\n  dpr3--dpr7\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr2\n  CG11320--dpr4\n  CG11320--dpr7\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  CG11320--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--CG11320\n  CG10824--CG11320\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr4\n  CG10824--dpr4\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG11320--dpr\n  CG11320--dpr\n  dpr3--dpr7\n  dpr3--dpr7\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr\n  CG11320--dpr2\n  CG11320--dpr3\n  CG11320--dpr4\n  CG11320--dpr5\n  CG11320--dpr7\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10189, CG7856, CG8078, Nha1\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--CG7856\n  CG10189--Nha1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10189--CG8078\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: stumps\n\nPredict the interactions for stumps:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10189--stumps\n  stumps--stumps\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stumps--stumps"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1\n- Network density: approximately 0.42\n- Hub proteins (highly connected): CG10465, Dref\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG10841\n  CG10465--CG15547\n  CG10465--CG9578\n  CG10465--Dref\n  CG10465--Mob4\n  CG10465--Snr1\n  CG9578--CG9578\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10465--Leash\n  Dref--Dref\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10139, CG17259, CG17765, Cnx99A, Pi3K68D, dsx, grp, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG17765--CG17765\n  CG17765--grp\n  CG17765--squ\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--CG17765\n  CG17259--Cnx99A\n  CG17259--Pi3K68D\n  CG17765--Cnx99A\n  CG17765--Pi3K68D\n  CG17765--dsx\n  Cnx99A--Pi3K68D\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nNETWORK SUMMARY: 8 proteins, 17 interactions\n\nNew protein to integrate: Glt\n\nPredict the interactions for Glt:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--Glt\n  CG17765--Glt\n  Cnx99A--Glt\n  Glt--Pi3K68D"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n\nTWO-HYBRID INTERACTIONS:\n  APOB--MTTP\n  P4HB--P4HB\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NF2--NF2\n  P4HB--P4HB\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  NF2--NF2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--MTTP\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  MTTP--P4HB\n  NF2--NF2\n  P4HB--P4HB\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--CUL3\n  APOB--TMPO\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--MTTP\n  CUL3--P4HB\n  CUL3--P4HB\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--SNW1\n  CUL3--TMPO\n  LRRC31--MTTP\n  LRRC31--PRKDC\n  LRRC31--TMPO\n  MTTP--NF2\n  MTTP--TMPO\n  NF2--TMPO\n  P4HB--TMPO\n  PRKDC--SNW1\n  PRKDC--TMPO\n  SNW1--SNW1\n  SNW1--TMPO\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  MTTP--SNW1\n\nPOSITIVE GENETIC INTERACTIONS:\n  CUL3--SPPL3\n  MTTP--SPPL3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  MTTP--PRKDC\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n\nNETWORK SUMMARY: 10 proteins, 56 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, por, wg\n\nTWO-HYBRID INTERACTIONS:\n  Cyp4p2--por\n  Nsf2--Nsf2\n  Vap-33B--por\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Wnt4--wg\n  nkd--wg\n  nkd--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nsf2--por\n  Nsf2--wg\n  nkd--por\n  nkd--wg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Wnt10--por\n  Wnt2--por\n  Wnt4--por\n  Wnt6--por\n  por--wg\n  por--wg\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10631, CG12391, CG9331, Sp1, fd19B, sima\n\nTWO-HYBRID INTERACTIONS:\n  CG10631--CG12391\n  CG12391--CG9331\n  CG12391--Sp1\n  CG12391--fd19B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12391--sima\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: Hr78\n\nPredict the interactions for Hr78:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12391--Hr78\n  Hr78--Sp1\n  Hr78--fd19B"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG42676\n  CG11164--CG42676\n  CG15631--CG42676\n  CG15631--CG5376\n  CG3548--CG3548\n  CG42676--CG5376\n  CG42676--Su(dx)\n  CG42676--prd\n  CG42676--slif\n  CG5376--CG5376\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3548--CG42676\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Octbeta1R, Octbeta2R, dm, rad\n- Network density: approximately 0.67\n- Hub proteins (highly connected): Octbeta2R, Octbeta1R\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Octbeta1R, Octbeta2R, dm, rad\n\nTWO-HYBRID INTERACTIONS:\n  Octbeta2R--dm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Octbeta1R--Octbeta2R\n  Octbeta1R--Octbeta2R\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Octbeta2R--rad\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C1GalTA, CG11329, CG13142, MAGE, mei-41, spn-A, tefu\n\nTWO-HYBRID INTERACTIONS:\n  C1GalTA--MAGE\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  MAGE--mei-41\n  MAGE--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  MAGE--spn-A\n  mei-41--tefu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 7 proteins, 19 interactions\n\nNew protein to integrate: CG15136\n\nPredict the interactions for CG15136:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15136--MAGE"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11885, CG5059, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n\nTWO-HYBRID INTERACTIONS:\n  CG11885--Sobp\n  CG5059--CG5059\n  CG5059--Sobp\n  Nplp2--Sobp\n  Sobp--rdo\n  Sobp--so\n  Sobp--so\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpgrip1l--Sobp\n\nCO-FRACTIONATION INTERACTIONS:\n  Rpgrip1l--Sobp\n\nNAN INTERACTIONS:\n  Ser8--Sobp\n\nNETWORK SUMMARY: 8 proteins, 10 interactions\n\nNew protein to integrate: Ndn\n\nPredict the interactions for Ndn:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Ndn--Ndn\n  Ndn--Sobp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10139, Hug, PK2-R1, PK2-R2, TrpA1\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Hug--PK2-R1\n  Hug--PK2-R2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hug--TrpA1\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Hug, PK2-R1, PK2-R2, TrpA1\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--Hug\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Hug--PK2-R1\n  Hug--PK2-R2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hug--TrpA1\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept\n- Network density: approximately 0.49\n- Hub proteins (highly connected): CG5973, dom\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n  CG5973--phyl\n  phyl--phyl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1620--CG5973\n  CG1620--CG8745\n  CG1620--MrgBP\n  CG1620--Rpd3\n  CG1620--dom\n  CG5973--CG8745\n  CG5973--MrgBP\n  CG5973--Rpd3\n  CG5973--YL-1\n  CG5973--dom\n  CG5973--rept\n  CG8745--MrgBP\n  CG8745--Rpd3\n  CG8745--dom\n  CG8745--rept\n  MrgBP--dom\n  YL-1--dom\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Rpd3--dom\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dom--rept\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--eIF2B-beta\n  CG11876--CG11876\n  CG11876--eIF2B-beta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-beta--inv\n  eIF2B-beta--nop5\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--eIF2B-beta\n  CG11876--CG11876\n  CG11876--eIF2B-beta\n  CG15169--eIF2B-beta\n  CG15478--eIF2B-beta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-beta--inv\n  eIF2B-beta--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17029, ImpL3, Vps28\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG17029, ImpL3\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17029, ImpL3, Vps28\n\nTWO-HYBRID INTERACTIONS:\n  CG17029--ImpL3\n  CG17029--ImpL3\n  CG17029--Vps28\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10195, CG18012, CG3107, CG7025, Nop60B\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG7025, CG10195\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10195, CG18012, CG3107, CG7025, Nop60B\n\nTWO-HYBRID INTERACTIONS:\n  CG10195--CG7025\n  CG18012--CG7025\n  CG3107--CG7025\n  CG7025--Nop60B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n\nTWO-HYBRID INTERACTIONS:\n  AGTPBP1--PPFIA4\n  ERC2--PPFIA4\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  NCOA2--PPFIA4\n  PLEKHA4--PLEKHA4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  NCOA2--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  LMNA--LMNA\n  PRC1--PRC1\n  PRC1--PRC1\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GIT1--PLEKHA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PLEKHA4\n  LMNA--PRC1\n  PLEKHA4--PPFIA4\n  PPFIA4--PRC1\n  PRC1--PRC1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nFRET INTERACTIONS:\n  DNAJC5--PPFIA4\n\nCO-PURIFICATION INTERACTIONS:\n  PRC1--PRC1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PPFIA4\n\nNETWORK SUMMARY: 9 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima\n\nTWO-HYBRID INTERACTIONS:\n  CG10631--CG12391\n  CG12391--CG9331\n  CG12391--Hr78\n  CG12391--Sp1\n  CG12391--fd19B\n  Hr78--Sp1\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10631, CG12391, CG9331, Hr78, Sp1, fd19B, sima\n\nTWO-HYBRID INTERACTIONS:\n  CG10631--CG12391\n  CG12391--CG9331\n  CG12391--Hr78\n  CG12391--Sp1\n  CG12391--fd19B\n  Hr78--Sp1\n  Hr78--fd19B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12391--sima\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10324, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG12877\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6340\n  CG10324--CG6843\n  CG10324--SRm160\n  CG10324--l(2)37Cb\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG5808\n  CG31211--CG6843\n  CG31211--SRm160\n  CG5808--CG6843\n  CG6340--CG6843\n  CG6843--CG6843\n  CG6843--SRm160\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nNETWORK SUMMARY: 9 proteins, 28 interactions\n\nNew protein to integrate: CG11266\n\nPredict the interactions for CG11266:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10324--CG11266\n  CG11266--CG11266\n  CG11266--CG31211\n  CG11266--CG6340\n  CG11266--CG6843"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG13133, CG13667\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n\nTWO-HYBRID INTERACTIONS:\n  CG13133--CG13133\n  CG13133--CG13667\n  CG13133--CG13667\n  CG13133--CG14317\n  CG13133--CG34198\n  CG13133--Droj2\n  CG13133--Mst84Db\n  CG13133--Mst84Dd\n  CG13133--Mst87F\n  CG13133--Rca1\n  CG13133--metl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11286--fws\n  CG31365--CG31365\n  CG31365--fws\n  CG5466--fws\n  HLH3B--fws\n  Leash--Leash\n  Leash--fws\n  Mad--Mad\n  Mad--fws\n  RtGEF--fws\n  fws--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mad--Mad\n  Mad--Mad\n  fws--rti\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Mad--Mad\n\nCO-FRACTIONATION INTERACTIONS:\n  Mad--Mad\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 17 interactions\n\nNew protein to integrate: gukh\n\nPredict the interactions for gukh:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  fws--gukh"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13326, Spc105R, lark\n\nTWO-HYBRID INTERACTIONS:\n  CG13326--Spc105R\n  CG13326--lark\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: rti\n\nPredict the interactions for rti:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG13326--rti\n  lark--rti\n  rti--rti"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Klp3A, feo, kek3, neb, pav, sip2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Klp3A--feo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  feo--neb\n  feo--pav\n  feo--sip2\n  neb--pav\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  feo--sip2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  feo--sip2\n\nTWO-HYBRID INTERACTIONS:\n  feo--sip2\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Klp3A, feo, kek3, neb, pav, sip2\n\nTWO-HYBRID INTERACTIONS:\n  feo--kek3\n  feo--sip2\n  feo--sip2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Klp3A--feo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Klp3A--feo\n  feo--neb\n  feo--pav\n  feo--sip2\n  neb--pav\n  neb--pav\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  feo--sip2\n  feo--sip2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  feo--sip2\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n\nNETWORK SUMMARY: 6 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11249, CG11380, CG3942, robl62A, sol\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG11249, CG3942\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11249, CG11380, CG3942, robl62A, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG11249--CG11380\n  CG11249--CG3942\n  CG11249--robl62A\n  CG11249--sol\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO1, CG10559, CG6707, cold, stops\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--cold\n  cold--stops\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--cold\n  AGO1--cold\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10559, CG6707, cold, stops\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--cold\n  CG6707--cold\n  cold--stops\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--cold\n  AGO1--cold\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rux--swm\n  rux--swm\n  smo--swm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--smo\n  hh--smo\n  hh--swm\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  FucTA--swm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ZC3H3--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm\n\nTWO-HYBRID INTERACTIONS:\n  Pabp2--Pabp2\n  Pabp2--swm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rux--swm\n  rux--swm\n  smo--swm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  cnk--swm\n  hh--smo\n  hh--smo\n  hh--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n  hh--hh\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  FucTA--swm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--l(3)L1231\n  CG14062--l(3)L1231\n  CR18854--l(3)L1231\n  M1BP--M1BP\n  M1BP--l(3)L1231\n  Mer--Mer\n  Mer--l(3)L1231\n  RpS21--l(3)L1231\n  Snr1--l(3)L1231\n  Sry-alpha--l(3)L1231\n  betaggt-II--l(3)L1231\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mer--Snr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mer--Mer\n  Mer--Mer\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10164, CG4335, CG7488, Traf6, vir-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG7488\n  CG4335--CG4335\n  CG7488--Traf6\n  CG7488--vir-1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG4335, CG7488, Traf6, vir-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG7488\n  CG4335--CG4335\n  CG4335--CG7488\n  CG4335--CG7488\n  CG7488--Traf6\n  CG7488--vir-1\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 5 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6220, CG8745, CG8997, Traf6, koi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6220--CG8745\n  CG6220--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  koi--koi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6220--rti\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6220, CG8745, CG8997, Traf6, koi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6220--CG8745\n  CG6220--CG8997\n  CG6220--Traf6\n  CG6220--koi\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  koi--koi\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6220--rti\n  rti--rti\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor\n\nTWO-HYBRID INTERACTIONS:\n  Atg8b--CG11723\n  Atg8b--CG12576\n  Atg8b--DOR\n  Atg8b--Tbc1d15-17\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Atg8b--dom\n  CG11723--dom\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg8b--DOR\n  Atg8b--dor\n  Atg8b--dor\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor\n\nTWO-HYBRID INTERACTIONS:\n  Atg4a--Atg8b\n  Atg8b--CG11723\n  Atg8b--CG12576\n  Atg8b--CG13204\n  Atg8b--DOR\n  Atg8b--DOR\n  Atg8b--Tbc1d15-17\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Atg8b--dom\n  CG11723--dom\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg8b--DOR\n  Atg8b--dor\n  Atg8b--dor\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10208, CG7564, Fadd, Sxl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, Fadd, Sxl\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG10208--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10208--Fadd\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 4 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO1, CG10559, CG6707, stops\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: cold\n\nPredict the interactions for cold:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10559--cold\n  CG6707--cold\n  cold--stops\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--cold\n  AGO1--cold"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATPsyn-beta, CG10340, CG17230\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--CG10340\n  CG10340--CG17230\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--CG10340\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: LIMK1\n\nPredict the interactions for LIMK1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10340--LIMK1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LIMK1--LIMK1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Prx2540-2, Tango2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 7 proteins, 3 interactions\n\nNew protein to integrate: Eip55E\n\nPredict the interactions for Eip55E:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG15067--Eip55E\n  Dcp1--Eip55E\n  Eip55E--Tango2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG34133--Eip55E\n  Eip55E--Prx2540-2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcp-1--Eip55E\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcp-1--Eip55E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17018, CG31064, CG7156, Prosalpha5, ldbr\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--CG7156\n  CG31064--CG31064\n  CG31064--CG7156\n  CG7156--Prosalpha5\n  CG7156--Prosalpha5\n  CG7156--ldbr\n\nNETWORK SUMMARY: 5 proteins, 6 interactions\n\nNew protein to integrate: CG3309\n\nPredict the interactions for CG3309:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3309--CG7156"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004\n- Network density: approximately 0.62\n- Hub proteins (highly connected): gig, Tsc1\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG2972--CG7126\n  CG2972--exd\n  CG2972--l(1)G0004\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2972--Tsc1\n  CG2972--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n\nTWO-HYBRID INTERACTIONS:\n  CG13510--CG15293\n  CG15293--CG18067\n  CG15293--CG32425\n  CG15293--CG40045\n  CG15293--PlexA\n  CG15293--RpS20\n  CG15293--Su(var)205\n  CG15293--l(2)05714\n  CG15293--shg\n  RpS20--l(2)05714\n  l(2)05714--l(2)05714\n  l(2)05714--l(2)05714\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl\n\nTWO-HYBRID INTERACTIONS:\n  Hsp68--Zmynd10\n  Rtnl1--Rtnl1\n  Zmynd10--tilB\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Zmynd10\n  Rtnl1--Zmynd10\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl\n\nTWO-HYBRID INTERACTIONS:\n  Hsp68--Zmynd10\n  Rtnl1--Rtnl1\n  Zmynd10--tilB\n  Zmynd10--yl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Zmynd10\n  Rtnl1--Zmynd10\n\nCO-FRACTIONATION INTERACTIONS:\n  Nutm1--Zmynd10\n  Xkrx--Zmynd10\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGTPBP1, DNAJC5, ERC2, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n\nTWO-HYBRID INTERACTIONS:\n  AGTPBP1--PPFIA4\n  ERC2--PPFIA4\n  ERC2--PPFIA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  NCOA2--PPFIA4\n  PLEKHA4--PLEKHA4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA4\n  NCOA2--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LMNA--LMNA\n  PRC1--PRC1\n  PRC1--PRC1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PLEKHA4\n  LMNA--PRC1\n  PLEKHA4--PPFIA4\n  PPFIA4--PRC1\n  PRC1--PRC1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nFRET INTERACTIONS:\n  DNAJC5--PPFIA4\n\nCO-PURIFICATION INTERACTIONS:\n  PRC1--PRC1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PPFIA4\n\nNETWORK SUMMARY: 8 proteins, 28 interactions\n\nNew protein to integrate: GIT1\n\nPredict the interactions for GIT1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  GIT1--GIT1\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GIT1--GIT1\n  GIT1--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GIT1--PLEKHA4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG10252--CG3792\n  CG10252--CG44251\n  CG10252--D1\n  CG10252--Zyx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10252--CG7770\n  CG10252--CG8292\n  CG10252--mgr\n  CG10252--rti\n  CG7770--mgr\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP\n\nTWO-HYBRID INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIbeta--CkIIbeta\n  Mfap1--Prp38\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Mfap1\n  Cdc5--Prp38\n  CkIIalpha--CkIIbeta\n  CkIIalpha--Mfap1\n  CkIIalpha--Prp38\n  CkIIbeta--Mfap1\n  CkIIbeta--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp8\n  Mfap1--alphaCOP\n  Mfap1--betaCOP\n  Prp38--Prp8\n  Prp38--alphaCOP\n  Prp38--betaCOP\n  alphaCOP--betaCOP\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CkIIalpha--CkIIbeta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  Mfap1--Prp38\n  Mfap1--Prp38\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CkIIalpha--CkIIalpha\n\nNETWORK SUMMARY: 8 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, PLXNB3, RNF123, SPOCK2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGEF11--PLXNB3\n  ARHGEF11--PLXNB3\n  BTBD3--BTBD3\n  BTBD3--PLXNB3\n  CUL7--PLXNB3\n  DSCR9--PLXNB3\n  DSCR9--SPOCK2\n  HSPA13--PLXNB3\n  MAGI2--PLXNB3\n  PLXNB3--SPOCK2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARHGEF11--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL7--CUL7\n  CUL7--CUL7\n  CUL7--CUL7\n  PLXNB3--RNF123\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: MAGI3\n\nPredict the interactions for MAGI3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  MAGI3--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MAGI3--RNF123"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10809, Nup214, Nup58, l(3)05822\n\nTWO-HYBRID INTERACTIONS:\n  CG10809--Nup214\n  CG10809--Nup58\n  CG10809--l(3)05822\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: Cip4\n\nPredict the interactions for Cip4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10809--Cip4\n  CG10809--Cip4\n  Cip4--Cip4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n\nTWO-HYBRID INTERACTIONS:\n  CG4511--CG8507\n  CG4511--MED22\n  CG4511--Pka-R1\n  CG4511--Pka-R1\n  CG4511--ssp3\n  Pka-R1--Pka-R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pka-R1--Pka-R1\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n\nTWO-HYBRID INTERACTIONS:\n  CG10510--CG4511\n  CG4511--CG8507\n  CG4511--Cpr35B\n  CG4511--MED22\n  CG4511--Pka-R1\n  CG4511--Pka-R1\n  CG4511--ssp3\n  CG4511--sta\n  Pka-R1--Pka-R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pka-R1--Pka-R1\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG4563, Hk, Obp56d, para, qvr, santa-maria, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG4563--Hk\n  Hk--Obp56d\n  Hk--spi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hk--santa-maria\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hk--para\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--qvr\n  Hk--qvr\n\nNETWORK SUMMARY: 7 proteins, 7 interactions\n\nNew protein to integrate: eag\n\nPredict the interactions for eag:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--eag\n  Hk--eag\n  eag--qvr\n  eag--qvr"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n- Network density: approximately 0.38\n- Hub proteins (highly connected): mtDNA-helicase, Iap2\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  Blm--mtDNA-helicase\n  CG10721--mtDNA-helicase\n  Mlh1--mtDNA-helicase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3262--Iap2\n  CG3262--mtDNA-helicase\n  Coprox--Iap2\n  Coprox--mtDNA-helicase\n  EndoG--Iap2\n  EndoG--Su(P)\n  EndoG--mtDNA-helicase\n  Iap2--Iap2\n  Iap2--Mpcp\n  Iap2--Su(P)\n  Iap2--mtDNA-helicase\n  Mpcp--mtDNA-helicase\n  Su(P)--mtDNA-helicase\n\nCO-FRACTIONATION INTERACTIONS:\n  EndoG--EndoG\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, Zasp67, dgt4\n\nTWO-HYBRID INTERACTIONS:\n  A16--Zasp67\n  Indy--Zasp67\n  PHDP--Zasp67\n  RASSF8--RASSF8\n  RASSF8--Zasp66\n  RASSF8--Zasp67\n  RpS3--Zasp52\n  RpS3--Zasp67\n  Sirup--Zasp67\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp52--Zasp67\n  Zasp67--dgt4\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n  Zasp66--Zasp67\n  Zasp66--Zasp67\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Zasp52--Zasp66\n\nPCA INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Zasp52--Zasp52\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n- Network density: approximately 0.42\n- Hub proteins (highly connected): CG5516, Tm1\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n\nTWO-HYBRID INTERACTIONS:\n  Adf1--Adf1\n  Adf1--CG5516\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG5516\n  CG14818--CG5516\n  CG14818--Nup54\n  CG5516--Lim1\n  CG5516--Nup54\n  CG5516--Tm1\n  CG5516--dgrn\n  CG5516--l(2)06496\n  Tm1--Tm1\n  Tm1--dgrn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5516--Rheb\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Adf1--Adf1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rheb--Rheb\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra\n- Network density: approximately 0.33\n- Hub proteins (highly connected): dsx, Cas\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG6707--Cas\n  Cas--Cpn\n  Cas--Hakai\n  Cas--Pen\n  Cas--Vsx2\n  Cas--dsx\n  Cas--nocte\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cas--scra\n  Pen--scra\n  fra--fra\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cas--fra\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Jupiter, Mink, Tsc1, foxo, mad2, skpB"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jupiter, Mink, Tsc1, foxo, mad2, skpB\n\nTWO-HYBRID INTERACTIONS:\n  Jupiter--Mink\n  Mink--mad2\n  Mink--skpB\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--Tsc1\n  Mink--foxo\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--CG13397\n  CG1092--CG9372\n  CG1092--CG9947\n  CG1092--Cnx99A\n  CG1092--Crc\n  CG1092--Fer1HCH\n  CG1092--Gp93\n  CG1092--PH4alphaEFB\n  CG1092--Pdi\n  CG13397--CG9372\n  CG13397--Cnx99A\n  CG13397--Fer1HCH\n  CG9947--Cnx99A\n  CG9947--Fer1HCH\n  CG9947--Gp93\n  Cnx99A--Gp93\n  Crc--Gp93\n  Crc--Pdi\n  Fer1HCH--Gp93\n  Fer1HCH--PH4alphaEFB\n  Fer1HCH--Pdi\n  Gp93--Pdi\n  PH4alphaEFB--Pdi\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari\n- Network density: approximately 0.43\n- Hub proteins (highly connected): CG11125, ctp\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13868, CG33970, Cdlc2, ctp, m-cup, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG11125--CG33970\n  CG11125--Cdlc2\n  CG11125--Cdlc2\n  CG11125--ctp\n  CG11125--m-cup\n  CG11125--vari\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG3303\n  CG1142--CG42797\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1142--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG14490\n  CG1142--CG3303\n  CG1142--CG42797\n  CG1142--CG8079\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1142--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CAP--CG10440\n  CG10440--CG10440\n  CG10440--CG14074\n  CG10440--TfAP-2\n  CG10440--lwr\n  CG14074--lwr\n  PICK1--PICK1\n  lwr--lwr\n  lwr--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n  PICK1--PICK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10440--CG2611\n  CG10440--Doc3\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CAP--CG10440\n  CG10440--CG10440\n  CG10440--CG14074\n  CG10440--CG32354\n  CG10440--PICK1\n  CG10440--TfAP-2\n  CG10440--lwr\n  CG10440--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  PICK1--PICK1\n  lwr--lwr\n  lwr--lwr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10440--TfAP-2\n  CG10440--TfAP-2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n  PICK1--PICK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10440--CG2611\n  CG10440--Doc3\n\nNETWORK SUMMARY: 9 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11523, CG6428, Marf, NC2alpha, RpS18\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG6428, CG11523\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG6428, Marf, NC2alpha, RpS18\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG6428\n  CG6428--Marf\n  CG6428--NC2alpha\n  CG6428--RpS18\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Lcp2, Rcd7, jbug, rb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Lcp2, Rcd7, jbug, rb\n\nTWO-HYBRID INTERACTIONS:\n  Lcp2--Rcd7\n  Rcd7--jbug\n  Rcd7--rb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10222, CG32683, CG3704, pbl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG32683, CG3704, pbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG32683\n  CG10222--CG3704\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10222--pbl\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5062, CG8128, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n\nTWO-HYBRID INTERACTIONS:\n  CG5062--IntS10\n  CG8128--IntS10\n  IntS10--Nek2\n  IntS10--Orc6\n  IntS10--PGAP5\n  IntS10--dap\n  IntS10--png\n  IntS10--slmo\n  Nek2--Nek2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dap--png\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  png--png\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Orc6--Orc6\n\nCO-FRACTIONATION INTERACTIONS:\n  Orc6--Orc6\n\nFRET INTERACTIONS:\n  Orc6--Orc6\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Orc6--Orc6\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: Cul2\n\nPredict the interactions for Cul2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cul2--IntS10\n  Cul2--dap"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33276, CG6337, Cp1, CtsB1, Swim, cer, cpb\n\nTWO-HYBRID INTERACTIONS:\n  CG6337--cer\n  CtsB1--cer\n  CtsB1--cer\n  Swim--cer\n  cer--cpb\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33276--cer\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Cp1--cer\n  CtsB1--cer\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou\n- Network density: approximately 1.05\n- Hub proteins (highly connected): PCNA, MEP-1\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--lig3\n  CG8290--lig3\n  Cul2--MEP-1\n  Cul2--PCNA\n  Cul2--lig3\n  MEP-1--PCNA\n  MEP-1--lig3\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--lig3\n  lig3--tou\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10366, CG10494, CG6693, VhaAC39-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10366--CG10494\n  CG10366--VhaAC39-1\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10366, CG10494, CG6693, VhaAC39-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10366--CG10494\n  CG10366--VhaAC39-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10366--CG6693\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11407, CG16817, IntS4, asl\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n  asl--asl\n  asl--asl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--CG16817\n  CG11407--asl\n  CG16817--asl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  asl--asl\n  asl--asl\n\nCO-FRACTIONATION INTERACTIONS:\n  asl--asl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  asl--asl\n\nNETWORK SUMMARY: 4 proteins, 10 interactions\n\nNew protein to integrate: abs\n\nPredict the interactions for abs:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--abs\n  abs--asl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATPsyn-beta, CG10340, CG17230, LIMK1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10340, CG17230, LIMK1\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--CG10340\n  CG10340--CG17230\n  CG10340--LIMK1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LIMK1--LIMK1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--CG10340\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG15865, CG11380\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n\nTWO-HYBRID INTERACTIONS:\n  CG11138--CG15865\n  CG11380--CG13067\n  CG11380--CG15865\n  CG11380--TwdlE\n  CG13067--CG15865\n  CG15865--CG42565\n  CG15865--CG8907\n  CG15865--CG8927\n  CG15865--Cpr72Ea\n  CG15865--Hakai\n  CG15865--TwdlE\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO1--CG11982\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO1--CG11982\n  CG11982--CG7546\n\nTWO-HYBRID INTERACTIONS:\n  CG11982--CG3473\n  CG11982--CG7220\n  CG11982--UbcD2\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff\n\nTWO-HYBRID INTERACTIONS:\n  CG10918--CG11982\n  CG11982--CG3473\n  CG11982--CG7220\n  CG11982--UbcD2\n  CG11982--ben\n  CG11982--eff\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO1--CG11982\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO1--CG11982\n  CG11982--CG7546\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5147, Sin, Sxl, ftz\n\nTWO-HYBRID INTERACTIONS:\n  CG5147--Sin\n  Sin--Sxl\n  Sin--ftz\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sin--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 4 proteins, 12 interactions\n\nNew protein to integrate: Crk\n\nPredict the interactions for Crk:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Crk--Sin"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG17003\n  CG13197--CG17003\n  CG1344--CG17003\n  CG17003--CG5445\n  CG17003--CG5447\n  CG17003--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2909, CG30417, CG6770, CG7229, amos, fs(1)h, inv, rdx, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2909--CG30417\n  CG30417--CG6770\n  CG30417--CG7229\n  CG30417--CG7229\n  CG30417--amos\n  CG30417--fs(1)h\n  CG30417--inv\n  CG30417--rdx\n  CG30417--sa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG14647\n\nPredict the interactions for CG14647:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14647--CG14647\n  CG14647--CG30417"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai\n\nTWO-HYBRID INTERACTIONS:\n  CG11474--CG5149\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Atg8a--CG11474\n  Atg8a--Su(var)205\n  CG11474--CG17746\n  CG11474--CG7737\n  CG11474--Su(var)205\n  CG11474--stai\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12728, CG32756, CG4218, dgrn\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG4218, dgrn\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12728, CG32756, CG4218, dgrn\n\nTWO-HYBRID INTERACTIONS:\n  CG12728--CG4218\n  CG32756--CG4218\n  CG4218--dgrn\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10298, hdm, mei-217, rec, spn-A\n- Network density: approximately 0.60\n- Hub proteins (highly connected): rec, spn-A\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, hdm, mei-217, rec, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--rec\n  spn-A--spn-A\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hdm--rec\n  rec--spn-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-217--rec\n  mei-217--rec\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Acp53Ea--CG17292\n  CG12393--CG17292\n  CG17292--CG31792\n  CG17292--CG8449\n  CG17292--CG8449\n  CG17292--D19B\n  CG17292--Not10\n  CG17292--rux\n  CG17292--ttk\n  D19B--D19B\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Not10--Not10\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nPCA INTERACTIONS:\n  D19B--D19B\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--CG13397\n  CG1092--CG9372\n  CG1092--Cnx99A\n  CG1092--Crc\n  CG1092--Fer1HCH\n  CG1092--PH4alphaEFB\n  CG1092--Pdi\n  CG13397--CG9372\n  CG13397--Cnx99A\n  CG13397--Fer1HCH\n  CG9947--Gp93\n  Crc--Gp93\n  Crc--Pdi\n  Fer1HCH--Gp93\n  Fer1HCH--Pdi\n  PH4alphaEFB--Pdi\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB, Pdi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--CG13397\n  CG1092--CG9372\n  CG1092--CG9947\n  CG1092--Cnx99A\n  CG1092--Crc\n  CG1092--Fer1HCH\n  CG1092--Gp93\n  CG1092--PH4alphaEFB\n  CG1092--Pdi\n  CG13397--CG9372\n  CG13397--Cnx99A\n  CG13397--Fer1HCH\n  CG9947--Cnx99A\n  CG9947--Fer1HCH\n  CG9947--Gp93\n  Cnx99A--Gp93\n  Crc--Gp93\n  Crc--Pdi\n  Fer1HCH--Gp93\n  Fer1HCH--PH4alphaEFB\n  Fer1HCH--Pdi\n  Gp93--Pdi\n  PH4alphaEFB--Pdi\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arp1, CG13741, alpha4GT1, mahj, ms(3)76Ca\n\nNETWORK SUMMARY: 5 proteins, 0 interactions\n\nNew protein to integrate: CG4983\n\nPredict the interactions for CG4983:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Arp1--CG4983\n  CG13741--CG4983\n  CG4983--mahj\n  CG4983--ms(3)76Ca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4983--alpha4GT1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n- Network density: approximately 1.24\n- Hub proteins (highly connected): CUL3, TMPO\n- Total interactions: approximately 56"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n\nTWO-HYBRID INTERACTIONS:\n  APOB--MTTP\n  P4HB--P4HB\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NF2--NF2\n  P4HB--P4HB\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  NF2--NF2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--MTTP\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  MTTP--P4HB\n  NF2--NF2\n  P4HB--P4HB\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--CUL3\n  APOB--TMPO\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--MTTP\n  CUL3--P4HB\n  CUL3--P4HB\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--SNW1\n  CUL3--TMPO\n  LRRC31--MTTP\n  LRRC31--PRKDC\n  LRRC31--TMPO\n  MTTP--NF2\n  MTTP--TMPO\n  NF2--TMPO\n  P4HB--TMPO\n  PRKDC--SNW1\n  PRKDC--TMPO\n  SNW1--SNW1\n  SNW1--TMPO\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  MTTP--SNW1\n\nPOSITIVE GENETIC INTERACTIONS:\n  CUL3--SPPL3\n  MTTP--SPPL3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  MTTP--PRKDC\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n\nNETWORK SUMMARY: 10 proteins, 56 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11382, CG1598, CG3225, CG43129, CG7264\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG11382--CG3225\n  CG11382--CG43129\n  CG11382--CG7264\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: CG11350\n\nPredict the interactions for CG11350:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11350--CG11382"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry\n\nTWO-HYBRID INTERACTIONS:\n  CG33514--La\n  CG4896--La\n  CTPsyn--CTPsyn\n  Cdc27--La\n  GalNAc-T1--La\n  La--RpL13A\n  La--cpb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  La--Sema-1a\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Sema-1a--Sema-1a\n\nCO-FRACTIONATION INTERACTIONS:\n  Sema-1a--Sema-1a\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  Sema-1a--Sema-1a\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--La\n  CTPsyn--RpL13A\n  La--cry\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13326, Spc105R, lark, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG13326--Spc105R\n  CG13326--lark\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  lark--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13326, Spc105R, lark, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG13326--Spc105R\n  CG13326--lark\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13326--rti\n  lark--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG10053--CG15631\n  CG10053--Pk17E\n  Clamp--Clamp\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG10053--CG15631\n  CG10053--Clamp\n  CG10053--HLH4C\n  CG10053--Pk17E\n  Clamp--Clamp\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11407, CG16817, IntS4, abs, asl\n- Network density: approximately 1.20\n- Hub proteins (highly connected): asl, CG11407\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, CG16817, IntS4, abs, asl\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n  asl--asl\n  asl--asl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11407--CG16817\n  CG11407--abs\n  CG11407--asl\n  CG16817--asl\n  abs--asl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  asl--asl\n  asl--asl\n\nCO-FRACTIONATION INTERACTIONS:\n  asl--asl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  asl--asl\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG15717--CG8525\n  CG7675--W\n  CG8003--Corp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--CG15717\n  AnxB10--CG7675\n  AnxB10--CG8525\n  AnxB10--Corp\n  CG15717--CG7675\n  CG15717--CG8525\n  CG15717--Corp\n  CG7675--CG8525\n  CG7675--Corp\n  CG8525--Corp\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Corp--W\n  Corp--p53\n  Corp--rpr\n  W--p53\n  W--p53\n  W--p53\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Corp--p53\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Corp--p53\n  Corp--p53\n  W--rpr\n  W--rpr\n  p53--p53\n  p53--p53\n  p53--p53\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 9 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10426, CG3309, CG7156, Nha1, vret\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG3309--CG7156\n  CG3309--Nha1\n  CG3309--vret\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: slgA\n\nPredict the interactions for slgA:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3309--slgA"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3499, CG4335, Tig, ci, pgant3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3499, CG4335, Tig, ci, pgant3\n\nTWO-HYBRID INTERACTIONS:\n  CG3499--Tig\n  CG4335--CG4335\n  CG4335--Tig\n  Tig--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Tig--pgant3\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10585, CG10949, CG7206, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--GlyS\n  CG7206--Zpr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG7206\n  CG10585--Cct2\n  CG10949--CG7206\n  CG10949--Cct2\n  CG7206--Cct2\n  CG7206--Lst8\n  CG7206--MRG15\n  CG7206--Syp\n  Cct2--Lst8\n  Cct2--MRG15\n  Lst8--MRG15\n  Lst8--Syp\n  MRG15--Syp\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: CG9170\n\nPredict the interactions for CG9170:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7206--CG9170"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NF2--NF2\n  P4HB--P4HB\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  NF2--NF2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  MTTP--P4HB\n  NF2--NF2\n  P4HB--P4HB\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--MTTP\n  CUL3--P4HB\n  CUL3--P4HB\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--SNW1\n  CUL3--TMPO\n  LRRC31--MTTP\n  LRRC31--PRKDC\n  LRRC31--TMPO\n  MTTP--NF2\n  MTTP--TMPO\n  NF2--TMPO\n  P4HB--TMPO\n  PRKDC--SNW1\n  PRKDC--TMPO\n  SNW1--SNW1\n  SNW1--TMPO\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nTWO-HYBRID INTERACTIONS:\n  P4HB--P4HB\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  MTTP--SNW1\n\nPOSITIVE GENETIC INTERACTIONS:\n  CUL3--SPPL3\n  MTTP--SPPL3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  MTTP--PRKDC\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n\nNETWORK SUMMARY: 9 proteins, 51 interactions\n\nNew protein to integrate: APOB\n\nPredict the interactions for APOB:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  APOB--MTTP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--MTTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--CUL3\n  APOB--TMPO"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG12470--CG1461\n  CG1461--CG1461\n  CG1461--CG17325\n  CG1461--CG8907\n  CG1461--Elba3\n  CG1461--Snr1\n  CG1461--koi\n  CG1461--simj\n  koi--koi\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG15514\n  Best2--CG8833\n  Best2--PHDP\n  Best2--PebIII\n  CG15514--CG15514\n  CG15514--CG15514\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG15514\n  Best2--CG30428\n  Best2--CG8833\n  Best2--PHDP\n  Best2--PebIII\n  Best2--Sc2\n  CG15514--CG15514\n  CG15514--CG15514\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG15514--CG15514\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG11796--CG14105\n  CG11796--Cyp9f2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11796--Trp1\n  CG11796--beta4GalNAcTB\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10710, CG11796, CG14105, Cyp9f2, Trp1, aPKC, beta4GalNAcTB\n\nTWO-HYBRID INTERACTIONS:\n  CG10710--CG11796\n  CG11796--CG11796\n  CG11796--CG14105\n  CG11796--Cyp9f2\n  CG11796--aPKC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11796--Trp1\n  CG11796--beta4GalNAcTB\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10889, Lapsyn, Traf-like, dod, flw\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG10889, Lapsyn\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, Lapsyn, Traf-like, dod, flw\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG10889--Traf-like\n  CG10889--dod\n  CG10889--flw\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark\n\nTWO-HYBRID INTERACTIONS:\n  CG10651--Dok\n  CG11164--Dok\n  CG13928--Dok\n  Dok--Src42A\n  Dok--Src64B\n  Dok--ptc\n  Src64B--Src64B\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dok--puc\n  Dok--shark\n  Src42A--puc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Src42A--Src64B\n  Src42A--Src64B\n  Src42A--Src64B\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src42A--Src42A\n  Src42A--Src42A\n  Src42A--Src42A\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Dok--egl\n  Dok--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CBX1--CBX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  GRK5--GRK5\n\nTWO-HYBRID INTERACTIONS:\n  ABI3BP--CBX1\n  ABI3BP--GOT1\n  ABI3BP--GRB2\n  ABI3BP--MBNL1\n  GRB2--SPTBN1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  CBX1--CBX1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ABI3BP--SPDL1\n  GOT1--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRK5--SPTBN1\n  SPDL1--SPTBN1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ABI3BP--SPTBN1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ABI3BP--TIMP2\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  CBX1--CBX1\n  GRB2--GRB2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CBX1--CBX1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CBX1--CBX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  GRK5--GRK5\n\nTWO-HYBRID INTERACTIONS:\n  ABI3BP--CBX1\n  ABI3BP--FZD5\n  ABI3BP--GOT1\n  ABI3BP--GRB2\n  ABI3BP--MBNL1\n  GRB2--SPTBN1\n  SPDL1--SPDL1\n  SPTBN1--SPTBN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ABI3BP--GRK5\n  ABI3BP--SPDL1\n  GOT1--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRK5--SPTBN1\n  SPDL1--SPTBN1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ABI3BP--SPTBN1\n  SPTBN1--SPTBN1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ABI3BP--TIMP2\n  TIMP2--TIMP2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG14957, CG3309, CG5478, CG6443, Nha1, Nha2, cactin\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--Nha1\n  CG14957--Nha1\n  CG3309--Nha1\n  CG5478--Nha1\n  CG6443--Nha1\n  Nha1--cactin\n  Nha2--Nha2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nha1--Nha2\n  Nha1--Nha2\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  Ote--baf\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Df31\n  CG10214--Hsp60\n  CG10214--Ote\n  CG10214--Sod\n  CG10214--baf\n  CG10214--mtSSB\n  CG10214--p38b\n  CG10214--p38c\n  Df31--Hsp60\n  Df31--Sod\n  Sod--mtSSB\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx\n\nTWO-HYBRID INTERACTIONS:\n  CG13623--Lap1\n  CG2233--Lap1\n  CG9254--Lap1\n  Lap1--Not1\n  Lap1--RpL12\n  Lap1--ssx\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n\nTWO-HYBRID INTERACTIONS:\n  CG10510--CG4511\n  CG4511--CG8507\n  CG4511--Cpr35B\n  CG4511--MED22\n  CG4511--Pka-R1\n  CG4511--Pka-R1\n  CG4511--ssp3\n  CG4511--sta\n  Pka-R1--Pka-R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pka-R1--Pka-R1\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  GstD1--GstD1\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD7\n  GstD10--GstD2\n  GstD10--GstD7\n  GstD4--GstD6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD4\n  GstD1--GstD5\n  GstD1--GstD7\n  GstD1--GstD9\n  GstD1--rti\n  GstD10--GstD2\n  GstD10--GstD4\n  GstD10--GstD9\n  GstD2--GstD4\n  GstD2--GstD5\n  GstD2--GstD7\n  GstD2--GstD9\n  GstD4--GstD5\n  GstD4--GstD7\n  GstD4--GstD9\n  GstD4--rti\n  GstD5--GstD7\n  GstD5--GstD9\n  GstD7--GstD9\n  GstD9--rti\n  rti--rti\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GstD2--GstD2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  GstD2--GstD2\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG9825, Stat92E, dome, et, hop, os, tub\n- Network density: approximately 2.71\n- Hub proteins (highly connected): dome, Stat92E\n- Total interactions: approximately 57"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9825, Stat92E, dome, et, hop, os, tub\n\nTWO-HYBRID INTERACTIONS:\n  CG9825--et\n  et--tub\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--hop\n  dome--hop\n  dome--os\n  et--os\n  hop--os\n  hop--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  dome--hop\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  et--hop\n  hop--os\n  hop--os\n  hop--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--et\n  Stat92E--et\n  Stat92E--hop\n  dome--dome\n  dome--dome\n  dome--et\n  dome--et\n  dome--et\n  dome--hop\n  dome--hop\n  dome--os\n  dome--os\n  et--et\n  et--hop\n  et--hop\n\nPCA INTERACTIONS:\n  dome--dome\n  dome--dome\n  dome--dome\n\nNETWORK SUMMARY: 7 proteins, 57 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG15514\n  Best2--CG30428\n  Best2--CG8833\n  Best2--PHDP\n  Best2--PebIII\n  Best2--Sc2\n  CG15514--CG15514\n  CG15514--CG15514\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG15514--CG15514\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATP5B, NDUFA13, PDZK1, SMAP2\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: SLC22A12\n\nPredict the interactions for SLC22A12:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  PDZK1--SLC22A12\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PDZK1--SLC22A12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATP5B--SLC22A12\n  NDUFA13--SLC22A12\n  SLC22A12--SMAP2\n  SLC22A12--SMAP2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11722, Eip55E, MRG15, RtGEF, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG11722--MRG15\n  CG11722--RtGEF\n  CG11722--betaggt-II\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: Elba3\n\nPredict the interactions for Elba3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11722--Elba3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt\n\nTWO-HYBRID INTERACTIONS:\n  CG10144--Dcp1\n  CG10144--dor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--dor\n  Dcp1--Dcp1\n  car--dor\n  dor--lt\n\nCO-FRACTIONATION INTERACTIONS:\n  car--dor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10144--lt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--Rab5\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Rab5--Vps16A\n  Rab5--car\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 7 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt\n\nTWO-HYBRID INTERACTIONS:\n  CG10144--Dcp1\n  CG10144--dor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Dcp1--Dcp1\n  Vps16A--lt\n  car--dor\n  car--dor\n  car--lt\n  dor--lt\n\nCO-FRACTIONATION INTERACTIONS:\n  car--dor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10144--lt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--Rab5\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Rab5--Vps16A\n  Rab5--car\n  Rab5--dor\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10211, Vsx2, bcd, ci\n\nTWO-HYBRID INTERACTIONS:\n  CG10211--Vsx2\n  CG10211--bcd\n  CG10211--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: CG11786\n\nPredict the interactions for CG11786:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10211--CG11786"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11486, CG11498, bip2, rump\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG11498, rump\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11486, CG11498, bip2, rump\n\nTWO-HYBRID INTERACTIONS:\n  CG11486--CG11498\n  CG11498--bip2\n  CG11498--rump\n  rump--rump\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10585, CG10949, CG14315, CG6683, CG8560, Fer1HCH\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG10949--Fer1HCH\n  CG14315--CG6683\n  CG6683--CG6683\n  CG6683--Fer1HCH\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG6683\n  CG10949--CG6683\n  CG10949--CG8560\n  CG6683--CG8560\n\nNETWORK SUMMARY: 6 proteins, 11 interactions\n\nNew protein to integrate: CG8026\n\nPredict the interactions for CG8026:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG8026\n  CG10949--CG8026\n  CG6683--CG8026"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n- Network density: approximately 0.73\n- Hub proteins (highly connected): Tango9, Ost48\n- Total interactions: approximately 33"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n\nTWO-HYBRID INTERACTIONS:\n  DIP1--DIP1\n  DIP1--Tango9\n  Tango9--phr\n  phr--phr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CdsA\n  CG11857--Ost48\n  CG11857--OstDelta\n  CG11857--Sc2\n  CG11857--Sec61alpha\n  CG11857--Surf4\n  CG11857--Tango9\n  CdsA--Ost48\n  CdsA--OstDelta\n  CdsA--Sc2\n  CdsA--Sec61alpha\n  CdsA--Surf4\n  CdsA--Tango9\n  Ost48--OstDelta\n  Ost48--Sc2\n  Ost48--Sec61alpha\n  Ost48--Surf4\n  Ost48--Tango9\n  OstDelta--Sc2\n  OstDelta--Sec61alpha\n  OstDelta--Surf4\n  OstDelta--Tango9\n  Sc2--Sec61alpha\n  Sc2--Surf4\n  Sc2--Tango9\n  Sec61alpha--Surf4\n  Sec61alpha--Tango9\n  Surf4--Tango9\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10103, CG10732, CG6259, Flo1, Flo2, Sesn, Vps2, chico, fu\n\nTWO-HYBRID INTERACTIONS:\n  Flo1--Sesn\n  Flo1--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10103--CG10732\n  CG10103--CG6259\n  CG10103--Flo1\n  CG10103--Flo2\n  CG10103--Vps2\n  CG10103--chico\n  CG10732--CG6259\n  CG10732--Flo1\n  CG10732--Flo2\n  CG10732--chico\n  CG6259--Flo1\n  CG6259--Flo2\n  CG6259--Vps2\n  CG6259--chico\n  Flo1--Flo2\n  Flo1--Vps2\n  Flo1--chico\n  Flo2--chico\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10103--CG6259\n  Flo1--Flo2\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 9 proteins, 25 interactions\n\nNew protein to integrate: NimC1\n\nPredict the interactions for NimC1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Flo1--NimC1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13510, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n\nTWO-HYBRID INTERACTIONS:\n  RpS20--l(2)05714\n  l(2)05714--l(2)05714\n  l(2)05714--l(2)05714\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG15293\n\nPredict the interactions for CG15293:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13510--CG15293\n  CG15293--CG18067\n  CG15293--CG32425\n  CG15293--CG40045\n  CG15293--PlexA\n  CG15293--RpS20\n  CG15293--Su(var)205\n  CG15293--l(2)05714\n  CG15293--shg"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10426, CG3309, CG7156, Nha1, slgA, vret\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG3309, CG10426\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG3309, CG7156, Nha1, slgA, vret\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG3309--CG7156\n  CG3309--Nha1\n  CG3309--slgA\n  CG3309--vret\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8155--p47\n  CTPsyn--CTPsyn\n  Chi--p47\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TER94--p47\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  RpS27A--p47\n  TER94--TER94\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8155--zuc\n  CTPsyn--p47\n  p47--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8155--p47\n  CTPsyn--CTPsyn\n  Chi--p47\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TER94--p47\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n  RpS27A--TER94\n  RpS27A--p47\n  TER94--TER94\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8155--zuc\n  CTPsyn--CTPsyn\n  CTPsyn--p47\n  p47--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah\n\nTWO-HYBRID INTERACTIONS:\n  CG13083--sowah\n  CG34168--sowah\n  Oda--sowah\n  RhoGAP92B--sowah\n  Traf-like--sowah\n  Traf-like--sowah\n  par-6--sowah\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n\nTWO-HYBRID INTERACTIONS:\n  CG5375--slif\n  Src64B--Src64B\n  Src64B--slif\n  sav--slif\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Pten--slif\n  hppy--slif\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gcn2--slif\n  Pten--hppy\n  Pten--slif\n  hppy--slif\n\nFRET INTERACTIONS:\n  sav--sav\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Pten--Pten\n\nNETWORK SUMMARY: 7 proteins, 15 interactions\n\nNew protein to integrate: CG42676\n\nPredict the interactions for CG42676:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42676--slif"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CDHR2, RPS6KA2\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2\n\nTWO-HYBRID INTERACTIONS:\n  CDHR2--MAST2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDHR2--MAST2\n\nCO-LOCALIZATION INTERACTIONS:\n  CDHR2--MAST2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RPS6KA2--RPS6KA2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--FBXO2\n  CDHR2--HIP1R\n  CDHR2--LAMB1\n  CDHR2--NF1\n  CDHR2--RPS6KA2\n  CDHR2--SURF1\n  CDHR2--TBCD\n  CDHR2--TMTC2\n  FBXO2--LAMB1\n  RPS6KA2--RPS6KA2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG14011--CG44243\n  CG14011--CG9911\n  CG14011--Ef1beta\n  CG14011--RpS17\n  CG14011--cav\n  CG14011--rau\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG14011--CG44243\n  CG14011--CG7357\n  CG14011--CG7386\n  CG14011--CG9911\n  CG14011--Ef1beta\n  CG14011--RpS17\n  CG14011--cav\n  CG14011--eIF-4a\n  CG14011--rau\n  CG7386--CG7386\n  CG7386--rau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG1486--CG4116\n  CG17666--CG4116\n  CG4116--CG9572\n  CG4116--CIAPIN1\n  CG4116--P32\n  CG4116--P32\n  CG4116--SmD1\n  CG4116--fok\n  CG4116--gro\n  CG4116--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CIAPIN1--CIAPIN1\n  P32--P32\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  CIAPIN1--CIAPIN1\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12012, CG18336, CG4822, caps, mle"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12012, CG18336, CG4822, caps, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG18336--CG4822\n  CG4822--caps\n  CG4822--mle\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12012--CG4822\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mle--mle\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10565, CG11852, CG17819, CG8508\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG11852, CG10565\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG11852, CG17819, CG8508\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG11852\n  CG11852--CG8508\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11852--CG17819\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n- Network density: approximately 0.38\n- Hub proteins (highly connected): CG7206, Cct2\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG7206, CG9170, Cct2, GlyS, Lst8, MRG15, Syp, Zpr1\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG7206--GlyS\n  CG7206--Zpr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG7206\n  CG10585--Cct2\n  CG10949--CG7206\n  CG10949--Cct2\n  CG7206--Cct2\n  CG7206--Lst8\n  CG7206--MRG15\n  CG7206--Syp\n  Cct2--Lst8\n  Cct2--MRG15\n  Lst8--MRG15\n  Lst8--Syp\n  MRG15--Syp\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231\n- Network density: approximately 0.33\n- Hub proteins (highly connected): l(3)L1231, Mer\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--l(3)L1231\n  CG14062--l(3)L1231\n  CR18854--l(3)L1231\n  M1BP--M1BP\n  M1BP--l(3)L1231\n  Mer--Mer\n  Mer--l(3)L1231\n  RpS21--l(3)L1231\n  Snr1--l(3)L1231\n  Sry-alpha--l(3)L1231\n  betaggt-II--l(3)L1231\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mer--Snr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mer--Mer\n  Mer--Mer\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl\n\nTWO-HYBRID INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n  Acp26Aa--AdipoR\n  AdipoR--CG1418\n  AdipoR--CG8997\n  AdipoR--Chrac-16\n  AdipoR--Hsp23\n  AdipoR--Hsp26\n  AdipoR--Mes4\n  AdipoR--cpa\n  AdipoR--debcl\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp23--Hsp26\n\nCO-FRACTIONATION INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Acp26Aa--Acp26Aa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Hsp23--Hsp26\n  Hsp23--Hsp26\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Kdm2, Rca1, TFAM, olf413\n- Network density: approximately 0.67\n- Hub proteins (highly connected): olf413, TFAM\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Kdm2, Rca1, TFAM, olf413\n\nTWO-HYBRID INTERACTIONS:\n  Kdm2--olf413\n  Rca1--olf413\n  TFAM--olf413\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG16812, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG16812--CG16812\n  CG16812--Pih1D1\n  CG16812--fs(2)ltoPP43\n  CG3281--CG7386\n  CG3281--fs(2)ltoPP43\n  CG45068--fs(2)ltoPP43\n  CG5089--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  DNApol-delta--fs(2)ltoPP43\n  Pih1D1--fs(2)ltoPP43\n\nNETWORK SUMMARY: 8 proteins, 11 interactions\n\nNew protein to integrate: CG2709\n\nPredict the interactions for CG2709:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG2709--CG2709\n  CG2709--fs(2)ltoPP43"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bx, CG4822, CG5541, Kr, caps, trn\n\nTWO-HYBRID INTERACTIONS:\n  CG4822--caps\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Kr\n  Bx--caps\n  Bx--caps\n  Kr--caps\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--caps\n  Bx--trn\n  caps--trn\n  caps--trn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5541--caps\n\nNETWORK SUMMARY: 6 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG4822, CG5541, Kr, caps, trn\n\nTWO-HYBRID INTERACTIONS:\n  CG4822--caps\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Kr\n  Bx--caps\n  Bx--caps\n  Bx--trn\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--caps\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5541--caps\n  CG5541--caps\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm\n\nTWO-HYBRID INTERACTIONS:\n  CG12773--Cht9\n  CG14968--Cht9\n  Cht9--RpL29\n  Cht9--crm\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tpi--Tpi\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12773, CG14968, Cht9, RpL29, Rtnl1, Tpi, cher, crm\n\nTWO-HYBRID INTERACTIONS:\n  CG12773--Cht9\n  CG14968--Cht9\n  Cht9--RpL29\n  Cht9--Rtnl1\n  Cht9--Tpi\n  Cht9--cher\n  Cht9--crm\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Tpi\n  Rtnl1--Tpi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tpi--Tpi\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n\nTWO-HYBRID INTERACTIONS:\n  APOB--MTTP\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NF2--NF2\n  P4HB--P4HB\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--MTTP\n  CUL3--SNW1\n  LRRC31--TMPO\n  MTTP--TMPO\n  NF2--TMPO\n  PRKDC--SNW1\n  SNW1--SNW1\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--MTTP\n  MTTP--P4HB\n  P4HB--P4HB\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  MTTP--SNW1\n\nPOSITIVE GENETIC INTERACTIONS:\n  CUL3--SPPL3\n  MTTP--SPPL3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  MTTP--PRKDC\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, CUL3, LRRC31, MTTP, NF2, P4HB, PRKDC, SNW1, SPPL3, TMPO\n\nTWO-HYBRID INTERACTIONS:\n  APOB--MTTP\n  P4HB--P4HB\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NF2--NF2\n  P4HB--P4HB\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  NF2--NF2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--MTTP\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  MTTP--P4HB\n  NF2--NF2\n  P4HB--P4HB\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n  PRKDC--PRKDC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--CUL3\n  APOB--TMPO\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--MTTP\n  CUL3--P4HB\n  CUL3--P4HB\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--PRKDC\n  CUL3--SNW1\n  CUL3--TMPO\n  LRRC31--MTTP\n  LRRC31--PRKDC\n  LRRC31--TMPO\n  MTTP--NF2\n  MTTP--TMPO\n  NF2--TMPO\n  P4HB--TMPO\n  PRKDC--SNW1\n  PRKDC--TMPO\n  SNW1--SNW1\n  SNW1--TMPO\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  MTTP--SNW1\n\nPOSITIVE GENETIC INTERACTIONS:\n  CUL3--SPPL3\n  MTTP--SPPL3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  MTTP--PRKDC\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n  TMPO--TMPO\n\nNETWORK SUMMARY: 10 proteins, 56 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Hnf4\n  CG11164--Ubx\n  Gadd45--Hnf4\n  Hnf4--Hr78\n  Hnf4--Rel\n  Hnf4--sima\n  Hnf4--spi\n  Hr78--Rel\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hnf4--mdy\n  Hnf4--mdy\n  Ubx--abd-A\n  Ubx--abd-A\n  abd-A--spi\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nPCA INTERACTIONS:\n  Hnf4--Ubx\n  Hnf4--abd-A\n  Hr78--Ubx\n  Hr78--Ubx\n  Hr78--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2082, Lcp65Ag1, Lcp65Ag3, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag1\n  CG2082--Lcp65Ag3\n  CG2082--sa\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: Lcp65Ag2\n\nPredict the interactions for Lcp65Ag2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n\nTWO-HYBRID INTERACTIONS:\n  CG18624--CG5114\n  CG18624--Cpr92F\n  CG18624--Hsc70-4\n  CG18624--trol\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG18624\n  CG18624--CG5114\n  CG18624--Cpr92F\n  CG18624--Hsc70-4\n  CG18624--mam\n  CG18624--trol\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--GstE1\n  CG10914--GstE1\n  CG11964--GstE1\n  CG15602--GstE1\n  CG8206--GstE1\n  FER--GstE1\n  GstE1--cnc\n  GstE1--kermit\n  GstE1--sba\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  FER--FER\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FER--FER\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--sba\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10570, CG12470, CG1461, CG8907, Elba3, Snr1, koi, simj\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG12470--CG1461\n  CG1461--CG1461\n  CG1461--CG8907\n  CG1461--Elba3\n  CG1461--Snr1\n  CG1461--koi\n  CG1461--simj\n  koi--koi\n\nNETWORK SUMMARY: 8 proteins, 9 interactions\n\nNew protein to integrate: CG17325\n\nPredict the interactions for CG17325:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1461--CG17325"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG7386--Npc1b\n  Npc1b--eIF-5A\n  Npc1b--odd\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG7386--Npc1b\n  Npc1b--RpS25\n  Npc1b--bowl\n  Npc1b--eIF-5A\n  Npc1b--odd\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG13168--CG15423\n  CG13168--CG15549\n  CG13168--CG15578\n  CG13168--hoe1\n\nNETWORK SUMMARY: 8 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG13168--CG15423\n  CG13168--CG15549\n  CG13168--CG15578\n  CG13168--CG15919\n  CG13168--HP6\n  CG13168--hoe1\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG11345--Cip4\n  CG11345--HLH4C\n  CG11345--RtGEF\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG11345--CG4887\n  CG11345--Cip4\n  CG11345--HLH4C\n  CG11345--RtGEF\n  Cip4--Cip4\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10514, CG11164, CG11892, CG9986, poe, spn-B\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11892, CG10514\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10514, CG11164, CG11892, CG9986, poe, spn-B\n\nTWO-HYBRID INTERACTIONS:\n  CG10514--CG11892\n  CG11164--CG11892\n  CG11892--CG9986\n  CG11892--poe\n  CG11892--spn-B\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11248--CG1137\n  CG1137--CG4325\n  CG1137--RanBPM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG1137--p53\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11248--CG1137\n  CG1137--CG4325\n  CG1137--Git\n  CG1137--Pi3K21B\n  CG1137--RanBPM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG1137--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53\n- Network density: approximately 0.42\n- Hub proteins (highly connected): CG4622, p53\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG14569--CG4622\n  CG14655--CG4622\n  CG4622--CG7967\n  CG4622--Ibf2\n  CG4622--Ire1\n  CG4622--Nnf1a\n  CG4622--p53\n  CG7967--Nnf1a\n  Ibf2--Ibf2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX\n\nTWO-HYBRID INTERACTIONS:\n  HDAC7--TIAF1\n  JAK3--TIAF1\n  SMAD4--WWOX\n  TP53--WWOX\n  WWOX--WWOX\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  TIAF1--WWOX\n  TIAF1--WWOX\n  TP53--WWOX\n  TP53--WWOX\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HDAC7--HDAC7\n\nFRET INTERACTIONS:\n  SMAD4--TIAF1\n  SMAD4--WWOX\n  TIAF1--TIAF1\n  TIAF1--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TRIB3--TRIB3\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3, WWOX\n\nTWO-HYBRID INTERACTIONS:\n  HDAC7--TIAF1\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  SMAD4--WWOX\n  TIAF1--TRIB3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  WWOX--WWOX\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  TIAF1--TRIB3\n  TIAF1--TRIB3\n  TIAF1--WWOX\n  TIAF1--WWOX\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n  TP53--WWOX\n  TP53--WWOX\n\nFRET INTERACTIONS:\n  SMAD4--TIAF1\n  SMAD4--WWOX\n  TIAF1--TIAF1\n  TIAF1--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--WWOX\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TRIB3--TRIB3\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nNETWORK SUMMARY: 7 proteins, 65 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, lms\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--kin17\n  CG13625--kin17\n  CG17162--kin17\n  CG2017--kin17\n  CG31807--CG31807\n  CG31807--kin17\n  Hsp60B--kin17\n  Traf-like--kin17\n  kin17--lms\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: l(1)sc\n\nPredict the interactions for l(1)sc:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  kin17--l(1)sc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6569, MFS16, mmy, slgA\n\nTWO-HYBRID INTERACTIONS:\n  MFS16--slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--MFS16\n  CG6569--mmy\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6569, MFS16, mmy, slgA\n\nTWO-HYBRID INTERACTIONS:\n  MFS16--slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--MFS16\n  CG6569--mmy\n  MFS16--mmy\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG10616, grp\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG34383\n  CG10616--CG4955\n  CG10616--bur\n  CG10616--grp\n  CG10616--par-1\n  CG10616--pie\n  CG10616--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10616--CG16979\n  CG10616--CG3288\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n\nTWO-HYBRID INTERACTIONS:\n  Act5C--Cpr64Ad\n  Act5C--IntS14\n  Cpr64Ad--IntS14\n  IntS1--IntS12\n  IntS14--RpL4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS1--IntS12\n  IntS1--IntS14\n  IntS11--IntS12\n  IntS11--IntS14\n  IntS12--IntS14\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n\nTWO-HYBRID INTERACTIONS:\n  Act5C--Cpr64Ad\n  Act5C--IntS14\n  CG5642--IntS14\n  Cpr64Ad--IntS14\n  IntS1--IntS12\n  IntS10--IntS14\n  IntS10--IntS14\n  IntS14--RpL4\n  IntS14--eIF-4a\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS1--IntS11\n  IntS1--IntS12\n  IntS1--IntS14\n  IntS11--IntS12\n  IntS11--IntS14\n  IntS12--IntS14\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG7492--PHDP\n  CG7492--kermit\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1532--CG7492\n  CG1532--CG7737\n  CG1532--Got1\n  CG7492--CG7737\n  CG7492--Got1\n  CG7492--HIP-R\n  CG7737--HIP-R\n  CG7737--Sod\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7492--Nsf2\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG7492--PHDP\n  CG7492--kermit\n  Nsf2--Nsf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1532--CG7492\n  CG1532--CG7737\n  CG1532--Got1\n  CG1532--HIP-R\n  CG1532--Sod\n  CG7492--CG7737\n  CG7492--Got1\n  CG7492--HIP-R\n  CG7492--Sod\n  CG7737--HIP-R\n  CG7737--Sod\n  Got1--Sod\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7492--Nsf2\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15306, Cdlc2, Vap-33B, ctp\n\nTWO-HYBRID INTERACTIONS:\n  CG15306--Cdlc2\n  CG15306--Vap-33B\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15306, Cdlc2, Vap-33B, ctp\n\nTWO-HYBRID INTERACTIONS:\n  CG15306--Cdlc2\n  CG15306--Vap-33B\n  CG15306--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11523, CG6428, Marf, NC2alpha, RpS18\n\nTWO-HYBRID INTERACTIONS:\n  CG6428--Marf\n  CG6428--NC2alpha\n  CG6428--RpS18\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG6428, Marf, NC2alpha, RpS18\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG6428\n  CG6428--Marf\n  CG6428--NC2alpha\n  CG6428--RpS18\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG18135\n  CG10979--CG18135\n  CG18135--CG8292\n  CG18135--Myo10A\n  CG18135--Ppn\n  CG18135--RpS2\n  CG18135--Snr1\n  CG18135--Socs36E\n  CG18135--Srp68\n  CG8292--Ppn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18135--Myo10A\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah\n- Network density: approximately 0.33\n- Hub proteins (highly connected): sowah, Traf-like\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, par-6, sowah\n\nTWO-HYBRID INTERACTIONS:\n  CG13083--sowah\n  CG34168--sowah\n  Oda--sowah\n  RhoGAP92B--sowah\n  Traf-like--sowah\n  Traf-like--sowah\n  par-6--sowah\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG11753, RpS8\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2\n\nTWO-HYBRID INTERACTIONS:\n  CG10590--CG11753\n  CG11753--CG17162\n  CG11753--CG40127\n  CG11753--CG9090\n  CG11753--RpS14a\n  CG11753--RpS14b\n  CG11753--RpS8\n  CG11753--Tim17b2\n\nCO-FRACTIONATION INTERACTIONS:\n  RpS14a--RpS14b\n  RpS14a--RpS8\n  RpS14b--RpS8\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11151, CG7950, Pex5, alpha-Est7\n\nTWO-HYBRID INTERACTIONS:\n  CG11151--CG7950\n  CG11151--Pex5\n\nPCA INTERACTIONS:\n  CG11151--alpha-Est7\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11151, CG7950, Pex5, alpha-Est7\n\nTWO-HYBRID INTERACTIONS:\n  CG11151--CG7950\n  CG11151--Pex5\n\nPCA INTERACTIONS:\n  CG11151--alpha-Est7\n  alpha-Est7--alpha-Est7\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10341--Nup58\n  CG10341--Pms2\n  CG10341--Poxm\n  CG10341--Prp19\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  mbl--mbl\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10341--Nup58\n  CG10341--Pms2\n  CG10341--Poxm\n  CG10341--Prp19\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10341--mbl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  mbl--mbl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10341--Vdup1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc\n- Network density: approximately 0.42\n- Hub proteins (highly connected): nst, Akt1\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  Rtnl1--Rtnl1\n  beta-Spec--nst\n  betaggt-II--nst\n  eIF-4a--nst\n  nst--step\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--eIF-4a\n  Akt1--nst\n  Rtnl1--Rtnl1\n  Rtnl1--nst\n  Rtnl1--nst\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nst--sxc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  htl--nst\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n- Network density: approximately 0.28\n- Hub proteins (highly connected): CG42700, Hsp70Aa\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG42700--Hsp68\n  CG42700--Hsp70Aa\n  CG42700--Hsp70Ab\n  CG42700--Hsp70Ba\n  CG42700--Hsp70Bb\n  CG42700--Hsp70Bbb\n  CG42700--Hsp70Bc\n  CG42700--Snr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp68--Hsp70Aa\n  Hsp70Aa--Hsp70Ba\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12994, CG16853, ZnT41F, mew"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, ZnT41F, mew\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG12994--ZnT41F\n  CG12994--mew\n  ZnT41F--ZnT41F\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG9426, HipHop, Spred, grp, ms(3)K81\n\nTWO-HYBRID INTERACTIONS:\n  CG9426--ms(3)K81\n  Spred--ms(3)K81\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  grp--ms(3)K81\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9426, HipHop, Spred, grp, ms(3)K81\n\nTWO-HYBRID INTERACTIONS:\n  CG9426--CG9426\n  CG9426--ms(3)K81\n  Spred--ms(3)K81\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  HipHop--ms(3)K81\n  HipHop--ms(3)K81\n  grp--ms(3)K81\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG13494--Obp56a\n  CG14684--Obp56a\n  Lcp65Ae--Obp56a\n  Obp56a--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: CG11409\n\nPredict the interactions for CG11409:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11409--Obp56a"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG6972\n  CG13032--CG17666\n  CG17666--CG6972\n  CG3213--CG6972\n  CG6972--CG7046\n  CG6972--Rbp\n  CG6972--TFAM\n\nPCA INTERACTIONS:\n  CG7046--CG7046\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG6972\n  CG13032--CG17666\n  CG13032--CG6972\n  CG17666--CG6972\n  CG3213--CG6972\n  CG6972--CG7046\n  CG6972--HLH4C\n  CG6972--Lim3\n  CG6972--Rbp\n  CG6972--TFAM\n  HLH4C--Lim3\n\nPCA INTERACTIONS:\n  CG7046--CG7046\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AdenoK, CG17187, Glycogenin, Taf12\n- Network density: approximately 0.83\n- Hub proteins (highly connected): AdenoK, Taf12\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AdenoK, CG17187, Glycogenin, Taf12\n\nTWO-HYBRID INTERACTIONS:\n  AdenoK--Glycogenin\n  AdenoK--Taf12\n  Glycogenin--Glycogenin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AdenoK--CG17187\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf12--Taf12\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr\n- Network density: approximately 1.00\n- Hub proteins (highly connected): rpr, Den1\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG14044, CG8145, Den1, Nedd8, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Den1\n  CG14044--Den1\n  CG8145--Den1\n  CG8145--Den1\n  Den1--Nedd8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Den1--Nedd8\n  W--W\n  rpr--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--Nedd8\n  Den1--W\n  Den1--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Den1--Nedd8\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Den1--Nedd8\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--rpr\n\nNETWORK SUMMARY: 7 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG10657\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Act5C--CG10657\n  CG10657--CG13887\n  CG10657--CG4119\n  CG10657--Df31\n  CG10657--FK506-bp2\n  CG10657--Ssb-c31a\n  CG10657--abs\n  CG13887--CG4119\n  CG13887--Df31\n  CG4119--Df31\n  CG4119--Ssb-c31a\n  CG4119--abs\n  Df31--FK506-bp2\n  Df31--Ssb-c31a\n  FK506-bp2--Ssb-c31a\n  Ssb-c31a--abs\n\nNETWORK SUMMARY: 9 proteins, 17 interactions\n\nNew protein to integrate: snRNP-U1-70K\n\nPredict the interactions for snRNP-U1-70K:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10657--snRNP-U1-70K\n  CG4119--snRNP-U1-70K\n  Ssb-c31a--snRNP-U1-70K\n  abs--snRNP-U1-70K"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17029, ImpL3, Vps28\n\nTWO-HYBRID INTERACTIONS:\n  CG17029--Vps28\n\nNETWORK SUMMARY: 3 proteins, 1 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17029, ImpL3, Vps28\n\nTWO-HYBRID INTERACTIONS:\n  CG17029--ImpL3\n  CG17029--ImpL3\n  CG17029--Vps28\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: BPY2, MAP1S, PPIA, UBE3A\n- Network density: approximately 6.17\n- Hub proteins (highly connected): UBE3A, PPIA\n- Total interactions: approximately 37"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BPY2, MAP1S, PPIA, UBE3A\n\nTWO-HYBRID INTERACTIONS:\n  BPY2--MAP1S\n  BPY2--UBE3A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BPY2--MAP1S\n  PPIA--PPIA\n  PPIA--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BPY2--UBE3A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  BPY2--PPIA\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PPIA--PPIA\n  PPIA--PPIA\n\nNETWORK SUMMARY: 4 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM\n\nTWO-HYBRID INTERACTIONS:\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  DLG4--DLG4\n  GOPC--GOPC\n  STOM--STOM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--ASIC3\n  ASIC2--STOM\n  ASIC3--DLG4\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  ASIC3--STOM\n  DLG4--DLG4\n  DLG4--LIN7B\n  GOPC--GOPC\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ASIC3--PRKACA\n  PRKACA--PRKACA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  STOM--STOM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRKACA--PRKACA\n  STOM--STOM\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  MAGI1--MAGI1\n\nNETWORK SUMMARY: 8 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bx, Chi, Grasp65, Hydr2, how"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, Chi, Grasp65, Hydr2, how\n\nTWO-HYBRID INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Grasp65--Hydr2\n  Hydr2--how\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Chi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Hydr2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Chi--Hydr2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bx--Chi\n  Chi--Chi\n  Chi--Chi\n  how--how\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Grasp65--how\n\nNETWORK SUMMARY: 5 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10426, CG17698, CG3309, CG34380, bdg, p53\n- Network density: approximately 0.53\n- Hub proteins (highly connected): p53, CG10426\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG17698, CG3309, CG34380, bdg, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG17698\n  CG10426--CG3309\n  CG10426--CG34380\n  CG10426--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10426--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n\nTWO-HYBRID INTERACTIONS:\n  4E-T--4E-T\n  4E-T--CG13689\n  Akh--CG13689\n  CG13689--CG13733\n  CG13689--CG34117\n  CG13689--CG6769\n  CG13689--Dl\n  CG13689--LKR\n  CG13689--Moca-cyp\n  CG13689--ste14\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dl--Dl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15293, CG5013, TfIIEalpha\n\nTWO-HYBRID INTERACTIONS:\n  CG15293--TfIIEalpha\n  CG5013--TfIIEalpha\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: TfIIEbeta\n\nPredict the interactions for TfIIEbeta:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3740, CG5059, RhoGEF2, T48, kermit, l(2)gd1\n\nTWO-HYBRID INTERACTIONS:\n  CG3740--T48\n  CG5059--CG5059\n  CG5059--T48\n  T48--kermit\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  T48--l(2)gd1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  RhoGEF2--T48\n  RhoGEF2--T48\n\nNETWORK SUMMARY: 6 proteins, 7 interactions\n\nNew protein to integrate: egl\n\nPredict the interactions for egl:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-RNA INTERACTIONS:\n  T48--egl\n  egl--egl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17244, CG9293, Mes4, NC2alpha, Taf11\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--CG9293\n  CG17244--Mes4\n  CG17244--NC2alpha\n  CG17244--Taf11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Taf11\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Liprin-beta\n\nPredict the interactions for Liprin-beta:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm\n\nTWO-HYBRID INTERACTIONS:\n  Pabp2--Pabp2\n  Pabp2--swm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rux--swm\n  rux--swm\n  smo--swm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  cnk--swm\n  hh--smo\n  hh--smo\n  hh--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n  hh--hh\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  FucTA--swm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15\n\nTWO-HYBRID INTERACTIONS:\n  ATRNL1--DYRK1A\n  ATRNL1--LCOR\n  ATRNL1--MC4R\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DYRK1A--DYRK1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--DEFB135\n  ATRNL1--FAM19A2\n  ATRNL1--HYOU1\n  ATRNL1--RNF157\n  ATRNL1--ZDHHC15\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--HNRNPU\n  DYRK1A--HYOU1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATRNL1--HNRNPU\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HNRNPU--HNRNPU\n  HNRNPU--HNRNPU\n  HYOU1--HYOU1\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13321, CG15337, CG3062, Noa36, Traf-like\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG3062, Noa36\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13321, CG15337, CG3062, Noa36, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG13321--CG3062\n  CG15337--CG3062\n  CG3062--Noa36\n  CG3062--Traf-like\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14151, CG14317, CG2247, TFAM, alph\n\nTWO-HYBRID INTERACTIONS:\n  CG14151--CG14317\n  CG14151--CG2247\n  CG14151--TFAM\n  CG14151--alph\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Rca1\n\nPredict the interactions for Rca1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14151--Rca1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto\n- Network density: approximately 0.39\n- Hub proteins (highly connected): Fip1, CG11266\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--Fip1\n  CG13871--Fip1\n  CG9975--Fip1\n  Clp--Fip1\n  Fip1--Myo10A\n  Fip1--Myo10A\n  Fip1--Neto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fip1--Myo10A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Clp--CstF-64\n  CstF-64--Fip1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10674, CG1544, CG34267, PIG-C, mtd\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG34267\n  CG10674--PIG-C\n  CG34267--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, CG34267, PIG-C, mtd\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG10674--CG34267\n  CG10674--PIG-C\n  CG10674--mtd\n  CG34267--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n\nTWO-HYBRID INTERACTIONS:\n  CG11327--Galk\n  CG4835--Galk\n  CG9986--Galk\n  Galk--intr\n  Galk--mbc\n  Galk--rdx\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galk--Pp2B-14D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: Atpalpha\n\nPredict the interactions for Atpalpha:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Atpalpha--Galk"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6569, MFS16, mmy, slgA"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6569, MFS16, mmy, slgA\n\nTWO-HYBRID INTERACTIONS:\n  MFS16--slgA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6569--MFS16\n  CG6569--mmy\n  MFS16--mmy\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1\n\nTWO-HYBRID INTERACTIONS:\n  AP2M1--LY9\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LY9--PTPN11\n  LY9--SH2D1A\n  LY9--SH2D1A\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DDX19B--LY9\n  IDUA--LY9\n  PTPN11--PTPN11\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX19B--DDX19B\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1\n\nTWO-HYBRID INTERACTIONS:\n  AP2M1--LY9\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LY9--PTPN11\n  LY9--SH2D1A\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AP2M1--AP2M1\n  DDX19B--LY9\n  EDEM3--LY9\n  GUSB--LY9\n  HLA-F--LY9\n  IDUA--LY9\n  PTPN11--PTPN11\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX19B--DDX19B\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atg8b, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n\nTWO-HYBRID INTERACTIONS:\n  Atg8b--Tbc1d15-17\n  Hrs--Tbc1d15-17\n  Tbc1d15-17--spartin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dmn--Tbc1d15-17\n  Rab11--Tbc1d15-17\n  Rab14--Tbc1d15-17\n  Rab5--Tbc1d15-17\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dmn--Rab5\n  Rab11--Rab5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rab5--Tbc1d15-17\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rab11--Tom20\n  Tbc1d15-17--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: CG7407\n\nPredict the interactions for CG7407:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG7407--Dmn\n  CG7407--Tbc1d15-17"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12012, CG18336, CG4822, caps, mle\n- Network density: approximately 0.60\n- Hub proteins (highly connected): mle, CG4822\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12012, CG18336, CG4822, caps, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG18336--CG4822\n  CG4822--caps\n  CG4822--mle\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12012--CG4822\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mle--mle\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n\nTWO-HYBRID INTERACTIONS:\n  CAP--robl22E\n  CG17470--robl22E\n  CG30409--robl22E\n  CG4198--robl22E\n  Idgf4--robl22E\n  Prosbeta3--robl22E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n\nTWO-HYBRID INTERACTIONS:\n  CAP--robl22E\n  CG14965--robl22E\n  CG17470--robl22E\n  CG30409--robl22E\n  CG4198--robl22E\n  H2.0--robl22E\n  Idgf4--robl22E\n  Prosbeta3--robl22E\n  robl22E--whd\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8\n\nTWO-HYBRID INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FMR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--GRIP2\n  FXR1--FXR1\n  FXR1--GRIP2\n  GFI1B--GRIP2\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  RNF8--RNF8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FXR1\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  PPFIA1--PPFIA1\n  PPFIA1--PPFIA1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  ERC2--GRIP2\n  ERC2--PPFIA1\n  ERC2--PPFIA1\n  FMR1--FMR1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GRIP2\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GRIP2--PPFIA1\n  GRIP2--PPFIA1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RNF8--RNF8\n  RNF8--RNF8\n  RNF8--RNF8\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nCO-PURIFICATION INTERACTIONS:\n  FMR1--FXR1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  KRAS--KRAS\n  KRAS--KRAS\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  FMR1--KRAS\n  GRIP2--KRAS\n  KRAS--KRAS\n\nPOSITIVE GENETIC INTERACTIONS:\n  GFI1B--GFI1B\n\nFRET INTERACTIONS:\n  KRAS--KRAS\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--RNF8\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--PPFIA1\n  KRAS--PPFIA1\n\nNEGATIVE GENETIC INTERACTIONS:\n  KRAS--KRAS\n\nPCA INTERACTIONS:\n  KRAS--KRAS\n\nNETWORK SUMMARY: 9 proteins, 65 interactions\n\nNew protein to integrate: TRIM21\n\nPredict the interactions for TRIM21:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GRIP2--TRIM21\n  RNF8--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TRIM21--TRIM21"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-7\n  CG6304--eIF4E-7\n  CG9775--eIF4E-7\n  Gld2--eIF4E-7\n  Thor--eIF4E-7\n  Thor--eIF4E-7\n  cup--eIF4E-7\n  eIF4E-7--eIF4G\n  eIF4E-7--eIF4G2\n  eIF4E-7--mxt\n  eIF4E-7--mxt\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  eIF4E-7--eIF4G\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10721, CG1503, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG1503--W\n  CG1503--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 4 proteins, 12 interactions\n\nNew protein to integrate: Hdac3\n\nPredict the interactions for Hdac3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1503--Hdac3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1\n\nTWO-HYBRID INTERACTIONS:\n  CG3713--CG6425\n  CG3880--CG6425\n  CG6425--CHIP\n  CG6425--Cpr47Ea\n  CG6425--CycK\n  CG6425--Scp2\n  CG6425--Taz\n  CG6425--nonA-l\n  CG6425--sip1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  Scp2--Scp2\n  Scp2--Scp2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  PGRP-LE--PGRP-LE\n  PGRP-LE--PGRP-LE\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1943--CG33672\n  CG1943--PGRP-LE\n  CG1943--PHDP\n  CG1943--Vsx2\n  PGRP-LE--PGRP-LE\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-FRACTIONATION INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1943--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12985, Foxp3, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Sirt7\n  Sirt7--Vap-33B\n  Sirt7--ergic53\n  Sirt7--polo\n  Sirt7--rhea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Foxp3--Sirt7\n  Foxp3--Zfp512\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  Rrp7a--Sirt7\n  Sirt7--Zfp512\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: Recql\n\nPredict the interactions for Recql:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-FRACTIONATION INTERACTIONS:\n  Recql--Sirt7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs\n- Network density: approximately 0.38\n- Hub proteins (highly connected): CG10237, Pli\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs\n\nTWO-HYBRID INTERACTIONS:\n  CG10237--CG6180\n  CG10237--CG9796\n  CG10237--CG9825\n  CG10237--cbs\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10237--CG2254\n  CG10237--CG34205\n  CG10237--CG7979\n  CG10237--Pli\n  CG34205--CG7979\n  CG34205--Pli\n  CG7979--Pli\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pli--Pli\n\nPCA INTERACTIONS:\n  CG2254--CG2254\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10237--Tom20\n  CG6180--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12860, NimC1, park\n\nTWO-HYBRID INTERACTIONS:\n  CG12860--NimC1\n  CG12860--park\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  park--park\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  park--park\n\nNETWORK SUMMARY: 3 proteins, 4 interactions\n\nNew protein to integrate: sick\n\nPredict the interactions for sick:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12860--sick"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt\n- Network density: approximately 0.38\n- Hub proteins (highly connected): eIF4E-3, CG11486\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG11486\n  Bap60--CG8907\n  Bap60--eIF4E-3\n  CG11486--eIF4E-3\n  CG11486--eIF4E-3\n  CG13510--eIF4E-3\n  CG8907--eIF4E-3\n  Thor--eIF4E-3\n  TwdlE--eIF4E-3\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--mxt\n  eIF4E-3--mxt\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--eIF4G2\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG12581, Cka\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7\n\nTWO-HYBRID INTERACTIONS:\n  CG12581--CG3085\n  CG12581--CG7987\n  CG12581--Cka\n  CG12581--Jon25Bii\n  CG12581--Jon65Ai\n  CG12581--Jon65Aiii\n  CG12581--Jon99Cii\n  CG12581--Snr1\n  CG12581--yip7\n  CG3085--Jon99Cii\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti\n- Network density: approximately 0.62\n- Hub proteins (highly connected): AGO2, Elp1\n- Total interactions: approximately 28"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Elp1\n  CG30393--Elp1\n  CG8368--Elp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Dcr-1\n  AGO2--Dcr-1\n  AGO2--Dcr-2\n  AGO2--Dcr-2\n  AGO2--Elp1\n  AGO2--Elp1\n  Dcr-1--Elp1\n  Dcr-1--Elp1\n  Dcr-2--Dcr-2\n  Dcr-2--Elp1\n  Dcr-2--Elp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--rti\n  Elp1--Elp3\n  Elp1--rti\n  Elp3--rti\n  rti--rti\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  AGO2--roX1\n  Dcr-2--roX1\n  Elp1--roX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  AGO2--Dcr-2\n  Elp3--Elp3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj\n- Network density: approximately 0.28\n- Hub proteins (highly connected): CG1461, koi\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG12470, CG1461, CG17325, CG8907, Elba3, Snr1, koi, simj\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG12470--CG1461\n  CG1461--CG1461\n  CG1461--CG17325\n  CG1461--CG8907\n  CG1461--Elba3\n  CG1461--Snr1\n  CG1461--koi\n  CG1461--simj\n  koi--koi\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10157, CG31038, CG9902, EndoGI, lig3\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--CG31038\n  CG10157--EndoGI\n  CG10157--lig3\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG31038, CG9902, EndoGI, lig3\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--CG31038\n  CG10157--CG9902\n  CG10157--EndoGI\n  CG10157--lig3\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10799, CG1640, Dif, Ppcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10799--CG1640\n  CG1640--Dif\n  CG1640--Ppcs\n  Ppcs--Ppcs\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: Acam\n\nPredict the interactions for Acam:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Acam--CG1640"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n\nTWO-HYBRID INTERACTIONS:\n  Jdp2--Jdp2\n  Taf11--Taf13\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Jdp2--Jdp2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Tbp\n  Taf11--Tbp\n  Taf13--e(y)3\n  Taf13--e(y)3\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Tbp--TfIIA-L\n  Tbp--TfIIA-L\n  TfIIA-L--TfIIA-L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Taf11--Taf6\n  Taf11--Tbp\n  Taf13--Taf6\n  Taf6--Tbp\n\nCO-FRACTIONATION INTERACTIONS:\n  Tbp--e(y)3\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n\nTWO-HYBRID INTERACTIONS:\n  Hoxd12--Taf13\n  Jdp2--Jdp2\n  Jdp2--Taf13\n  Taf11--Taf13\n  Taf11--Taf13\n  Taf13--Tbp\n  Taf13--TfIIA-L\n\nCO-PURIFICATION INTERACTIONS:\n  Taf6--e(y)3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Jdp2--Jdp2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Taf11\n  Taf11--Tbp\n  Taf11--Tbp\n  Taf13--e(y)3\n  Taf13--e(y)3\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Tbp--TfIIA-L\n  Tbp--TfIIA-L\n  Tbp--e(y)3\n  Tbp--e(y)3\n  Tbp--e(y)3\n  TfIIA-L--TfIIA-L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Taf11--Taf6\n  Taf11--Tbp\n  Taf13--Taf6\n  Taf6--Tbp\n\nCO-FRACTIONATION INTERACTIONS:\n  Tbp--e(y)3\n\nPOSITIVE GENETIC INTERACTIONS:\n  Fitm2--Taf13\n\nNETWORK SUMMARY: 9 proteins, 31 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11790, CG3397, CG6733, CoIV, ng2\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG3397\n  CG11790--CG6733\n  CG11790--CoIV\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG3397, CG6733, CoIV, ng2\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG3397\n  CG11790--CG6733\n  CG11790--CoIV\n  CG11790--ng2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11300, CG12491, CG14074, CG2852, CG31029, ball, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG11300--CG12491\n  CG11300--CG14074\n  CG11300--CG2852\n  CG11300--CG31029\n  CG11300--ball\n  CG11300--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  lwr--lwr\n  lwr--lwr\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP5B, NDUFA13, PDZK1, SLC22A12, SMAP2\n\nTWO-HYBRID INTERACTIONS:\n  PDZK1--SLC22A12\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PDZK1--SLC22A12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATP5B--SLC22A12\n  NDUFA13--SLC22A12\n  SLC22A12--SMAP2\n  SLC22A12--SMAP2\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ARPC3, CCR10, DDX58, PRRC2A\n\nTWO-HYBRID INTERACTIONS:\n  CCR10--PRRC2A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CCR10--DDX58\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARPC3, CCR10, DDX58, PRRC2A\n\nTWO-HYBRID INTERACTIONS:\n  ARPC3--CCR10\n  CCR10--PRRC2A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ARPC3--DDX58\n  CCR10--DDX58\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRRC2A--PRRC2A\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5144--Cyp6a9\n  Cib2--Cyp6a9\n  Cyp6a9--Pak\n  Cyp6a9--RhoGAP68F\n  Cyp6a9--nej\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a21--Cyp6a9\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5144--Cyp6a9\n  Cib2--Cyp6a9\n  Cyp6a9--Pak\n  Cyp6a9--RhoGAP68F\n  Cyp6a9--nej\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a21--Cyp6a9\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1092, CG13397, CG9372, CG9947, Cnx99A, Crc, Fer1HCH, Gp93, PH4alphaEFB\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--CG13397\n  CG1092--CG9372\n  CG1092--CG9947\n  CG1092--Cnx99A\n  CG1092--Crc\n  CG1092--Fer1HCH\n  CG1092--Gp93\n  CG1092--PH4alphaEFB\n  CG13397--CG9372\n  CG13397--Cnx99A\n  CG13397--Fer1HCH\n  CG9947--Cnx99A\n  CG9947--Fer1HCH\n  CG9947--Gp93\n  Cnx99A--Gp93\n  Crc--Gp93\n  Fer1HCH--Gp93\n  Fer1HCH--PH4alphaEFB\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: Pdi\n\nPredict the interactions for Pdi:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG1092--Pdi\n  Crc--Pdi\n  Fer1HCH--Pdi\n  Gp93--Pdi\n  PH4alphaEFB--Pdi"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl\n\nTWO-HYBRID INTERACTIONS:\n  Hsp68--Zmynd10\n  Rtnl1--Rtnl1\n  Zmynd10--tilB\n  Zmynd10--yl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Zmynd10\n  Rtnl1--Zmynd10\n\nCO-FRACTIONATION INTERACTIONS:\n  Nutm1--Zmynd10\n  Xkrx--Zmynd10\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7206, CG8851, CG9170, Dysb, Pp1-87B, Pp1alpha-96A, Sry-alpha, Tm2, mGluR, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG7206--CG9170\n  CG8851--CG9170\n  CG8851--Dysb\n  CG9170--Dysb\n  CG9170--Pp1-87B\n  CG9170--Pp1alpha-96A\n  CG9170--Sry-alpha\n  CG9170--Tm2\n  CG9170--mGluR\n  CG9170--rau\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Pp1-87B--Pp1alpha-96A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n- Network density: approximately 0.73\n- Hub proteins (highly connected): KLHL18, CG10324\n- Total interactions: approximately 33"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG11266\n  CG10324--CG12877\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6340\n  CG10324--CG6843\n  CG10324--SRm160\n  CG10324--l(2)37Cb\n  CG11266--CG11266\n  CG11266--CG31211\n  CG11266--CG6340\n  CG11266--CG6843\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG5808\n  CG31211--CG6843\n  CG31211--SRm160\n  CG5808--CG6843\n  CG6340--CG6843\n  CG6843--CG6843\n  CG6843--SRm160\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n- Network density: approximately 0.62\n- Hub proteins (highly connected): PGRP-LE, CG1943\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  PGRP-LE--PGRP-LE\n  PGRP-LE--PGRP-LE\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1943--CG33672\n  CG1943--PGRP-LE\n  CG1943--PHDP\n  CG1943--Vsx2\n  PGRP-LE--PGRP-LE\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-FRACTIONATION INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1943--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Cdk5--Mib1\n  Mib1--OTUD4\n  Tm1--Tm1\n\nCO-LOCALIZATION INTERACTIONS:\n  Cdk5--Mib1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Csnk2b--Mib1\n  Fibp--Mib1\n  Fibp--Tm1\n  Fibp--zip\n  Tm1--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  Csnk2b--Fibp\n  Fibp--Gsk3b\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  OTUD4--OTUD4\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG7196--Fibp\n  Fibp--GstD4\n  Tm1--Tm1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdk5--Mib1\n  Cdk5--Mib1\n  Csnk2b--Mib1\n  Fibp--Mib1\n  Fibp--Tm1\n  Fibp--zip\n  Mib1--Mib1\n  Tm1--zip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Cdk5--Mib1\n  Fibp--OTUD4\n  Mib1--Mib1\n  Mib1--OTUD4\n  Tm1--Tm1\n\nCO-LOCALIZATION INTERACTIONS:\n  Cdk5--Mib1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Mib1--Mib1\n  Mib1--Mib1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  Cdk5--Fibp\n  Csnk2b--Fibp\n  Fibp--Gsk3b\n  Tm1--Tm1\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  OTUD4--OTUD4\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG11710--Lapsyn\n  CtBP--CtBP\n  CtBP--Lapsyn\n  Ice--Ice\n  Ice--Ice\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3793--Ice\n  CG7277--Ice\n  CG7277--Lapsyn\n  Ice--Lapsyn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG11710--Lapsyn\n  CG43691--Lapsyn\n  CG9293--Lapsyn\n  CtBP--CtBP\n  CtBP--Lapsyn\n  Ice--Ice\n  Ice--Ice\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3793--CG7277\n  CG3793--Ice\n  CG3793--Lapsyn\n  CG7277--Ice\n  CG7277--Lapsyn\n  Ice--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lapsyn--rut\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11523, CG9791, Tom20, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG9791, Tom20, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG9791\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG9791--Tom20\n  CG9791--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10924, CG30409, Pvf1, Roc2, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG10924--CG30409\n  CG30409--Pvf1\n  CG30409--Roc2\n  CG30409--spir\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: robl22E\n\nPredict the interactions for robl22E:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG30409--robl22E"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n\nTWO-HYBRID INTERACTIONS:\n  CG14853--CG7386\n  CG14853--CG8349\n  CG14853--Gclm\n  CG14853--RpL7\n  CG14853--morgue\n  CG14853--spas\n  CG8349--CG8349\n\nCO-FRACTIONATION INTERACTIONS:\n  spas--spas\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spas--spas\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n\nTWO-HYBRID INTERACTIONS:\n  CG14853--CG15365\n  CG14853--CG6287\n  CG14853--CG7386\n  CG14853--CG8349\n  CG14853--Cpr50Ca\n  CG14853--Gclm\n  CG14853--RpL7\n  CG14853--morgue\n  CG14853--spas\n  CG7386--CG7386\n  CG8349--CG8349\n\nCO-FRACTIONATION INTERACTIONS:\n  spas--spas\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spas--spas\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10208, CG7564, Fadd, Sxl\n- Network density: approximately 1.83\n- Hub proteins (highly connected): Sxl, CG10208\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, Fadd, Sxl\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG10208--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10208--Fadd\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 4 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10396, CG30089, ZnT41F, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10396--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG30089, ZnT41F, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG10396--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10396--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG18522--dar1\n  CG31955--dar1\n  CG5674--dar1\n  CG5674--hale\n  Mst87F--dar1\n  Mst87F--hale\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dar1--kn\n  dar1--sw\n\nCO-FRACTIONATION INTERACTIONS:\n  kn--kn\n  nudE--sw\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG18522--dar1\n  CG18522--hale\n  CG31955--dar1\n  CG5674--dar1\n  CG5674--hale\n  Mst87F--dar1\n  Mst87F--hale\n  dar1--hale\n  hale--hale\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dar1--kn\n  dar1--nudE\n  dar1--sw\n\nCO-FRACTIONATION INTERACTIONS:\n  kn--kn\n  nudE--sw\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  nudE--sw\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, spz\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--CG33017\n  Arp5--CSN4\n  Arp5--Rap2l\n  Arp5--spz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp5--CG12659\n  Arp5--CG12659\n  Arp5--pho\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  spz--spz\n\nCO-FRACTIONATION INTERACTIONS:\n  spz--spz\n  spz--spz\n  spz--spz\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spz--spz\n\nCO-LOCALIZATION INTERACTIONS:\n  spz--spz\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  spz--spz\n  spz--spz\n\nNETWORK SUMMARY: 7 proteins, 15 interactions\n\nNew protein to integrate: rasp\n\nPredict the interactions for rasp:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Arp5--rasp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n- Network density: approximately 0.44\n- Hub proteins (highly connected): CG17328, D\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG17328\n  CG11534--CG32846\n  CG17328--CG30324\n  CG17328--CG32846\n  CG17328--CycK\n  CG17328--D\n  CG17328--Hr78\n  CG17328--RpL3\n  CG17328--cg\n  CG17328--hale\n  CG30324--hale\n  CG32846--D\n  CG32846--hale\n  CycK--D\n  CycK--hale\n  D--D\n  D--D\n  RpL3--hale\n  hale--hale\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide\n- Network density: approximately 0.29\n- Hub proteins (highly connected): spheroide, Edc3\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide\n\nTWO-HYBRID INTERACTIONS:\n  Acp95EF--spheroide\n  Edc3--spheroide\n  PebIII--spheroide\n  RN-tre--spheroide\n  fra--spheroide\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14823--spheroide\n  CG9581--Jon65Aiv\n  CG9581--spheroide\n  Fer1HCH--Jon65Aiv\n  Fer1HCH--spheroide\n  Jon65Aiv--spheroide\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Edc3--Edc3\n  fra--fra\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG10657, Ssb-c31a\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG10657\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Act5C--CG10657\n  CG10657--CG13887\n  CG10657--CG4119\n  CG10657--Df31\n  CG10657--FK506-bp2\n  CG10657--Ssb-c31a\n  CG10657--abs\n  CG10657--snRNP-U1-70K\n  CG13887--CG4119\n  CG13887--Df31\n  CG4119--Df31\n  CG4119--Ssb-c31a\n  CG4119--abs\n  CG4119--snRNP-U1-70K\n  Df31--FK506-bp2\n  Df31--Ssb-c31a\n  FK506-bp2--Ssb-c31a\n  Ssb-c31a--abs\n  Ssb-c31a--snRNP-U1-70K\n  abs--snRNP-U1-70K\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A\n- Network density: approximately 0.67\n- Hub proteins (highly connected): hpo, CG11180\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG11180--CG14302\n  CG11180--CG31122\n  CG11180--CG3548\n  CG11180--Sap47\n  CG11180--hpo\n  CG11180--spn-A\n  CG3548--CG3548\n  hpo--hpo\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nFRET INTERACTIONS:\n  hpo--hpo\n\nPCA INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--Tsc1\n  CG11180--foxo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tsc1--hpo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  hpo--hpo\n\nNETWORK SUMMARY: 9 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AP-1gamma, CG12115, CG15185, CG7786, osk\n\nTWO-HYBRID INTERACTIONS:\n  AP-1gamma--CG15185\n  CG12115--CG15185\n  CG15185--CG7786\n  CG15185--osk\n\nFRET INTERACTIONS:\n  CG7786--CG7786\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 5 proteins, 8 interactions\n\nNew protein to integrate: sgg\n\nPredict the interactions for sgg:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15185--sgg"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG12290, CG13272, CG14232, CG17985, CG6337, CG9514, Vha16-2, Vha16-4, oc\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG12290\n  CG11269--CG13272\n  CG11269--CG14232\n  CG11269--CG17985\n  CG11269--CG6337\n  CG11269--CG9514\n  CG11269--Vha16-2\n  CG11269--Vha16-4\n  CG11269--oc\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG11438\n  CG11438--CG13920\n  CG11438--CG5104\n  CG11438--CG8668\n  CG11438--Cys\n  CG11438--Rh50\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG11438\n  CG11438--CG13920\n  CG11438--CG33333\n  CG11438--CG43129\n  CG11438--CG5104\n  CG11438--CG8668\n  CG11438--Cys\n  CG11438--Rh50\n  CG11438--ng2\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG8191, CG11200\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG13747, CG17364, CG5151, CG7778, CG8191, kra\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG8191\n  CG13747--CG8191\n  CG17364--CG8191\n  CG5151--CG8191\n  CG7778--CG8191\n  CG8191--kra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10550, CG13996, CG1746, CG9986\n\nTWO-HYBRID INTERACTIONS:\n  CG10550--CG13996\n  CG10550--CG1746\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10550, CG13996, CG1746, CG9986\n\nTWO-HYBRID INTERACTIONS:\n  CG10550--CG13996\n  CG10550--CG1746\n  CG10550--CG9986\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14684, IP3K2, Rbp6, Tm1, lark, yuri\n\nTWO-HYBRID INTERACTIONS:\n  CG14684--yuri\n  IP3K2--yuri\n  Rbp6--yuri\n  Tm1--Tm1\n  lark--yuri\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tm1--yuri\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: Ubx\n\nPredict the interactions for Ubx:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Ubx--yuri"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--CG5514\n  CG10754--dar1\n  CG16941--noi\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10754--CG11985\n  CG10754--CG16941\n  CG10754--snf\n  CG11985--CG16941\n  CG11985--noi\n  CG11985--snf\n  Ndc80--Nuf2\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  snf--snf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10754--Ndc80\n  CG10754--Ndc80\n  CG10754--Prp31\n  Ndc80--Prp31\n  Nuf2--Prp31\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--CG5514\n  CG10754--dar1\n  CG16941--noi\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10754--CG11985\n  CG10754--CG16941\n  CG10754--noi\n  CG10754--snf\n  CG11985--CG16941\n  CG11985--noi\n  CG11985--snf\n  CG11985--snf\n  CG16941--noi\n  CG16941--snf\n  Ndc80--Nuf2\n  Ndc80--Nuf2\n  noi--snf\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  snf--snf\n\nCO-FRACTIONATION INTERACTIONS:\n  snf--snf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10754--Ndc80\n  CG10754--Ndc80\n  CG10754--Nuf2\n  CG10754--Prp31\n  CG10754--Prp31\n  Ndc80--Prp31\n  Ndc80--Prp31\n  Nuf2--Prp31\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10889, CG11710, CG3793, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG11710--Lapsyn\n  CG9293--Lapsyn\n  CtBP--CtBP\n  CtBP--Lapsyn\n  Ice--Ice\n  Ice--Ice\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3793--CG7277\n  CG3793--Ice\n  CG3793--Lapsyn\n  CG7277--Ice\n  CG7277--Lapsyn\n  Ice--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lapsyn--rut\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: CG43691\n\nPredict the interactions for CG43691:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG43691--Lapsyn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, cav, eIF-4a, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG14011--CG44243\n  CG14011--CG7357\n  CG14011--CG7386\n  CG14011--CG9911\n  CG14011--Ef1beta\n  CG14011--cav\n  CG14011--eIF-4a\n  CG14011--rau\n  CG7386--CG7386\n  CG7386--rau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: RpS17\n\nPredict the interactions for RpS17:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14011--RpS17"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG2046--Gtp-bp\n  CG33017--Gtp-bp\n  Gtp-bp--TwdlE\n  Gtp-bp--obst-E\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gtp-bp--Orco\n  Gtp-bp--S6kII\n  Gtp-bp--SrpRbeta\n  Gtp-bp--gig\n  Gtp-bp--rictor\n  S6kII--gig\n\nFRET INTERACTIONS:\n  Orco--Orco\n  Orco--Orco\n\nPCA INTERACTIONS:\n  Orco--Orco\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg\n- Network density: approximately 0.73\n- Hub proteins (highly connected): smo, Egfr\n- Total interactions: approximately 33"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg\n\nTWO-HYBRID INTERACTIONS:\n  CG7200--eRF1\n  DnaJ-1--Sap47\n  DnaJ-1--eRF1\n  Sap47--eRF1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n  Egfr--arm\n  Egfr--arm\n  smo--smo\n  smo--smo\n  smo--smo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Egfr--eRF1\n  arm--eRF1\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  eRF1--peb\n  eRF1--shn\n  eRF1--wg\n  smo--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Egfr--arm\n  Egfr--arm\n  Egfr--peb\n  eRF1--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo\n- Network density: approximately 0.47\n- Hub proteins (highly connected): GstE3, tamo\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo\n\nTWO-HYBRID INTERACTIONS:\n  GATAe--GstE3\n  GstE3--tamo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2025--GstE3\n  GstE3--GstT1\n  GstE3--RhoGDI\n  GstT1--RhoGDI\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tamo--tamo\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17698, CG3309, CG34380, bdg, p53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 5 proteins, 3 interactions\n\nNew protein to integrate: CG10426\n\nPredict the interactions for CG10426:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10426--CG17698\n  CG10426--CG3309\n  CG10426--CG34380\n  CG10426--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10426--p53"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG9986, Jon66Cii, lama, ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG9986--lama\n  Jon66Cii--lama\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  lama--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 4 proteins, 12 interactions\n\nNew protein to integrate: RASSF8\n\nPredict the interactions for RASSF8:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  RASSF8--RASSF8\n  RASSF8--lama"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, pav, phl, tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--Dsor1\n  14-3-3epsilon--phl\n  14-3-3zeta--Dsor1\n  14-3-3zeta--phl\n  Dsor1--phl\n  Dsor1--phl\n  pav--tum\n  pav--tum\n  pav--tum\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  phl--tum\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--phl\n  pav--tum\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  pav--tum\n  pav--tum\n  pav--tum\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n\nTWO-HYBRID INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  pav--tum\n  pav--tum\n  pav--tum\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n  pav--tum\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n  pav--tum\n\nNETWORK SUMMARY: 8 proteins, 38 interactions\n\nNew protein to integrate: nesd\n\nPredict the interactions for nesd:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Mlp84B--nesd\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gl--nesd\n  nesd--pav\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nesd--pav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  nesd--pav\n  nesd--phl\n  nesd--tum\n  nesd--tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--nesd\n  14-3-3zeta--nesd\n  Dsor1--nesd\n  nesd--pav\n  nesd--pav\n  nesd--tum\n  nesd--tum"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Jwa, alphaCOP, epsilonCOP, fra, rti\n- Network density: approximately 0.80\n- Hub proteins (highly connected): rti, epsilonCOP\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jwa, alphaCOP, epsilonCOP, fra, rti\n\nTWO-HYBRID INTERACTIONS:\n  Jwa--epsilonCOP\n  alphaCOP--epsilonCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaCOP--rti\n  fra--fra\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  alphaCOP--rti\n  epsilonCOP--fra\n  epsilonCOP--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG7564--CG9098\n  CG7564--x16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7564--Vap-33A\n  foxo--rictor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  foxo--rictor\n  foxo--rictor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--S6kII\n  CG7564--foxo\n  CG7564--gig\n  CG7564--rictor\n  S6kII--gig\n  Vap-33A--rictor\n  rictor--x16\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7564--x16\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG11322--CG12470\n  CG11322--CG3704\n  CG11322--CG3919\n  CG11322--Cpr50Ca\n  CG11322--Moe\n  CG11322--RpS7\n  CG3919--CG3919\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG11164--CG11322\n  CG11322--CG12470\n  CG11322--CG3704\n  CG11322--CG3919\n  CG11322--Cpr50Ca\n  CG11322--Moe\n  CG11322--Plzf\n  CG11322--RpS7\n  CG3919--CG3919\n  Moe--Moe\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg\n\nTWO-HYBRID INTERACTIONS:\n  CG2199--Hrb27C\n  CG2199--Rb97D\n  Hrb27C--Rb97D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10777--Rb97D\n  CG10777--ZAP3\n  CG43444--Rb97D\n  CG43444--ZAP3\n  CG43444--vkg\n  Rb97D--ZAP3\n  Rb97D--vkg\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n- Network density: approximately 0.39\n- Hub proteins (highly connected): l(2)k10201, Rel\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n\nTWO-HYBRID INTERACTIONS:\n  C15--Hr78\n  C15--l(2)k10201\n  CG15443--l(2)k10201\n  CG18262--l(2)k10201\n  CG6272--Hr78\n  CG6272--l(2)k10201\n  Ets65A--l(2)k10201\n  Hr78--Rel\n  Hr78--l(2)k10201\n  Rel--Rel\n  Rel--l(2)k10201\n  Sesn--l(2)k10201\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n- Network density: approximately 0.22\n- Hub proteins (highly connected): robl22E, CAP\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n\nTWO-HYBRID INTERACTIONS:\n  CAP--robl22E\n  CG14965--robl22E\n  CG17470--robl22E\n  CG30409--robl22E\n  CG4198--robl22E\n  H2.0--robl22E\n  Idgf4--robl22E\n  Prosbeta3--robl22E\n  robl22E--whd\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5783, Cul1, PI31, Prosalpha7, Vsx2, ntc, skpA, skpB, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG5783--ntc\n  PI31--PI31\n  PI31--ntc\n  Vsx2--ntc\n  ntc--skpA\n  ntc--skpB\n  ntc--skpF\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cul1--skpA\n  Cul1--skpB\n  PI31--Prosalpha7\n  PI31--ntc\n  skpA--skpB\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cul1--Cul1\n  Cul1--ntc\n  Cul1--skpA\n  PI31--Prosalpha7\n  PI31--Prosalpha7\n  PI31--ntc\n  Prosalpha7--ntc\n  ntc--skpA\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--CG6310\n  CG15168--CG6310\n  CG1746--CG6310\n  CG30472--CG6310\n  CG6310--Eaat1\n  CG6310--RpS26\n  CG6310--Tim17b2\n  CG6310--fax\n  CG6310--ninaD\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11762, CG15042, Gp150, Nup98-96, spo, spok\n\nTWO-HYBRID INTERACTIONS:\n  CG15042--spo\n  Nup98-96--spo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG11762--spo\n  spo--spok\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11762, CG15042, Gp150, Nup98-96, spo, spok\n\nTWO-HYBRID INTERACTIONS:\n  CG15042--spo\n  Gp150--spo\n  Nup98-96--spo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG11762--spo\n  spo--spok\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, sip1\n\nTWO-HYBRID INTERACTIONS:\n  CG3713--CG6425\n  CG3880--CG6425\n  CG6425--CHIP\n  CG6425--Cpr47Ea\n  CG6425--CycK\n  CG6425--Scp2\n  CG6425--Taz\n  CG6425--sip1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  Scp2--Scp2\n  Scp2--Scp2\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: nonA-l\n\nPredict the interactions for nonA-l:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6425--nonA-l"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs\n\nTWO-HYBRID INTERACTIONS:\n  CG10237--CG6180\n  CG10237--CG9796\n  CG10237--CG9825\n  CG10237--cbs\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10237--CG2254\n  CG10237--CG34205\n  CG10237--CG7979\n  CG10237--Pli\n  CG34205--CG7979\n  CG34205--Pli\n  CG7979--Pli\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pli--Pli\n\nPCA INTERACTIONS:\n  CG2254--CG2254\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10237--Tom20\n  CG6180--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14968, CG16817, Chd64\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14968--CG16817\n  CG14968--Chd64\n  CG16817--Chd64\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: Cht9\n\nPredict the interactions for Cht9:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14968--Cht9"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai\n\nTWO-HYBRID INTERACTIONS:\n  CG11474--CG5149\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Atg8a--CG11474\n  Atg8a--Su(var)205\n  CG11474--CG17746\n  CG11474--Su(var)205\n  CG11474--stai\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8a, CG11474, CG17746, CG5149, CG7737, Su(var)205, stai\n\nTWO-HYBRID INTERACTIONS:\n  CG11474--CG5149\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Atg8a--CG11474\n  Atg8a--Su(var)205\n  CG11474--CG17746\n  CG11474--CG7737\n  CG11474--Su(var)205\n  CG11474--stai\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10366, CG10494, VhaAC39-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10366--CG10494\n  CG10366--VhaAC39-1\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG6693\n\nPredict the interactions for CG6693:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10366--CG6693"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11523, Tom20, zuc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 3 proteins, 6 interactions\n\nNew protein to integrate: CG9791\n\nPredict the interactions for CG9791:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11523--CG9791\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG9791--Tom20\n  CG9791--zuc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11409, Med, gbb, sax, spict, tkv, wit"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, Med, gbb, sax, spict, tkv, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--spict\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  sax--tkv\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--gbb\n  Med--sax\n  Med--spict\n  Med--tkv\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--spict\n  gbb--tkv\n  gbb--tkv\n  sax--spict\n  sax--tkv\n  spict--tkv\n  spict--wit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gbb--gbb\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--tkv\n  sax--sax\n  sax--tkv\n  sax--tkv\n  spict--wit\n  spict--wit\n  tkv--tkv\n\nCO-FRACTIONATION INTERACTIONS:\n  gbb--gbb\n\nNETWORK SUMMARY: 7 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG6733\n  CG12521--CG6733\n  CG17652--CG6733\n  CG31731--CG6733\n  CG6733--Hip1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21\n\nTWO-HYBRID INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FMR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--GRIP2\n  FXR1--FXR1\n  FXR1--GRIP2\n  GFI1B--GRIP2\n  GIT1--GIT1\n  GIT1--PPFIA1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FMR1--FXR1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  ERC2--GRIP2\n  FMR1--FMR1\n  GIT1--GRIP2\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GRIP2--PPFIA1\n  TRIM21--TRIM21\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  FMR1--KRAS\n  GRIP2--KRAS\n  KRAS--KRAS\n\nPOSITIVE GENETIC INTERACTIONS:\n  GFI1B--GFI1B\n\nFRET INTERACTIONS:\n  KRAS--KRAS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  KRAS--KRAS\n  KRAS--KRAS\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--RNF8\n  KRAS--PPFIA1\n  KRAS--PPFIA1\n\nNEGATIVE GENETIC INTERACTIONS:\n  KRAS--KRAS\n\nNETWORK SUMMARY: 10 proteins, 39 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21\n\nTWO-HYBRID INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FMR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--GRIP2\n  FXR1--FXR1\n  FXR1--GRIP2\n  GFI1B--GRIP2\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FXR1\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  PPFIA1--PPFIA1\n  PPFIA1--PPFIA1\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  ERC2--GRIP2\n  ERC2--PPFIA1\n  ERC2--PPFIA1\n  FMR1--FMR1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GRIP2\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GRIP2--PPFIA1\n  GRIP2--PPFIA1\n  TRIM21--TRIM21\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RNF8--RNF8\n  RNF8--RNF8\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nCO-PURIFICATION INTERACTIONS:\n  FMR1--FXR1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--TRIM21\n  KRAS--KRAS\n  KRAS--KRAS\n  RNF8--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  FMR1--KRAS\n  GRIP2--KRAS\n  KRAS--KRAS\n\nPOSITIVE GENETIC INTERACTIONS:\n  GFI1B--GFI1B\n\nFRET INTERACTIONS:\n  KRAS--KRAS\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--RNF8\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--PPFIA1\n  KRAS--PPFIA1\n\nNEGATIVE GENETIC INTERACTIONS:\n  KRAS--KRAS\n\nPCA INTERACTIONS:\n  KRAS--KRAS\n\nNETWORK SUMMARY: 10 proteins, 83 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10948, CG6763, Ppn, gammaSnap1\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG6763, gammaSnap1\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10948, CG6763, Ppn, gammaSnap1\n\nTWO-HYBRID INTERACTIONS:\n  CG10948--CG6763\n  CG6763--Ppn\n  CG6763--gammaSnap1\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3499, CG4335, Tig, ci, pgant3\n- Network density: approximately 0.80\n- Hub proteins (highly connected): ci, Tig\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3499, CG4335, Tig, ci, pgant3\n\nTWO-HYBRID INTERACTIONS:\n  CG3499--Tig\n  CG4335--CG4335\n  CG4335--Tig\n  Tig--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Tig--pgant3\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12860, NimC1, park, sick\n\nTWO-HYBRID INTERACTIONS:\n  CG12860--NimC1\n  CG12860--park\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  park--park\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  park--park\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12860, NimC1, park, sick\n\nTWO-HYBRID INTERACTIONS:\n  CG12860--NimC1\n  CG12860--park\n  CG12860--sick\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  park--park\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  park--park\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10924, CG30409, Pvf1, Roc2, robl22E, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG10924--CG30409\n  CG30409--Pvf1\n  CG30409--Roc2\n  CG30409--spir\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10924, CG30409, Pvf1, Roc2, robl22E, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG10924--CG30409\n  CG30409--Pvf1\n  CG30409--Roc2\n  CG30409--robl22E\n  CG30409--spir\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib\n- Network density: approximately 0.82\n- Hub proteins (highly connected): Traf6, egr\n- Total interactions: approximately 37"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib\n\nTWO-HYBRID INTERACTIONS:\n  CG10176--CG5676\n  CG10176--Cpr50Cb\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--CG8184\n  CG10176--Syx7\n  CG10176--crb\n  CG10176--egr\n  CG10176--hep\n  CG10176--scrib\n  CG8184--Traf6\n  CG8184--egr\n  Syx7--hep\n  Traf6--egr\n  Traf6--egr\n  Traf6--egr\n  crb--scrib\n  crb--scrib\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--scrib\n  egr--scrib\n  egr--scrib\n  hep--scrib\n  hep--scrib\n  hep--scrib\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  crb--scrib\n  egr--scrib\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10176--Traf6\n  CG10176--egr\n  CG10176--egr\n  Traf6--Traf6\n  scrib--scrib\n\nNETWORK SUMMARY: 10 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  M1BP--M1BP\n  Mer--Mer\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mer--Snr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mer--Mer\n  Mer--Mer\n\nNETWORK SUMMARY: 9 proteins, 6 interactions\n\nNew protein to integrate: l(3)L1231\n\nPredict the interactions for l(3)L1231:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11134--l(3)L1231\n  CG14062--l(3)L1231\n  CR18854--l(3)L1231\n  M1BP--l(3)L1231\n  Mer--l(3)L1231\n  RpS21--l(3)L1231\n  Snr1--l(3)L1231\n  Sry-alpha--l(3)L1231\n  betaggt-II--l(3)L1231"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG13871--Fip1\n  Clp--Fip1\n  Fip1--Myo10A\n  Fip1--Myo10A\n  Fip1--Neto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Clp--CstF-64\n  CstF-64--Fip1\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--Fip1\n  CG13871--Fip1\n  CG9975--Fip1\n  Clp--Fip1\n  Fip1--Myo10A\n  Fip1--Myo10A\n  Fip1--Neto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fip1--Myo10A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Clp--CstF-64\n  CstF-64--Fip1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2\n\nTWO-HYBRID INTERACTIONS:\n  CDHR2--MAST2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDHR2--MAST2\n\nCO-LOCALIZATION INTERACTIONS:\n  CDHR2--MAST2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RPS6KA2--RPS6KA2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--HIP1R\n  CDHR2--LAMB1\n  CDHR2--NF1\n  CDHR2--RPS6KA2\n  CDHR2--SURF1\n  CDHR2--TBCD\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD, TMTC2\n\nTWO-HYBRID INTERACTIONS:\n  CDHR2--MAST2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDHR2--MAST2\n\nCO-LOCALIZATION INTERACTIONS:\n  CDHR2--MAST2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RPS6KA2--RPS6KA2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--FBXO2\n  CDHR2--HIP1R\n  CDHR2--LAMB1\n  CDHR2--NF1\n  CDHR2--RPS6KA2\n  CDHR2--SURF1\n  CDHR2--TBCD\n  CDHR2--TMTC2\n  FBXO2--LAMB1\n  RPS6KA2--RPS6KA2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3\n\nTWO-HYBRID INTERACTIONS:\n  CG2199--Hrb27C\n  CG2199--Rb97D\n  Hrb27C--Rb97D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10777--Rb97D\n  CG10777--ZAP3\n  CG43444--Rb97D\n  CG43444--ZAP3\n  Rb97D--ZAP3\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: vkg\n\nPredict the interactions for vkg:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG43444--vkg\n  Rb97D--vkg"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5110, Dpy-30L2, Dsor1, Rm62, corto, rl\n\nTWO-HYBRID INTERACTIONS:\n  CG5110--Dpy-30L2\n  CG5110--Rm62\n  CG5110--corto\n  Rm62--Rm62\n  corto--corto\n  rl--rl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dsor1--rl\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dsor1--rl\n  Dsor1--rl\n  Dsor1--rl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5110--Dsor1\n  CG5110--corto\n  CG5110--rl\n  CG5110--rl\n  Dsor1--rl\n  Rm62--Rm62\n  corto--corto\n  corto--rl\n  corto--rl\n\nCO-LOCALIZATION INTERACTIONS:\n  Dsor1--rl\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 6 proteins, 21 interactions\n\nNew protein to integrate: CG5189\n\nPredict the interactions for CG5189:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5110--CG5189\n  CG5110--CG5189"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG45057, CTPsyn, Trs33, Vha13, Vha26, fu, lace\n\nTWO-HYBRID INTERACTIONS:\n  CG45057--Vha13\n  CTPsyn--CTPsyn\n  Trs33--Vha13\n  Vha13--Vha26\n  Vha13--Vha26\n  Vha13--fu\n  Vha13--fu\n  Vha13--lace\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--Vha13\n\nNETWORK SUMMARY: 7 proteins, 14 interactions\n\nNew protein to integrate: Mitf\n\nPredict the interactions for Mitf:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mitf--Vha13\n  Mitf--Vha26"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11249, CG3942, robl62A, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG11249--CG3942\n  CG11249--robl62A\n  CG11249--sol\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG11380\n\nPredict the interactions for CG11380:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11249--CG11380"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10298, Mf, rec, rti\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG10298, rti\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, Mf, rec, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--Mf\n  CG10298--rec\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10298--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns\n- Network density: approximately 0.27\n- Hub proteins (highly connected): Mdr65, sns\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns\n\nTWO-HYBRID INTERACTIONS:\n  CG12020--Mdr65\n  CG12470--Mdr65\n  CG12470--Neto\n  CG4328--Mdr65\n  Mdr65--Neto\n  Mdr65--RpS11\n  Mdr65--Ubqn\n  Mdr65--sns\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--eas\n  Mdr65--para\n  eas--para\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sns--sns\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG9825, Stat92E, dome, et, os, tub\n\nTWO-HYBRID INTERACTIONS:\n  CG9825--et\n  et--tub\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  dome--os\n  et--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--et\n  Stat92E--et\n  dome--dome\n  dome--dome\n  dome--et\n  dome--et\n  dome--et\n  dome--os\n  dome--os\n  et--et\n\nPCA INTERACTIONS:\n  dome--dome\n  dome--dome\n  dome--dome\n\nNETWORK SUMMARY: 6 proteins, 33 interactions\n\nNew protein to integrate: hop\n\nPredict the interactions for hop:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--hop\n  dome--hop\n  hop--os\n  hop--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  dome--hop\n  et--hop\n  hop--os\n  hop--os\n  hop--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--hop\n  dome--hop\n  dome--hop\n  et--hop\n  et--hop"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10483, CG12470, Cka, Mob4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10483, CG12470, Cka, Mob4\n\nTWO-HYBRID INTERACTIONS:\n  CG10483--CG12470\n  CG10483--Cka\n  CG10483--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n  Cka--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cka--Mob4\n  Cka--Mob4\n\nNETWORK SUMMARY: 4 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2\n- Network density: approximately 0.43\n- Hub proteins (highly connected): CG15514, Best2\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG15514, CG30428, CG8833, PHDP, PebIII, Sc2\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG15514\n  Best2--CG30428\n  Best2--CG8833\n  Best2--PHDP\n  Best2--PebIII\n  Best2--Sc2\n  CG15514--CG15514\n  CG15514--CG15514\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG15514--CG15514\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Blos2, CG13005, CG13526, CG14868, CG14931, CG7911, CG8173, Rcc1, scu\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG13005\n  CG13005--CG13526\n  CG13005--CG14868\n  CG13005--CG14931\n  CG13005--CG7911\n  CG13005--CG8173\n  CG13005--Rcc1\n  CG13005--scu\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG33017\n\nPredict the interactions for CG33017:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13005--CG33017\n  CG33017--scu"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10948, CG6763, Ppn, gammaSnap1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10948, CG6763, Ppn, gammaSnap1\n\nTWO-HYBRID INTERACTIONS:\n  CG10948--CG6763\n  CG6763--Ppn\n  CG6763--gammaSnap1\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Act5C, CG14579, Rab11, Rab4, spir\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG14579, Act5C\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG14579, Rab11, Rab4, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG14579--spir\n\nCO-FRACTIONATION INTERACTIONS:\n  Act5C--spir\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Act5C--spir\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Act5C--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Act5C--CG14579\n  Act5C--Rab11\n  CG14579--Rab11\n  CG14579--Rab11\n  CG14579--Rab4\n  Rab11--Rab4\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--thoc7\n  CG15071--thoc7\n  DNApol-epsilon--thoc7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18619--thoc7\n  Hpr1--tex\n  Hpr1--thoc7\n  Hpr1--thoc7\n  tex--thoc7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15071, CG18619, CG32809, DNApol-epsilon, Hpr1, beag, dm, tex, thoc7\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--thoc7\n  CG15071--CG15071\n  CG15071--thoc7\n  CG32809--thoc7\n  DNApol-epsilon--thoc7\n  beag--thoc7\n  dm--thoc7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18619--thoc7\n  Hpr1--tex\n  Hpr1--thoc7\n  Hpr1--thoc7\n  tex--thoc7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7208, CG7967, Dlc90F, alphaKap4, lush\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--Dlc90F\n  CG7208--alphaKap4\n  CG7208--lush\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7208, CG7967, Dlc90F, alphaKap4, lush\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--CG7967\n  CG7208--Dlc90F\n  CG7208--alphaKap4\n  CG7208--lush\n  Dlc90F--Dlc90F\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG11523, sgg\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG30122\n  CG11523--CG42389\n  CG11523--CG6428\n  CG11523--CG9791\n  CG11523--Hsc70-4\n  CG11523--bif\n  CG30122--CG30122\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11523--CG4325\n  CG11523--rti\n  CG11523--sgg\n  CG11523--sgg\n  CG11523--sgg\n  CG4325--sgg\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, prd, slif\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG42676\n  CG11164--CG42676\n  CG15631--CG42676\n  CG15631--CG5376\n  CG3548--CG3548\n  CG42676--CG5376\n  CG42676--prd\n  CG42676--slif\n  CG5376--CG5376\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3548--CG42676\n\nNETWORK SUMMARY: 8 proteins, 10 interactions\n\nNew protein to integrate: Su(dx)\n\nPredict the interactions for Su(dx):"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42676--Su(dx)\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n- Network density: approximately 0.47\n- Hub proteins (highly connected): su(w[a]), polo\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14323, CG31211, CG31550, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n\nTWO-HYBRID INTERACTIONS:\n  CG14323--CG31211\n  CG14323--su(w[a])\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--su(w[a])\n  CG31550--su(w[a])\n  CG5343--su(w[a])\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  su(w[a])--w\n  su(w[a])--w\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5343--rictor\n  rictor--su(w[a])\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  polo--polo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  eIF4AIII--su(w[a])\n  mago--su(w[a])\n\nFRET INTERACTIONS:\n  polo--polo\n\nPROTEIN-RNA INTERACTIONS:\n  polo--su(w[a])\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG18522--dar1\n  CG18522--hale\n  CG31955--dar1\n  CG5674--dar1\n  CG5674--hale\n  Mst87F--dar1\n  Mst87F--hale\n  dar1--hale\n  hale--hale\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dar1--kn\n  dar1--nudE\n  dar1--sw\n\nCO-FRACTIONATION INTERACTIONS:\n  kn--kn\n  nudE--sw\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  nudE--sw\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n- Network density: approximately 0.61\n- Hub proteins (highly connected): Traf6, CG9577\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG4447--CG9577\n  CG9577--CG9577\n  CG9577--Traf6\n  CG9577--Trs31\n  Leash--Leash\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Leash\n  CG9577--Rab6\n  CG9577--Su(P)\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG4447--Tom20\n  CG9577--Tom20\n  CG9577--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DDX58, LMO2, LYL1, NFKB1, NFKBIA, RHOU, TAL1, TCF3, TCF4, TRIM33\n\nTWO-HYBRID INTERACTIONS:\n  LMO2--LMO2\n  LMO2--LMO2\n  LMO2--LYL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  LYL1--TCF4\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TRIM33\n  LMO2--TRIM33\n  LYL1--TAL1\n  LYL1--TRIM33\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TCF4\n  TAL1--TRIM33\n  TCF3--TCF3\n  TCF3--TCF4\n  TCF3--TCF4\n  TCF3--TRIM33\n  TCF4--TRIM33\n  TCF4--TRIM33\n  TRIM33--TRIM33\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--NFKBIA\n  LYL1--RHOU\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n  TCF3--TCF3\n  TRIM33--TRIM33\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  LMO2--TAL1\n  LMO2--TAL1\n  LMO2--TAL1\n  LYL1--NFKB1\n  LYL1--TCF3\n  NFKB1--NFKB1\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  NFKB1--NFKBIA\n  TAL1--TAL1\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TCF3\n  TAL1--TRIM33\n  TAL1--TRIM33\n  TRIM33--TRIM33\n\nCO-LOCALIZATION INTERACTIONS:\n  NFKB1--NFKB1\n\nCO-FRACTIONATION INTERACTIONS:\n  NFKB1--NFKBIA\n  TCF3--TCF3\n\nFRET INTERACTIONS:\n  TCF3--TCF3\n\nAFFINITY CAPTURE-LUMINESCENCE INTERACTIONS:\n  NFKB1--NFKB1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--LYL1\n  DDX58--TCF3\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NFKB1--NFKBIA\n  NFKBIA--NFKBIA\n  TAL1--TCF3\n  TAL1--TCF4\n\nNETWORK SUMMARY: 10 proteins, 112 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx\n\nTWO-HYBRID INTERACTIONS:\n  CG13623--Lap1\n  CG9254--Lap1\n  Lap1--Not1\n  Lap1--ssx\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13623, CG2233, CG9254, Lap1, Not1, RpL12, ssx\n\nTWO-HYBRID INTERACTIONS:\n  CG13623--Lap1\n  CG2233--Lap1\n  CG9254--Lap1\n  Lap1--Not1\n  Lap1--RpL12\n  Lap1--ssx\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG11985, CG16941, CG5514, Ndc80, Nuf2, Prp31, dar1, noi, snf\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--CG5514\n  CG10754--dar1\n  CG16941--noi\n  Ndc80--Nuf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10754--CG11985\n  CG10754--CG16941\n  CG10754--noi\n  CG10754--snf\n  CG11985--CG16941\n  CG11985--noi\n  CG11985--snf\n  CG11985--snf\n  CG16941--noi\n  CG16941--snf\n  Ndc80--Nuf2\n  Ndc80--Nuf2\n  noi--snf\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  snf--snf\n\nCO-FRACTIONATION INTERACTIONS:\n  snf--snf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10754--Ndc80\n  CG10754--Ndc80\n  CG10754--Nuf2\n  CG10754--Prp31\n  CG10754--Prp31\n  Ndc80--Prp31\n  Ndc80--Prp31\n  Nuf2--Prp31\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13159, CG33213, Hakai, Mlp84B, Or98b\n\nNETWORK SUMMARY: 5 proteins, 0 interactions\n\nNew protein to integrate: CG17440\n\nPredict the interactions for CG17440:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13159--CG17440\n  CG17440--CG33213\n  CG17440--Hakai\n  CG17440--Mlp84B\n  CG17440--Or98b"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG3342--CG3342\n  CG3342--CG3342\n  REG--REG\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp22--Hsp23\n  Hsp22--Hsp27\n  Hsp23--Hsp27\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG18004\n\nPredict the interactions for CG18004:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG18004--CG3342\n  CG18004--Rad51D\n  CG18004--sinah\n  CG18004--vari\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18004--Hsp22\n  CG18004--Hsp23\n  CG18004--Hsp27\n  CG18004--Mocs1\n  CG18004--REG"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11409, CG33056, CG5555, Hrb27C, betaTub56D\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG33056--CG5555\n  CG5555--CG5555\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33056--Hrb27C\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG5555, Hrb27C, betaTub56D\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG33056--CG5555\n  CG5555--CG5555\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33056--Hrb27C\n  CG33056--betaTub56D\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, mgr, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG10252--CG3792\n  CG10252--CG44251\n  CG10252--D1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10252--CG7770\n  CG10252--CG8292\n  CG10252--mgr\n  CG10252--rti\n  CG7770--mgr\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mgr--mgr\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: Zyx\n\nPredict the interactions for Zyx:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10252--Zyx"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11164, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG5149\n  CG15365--CG5149\n  CG15631--CG5149\n  CG5149--CG6287\n  CG5149--CG8449\n  CG5149--CG8635\n  CG5149--His2A:CG31618\n  CG5149--eIF-5A\n\nPCA INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG11474\n\nPredict the interactions for CG11474:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11474--CG5149"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG4576, FucTB, Or45a, Ref1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4576, FucTB, Or45a, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG4576--Or45a\n  FucTB--Or45a\n  Or45a--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1943--CG33672\n  CG1943--PGRP-LE\n  CG1943--PHDP\n  CG1943--Vsx2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-FRACTIONATION INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Tom20--Tom20\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11320, CG1943, CG33672, PGRP-LE, PHDP, Tom20, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  PGRP-LE--PGRP-LE\n  PGRP-LE--PGRP-LE\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1943--CG33672\n  CG1943--PGRP-LE\n  CG1943--PHDP\n  CG1943--Vsx2\n  PGRP-LE--PGRP-LE\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nCO-FRACTIONATION INTERACTIONS:\n  PGRP-LE--PGRP-LE\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1943--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Rcd7, jbug, rb\n\nTWO-HYBRID INTERACTIONS:\n  Rcd7--jbug\n  Rcd7--rb\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Lcp2\n\nPredict the interactions for Lcp2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Lcp2--Rcd7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11412, CG4065, CG5919, Jupiter\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG11412, CG4065\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5919, Jupiter\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG11412--CG5919\n  CG11412--Jupiter\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt\n- Network density: approximately 0.28\n- Hub proteins (highly connected): CG14354, Sgt\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG13962--CG14354\n  CG14354--CG15638\n  CG14354--CG4229\n  CG14354--CG6520\n  CG14354--CG9986\n  CG14354--Lcp2\n  CG14354--Sgt\n  CG9986--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba\n- Network density: approximately 0.29\n- Hub proteins (highly connected): GstE1, FER\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--GstE1\n  CG10914--GstE1\n  CG11964--GstE1\n  CG15602--GstE1\n  CG8206--GstE1\n  FER--GstE1\n  GstE1--cnc\n  GstE1--kermit\n  GstE1--sba\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  FER--FER\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FER--FER\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--sba\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Adf1, CG10209, CG14818, CG5516, Lim1, Nup54, Rheb, Tm1, dgrn, l(2)06496\n\nTWO-HYBRID INTERACTIONS:\n  Adf1--Adf1\n  Adf1--CG5516\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG5516\n  CG14818--CG5516\n  CG14818--Nup54\n  CG5516--Lim1\n  CG5516--Nup54\n  CG5516--Tm1\n  CG5516--dgrn\n  CG5516--l(2)06496\n  Tm1--Tm1\n  Tm1--dgrn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5516--Rheb\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Adf1--Adf1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rheb--Rheb\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13321, CG15337, CG3062, Noa36, Traf-like"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13321, CG15337, CG3062, Noa36, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG13321--CG3062\n  CG15337--CG3062\n  CG3062--Noa36\n  CG3062--Traf-like\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12728, CG32756, CG4218, dgrn"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12728, CG32756, CG4218, dgrn\n\nTWO-HYBRID INTERACTIONS:\n  CG12728--CG4218\n  CG32756--CG4218\n  CG4218--dgrn\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11134, CG30089, Su(dx), l(3)L1231, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--Su(dx)\n  CG11134--l(3)L1231\n  CG30089--yki\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG30089, Su(dx), l(3)L1231, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--Su(dx)\n  CG11134--l(3)L1231\n  CG11134--yki\n  CG30089--yki\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11404, CG1275\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta\n\nTWO-HYBRID INTERACTIONS:\n  Bsg--CG11404\n  CG11269--CG11404\n  CG11404--CG1275\n  CG11404--Desi\n  CG11404--SsRbeta\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10749, CG14210, Lin29, Patronin, RpLP1\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG14210, CG10749\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG14210, Lin29, Patronin, RpLP1\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG14210\n  CG14210--Lin29\n  CG14210--Patronin\n  CG14210--RpLP1\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG10589--Phm\n  Hey--Phm\n  Met75Ca--Phm\n  Met75Cb--Phm\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG10589--Phm\n  CG9986--Phm\n  Hey--Phm\n  Met75Ca--Phm\n  Met75Cb--Phm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Phm--nej\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12024, CG12428, CG3529, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n\nTWO-HYBRID INTERACTIONS:\n  CG12428--CG3529\n  CG3529--MED8\n  CG3529--NC2alpha\n  CG3529--Syx7\n  CG3529--Wbp2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12024--CG3529\n  CG3529--jar\n  CG3529--osk\n  MED8--MED8\n  jar--osk\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG3529--jar\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG9795\n\nPredict the interactions for CG9795:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3529--CG9795"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--CG3281\n  CG12470--CG8159\n  CG12470--esn\n  CG3281--CG8159\n  CG3281--esn\n  CG7386--fs(2)ltoPP43\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3281--RpL18A\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--CG3281\n  CG12470--CG8159\n  CG12470--esn\n  CG3281--CG7386\n  CG3281--CG8159\n  CG3281--esn\n  CG3281--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  CG8159--CG8159\n  CG8159--CG8159\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3281--RpL18A\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10663, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10663--Ef1alpha48D\n  CG10663--His3.3B\n  CG10663--Pax\n  CG10663--Syp\n  CG10663--geminin\n  CG10663--lcs\n  Rtnl1--Rtnl1\n  geminin--geminin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10663--Rtnl1\n  Rtnl1--Rtnl1\n  Rtnl1--Syp\n  Rtnl1--Syp\n\nNETWORK SUMMARY: 8 proteins, 12 interactions\n\nNew protein to integrate: CG2199\n\nPredict the interactions for CG2199:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10663--CG2199"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG13168--CG15423\n  CG13168--CG15549\n  CG13168--CG15578\n  CG13168--CG15919\n  CG13168--hoe1\n\nNETWORK SUMMARY: 7 proteins, 6 interactions\n\nNew protein to integrate: HP6\n\nPredict the interactions for HP6:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13168--HP6"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG18135, CG8292\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG18135\n  CG10979--CG18135\n  CG18135--CG8292\n  CG18135--Myo10A\n  CG18135--Ppn\n  CG18135--RpS2\n  CG18135--Snr1\n  CG18135--Socs36E\n  CG18135--Srp68\n  CG8292--Ppn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18135--Myo10A\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash\n- Network density: approximately 1.13\n- Hub proteins (highly connected): Dref, wash\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13957, Dref, Leash, Trf2, l(2)37Cg, wash\n\nTWO-HYBRID INTERACTIONS:\n  CG13957--l(2)37Cg\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dref--Trf2\n  Dref--Trf2\n  wash--wash\n  wash--wash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13957--Dref\n  CG13957--Leash\n  CG13957--Trf2\n  CG13957--wash\n  Dref--Dref\n  Dref--Trf2\n  Leash--wash\n  Trf2--wash\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dref--Trf2\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Anp, CG11576, CG7910, Pp2A-29B\n\nTWO-HYBRID INTERACTIONS:\n  Anp--CG7910\n  CG11576--CG7910\n  CG7910--Pp2A-29B\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CSN8\n\nPredict the interactions for CSN8:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7910--CSN8"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n- Network density: approximately 0.47\n- Hub proteins (highly connected): Sxl, CG6950\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11148, CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n\nTWO-HYBRID INTERACTIONS:\n  CG11148--CG6950\n  CG42388--CG6950\n  CG6950--Cyp6a19\n  CG6950--Or59c\n  CG6950--Rack1\n  CG6950--RpLP1\n  CG6950--Sxl\n  CG6950--Tom7\n  Rack1--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nPCA INTERACTIONS:\n  CG42388--CG42388\n\nCO-FRACTIONATION INTERACTIONS:\n  Rack1--RpLP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6950--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Obp58c, ScpX, ref(2)P\n\nTWO-HYBRID INTERACTIONS:\n  Obp58c--ScpX\n  ScpX--ref(2)P\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ref(2)P--ref(2)P\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: CG32486\n\nPredict the interactions for CG32486:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG32486--CG32486\n  CG32486--ScpX\n  CG32486--ScpX"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG6972, CG7046\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG6972\n  CG13032--CG17666\n  CG13032--CG6972\n  CG17666--CG6972\n  CG3213--CG6972\n  CG6972--CG7046\n  CG6972--HLH4C\n  CG6972--Lim3\n  CG6972--Rbp\n  CG6972--TFAM\n  HLH4C--Lim3\n\nPCA INTERACTIONS:\n  CG7046--CG7046\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11409, Med, gbb, sax, spict, tkv, wit\n- Network density: approximately 1.67\n- Hub proteins (highly connected): gbb, sax\n- Total interactions: approximately 35"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, Med, gbb, sax, spict, tkv, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--spict\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  sax--tkv\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--gbb\n  Med--sax\n  Med--spict\n  Med--tkv\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--spict\n  gbb--tkv\n  gbb--tkv\n  sax--spict\n  sax--tkv\n  spict--tkv\n  spict--wit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gbb--gbb\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--tkv\n  sax--sax\n  sax--tkv\n  sax--tkv\n  spict--wit\n  spict--wit\n  tkv--tkv\n\nCO-FRACTIONATION INTERACTIONS:\n  gbb--gbb\n\nNETWORK SUMMARY: 7 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ARPC3, CCR10, DDX58, PRRC2A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARPC3, CCR10, DDX58, PRRC2A\n\nTWO-HYBRID INTERACTIONS:\n  ARPC3--CCR10\n  CCR10--PRRC2A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ARPC3--DDX58\n  CCR10--DDX58\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRRC2A--PRRC2A\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15\n\nTWO-HYBRID INTERACTIONS:\n  ATRNL1--DYRK1A\n  ATRNL1--LCOR\n  ATRNL1--MC4R\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATRNL1--HNRNPU\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--DEFB135\n  ATRNL1--FAM19A2\n  ATRNL1--HYOU1\n  ATRNL1--RNF157\n  ATRNL1--ZDHHC15\n  DYRK1A--HNRNPU\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15\n\nTWO-HYBRID INTERACTIONS:\n  ATRNL1--DYRK1A\n  ATRNL1--LCOR\n  ATRNL1--MC4R\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DYRK1A--DYRK1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--DEFB135\n  ATRNL1--FAM19A2\n  ATRNL1--HYOU1\n  ATRNL1--RNF157\n  ATRNL1--ZDHHC15\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--HNRNPU\n  DYRK1A--HYOU1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATRNL1--HNRNPU\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HNRNPU--HNRNPU\n  HNRNPU--HNRNPU\n  HYOU1--HYOU1\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  CG11320--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--CG11320\n  CG10824--CG11320\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr4\n  CG10824--dpr4\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG11320--dpr\n  CG11320--dpr\n  dpr3--dpr7\n  dpr3--dpr7\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr\n  CG11320--dpr2\n  CG11320--dpr3\n  CG11320--dpr4\n  CG11320--dpr5\n  CG11320--dpr7\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n\nTWO-HYBRID INTERACTIONS:\n  C15--Hr78\n  CG15443--l(2)k10201\n  CG18262--l(2)k10201\n  CG6272--Hr78\n  CG6272--l(2)k10201\n  Hr78--Rel\n  Hr78--l(2)k10201\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n\nTWO-HYBRID INTERACTIONS:\n  C15--Hr78\n  C15--l(2)k10201\n  CG15443--l(2)k10201\n  CG18262--l(2)k10201\n  CG6272--Hr78\n  CG6272--l(2)k10201\n  Ets65A--l(2)k10201\n  Hr78--Rel\n  Hr78--l(2)k10201\n  Rel--Rel\n  Rel--l(2)k10201\n  Sesn--l(2)k10201\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7879, CG8407, Cpr73D, ko\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG8407, ko\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7879, CG8407, Cpr73D, ko\n\nTWO-HYBRID INTERACTIONS:\n  CG7879--CG8407\n  CG8407--Cpr73D\n  CG8407--ko\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--CG15578\n  CG11275--Chi\n  CG11275--Chi\n  CG15578--CG9083\n  CG15578--Chi\n  CG15578--HLH4C\n  CG15578--cp309\n  CG15578--mbo\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--CG15578\n  CG11275--Chi\n  CG11275--Chi\n  CG12995--CG15578\n  CG13168--CG15578\n  CG15578--CG9083\n  CG15578--Chi\n  CG15578--HLH4C\n  CG15578--Trn-SR\n  CG15578--cp309\n  CG15578--mbo\n  cp309--cp309\n  cp309--cp309\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n\nTWO-HYBRID INTERACTIONS:\n  Cks30A--L\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks30A--Skp2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cort\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB3--cdc2\n  CycB3--cdc2\n  Skp2--cdc2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--CycB\n  Cks30A--CycB3\n  Cks30A--cdc2\n  Cks30A--rux\n  Cks85A--CycA\n  Cks85A--CycB\n  Cks85A--CycB3\n  Cks85A--cdc2\n  Cks85A--rux\n  CycA--CycB\n  CycA--CycB3\n  CycA--cdc2\n  CycA--rux\n  CycB--CycB3\n  CycB--cdc2\n  CycB--rux\n  CycB3--cdc2\n  CycB3--rux\n  cdc2--rux\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CycA--cort\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--cort\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--CycB\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycB--cdc2\n  CycB--rux\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks30A--cdc2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n\nNETWORK SUMMARY: 10 proteins, 78 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: BPY2, MAP1S, PPIA, UBE3A\n\nTWO-HYBRID INTERACTIONS:\n  BPY2--MAP1S\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BPY2--MAP1S\n  PPIA--UBE3A\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BPY2, MAP1S, PPIA, UBE3A\n\nTWO-HYBRID INTERACTIONS:\n  BPY2--MAP1S\n  BPY2--UBE3A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BPY2--MAP1S\n  PPIA--PPIA\n  PPIA--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BPY2--UBE3A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  BPY2--PPIA\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PPIA--PPIA\n  PPIA--PPIA\n\nNETWORK SUMMARY: 4 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2993--l(2)37Cb\n  CG31712--regucalcin\n  CG3542--l(2)37Cb\n  GstO3--awd\n  GstO3--l(2)37Cb\n  GstO3--regucalcin\n  KLHL18--l(2)37Cb\n  Sh3beta--awd\n  Sh3beta--l(2)37Cb\n  awd--l(2)37Cb\n  awd--regucalcin\n  l(2)37Cb--regucalcin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  KLHL18--l(2)37Cb\n\nCO-FRACTIONATION INTERACTIONS:\n  awd--awd\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  awd--awd\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--l(2)37Cb\n  awd--awd\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG2993--l(2)37Cb\n  CG31712--CG3542\n  CG31712--GstO3\n  CG31712--l(2)37Cb\n  CG31712--regucalcin\n  CG3542--l(2)37Cb\n  GstO3--Sh3beta\n  GstO3--awd\n  GstO3--l(2)37Cb\n  GstO3--regucalcin\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n  Sh3beta--awd\n  Sh3beta--l(2)37Cb\n  Sh3beta--regucalcin\n  awd--l(2)37Cb\n  awd--regucalcin\n  l(2)37Cb--regucalcin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--l(2)37Cb\n\nCO-FRACTIONATION INTERACTIONS:\n  awd--awd\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  awd--awd\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8, Tim17b2\n\nTWO-HYBRID INTERACTIONS:\n  CG10590--CG11753\n  CG11753--CG17162\n  CG11753--CG40127\n  CG11753--CG9090\n  CG11753--RpS14a\n  CG11753--RpS14b\n  CG11753--RpS8\n  CG11753--Tim17b2\n\nCO-FRACTIONATION INTERACTIONS:\n  RpS14a--RpS14b\n  RpS14a--RpS8\n  RpS14b--RpS8\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3756, RpIII128, l(2)37Cg\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG3756, l(2)37Cg\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3756, RpIII128, l(2)37Cg\n\nTWO-HYBRID INTERACTIONS:\n  CG3756--l(2)37Cg\n  CG3756--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3756--RpIII128\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, CG5862, GEFmeso\n\nTWO-HYBRID INTERACTIONS:\n  CG1104--CG5862\n  CG1104--CG5862\n  CG13445--CG5862\n  CG13461--CG5862\n  CG15459--CG5862\n  CG34191--CG5862\n  CG5862--GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG30291\n  CG1104--CG5862\n  CG30291--CG5862\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8128, Nf-YA, Nf-YB, Nf-YC, phl, sev\n\nTWO-HYBRID INTERACTIONS:\n  CG8128--Nf-YB\n  Nf-YA--Nf-YA\n  Nf-YA--Nf-YC\n  Nf-YB--Nf-YC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YC\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Nf-YA--phl\n  Nf-YA--sev\n  Nf-YB--phl\n  Nf-YB--sev\n\nNETWORK SUMMARY: 6 proteins, 11 interactions\n\nNew protein to integrate: Mes4\n\nPredict the interactions for Mes4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Mes4--Nf-YB"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky\n- Network density: approximately 0.67\n- Hub proteins (highly connected): dl, CG10470\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--CG42369\n  CG10470--dl\n  CG10470--sky\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG1444\n  CG10470--CG14482\n  CG10470--CG33303\n  CG1444--CG14482\n  CG1444--CG33303\n  CG14482--CG33303\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--CG4853\n  Axud1--Pp1alpha-96A\n  Axud1--Prpk\n  Axud1--Spt5\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Axud1--Dcr-2\n  Axud1--puc\n  hep--puc\n  hep--puc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--bsk\n  Axud1--cdc2\n  Axud1--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-2--Dcr-2\n  bsk--hep\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA\n\nTWO-HYBRID INTERACTIONS:\n  APOA1--PDE1A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  APOA1--APOA1\n\nCO-FRACTIONATION INTERACTIONS:\n  CALM1--PDE1A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CALM--PDE1A\n  PDE1A--calA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APOA1--APOA1\n  APOA1--APOA1\n  APOA1--APP\n  APOA1--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--PDE1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOA1--APOA1\n  APP--APP\n  PDE1A--PDE1C\n  PDE1A--PDE1C\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  GBF1--PDE1A\n  GBF1--Rab18\n  PDE1A--Rab18\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOA1--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 9 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n  CG5973--phyl\n  phyl--phyl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1620--CG5973\n  CG1620--CG8745\n  CG1620--MrgBP\n  CG1620--Rpd3\n  CG1620--dom\n  CG5973--CG8745\n  CG5973--MrgBP\n  CG5973--Rpd3\n  CG5973--YL-1\n  CG5973--dom\n  CG5973--rept\n  CG8745--MrgBP\n  CG8745--Rpd3\n  CG8745--dom\n  CG8745--rept\n  MrgBP--dom\n  YL-1--dom\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Rpd3--dom\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dom--rept\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n- Network density: approximately 0.51\n- Hub proteins (highly connected): PCNA, skpF\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG13138--CG13138\n  CG13138--skpF\n  CG14053--CG33017\n  CG14053--CG9316\n  CG14053--skpF\n  CG33017--skpF\n  CG4221--skpF\n  CG9316--skpF\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--skpF\n  Rca1--skpF\n  ntc--skpF\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG32221--skpF\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CLDN19, PKD2L1, TNNI1, TNNI3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CLDN19, PKD2L1, TNNI1, TNNI3\n\nTWO-HYBRID INTERACTIONS:\n  CLDN19--PKD2L1\n  PKD2L1--TNNI3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PKD2L1--TNNI3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PKD2L1--TNNI1\n  PKD2L1--TNNI3\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, lwr, mex1, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--mex1\n  CG13704--mex1\n  CG14074--CG14074\n  CG14074--lwr\n  CG14074--mex1\n  CG8083--mex1\n  CG8909--mex1\n  Syt12--mex1\n  Syt12--ninaD\n  lwr--lwr\n  lwr--lwr\n  lwr--mex1\n  mex1--ninaD\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: ZnT41F\n\nPredict the interactions for ZnT41F:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ZnT41F--ZnT41F\n  ZnT41F--mex1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n- Network density: approximately 0.56\n- Hub proteins (highly connected): CG9356, zuc\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG14232--CG9356\n  CG14232--CG9356\n  CG18259--CG18259\n  CG18259--CG9356\n  CG9356--Mf\n  CG9356--oc\n  CG9356--srpk79D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14232--CG9356\n  CG9356--Rab2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  srpk79D--srpk79D\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG18259--Tom20\n  CG18259--zuc\n  CG9356--Tom20\n  CG9356--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav\n\nTWO-HYBRID INTERACTIONS:\n  CG15022--CG2258\n  CG15022--Cip4\n  CG15022--Dap160\n  CG15022--Dys\n  CG15022--NimB4\n  CG15022--Ptp52F\n  CG15022--Tsp\n  CG15022--dock\n  CG15022--sav\n  Cip4--Cip4\n  dock--dock\n\nFRET INTERACTIONS:\n  sav--sav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10189, CG7856, CG8078, Nha1, stumps"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG7856, CG8078, Nha1, stumps\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--CG7856\n  CG10189--Nha1\n  CG10189--stumps\n  stumps--stumps\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10189--CG8078\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stumps--stumps\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11409, CG33056, CG5555, Hrb27C, betaTub56D"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG5555, Hrb27C, betaTub56D\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG33056--CG5555\n  CG5555--CG5555\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33056--Hrb27C\n  CG33056--betaTub56D\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA\n\nTWO-HYBRID INTERACTIONS:\n  APOA1--PDE1A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  APOA1--APOA1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APOA1--APP\n  APOA1--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--PDE1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOA1--APOA1\n  APP--APP\n  PDE1A--PDE1C\n  PDE1A--PDE1C\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  GBF1--PDE1A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOA1--APP\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA\n\nTWO-HYBRID INTERACTIONS:\n  APOA1--PDE1A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  APOA1--APOA1\n\nCO-FRACTIONATION INTERACTIONS:\n  CALM1--PDE1A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CALM--PDE1A\n  PDE1A--calA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APOA1--APOA1\n  APOA1--APOA1\n  APOA1--APP\n  APOA1--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--PDE1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOA1--APOA1\n  APP--APP\n  PDE1A--PDE1C\n  PDE1A--PDE1C\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  GBF1--PDE1A\n  GBF1--Rab18\n  PDE1A--Rab18\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOA1--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 9 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG10887, clu\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10887--CG12674\n  CG10887--Dip-B\n  Dip-B--Dip-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--CG1104\n  CG10887--CG31954\n  CG10887--CG9008\n  CG10887--Hsc70-1\n  CG10887--Hsc70-2\n  CG10887--clu\n  CG10887--lbl\n  Hsc70-1--Hsc70-2\n  Hsc70-1--clu\n  Hsc70-2--clu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  clu--clu\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10924, CG30409, Pvf1, Roc2, robl22E, spir"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10924, CG30409, Pvf1, Roc2, robl22E, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG10924--CG30409\n  CG30409--Pvf1\n  CG30409--Roc2\n  CG30409--robl22E\n  CG30409--spir\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11286--fws\n  CG31365--CG31365\n  CG5466--fws\n  HLH3B--fws\n  Leash--fws\n  Mad--Mad\n  Mad--fws\n  fws--gukh\n  fws--rti\n\nCO-FRACTIONATION INTERACTIONS:\n  Mad--Mad\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fws--rti\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11286--fws\n  CG31365--CG31365\n  CG31365--fws\n  CG5466--fws\n  HLH3B--fws\n  Leash--Leash\n  Leash--fws\n  Mad--Mad\n  Mad--fws\n  RtGEF--fws\n  fws--gukh\n  fws--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mad--Mad\n  Mad--Mad\n  fws--rti\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Mad--Mad\n\nCO-FRACTIONATION INTERACTIONS:\n  Mad--Mad\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok\n\nTWO-HYBRID INTERACTIONS:\n  Br140--CG16838\n  CG17244--CG9293\n  CG7997--CG9293\n  CG9293--GM130\n  CG9293--Lapsyn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--CG9293\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--enok\n  CG16838--CG9293\n  CG16838--Eaf6\n  CG16838--enok\n  CG16838--enok\n  CG9293--Eaf6\n  CG9293--enok\n  CG9293--enok\n  Eaf6--enok\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Br140--enok\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok\n\nTWO-HYBRID INTERACTIONS:\n  Br140--CG16838\n  CG17244--CG9293\n  CG32809--CG9293\n  CG7997--CG9293\n  CG9293--GM130\n  CG9293--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG16838--enok\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG9293\n  Br140--CG9293\n  Br140--CG9293\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--enok\n  Br140--enok\n  Br140--enok\n  CG16838--CG9293\n  CG16838--Eaf6\n  CG16838--enok\n  CG16838--enok\n  CG9293--Eaf6\n  CG9293--Eaf6\n  CG9293--enok\n  CG9293--enok\n  Eaf6--enok\n  Eaf6--enok\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  CG16838--enok\n  CG16838--enok\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Br140--enok\n\nNETWORK SUMMARY: 10 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Blos2, CG10466, CG3407, CG5280, bin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG10466, CG3407, CG5280, bin\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG10466\n  CG10466--CG5280\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10466--CG3407\n  CG10466--bin\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup\n\nTWO-HYBRID INTERACTIONS:\n  CG15422--CG15422\n  CG15422--CG17777\n  CG15422--CG7381\n  CG17777--CG34168\n  CG17777--CG7381\n  CG34168--CG7381\n  CG3708--CG7381\n  CG7381--CG8854\n  CG7381--caup\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  caup--caup\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG10721--CG4045\n  CG10721--CG4293\n  CG10721--Pgd\n  CG10721--RpS20\n  CG10721--l(2)efl\n  CG10721--mtDNA-helicase\n  l(2)efl--l(2)efl\n  l(2)efl--l(2)efl\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG10508--CG16721\n  CG10508--CG9213\n  CG10508--CycE\n  CG10508--Pp2B-14D\n  CG10508--RhoGAP92B\n  CG10508--Tektin-A\n  CG10508--Traf-like\n  CG16721--Prm\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG10508--CG14840\n  CG10508--CG16721\n  CG10508--CG9213\n  CG10508--CycE\n  CG10508--Pp2B-14D\n  CG10508--Prm\n  CG10508--RhoGAP92B\n  CG10508--Tektin-A\n  CG10508--Traf-like\n  CG16721--Prm\n  Tektin-A--Traf-like\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13133, CG13667, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n\nTWO-HYBRID INTERACTIONS:\n  CG13133--CG13133\n  CG13133--CG13667\n  CG13133--CG13667\n  CG13133--CG34198\n  CG13133--Droj2\n  CG13133--Mst84Db\n  CG13133--Mst84Dd\n  CG13133--Mst87F\n  CG13133--Rca1\n  CG13133--metl\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG14317\n\nPredict the interactions for CG14317:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13133--CG14317"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG14543\n  CG14153--CG14543\n  CG14543--CG42565\n  CG14543--HLH4C\n  CG14543--N\n  CG14543--RpS26\n  CG14543--Sps2\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14543--Rae1\n  CG14543--Treh\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  Rae1--Treh\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 10 proteins, 130 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11380, CG5147, CG6569, Sin, Tom20\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG5147\n  CG5147--CG6569\n  CG5147--Sin\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5147--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: eco\n\nPredict the interactions for eco:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5147--eco\n\nCO-PURIFICATION INTERACTIONS:\n  eco--eco\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Tom20--eco"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG10949--Fer1HCH\n  CG14315--CG6683\n  CG6683--CG6683\n  CG6683--Fer1HCH\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG6683\n  CG10585--CG8026\n  CG10949--CG6683\n  CG10949--CG8026\n  CG10949--CG8560\n  CG6683--CG8026\n  CG6683--CG8560\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATP13A2, LSM7, NPY\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: NPY1R\n\nPredict the interactions for NPY1R:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ATP13A2--NPY1R\n  LSM7--NPY1R\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  NPY--NPY1R"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8\n\nTWO-HYBRID INTERACTIONS:\n  CG13014--CG8248\n  CG14905--CG8248\n  CG14905--NimC1\n  CG34165--CG8248\n  CG3652--CG8248\n  CG5059--CG5059\n  CG5059--CG8248\n  CG8116--CG8248\n  CG8248--NimC1\n  CG8248--Syx6\n  CG8248--Syx8\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15306, Cdlc2, Vap-33B, ctp\n- Network density: approximately 0.83\n- Hub proteins (highly connected): ctp, CG15306\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15306, Cdlc2, Vap-33B, ctp\n\nTWO-HYBRID INTERACTIONS:\n  CG15306--Cdlc2\n  CG15306--Vap-33B\n  CG15306--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG15578, Chi\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--CG15578\n  CG11275--Chi\n  CG11275--Chi\n  CG12995--CG15578\n  CG13168--CG15578\n  CG15578--CG9083\n  CG15578--Chi\n  CG15578--HLH4C\n  CG15578--Trn-SR\n  CG15578--cp309\n  CG15578--mbo\n  cp309--cp309\n  cp309--cp309\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10732, CG11454, CG12470, CG13083, CG15771, CG17599, CG4622, Dyb, Ibf2, Su(var)3-7\n\nTWO-HYBRID INTERACTIONS:\n  CG10732--CG11454\n  CG11454--CG12470\n  CG11454--CG13083\n  CG11454--CG15771\n  CG11454--CG17599\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Dyb\n  CG11454--Ibf2\n  CG11454--Su(var)3-7\n  CG13083--CG17599\n  CG17599--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-7\n  CG6304--eIF4E-7\n  CG9775--eIF4E-7\n  Thor--eIF4E-7\n  Thor--eIF4E-7\n  cup--eIF4E-7\n  eIF4E-7--eIF4G\n  eIF4E-7--mxt\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-7\n  CG6304--eIF4E-7\n  CG9775--eIF4E-7\n  Gld2--eIF4E-7\n  Thor--eIF4E-7\n  Thor--eIF4E-7\n  cup--eIF4E-7\n  eIF4E-7--eIF4G\n  eIF4E-7--eIF4G2\n  eIF4E-7--mxt\n  eIF4E-7--mxt\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  eIF4E-7--eIF4G\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n- Network density: approximately 0.64\n- Hub proteins (highly connected): orb2, TSG101\n- Total interactions: approximately 29"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--sky\n  Rab7--Vps39\n  TSG101--TSG101\n  TSG101--TSG101\n  TSG101--TSG101\n  shrb--shrb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab5--Rab7\n  orb2--orb2\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  TSG101--TSG101\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--sky\n\nPCA INTERACTIONS:\n  TSG101--TSG101\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Rab5--sky\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hrs--sky\n  Rab7--sky\n  TSG101--sky\n  Vps25--sky\n  Vps39--sky\n  shrb--sky\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO1, CG10559, CG6707, cold, stops\n- Network density: approximately 0.50\n- Hub proteins (highly connected): cold, AGO1\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10559, CG6707, cold, stops\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--cold\n  CG6707--cold\n  cold--stops\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--cold\n  AGO1--cold\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: SIDL, SKIP, Shal, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  SIDL--Shal\n  SKIP--Shal\n  Shal--Tango2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Shal\n  SIDL--Shal\n  SKIP--Shal\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: CG5890\n\nPredict the interactions for CG5890:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5890--Shal"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG8349--CG8349\n\nCO-FRACTIONATION INTERACTIONS:\n  spas--spas\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spas--spas\n\nNETWORK SUMMARY: 9 proteins, 4 interactions\n\nNew protein to integrate: CG14853\n\nPredict the interactions for CG14853:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14853--CG15365\n  CG14853--CG6287\n  CG14853--CG7386\n  CG14853--CG8349\n  CG14853--Cpr50Ca\n  CG14853--Gclm\n  CG14853--RpL7\n  CG14853--morgue\n  CG14853--spas"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ATPCL, CG10137, CG11486, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n  ATPCL--CG11486\n  ATPCL--CG14253\n  ATPCL--CG30263\n  ATPCL--l(1)G0020\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  ATPCL--sea\n  ATPCL--sea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPCL--sba\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATPCL--Tom20\n  Tom20--Tom20\n  Tom20--sea\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG13454\n\nPredict the interactions for CG13454:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ATPCL--CG13454"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO1, CG10918, CG11982, CG7220, CG7546, UbcD2, ben, eff\n\nTWO-HYBRID INTERACTIONS:\n  CG10918--CG11982\n  CG11982--CG7220\n  CG11982--UbcD2\n  CG11982--ben\n  CG11982--eff\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO1--CG11982\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO1--CG11982\n  CG11982--CG7546\n\nNETWORK SUMMARY: 8 proteins, 8 interactions\n\nNew protein to integrate: CG3473\n\nPredict the interactions for CG3473:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11982--CG3473"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--dl\n  CG10470--sky\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG1444\n  CG1444--CG14482\n  CG14482--CG33303\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--CG42369\n  CG10470--dl\n  CG10470--sky\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG1444\n  CG10470--CG14482\n  CG10470--CG33303\n  CG1444--CG14482\n  CG1444--CG33303\n  CG14482--CG33303\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Dcp1, Mst84Dc, cdc2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: CG9821\n\nPredict the interactions for CG9821:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9821--Dcp1\n  CG9821--Mst84Dc\n  CG9821--cdc2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu\n\nTWO-HYBRID INTERACTIONS:\n  Flo1--NimC1\n  Flo1--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10103--CG6259\n  CG10103--Flo1\n  CG10103--Flo2\n  CG10103--Vps2\n  CG10103--chico\n  CG10732--CG6259\n  CG10732--Flo1\n  CG10732--Flo2\n  CG6259--Flo2\n  CG6259--Vps2\n  CG6259--chico\n  Flo1--Flo2\n  Flo2--chico\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10103--CG6259\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu\n\nTWO-HYBRID INTERACTIONS:\n  Flo1--NimC1\n  Flo1--Sesn\n  Flo1--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10103--CG10732\n  CG10103--CG6259\n  CG10103--Flo1\n  CG10103--Flo2\n  CG10103--Vps2\n  CG10103--chico\n  CG10732--CG6259\n  CG10732--Flo1\n  CG10732--Flo2\n  CG10732--chico\n  CG6259--Flo1\n  CG6259--Flo2\n  CG6259--Vps2\n  CG6259--chico\n  Flo1--Flo2\n  Flo1--Vps2\n  Flo1--chico\n  Flo2--chico\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10103--CG6259\n  Flo1--Flo2\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11790, CG12521, CG17652, CG31731, CG6733\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG6733\n  CG12521--CG6733\n  CG17652--CG6733\n  CG31731--CG6733\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: Hip1\n\nPredict the interactions for Hip1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6733--Hip1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls\n\nTWO-HYBRID INTERACTIONS:\n  CG9850--E5\n  CG9850--Grip91\n  CG9850--dlg1\n  dlg1--dlg1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG9850--wls\n  wg--wls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  wg--wls\n  wg--wls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  dlg1--dlg1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG9850--wg\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls\n\nTWO-HYBRID INTERACTIONS:\n  CG33017--CG9850\n  CG9850--Crk\n  CG9850--E5\n  CG9850--Grip91\n  CG9850--dlg1\n  dlg1--dlg1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  CG9850--wls\n  wg--wls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  wg--wls\n  wg--wls\n\nCO-FRACTIONATION INTERACTIONS:\n  dlg1--dlg1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  dlg1--dlg1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG9850--wg\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n- Network density: approximately 0.38\n- Hub proteins (highly connected): CG11883, gammaSnap1\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n\nTWO-HYBRID INTERACTIONS:\n  CG11883--CG12470\n  CG11883--CG12470\n  CG11883--CG15735\n  CG11883--CG4328\n  CG11883--crn\n  CG11883--gammaSnap1\n  CG11883--tup\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--Spred\n  CG10209--Vsx2\n  CG9331--Spred\n  Pms2--Spred\n  Spred--Vsx2\n  Spred--angel\n  Spred--hale\n  Spred--ms(3)K81\n  Spred--ttm50\n  Vsx2--hale\n  hale--hale\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Spred--stau\n  stau--stau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stau--stau\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17652, CG4617, CG6733, dyn-p25\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG17652, CG4617\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17652, CG4617, CG6733, dyn-p25\n\nTWO-HYBRID INTERACTIONS:\n  CG17652--CG4617\n  CG17652--CG6733\n  CG17652--dyn-p25\n  CG4617--CG4617\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG11266, CG12877, CG31211, CG5808, CG6340, CG6843, KLHL18, SRm160, l(2)37Cb\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG11266\n  CG10324--CG12877\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6340\n  CG10324--CG6843\n  CG10324--SRm160\n  CG10324--l(2)37Cb\n  CG11266--CG11266\n  CG11266--CG31211\n  CG11266--CG6340\n  CG11266--CG6843\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG5808\n  CG31211--CG6843\n  CG31211--SRm160\n  CG5808--CG6843\n  CG6340--CG6843\n  CG6843--CG6843\n  CG6843--SRm160\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--l(2)37Cb\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cyp6a22, Osi6, l(1)G0193, p53\n\nTWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp6a22, Osi6, l(1)G0193, p53\n\nTWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cyp6a22--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a22--l(1)G0193\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B\n\nTWO-HYBRID INTERACTIONS:\n  CG10418--LSm1\n  LSm1--Prosbeta5\n  LSm1--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10418--CG6610\n  CG6610--LSm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm-4--LSm1\n  LSm-4--LSm1\n  LSm1--me31B\n  LSm7--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B\n\nTWO-HYBRID INTERACTIONS:\n  CG10418--LSm1\n  CG6610--LSm7\n  Hil--LSm1\n  LSm1--Prosbeta5\n  LSm1--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10418--CG6610\n  CG6610--LSm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm-4--LSm1\n  LSm-4--LSm1\n  LSm1--LSm7\n  LSm1--LSm7\n  LSm1--Patr-1\n  LSm1--Patr-1\n  LSm1--me31B\n  LSm7--Patr-1\n  LSm7--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Patr-1--me31B\n  me31B--me31B\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Aldh-III, CG11699, CG1746, for\n\nTWO-HYBRID INTERACTIONS:\n  Aldh-III--Aldh-III\n  CG11699--CG1746\n  CG11699--for\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aldh-III, CG11699, CG1746, for\n\nTWO-HYBRID INTERACTIONS:\n  Aldh-III--Aldh-III\n  Aldh-III--CG11699\n  CG11699--CG1746\n  CG11699--for\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG12470\n  CG10959--CG13151\n  CG10959--Eb1\n  CG10959--Ets65A\n  CG10959--GATAe\n  CG10959--Gprk1\n  CG10959--RpS30\n  CG10959--Spt6\n  Eb1--Eb1\n  Eb1--Eb1\n\nPCA INTERACTIONS:\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10959--CG16865\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12576, CG42359, Tsp42Ek, zf30C\n\nTWO-HYBRID INTERACTIONS:\n  CG12576--Tsp42Ek\n  CG42359--Tsp42Ek\n  Tsp42Ek--zf30C\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG10321\n\nPredict the interactions for CG10321:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10321--Tsp42Ek"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n- Network density: approximately 1.11\n- Hub proteins (highly connected): LMNA, GIT1\n- Total interactions: approximately 40"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGTPBP1, DNAJC5, ERC2, GIT1, LMNA, NCOA2, PLEKHA4, PPFIA4, PRC1\n\nTWO-HYBRID INTERACTIONS:\n  AGTPBP1--PPFIA4\n  ERC2--PPFIA4\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  GIT1--PPFIA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  NCOA2--PPFIA4\n  PLEKHA4--PLEKHA4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA4\n  GIT1--GIT1\n  GIT1--PPFIA4\n  NCOA2--PPFIA4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  LMNA--LMNA\n  PRC1--PRC1\n  PRC1--PRC1\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GIT1--PLEKHA4\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PLEKHA4\n  LMNA--PRC1\n  PLEKHA4--PPFIA4\n  PPFIA4--PRC1\n  PRC1--PRC1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  LMNA--LMNA\n\nFRET INTERACTIONS:\n  DNAJC5--PPFIA4\n\nCO-PURIFICATION INTERACTIONS:\n  PRC1--PRC1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--LMNA\n  LMNA--PPFIA4\n\nNETWORK SUMMARY: 9 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10749, CG14210, Lin29, Patronin, RpLP1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG14210, Lin29, Patronin, RpLP1\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG14210\n  CG14210--Lin29\n  CG14210--Patronin\n  CG14210--RpLP1\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG2061\n  CG2061--CG32694\n  CG2061--Dpy-30L2\n  CG2061--RpL7\n  CG2061--eIF-3p66\n\nNETWORK SUMMARY: 8 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG2061\n  CG2061--CG32694\n  CG2061--CG6287\n  CG2061--CG9986\n  CG2061--Dpy-30L2\n  CG2061--RpL7\n  CG2061--eIF-3p66\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG17265--CG17265\n  CG17265--CG45105\n  CG43143--CG45105\n  CG45105--Kap-alpha3\n  CG45105--Pp1-87B\n  CG45105--coro\n  CG45105--homer\n  CG45105--mbo\n\nNAN INTERACTIONS:\n  CG45105--lva\n  Fas2--lva\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG43143--Fas2\n  CG43143--Fas2\n  CG45105--Fas2\n  CG45105--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1\n\nTWO-HYBRID INTERACTIONS:\n  CG5033--CG5642\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--CG6712\n  CG5033--CG6724\n  CG5033--CG8939\n  CG5033--FK506-bp1\n  CG5033--Non1\n  CG5033--Rbm13\n  CG5033--RpL7-like\n  CG5033--Tsc1\n  CG6712--CG8939\n  CG6712--Non1\n  CG6712--Rbm13\n  CG6712--RpL7-like\n  CG6724--FK506-bp1\n  CG6724--Rbm13\n  CG8939--FK506-bp1\n  CG8939--Non1\n  CG8939--Rbm13\n  CG8939--RpL7-like\n  CG8939--Tsc1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--Non1\n  Non1--Rbm13\n  Non1--RpL7-like\n  Rbm13--RpL7-like\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arr1, CG11449, CG31365, Grip71, Hsp68, Ndc1, krz, nuf, poe\n\nTWO-HYBRID INTERACTIONS:\n  Arr1--CG11449\n  CG11449--CG31365\n  CG11449--Grip71\n  CG11449--Hsp68\n  CG11449--Ndc1\n  CG11449--krz\n  CG11449--nuf\n  CG11449--poe\n  CG31365--CG31365\n  nuf--nuf\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: M1BP\n\nPredict the interactions for M1BP:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Arr1--M1BP\n  CG11449--M1BP\n  M1BP--M1BP"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Blm, CG10721, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  Blm--mtDNA-helicase\n  CG10721--mtDNA-helicase\n  Mlh1--mtDNA-helicase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Coprox--Iap2\n  Coprox--mtDNA-helicase\n  EndoG--Iap2\n  EndoG--Su(P)\n  EndoG--mtDNA-helicase\n  Iap2--Iap2\n  Iap2--Mpcp\n  Iap2--Su(P)\n  Iap2--mtDNA-helicase\n  Mpcp--mtDNA-helicase\n  Su(P)--mtDNA-helicase\n\nCO-FRACTIONATION INTERACTIONS:\n  EndoG--EndoG\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: CG3262\n\nPredict the interactions for CG3262:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG3262--Iap2\n  CG3262--mtDNA-helicase"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs31\n  CG9577--CG9577\n  Met75Ca--Trs31\n  Met75Cb--Trs31\n  Trs20--Trs31\n  Trs20--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Trs20--gry\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  SIDL--Trs20\n  Trs31--gry\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  CG9577--CG9577\n  CG9577--Trs31\n  Met75Ca--Trs31\n  Met75Cb--Trs31\n  Trs20--Trs31\n  Trs20--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG6425, Scp2\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3713, CG3880, CG6425, CHIP, Cpr47Ea, CycK, Scp2, Taz, nonA-l, sip1\n\nTWO-HYBRID INTERACTIONS:\n  CG3713--CG6425\n  CG3880--CG6425\n  CG6425--CHIP\n  CG6425--Cpr47Ea\n  CG6425--CycK\n  CG6425--Scp2\n  CG6425--Taz\n  CG6425--nonA-l\n  CG6425--sip1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  Scp2--Scp2\n  Scp2--Scp2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Elp1\n  CG30393--Elp1\n  CG8368--Elp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Dcr-1\n  AGO2--Dcr-1\n  AGO2--Dcr-2\n  AGO2--Dcr-2\n  AGO2--Elp1\n  AGO2--Elp1\n  Dcr-1--Elp1\n  Dcr-1--Elp1\n  Dcr-2--Dcr-2\n  Dcr-2--Elp1\n  Dcr-2--Elp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--rti\n  Elp1--Elp3\n  Elp1--rti\n  Elp3--rti\n  rti--rti\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  AGO2--roX1\n  Dcr-2--roX1\n  Elp1--roX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  AGO2--Dcr-2\n  Elp3--Elp3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Jupiter, Mink, Tsc1, foxo, mad2, skpB\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Mink, Tsc1\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jupiter, Mink, Tsc1, foxo, mad2, skpB\n\nTWO-HYBRID INTERACTIONS:\n  Jupiter--Mink\n  Mink--mad2\n  Mink--skpB\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--Tsc1\n  Mink--foxo\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12012, CG18336, CG4822, caps\n\nTWO-HYBRID INTERACTIONS:\n  CG18336--CG4822\n  CG4822--caps\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12012--CG4822\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: mle\n\nPredict the interactions for mle:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG4822--mle\n  mle--mle\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mle--mle"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG11322, Moe\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG11164--CG11322\n  CG11322--CG12470\n  CG11322--CG3704\n  CG11322--CG3919\n  CG11322--Cpr50Ca\n  CG11322--Moe\n  CG11322--Plzf\n  CG11322--RpS7\n  CG3919--CG3919\n  Moe--Moe\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: FucTA, Pabp2, cnk, hh, rux, smo, swm\n\nTWO-HYBRID INTERACTIONS:\n  Pabp2--Pabp2\n  Pabp2--swm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rux--swm\n  rux--swm\n  smo--swm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  cnk--swm\n  hh--smo\n  hh--smo\n  hh--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  FucTA--swm\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n\nNETWORK SUMMARY: 7 proteins, 20 interactions\n\nNew protein to integrate: ZC3H3\n\nPredict the interactions for ZC3H3:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10222, CG3704, pbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG3704\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10222--pbl\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG32683\n\nPredict the interactions for CG32683:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10222--CG32683"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5151, CG8191, CycG, mei-S332\n- Network density: approximately 0.83\n- Hub proteins (highly connected): mei-S332, CG5151\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5151, CG8191, CycG, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  CG5151--CG8191\n  CG5151--CycG\n  CG5151--mei-S332\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG13962--CG14354\n  CG14354--CG15638\n  CG14354--CG4229\n  CG14354--CG6520\n  CG14354--CG9986\n  CG14354--Sgt\n  CG9986--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 8 proteins, 9 interactions\n\nNew protein to integrate: Lcp2\n\nPredict the interactions for Lcp2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14354--Lcp2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe\n\nTWO-HYBRID INTERACTIONS:\n  Arr1--CG11449\n  Arr1--M1BP\n  CG11449--CG31365\n  CG11449--Grip71\n  CG11449--Hsp68\n  CG11449--M1BP\n  CG11449--Ndc1\n  CG11449--krz\n  CG11449--nuf\n  CG11449--poe\n  CG31365--CG31365\n  M1BP--M1BP\n  nuf--nuf\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10365, CG12589, CG13084, CG32264, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG10365--CG12589\n  CG10365--CG13084\n  CG10365--CG32264\n  CG10365--CG3731\n  CG10365--Fem-1\n  CG10365--Prm\n  CG10365--Xrp1\n  CG10365--eIF-5A\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6707, Cas, Cpn, Pen, Vsx2, dsx, fra, nocte, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG6707--Cas\n  Cas--Cpn\n  Cas--Pen\n  Cas--Vsx2\n  Cas--dsx\n  Cas--nocte\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cas--scra\n  Pen--scra\n  fra--fra\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cas--fra\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: Hakai\n\nPredict the interactions for Hakai:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cas--Hakai"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG11726--CG12470\n  CG11726--CG1738\n  CG11726--CG2120\n  CG11726--CG2709\n  CG11726--CG8038\n  CG11726--CG8349\n  CG2709--CG2709\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG11447--CG11726\n  CG11726--CG12470\n  CG11726--CG1738\n  CG11726--CG2120\n  CG11726--CG2709\n  CG11726--CG5674\n  CG11726--CG8038\n  CG11726--CG8349\n  CG2709--CG2709\n  CG8349--CG8349\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG3630, Ntf-2\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol\n\nTWO-HYBRID INTERACTIONS:\n  Bx42--CG3630\n  CG10752--CG3630\n  CG14422--CG3630\n  CG3630--Ef1gamma\n  CG3630--sol\n  Ntf-2--Ntf-2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--Cam\n  CG3630--Ntf-2\n  CG3630--Sod\n  CG3630--smt3\n  Ntf-2--Sod\n  Ntf-2--smt3\n  Sod--smt3\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG17744, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--CG6470\n  CG17744--CG6470\n  CG6272--CG6470\n  CG6272--drm\n  CG6470--Jafrac1\n  CG6470--Nnf1a\n  CG6470--Pat1\n  CG6470--Traf-like\n  CG6470--drm\n  CG6470--org-1\n  Pat1--Traf-like\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff\n\nTWO-HYBRID INTERACTIONS:\n  CG10918--CG11982\n  CG11982--CG3473\n  CG11982--CG7220\n  CG11982--UbcD2\n  CG11982--ben\n  CG11982--eff\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO1--CG11982\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO1--CG11982\n  CG11982--CG7546\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10139, Hug, PK2-R1, PK2-R2, TrpA1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Hug, PK2-R1, PK2-R2, TrpA1\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--Hug\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Hug--PK2-R1\n  Hug--PK2-R2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hug--TrpA1\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3756, RpIII128, l(2)37Cg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3756, RpIII128, l(2)37Cg\n\nTWO-HYBRID INTERACTIONS:\n  CG3756--l(2)37Cg\n  CG3756--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3756--RpIII128\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10559, CG13427, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG13427\n  CG10559--CG18624\n  CG10559--Ef1alpha48D\n  CG10559--Indy\n  CG10559--LpR1\n  CG10559--NimC1\n  CG10559--cold\n  CG10559--gb\n\nNETWORK SUMMARY: 9 proteins, 8 interactions\n\nNew protein to integrate: CG1690\n\nPredict the interactions for CG1690:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10559--CG1690"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG6340, CTPsyn\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG10324, CG10585, CG11266, CG13310, CG6340, CG6843, CTPsyn, ewg, ssp\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10324--CG11266\n  CG10324--CG6340\n  CG10324--CG6843\n  CG11266--CG11266\n  CG11266--CG6340\n  CG11266--CG6843\n  CG13310--CG6340\n  CG6340--CG6843\n  CG6340--ewg\n  CG6340--ssp\n  CG6843--CG6843\n  CTPsyn--CTPsyn\n  ssp--ssp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10209--CG10585\n  CG10209--CG6340\n  CG10585--CG6340\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6340--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG14053--CG33144\n  CG14053--skpF\n  CG14232--CG33144\n  CG18259--CG18259\n  CG18259--CG33144\n  CG18259--Prm\n  CG33144--CG34113\n  CG33144--Prm\n  CG33144--bocksbeutel\n  CG33144--skpF\n  CG33144--spartin\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10321, CG15116, Oxp, rhi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG15116\n  CG15116--Oxp\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15116--rti\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG15116, Oxp, rhi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG15116\n  CG15116--Oxp\n  CG15116--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15116--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG11726, CG8349\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG11447--CG11726\n  CG11726--CG12470\n  CG11726--CG1738\n  CG11726--CG2120\n  CG11726--CG2709\n  CG11726--CG5674\n  CG11726--CG8038\n  CG11726--CG8349\n  CG2709--CG2709\n  CG8349--CG8349\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--CG10694\n  CG10462--CG2116\n  CG10462--CG3847\n  CG10462--CG7911\n  CG10462--Mdr49\n  CG10462--Usf\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n\nTWO-HYBRID INTERACTIONS:\n  CG11883--CG15735\n  CG11883--crn\n  CG11883--gammaSnap1\n  CG11883--tup\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n\nTWO-HYBRID INTERACTIONS:\n  CG11883--CG12470\n  CG11883--CG12470\n  CG11883--CG15735\n  CG11883--CG4328\n  CG11883--crn\n  CG11883--gammaSnap1\n  CG11883--tup\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Blos2, CG3407, CG5280, bin\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n\nNETWORK SUMMARY: 4 proteins, 2 interactions\n\nNew protein to integrate: CG10466\n\nPredict the interactions for CG10466:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Blos2--CG10466\n  CG10466--CG5280\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10466--CG3407\n  CG10466--bin"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dor\n\nTWO-HYBRID INTERACTIONS:\n  Atg4a--Atg8b\n  Atg8b--CG11723\n  Atg8b--CG12576\n  Atg8b--CG13204\n  Atg8b--DOR\n  Atg8b--DOR\n  Atg8b--Tbc1d15-17\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg8b--DOR\n  Atg8b--dor\n  Atg8b--dor\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: dom\n\nPredict the interactions for dom:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Atg8b--dom\n  CG11723--dom"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10550, CG13996, CG1746, CG9986"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10550, CG13996, CG1746, CG9986\n\nTWO-HYBRID INTERACTIONS:\n  CG10550--CG13996\n  CG10550--CG1746\n  CG10550--CG9986\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1092, CG11267, CG18815, CG8187, RpL37a, mei-W68\n\nTWO-HYBRID INTERACTIONS:\n  CG1092--CG8187\n  CG11267--CG8187\n  CG18815--CG8187\n  CG8187--RpL37a\n  CG8187--mei-W68\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: RpL10\n\nPredict the interactions for RpL10:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8187--RpL10\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL10--RpL37a"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG1041, rpr\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--CG4168\n  CG1041--CG7200\n  CG1041--Hakai\n  CG1041--Tango10\n  CG1041--TwdlE\n  CG1041--ebd1\n  CG1041--kin17\n  CG1041--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  rpr--rpr\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1041--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10209, CG15458, CG31958, Pex19\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG10209, CG15458\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG15458, CG31958, Pex19\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG15458\n  CG10209--CG15458\n  CG15458--CG31958\n  CG15458--Pex19\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Aldh-III, CG11699, CG1746\n\nTWO-HYBRID INTERACTIONS:\n  Aldh-III--Aldh-III\n  Aldh-III--CG11699\n  CG11699--CG1746\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: for\n\nPredict the interactions for for:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11699--for"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1116, CG18417, CG7985\n\nTWO-HYBRID INTERACTIONS:\n  CG1116--CG18417\n  CG18417--CG7985\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: ph-p\n\nPredict the interactions for ph-p:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG18417--ph-p\n  ph-p--ph-p\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ph-p--ph-p\n\nCO-FRACTIONATION INTERACTIONS:\n  ph-p--ph-p"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Snca, Usp7, Ywhaz\n\nTWO-HYBRID INTERACTIONS:\n  CG17344--Dmtn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Actb--Kctd13\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Dmtn--Kctd13\n  Dmtn--Ppp1r9b\n  Dmtn--Usp7\n  Dmtn--Ywhaz\n  Kctd13--Kctd13\n  Kctd13--Ppp1r9b\n  Kctd13--Usp7\n  Kctd13--Ywhaz\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Snca\n  Ppp1r9b--Ywhaz\n  Ppp1r9b--Ywhaz\n  Usp7--Usp7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ppp1r9b--Ppp1r9b\n\nCO-FRACTIONATION INTERACTIONS:\n  Actb--Dmtn\n  Dmtn--Golga2\n  Dmtn--Snca\n  Snca--Snca\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Kctd13--Kctd13\n  Ppp1r9b--Ppp1r9b\n  Usp7--Usp7\n\nNETWORK SUMMARY: 9 proteins, 27 interactions\n\nNew protein to integrate: Prkaca\n\nPredict the interactions for Prkaca:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-FRACTIONATION INTERACTIONS:\n  Dmtn--Prkaca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kctd13--Prkaca"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG16853, ZnT41F, mew\n\nTWO-HYBRID INTERACTIONS:\n  ZnT41F--ZnT41F\n\nNETWORK SUMMARY: 3 proteins, 1 interactions\n\nNew protein to integrate: CG12994\n\nPredict the interactions for CG12994:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG12994--ZnT41F\n  CG12994--mew"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGEF11--PLXNB3\n  ARHGEF11--PLXNB3\n  BTBD3--BTBD3\n  BTBD3--PLXNB3\n  CUL7--PLXNB3\n  DSCR9--PLXNB3\n  DSCR9--SPOCK2\n  HSPA13--PLXNB3\n  MAGI2--PLXNB3\n  MAGI3--PLXNB3\n  PLXNB3--SPOCK2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARHGEF11--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL7--CUL7\n  CUL7--CUL7\n  CUL7--CUL7\n  MAGI3--RNF123\n  PLXNB3--RNF123\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n\nTWO-HYBRID INTERACTIONS:\n  Hrs--Tbc1d15-17\n  Tbc1d15-17--spartin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dmn--Tbc1d15-17\n  Rab11--Tbc1d15-17\n  Rab5--Tbc1d15-17\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dmn--Rab5\n  Rab11--Rab5\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rab11--Tom20\n  Tbc1d15-17--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n\nTWO-HYBRID INTERACTIONS:\n  Atg8b--Tbc1d15-17\n  Hrs--Tbc1d15-17\n  Tbc1d15-17--spartin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7407--Dmn\n  CG7407--Tbc1d15-17\n  Dmn--Tbc1d15-17\n  Rab11--Tbc1d15-17\n  Rab14--Tbc1d15-17\n  Rab5--Tbc1d15-17\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dmn--Rab5\n  Rab11--Rab5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rab5--Tbc1d15-17\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rab11--Tom20\n  Tbc1d15-17--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10189, CG7856, CG8078, Nha1, stumps\n- Network density: approximately 0.60\n- Hub proteins (highly connected): stumps, CG10189\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG7856, CG8078, Nha1, stumps\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--CG7856\n  CG10189--Nha1\n  CG10189--stumps\n  stumps--stumps\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10189--CG8078\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stumps--stumps\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  CG5611--CG5844\n  CG5844--spz3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--CG5844\n  AnxB10--CG5844\n  AnxB10--Prx2540-2\n  CG5844--ade5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3\n\nTWO-HYBRID INTERACTIONS:\n  Acer--CG5844\n  Akt1--Akt1\n  CG5611--CG5844\n  CG5844--spz3\n  ade5--ade5\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--CG5844\n  AnxB10--CG5844\n  AnxB10--Prx2540-2\n  CG5844--Prx2540-2\n  CG5844--ade5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5844--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ABI3BP, CBX1, FZD5, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  CBX1--CBX1\n  GRB2--GRB2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CBX1--CBX1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CBX1--CBX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  GRK5--GRK5\n\nTWO-HYBRID INTERACTIONS:\n  ABI3BP--CBX1\n  ABI3BP--FZD5\n  ABI3BP--GRB2\n  ABI3BP--MBNL1\n  GRB2--SPTBN1\n  SPDL1--SPDL1\n  SPTBN1--SPTBN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ABI3BP--GRK5\n  ABI3BP--SPDL1\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRK5--SPTBN1\n  SPDL1--SPTBN1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ABI3BP--SPTBN1\n  SPTBN1--SPTBN1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ABI3BP--TIMP2\n  TIMP2--TIMP2\n\nNETWORK SUMMARY: 9 proteins, 24 interactions\n\nNew protein to integrate: GOT1\n\nPredict the interactions for GOT1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ABI3BP--GOT1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GOT1--GRB2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10426, CG3309, CG7156, Nha1, slgA, vret\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG3309--CG7156\n  CG3309--Nha1\n  CG3309--vret\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG3309, CG7156, Nha1, slgA, vret\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG3309--CG7156\n  CG3309--Nha1\n  CG3309--slgA\n  CG3309--vret\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp8, alphaCOP, betaCOP\n\nTWO-HYBRID INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIbeta--CkIIbeta\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Mfap1\n  CkIIalpha--CkIIbeta\n  CkIIalpha--Mfap1\n  CkIIbeta--Mfap1\n  Mfap1--Prp8\n  Mfap1--alphaCOP\n  Mfap1--betaCOP\n  alphaCOP--betaCOP\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CkIIalpha--CkIIbeta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CkIIalpha--CkIIalpha\n\nNETWORK SUMMARY: 7 proteins, 24 interactions\n\nNew protein to integrate: Prp38\n\nPredict the interactions for Prp38:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Mfap1--Prp38\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Prp38\n  CkIIalpha--Prp38\n  CkIIbeta--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Prp38--Prp8\n  Prp38--alphaCOP\n  Prp38--betaCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mfap1--Prp38\n  Mfap1--Prp38"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10257, alpha-catenin-related, bur\n\nTWO-HYBRID INTERACTIONS:\n  CG10257--alpha-catenin-related\n  CG10257--alpha-catenin-related\n\nNETWORK SUMMARY: 3 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10257, alpha-catenin-related, bur\n\nTWO-HYBRID INTERACTIONS:\n  CG10257--alpha-catenin-related\n  CG10257--alpha-catenin-related\n  CG10257--bur\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM\n\nTWO-HYBRID INTERACTIONS:\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  GOPC--GOPC\n  STOM--STOM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--ASIC3\n  ASIC3--GOPC\n  ASIC3--MAGI1\n  DLG4--DLG4\n  DLG4--LIN7B\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ASIC3--PRKACA\n  PRKACA--PRKACA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  STOM--STOM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRKACA--PRKACA\n  STOM--STOM\n\nNETWORK SUMMARY: 8 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM\n\nTWO-HYBRID INTERACTIONS:\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  DLG4--DLG4\n  GOPC--GOPC\n  STOM--STOM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--ASIC3\n  ASIC2--STOM\n  ASIC3--DLG4\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  ASIC3--STOM\n  DLG4--DLG4\n  DLG4--LIN7B\n  GOPC--GOPC\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ASIC3--PRKACA\n  PRKACA--PRKACA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  STOM--STOM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRKACA--PRKACA\n  STOM--STOM\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  MAGI1--MAGI1\n\nNETWORK SUMMARY: 8 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13001, CG30089, Top2, mus101"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13001, CG30089, Top2, mus101\n\nTWO-HYBRID INTERACTIONS:\n  CG13001--mus101\n  CG30089--mus101\n\nCO-FRACTIONATION INTERACTIONS:\n  Top2--Top2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Top2--Top2\n  Top2--mus101\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Top2--mus101\n  Top2--mus101\n\nNETWORK SUMMARY: 4 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Blos1, CG31036, CG4554, Slip1, Taf6, Treh, Usf, cm, w\n\nTWO-HYBRID INTERACTIONS:\n  CG31036--cm\n  CG4554--cm\n  Slip1--cm\n  Taf6--cm\n  Treh--cm\n  Usf--cm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Blos1--cm\n  Blos1--cm\n  cm--w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Blos1--w\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: Or98b\n\nPredict the interactions for Or98b:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Or98b--cm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--CG10694\n  CG10462--CG3847\n  CG10462--Mdr49\n  CG10462--Usf\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--CG10694\n  CG10462--CG2116\n  CG10462--CG3847\n  CG10462--CG7911\n  CG10462--Mdr49\n  CG10462--Usf\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54\n\nTWO-HYBRID INTERACTIONS:\n  CDH1--CDH1\n  EED--ITGAE\n  ITGAE--TRIM54\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--CDH1\n  CDH1--ITGAE\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDH1--CDH1\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  EED--EED\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CDH1--CDH1\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--ITGAE\n  CUL3--RNF123\n  CUL3--TRIM25\n  EED--EED\n  ITGAE--METTL14\n  ITGAE--RNF123\n  METTL14--METTL14\n  METTL14--METTL14\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TRIM25--TRIM25\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CDH1--CDH1\n  CDH1--TRIM25\n  CDH1--TRIM25\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ITGAE--TRIM25\n  TRIM25--TRIM25\n\nCO-FRACTIONATION INTERACTIONS:\n  CUL3--TRIM25\n\nNETWORK SUMMARY: 8 proteins, 55 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11412, CG5009, rols\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG4065\n\nPredict the interactions for CG4065:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG4065--CG5009\n  CG4065--rols"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG31624, CG31988, CG8136, inaD, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG31624--CG8136\n  CG31988--CG8136\n  CG8136--inaD\n  CG8136--kermit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  inaD--inaD\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: rti\n\nPredict the interactions for rti:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG31624--rti\n  CG8136--rti\n  rti--rti"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz\n- Network density: approximately 0.25\n- Hub proteins (highly connected): CG14931, Tsp\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--CG14931\n  CG13005--CG14931\n  CG14931--CG15631\n  CG14931--Cpr50Ca\n  CG14931--Tsp\n  CG14931--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14931--CG9062\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA\n- Network density: approximately 0.64\n- Hub proteins (highly connected): APP, APOA1\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOA1, APP, CALM, CALM1, GBF1, PDE1A, PDE1C, Rab18, calA\n\nTWO-HYBRID INTERACTIONS:\n  APOA1--PDE1A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  APOA1--APOA1\n\nCO-FRACTIONATION INTERACTIONS:\n  CALM1--PDE1A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CALM--PDE1A\n  PDE1A--calA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APOA1--APOA1\n  APOA1--APOA1\n  APOA1--APP\n  APOA1--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--PDE1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOA1--APOA1\n  APP--APP\n  PDE1A--PDE1C\n  PDE1A--PDE1C\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  GBF1--PDE1A\n  GBF1--Rab18\n  PDE1A--Rab18\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOA1--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 9 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Aats-gln, Drep-1, Rtnl1, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-gln--SpdS\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Drep-1--SpdS\n  Rtnl1--Rtnl1\n  Rtnl1--SpdS\n  Rtnl1--SpdS\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 4 proteins, 8 interactions\n\nNew protein to integrate: CG14207\n\nPredict the interactions for CG14207:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14207--Drep-1\n  CG14207--SpdS"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Ady43A, CG1116, CG18417, Cpr92A, tx\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG1116, CG18417\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ady43A, CG1116, CG18417, Cpr92A, tx\n\nTWO-HYBRID INTERACTIONS:\n  Ady43A--CG1116\n  CG1116--CG18417\n  CG1116--Cpr92A\n  CG1116--tx\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10924, CG30409, Pvf1, Roc2, robl22E, spir\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG30409, robl22E\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10924, CG30409, Pvf1, Roc2, robl22E, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG10924--CG30409\n  CG30409--Pvf1\n  CG30409--Roc2\n  CG30409--robl22E\n  CG30409--spir\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10211, CG11786, Vsx2, bcd, ci\n- Network density: approximately 0.70\n- Hub proteins (highly connected): ci, CG10211\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10211, CG11786, Vsx2, bcd, ci\n\nTWO-HYBRID INTERACTIONS:\n  CG10211--CG11786\n  CG10211--Vsx2\n  CG10211--bcd\n  CG10211--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti\n- Network density: approximately 0.73\n- Hub proteins (highly connected): GstD2, GstD1\n- Total interactions: approximately 33"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9, rti\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  GstD1--GstD1\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD7\n  GstD10--GstD2\n  GstD10--GstD7\n  GstD4--GstD6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD4\n  GstD1--GstD5\n  GstD1--GstD7\n  GstD1--GstD9\n  GstD1--rti\n  GstD10--GstD2\n  GstD10--GstD4\n  GstD10--GstD9\n  GstD2--GstD4\n  GstD2--GstD5\n  GstD2--GstD7\n  GstD2--GstD9\n  GstD4--GstD5\n  GstD4--GstD7\n  GstD4--GstD9\n  GstD4--rti\n  GstD5--GstD7\n  GstD5--GstD9\n  GstD7--GstD9\n  GstD9--rti\n  rti--rti\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GstD2--GstD2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  GstD2--GstD2\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri\n\nTWO-HYBRID INTERACTIONS:\n  CG10353--CG13296\n  CG10353--CG32100\n  CG10353--CG45057\n  CG10353--Nup93-1\n  CG10353--mri\n  CG32100--CG32100\n  mri--mri\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Swim, TBPH, cer, per, wg, zormin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Swim, TBPH, cer, per, wg, zormin\n\nTWO-HYBRID INTERACTIONS:\n  Swim--TBPH\n  Swim--cer\n  Swim--per\n  Swim--zormin\n  TBPH--TBPH\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Swim--wg\n  per--per\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  TBPH--TBPH\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n  per--per\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Swim--wg\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Cyp9f2--kat80\n  Kat60--Kat60\n  Kat60--kat80\n  NimC1--kat80\n  NimC1--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  kat80--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Kat60--kat80\n  Kat60--kat80\n  Patronin--kat80\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12620, CG16812, CG2926, CG7928, CTCF, Moe, eIF4E-7, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG12620--CG16812\n  CG16812--CG16812\n  CG16812--CG2926\n  CG16812--CG7928\n  CG16812--CTCF\n  CG16812--Moe\n  CG16812--eIF4E-7\n  CG16812--mle\n  CG2926--Moe\n  CG7928--CG7928\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n  CTCF--CTCF\n  Moe--Moe\n  mle--mle\n\nCO-FRACTIONATION INTERACTIONS:\n  CTCF--CTCF\n  CTCF--CTCF\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CTCF--CTCF\n\nPCA INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n\nNETWORK SUMMARY: 8 proteins, 27 interactions\n\nNew protein to integrate: CG3338\n\nPredict the interactions for CG3338:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG16812--CG3338"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: DAPK1, DDX39A, FANCC, MAGED1, UNC5A\n\nTWO-HYBRID INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--DDX39A\n  FANCC--FANCC\n  FANCC--UNC5A\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n  MAGED1--UNC5A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  MAGED1--UNC5A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--UNC5A\n  FANCC--UNC5A\n  FANCC--UNC5A\n  MAGED1--UNC5A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--UNC5A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX39A--DDX39A\n\nNETWORK SUMMARY: 5 proteins, 19 interactions\n\nNew protein to integrate: NTN1\n\nPredict the interactions for NTN1:"
-      },
-      {
-        "role": "assistant",
-        "content": "RECONSTITUTED COMPLEX INTERACTIONS:\n  NTN1--UNC5A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark\n- Network density: approximately 0.67\n- Hub proteins (highly connected): ptc, Src42A\n- Total interactions: approximately 30"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark\n\nTWO-HYBRID INTERACTIONS:\n  CG10651--Dok\n  CG11164--Dok\n  CG13928--Dok\n  Dok--Src42A\n  Dok--Src64B\n  Dok--ptc\n  Src64B--Src64B\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dok--puc\n  Dok--shark\n  Src42A--puc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Src42A--Src64B\n  Src42A--Src64B\n  Src42A--Src64B\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src42A--Src42A\n  Src42A--Src42A\n  Src42A--Src42A\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Dok--egl\n  Dok--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11407, IntS4, sgg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, IntS4, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  IntS4--sgg\n  IntS4--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11409, Med, gbb, sax, tkv, wit\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  sax--tkv\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--gbb\n  Med--sax\n  Med--tkv\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gbb--gbb\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--tkv\n  sax--sax\n  sax--tkv\n  sax--tkv\n  tkv--tkv\n\nCO-FRACTIONATION INTERACTIONS:\n  gbb--gbb\n\nNETWORK SUMMARY: 6 proteins, 27 interactions\n\nNew protein to integrate: spict\n\nPredict the interactions for spict:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11409--spict\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--spict\n  gbb--spict\n  sax--spict\n  spict--tkv\n  spict--wit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  spict--wit\n  spict--wit"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11409, CG33056, CG5555, Hrb27C, betaTub56D\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG33056, CG5555\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG5555, Hrb27C, betaTub56D\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG33056--CG5555\n  CG5555--CG5555\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33056--Hrb27C\n  CG33056--betaTub56D\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Blos2, CG10466, CG3407, CG5280, bin\n- Network density: approximately 0.60\n- Hub proteins (highly connected): Blos2, CG10466\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG10466, CG3407, CG5280, bin\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG10466\n  CG10466--CG5280\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10466--CG3407\n  CG10466--bin\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68\n\nTWO-HYBRID INTERACTIONS:\n  CG13551--GstT4\n  CG30497--GstT4\n  CG8032--GstT4\n  GstT4--Nup54\n  GstT4--Tektin-A\n  GstT4--dm\n  GstT4--mrn\n  GstT4--pUf68\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dm--pUf68\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dm--pUf68\n  dm--pUf68\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10869, CG9986, CoVa, nonA-l"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG9986, CoVa, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--CG9986\n  CG10869--CoVa\n  CG10869--nonA-l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Act5C, CG14579, Rab11, Rab4, spir"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG14579, Rab11, Rab4, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG14579--spir\n\nCO-FRACTIONATION INTERACTIONS:\n  Act5C--spir\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Act5C--spir\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Act5C--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Act5C--CG14579\n  Act5C--Rab11\n  CG14579--Rab11\n  CG14579--Rab11\n  CG14579--Rab4\n  Rab11--Rab4\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Gasp, obst-A, su(Hw)"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Gasp, obst-A, su(Hw)\n\nTWO-HYBRID INTERACTIONS:\n  Gasp--su(Hw)\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gasp--obst-A\n  Gasp--obst-A\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  su(Hw)--su(Hw)\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry\n\nTWO-HYBRID INTERACTIONS:\n  CG4896--La\n  CTPsyn--CTPsyn\n  GalNAc-T1--La\n  La--RpL13A\n  La--cpb\n\nCO-FRACTIONATION INTERACTIONS:\n  Sema-1a--Sema-1a\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  Sema-1a--Sema-1a\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--La\n  CTPsyn--RpL13A\n  La--cry\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33514, CG4896, CTPsyn, Cdc27, GalNAc-T1, La, RpL13A, Sema-1a, cpb, cry\n\nTWO-HYBRID INTERACTIONS:\n  CG33514--La\n  CG4896--La\n  CTPsyn--CTPsyn\n  Cdc27--La\n  GalNAc-T1--La\n  La--RpL13A\n  La--cpb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  La--Sema-1a\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Sema-1a--Sema-1a\n\nCO-FRACTIONATION INTERACTIONS:\n  Sema-1a--Sema-1a\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  Sema-1a--Sema-1a\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--La\n  CTPsyn--RpL13A\n  La--cry\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5144, Cib2, Cyp6a21, Cyp6a9, Pak, RhoGAP68F, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG5144--Cyp6a9\n  Cib2--Cyp6a9\n  Cyp6a9--Pak\n  Cyp6a9--RhoGAP68F\n  Cyp6a9--nej\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a21--Cyp6a9\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG6443, RpS24\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG15036--CG6443\n  CG6443--Mpc1\n  CG6443--Nha1\n  CG6443--RpL3\n  CG6443--RpS24\n  CG6443--Sec24CD\n  CG6443--ebo\n  CG6443--mRpS18B\n  CG6443--mts\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL3--RpS24\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bap60, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG14543\n  CG14543--CG42565\n  CG14543--HLH4C\n  CG14543--N\n  CG14543--RpS26\n  CG14543--Sps2\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14543--Rae1\n  CG14543--Treh\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  Rae1--Treh\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 9 proteins, 129 interactions\n\nNew protein to integrate: CG14153\n\nPredict the interactions for CG14153:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14153--CG14543"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG14853, spas\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14853, CG15365, CG6287, CG7386, CG8349, Cpr50Ca, Gclm, RpL7, morgue, spas\n\nTWO-HYBRID INTERACTIONS:\n  CG14853--CG15365\n  CG14853--CG6287\n  CG14853--CG7386\n  CG14853--CG8349\n  CG14853--Cpr50Ca\n  CG14853--Gclm\n  CG14853--RpL7\n  CG14853--morgue\n  CG14853--spas\n  CG7386--CG7386\n  CG8349--CG8349\n\nCO-FRACTIONATION INTERACTIONS:\n  spas--spas\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spas--spas\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th\n\nTWO-HYBRID INTERACTIONS:\n  CG14453--Lsd-1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lsd-1--Lsd-2\n  Lsd-1--mrt\n  Lsd-1--th\n  Lsd-2--bmm\n  Lsd-2--bmm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--Lsd-2\n  Lsd-1--Lsd-2\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  th--th\n\nPCA INTERACTIONS:\n  CG11700--Lsd-1\n  CG11700--Lsd-2\n  Jabba--Jabba\n  Jabba--Lsd-1\n  Lsd-1--Ubi-p5E\n  Lsd-2--Ubi-p5E\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO2, CG12985, CG30393, CG8368, Dcr-2, Elp1, Elp3, roX1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Elp1\n  CG30393--Elp1\n  CG8368--Elp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Dcr-2\n  AGO2--Dcr-2\n  AGO2--Elp1\n  AGO2--Elp1\n  Dcr-2--Dcr-2\n  Dcr-2--Elp1\n  Dcr-2--Elp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--rti\n  Elp1--Elp3\n  Elp1--rti\n  Elp3--rti\n  rti--rti\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  AGO2--roX1\n  Dcr-2--roX1\n  Elp1--roX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  AGO2--Dcr-2\n  Elp3--Elp3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 9 proteins, 24 interactions\n\nNew protein to integrate: Dcr-1\n\nPredict the interactions for Dcr-1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--Dcr-1\n  AGO2--Dcr-1\n  Dcr-1--Elp1\n  Dcr-1--Elp1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11164, CG2199, CG7849, CG7974, Oda, Traf6\n- Network density: approximately 0.67\n- Hub proteins (highly connected): Traf6, CG7974\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG2199, CG7849, CG7974, Oda, Traf6\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG7974\n  CG2199--CG7974\n  CG7849--CG7974\n  CG7974--Oda\n  CG7974--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 6 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10721, CG1503, Hdac3, W, rpr\n- Network density: approximately 1.30\n- Hub proteins (highly connected): rpr, W\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, Hdac3, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG1503--Hdac3\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG1503--W\n  CG1503--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10139, PK2-R1, PK2-R2, TrpA1\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n\nNETWORK SUMMARY: 4 proteins, 1 interactions\n\nNew protein to integrate: Hug\n\nPredict the interactions for Hug:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10139--Hug\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Hug--PK2-R1\n  Hug--PK2-R2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hug--TrpA1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13321, CG15337, Noa36, Traf-like\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: CG3062\n\nPredict the interactions for CG3062:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13321--CG3062\n  CG15337--CG3062\n  CG3062--Noa36\n  CG3062--Traf-like"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG42588, Cks85A, Tequila, vnd"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42588, Cks85A, Tequila, vnd\n\nTWO-HYBRID INTERACTIONS:\n  CG42588--Cks85A\n  CG42588--Tequila\n  CG42588--vnd\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53\n- Network density: approximately 0.43\n- Hub proteins (highly connected): p53, CG1137\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11248--CG1137\n  CG1137--CG4325\n  CG1137--Git\n  CG1137--Pi3K21B\n  CG1137--RanBPM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG1137--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10949, CG14110, CG9948, wdb\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG9948, CG10949\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10949, CG14110, CG9948, wdb\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG9948\n  CG14110--CG9948\n  CG9948--wdb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10754, CG18522, CG31955, Mst87F, dar1, hale, kn, nudE, sw\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG18522--dar1\n  CG18522--hale\n  CG31955--dar1\n  Mst87F--dar1\n  Mst87F--hale\n  dar1--hale\n  hale--hale\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dar1--kn\n  dar1--nudE\n  dar1--sw\n\nCO-FRACTIONATION INTERACTIONS:\n  kn--kn\n  nudE--sw\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  nudE--sw\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG5674\n\nPredict the interactions for CG5674:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5674--dar1\n  CG5674--hale"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG4461\n  CG30324--CG4461\n  CG4461--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4461--Hsp60\n  CG4461--HtrA2\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG17666--CG4116\n  CG4116--CG9572\n  CG4116--CIAPIN1\n  CG4116--P32\n  CG4116--P32\n  CG4116--SmD1\n  CG4116--fok\n  CG4116--gro\n  CG4116--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CIAPIN1--CIAPIN1\n  P32--P32\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  CIAPIN1--CIAPIN1\n\nNETWORK SUMMARY: 9 proteins, 23 interactions\n\nNew protein to integrate: CG1486\n\nPredict the interactions for CG1486:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1486--CG4116"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n- Network density: approximately 0.24\n- Hub proteins (highly connected): Galk, rdx\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atpalpha, CG11327, CG4835, CG9986, Galk, Galt, Pp2B-14D, intr, mbc, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Atpalpha--Galk\n  CG11327--Galk\n  CG4835--Galk\n  CG9986--Galk\n  Galk--intr\n  Galk--mbc\n  Galk--rdx\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galk--Pp2B-14D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n\nTWO-HYBRID INTERACTIONS:\n  ARNT2--NPAS4\n  ARNTL--NPAS4\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARNT2--MAGED1\n  ARNT2--NPAS4\n  MAGED1--NPAS4\n\nFRET INTERACTIONS:\n  ARNT2--MAGED1\n  MAGED1--NPAS4\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NPAS4--TCP1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ARNTL--ARNTL\n\nNETWORK SUMMARY: 5 proteins, 11 interactions\n\nNew protein to integrate: ARNT\n\nPredict the interactions for ARNT:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ARNT--NPAS4\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ARNT--ARNT\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARNT--ARNT\n  ARNT--NPAS4\n\nFRET INTERACTIONS:\n  ARNT--ARNT\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ARNT--ARNT"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok\n- Network density: approximately 0.78\n- Hub proteins (highly connected): Br140, CG16838\n- Total interactions: approximately 35"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok\n\nTWO-HYBRID INTERACTIONS:\n  Br140--CG16838\n  CG17244--CG9293\n  CG32809--CG9293\n  CG7997--CG9293\n  CG9293--GM130\n  CG9293--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG16838--enok\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG9293\n  Br140--CG9293\n  Br140--CG9293\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--enok\n  Br140--enok\n  Br140--enok\n  CG16838--CG9293\n  CG16838--Eaf6\n  CG16838--enok\n  CG16838--enok\n  CG9293--Eaf6\n  CG9293--Eaf6\n  CG9293--enok\n  CG9293--enok\n  Eaf6--enok\n  Eaf6--enok\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  CG16838--enok\n  CG16838--enok\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Br140--enok\n\nNETWORK SUMMARY: 10 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--mex1\n  CG14074--CG14074\n  CG14074--lwr\n  CG14074--mex1\n  CG8909--mex1\n  Syt12--mex1\n  Syt12--ninaD\n  lwr--lwr\n  lwr--lwr\n  mex1--ninaD\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--mex1\n  CG13704--mex1\n  CG14074--CG14074\n  CG14074--lwr\n  CG14074--mex1\n  CG8083--mex1\n  CG8909--mex1\n  Syt12--mex1\n  Syt12--ninaD\n  ZnT41F--ZnT41F\n  ZnT41F--mex1\n  lwr--lwr\n  lwr--lwr\n  lwr--mex1\n  mex1--ninaD\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2082, CG30417, Pp4-19C, Taf10b, sa, tbrd-1\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--sa\n  CG30417--sa\n  CG30417--tbrd-1\n  CG30417--tbrd-1\n  Taf10b--sa\n  sa--tbrd-1\n  tbrd-1--tbrd-1\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pp4-19C--sa\n\nNETWORK SUMMARY: 6 proteins, 10 interactions\n\nNew protein to integrate: ZAP3\n\nPredict the interactions for ZAP3:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  ZAP3--sa"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri\n- Network density: approximately 0.43\n- Hub proteins (highly connected): Tm1, yuri\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri\n\nTWO-HYBRID INTERACTIONS:\n  CG14684--yuri\n  IP3K2--yuri\n  Rbp6--yuri\n  Tm1--Tm1\n  Ubx--yuri\n  lark--yuri\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tm1--yuri\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg\n- Network density: approximately 0.62\n- Hub proteins (highly connected): orb2, CG13928\n- Total interactions: approximately 28"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10527--CG13321\n  CG10527--CG13928\n  CG13321--CG13928\n  CG13928--CG2199\n  CG13928--Dok\n  CG13928--Obp56d\n  CG13928--imd\n  CG13928--osa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13928--orb2\n  CG13928--orb2\n  CG13928--smg\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--smg\n  orb2--smg\n  osa--osa\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13928--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  imd--imd\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nCO-FRACTIONATION INTERACTIONS:\n  imd--imd\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  imd--imd\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup\n- Network density: approximately 0.48\n- Hub proteins (highly connected): CG7381, CG15422\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15422, CG17777, CG34168, CG3708, CG7381, CG8854, caup\n\nTWO-HYBRID INTERACTIONS:\n  CG15422--CG15422\n  CG15422--CG17777\n  CG15422--CG7381\n  CG17777--CG34168\n  CG17777--CG7381\n  CG34168--CG7381\n  CG3708--CG7381\n  CG7381--CG8854\n  CG7381--caup\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  caup--caup\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7724, Hsl, heph\n\nTWO-HYBRID INTERACTIONS:\n  CG7724--Hsl\n  CG7724--heph\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG4661\n\nPredict the interactions for CG4661:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG4661--CG7724"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG17003\n  CG13197--CG17003\n  CG1344--CG17003\n  CG17003--CG5445\n  CG17003--CG5447\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: Ref1\n\nPredict the interactions for Ref1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17003--Ref1\n  Ref1--Ref1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe\n\nTWO-HYBRID INTERACTIONS:\n  CG3880--toe\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--eyg\n  eyg--fng\n  eyg--toe\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15098--toe\n  fzy--toe\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe\n\nTWO-HYBRID INTERACTIONS:\n  CG17186--toe\n  CG3880--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--eyg\n  N--eyg\n  N--eyg\n  N--fng\n  N--fng\n  N--fng\n  N--fng\n  N--toe\n  eyg--fng\n  eyg--toe\n  fng--toe\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  N--fng\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15098--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  fzy--toe\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 8 proteins, 136 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2091, CG8117, Hsp22, RpII18, Taf10b\n\nTWO-HYBRID INTERACTIONS:\n  CG2091--RpII18\n  Hsp22--RpII18\n  RpII18--Taf10b\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--RpII18\n\nNETWORK SUMMARY: 5 proteins, 6 interactions\n\nNew protein to integrate: CG10164\n\nPredict the interactions for CG10164:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10164--RpII18"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri\n\nTWO-HYBRID INTERACTIONS:\n  CG10353--CG32100\n  CG10353--CG45057\n  CG10353--Nup93-1\n  CG10353--mri\n  CG32100--CG32100\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10353, CG13296, CG32100, CG45057, Nup93-1, mri\n\nTWO-HYBRID INTERACTIONS:\n  CG10353--CG13296\n  CG10353--CG32100\n  CG10353--CG45057\n  CG10353--Nup93-1\n  CG10353--mri\n  CG32100--CG32100\n  mri--mri\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG5844, Akt1\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3\n\nTWO-HYBRID INTERACTIONS:\n  Acer--CG5844\n  Akt1--Akt1\n  CG5611--CG5844\n  CG5844--spz3\n  ade5--ade5\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--CG5844\n  AnxB10--CG5844\n  AnxB10--Prx2540-2\n  CG5844--Prx2540-2\n  CG5844--ade5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5844--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG13043\n  CG13043--CG6380\n  CG13043--Sld5\n  CG13043--fd59A\n  CG13043--spi\n  CG13043--sxc\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG13043\n  CG11350--sxc\n  CG13043--CG4896\n  CG13043--CG6353\n  CG13043--CG6380\n  CG13043--Sld5\n  CG13043--fd59A\n  CG13043--spi\n  CG13043--sxc\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10681\n  CG10635--CG10914\n  CG10635--SIP3\n  CG10681--CG10681\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  CG7048--mgr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10635--CG13993\n  CG10635--CG7048\n  CG10635--CG7770\n  CG10635--l(3)01239\n  CG10635--mgr\n  CG10635--mst\n  CG13993--CG7048\n  CG13993--CG7770\n  CG13993--l(3)01239\n  CG13993--mgr\n  CG13993--mst\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--mgr\n  CG7048--mst\n  CG7770--l(3)01239\n  CG7770--mgr\n  CG7770--mst\n  l(3)01239--mgr\n  l(3)01239--mst\n  mgr--mst\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  l(3)01239--mgr\n  l(3)01239--mgr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  l(3)01239--mgr\n  l(3)01239--mgr\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG32486, Obp58c, ScpX, ref(2)P"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32486, Obp58c, ScpX, ref(2)P\n\nTWO-HYBRID INTERACTIONS:\n  CG32486--CG32486\n  CG32486--ScpX\n  CG32486--ScpX\n  Obp58c--ScpX\n  ScpX--ref(2)P\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ref(2)P--ref(2)P\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th\n- Network density: approximately 0.44\n- Hub proteins (highly connected): Lsd-1, th\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11700, CG14453, Hsl, Jabba, Lsd-1, Lsd-2, Ubi-p5E, bmm, mrt, th\n\nTWO-HYBRID INTERACTIONS:\n  CG14453--Lsd-1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lsd-1--Lsd-2\n  Lsd-1--mrt\n  Lsd-1--th\n  Lsd-2--bmm\n  Lsd-2--bmm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--Lsd-2\n  Lsd-1--Lsd-2\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  th--th\n\nPCA INTERACTIONS:\n  CG11700--Lsd-1\n  CG11700--Lsd-2\n  Jabba--Jabba\n  Jabba--Lsd-1\n  Lsd-1--Ubi-p5E\n  Lsd-2--Ubi-p5E\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A\n\nTWO-HYBRID INTERACTIONS:\n  COL23A1--EXOSC8\n  COL23A1--LSM8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  HNRNPL--HNRNPL\n\nDOSAGE RESCUE INTERACTIONS:\n  LSM8--LSM8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HNRNPL--HNRNPL\n  PLOD2--PLOD2\n  PLOD3--PLOD3\n\nCO-FRACTIONATION INTERACTIONS:\n  COLGALT1--PLOD2\n  COLGALT1--PLOD3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  COL23A1--COLGALT1\n  COL23A1--PLOD2\n  COL23A1--PLOD3\n  COLGALT1--PLOD3\n  HIST1H1E--HIST1H4A\n  HIST1H1E--RPL10A\n  HIST1H1E--RPL10A\n  HIST1H4A--HNRNPL\n  HIST1H4A--RPL10A\n  PLOD2--PLOD3\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  COL23A1--HNRNPL\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--HIST1H1E\n  COL23A1--HIST1H4A\n  COL23A1--RPL10A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HIST1H4A\n  HIST1H4A--HIST1H4A\n  RPL10A--RPL10A\n\nNETWORK SUMMARY: 10 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10298, Mf, rec, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--Mf\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10298--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, Mf, rec, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--Mf\n  CG10298--rec\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10298--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5147, Crk, Sin, Sxl, ftz\n\nTWO-HYBRID INTERACTIONS:\n  Crk--Sin\n  Sin--Sxl\n  Sin--ftz\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sin--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5147, Crk, Sin, Sxl, ftz\n\nTWO-HYBRID INTERACTIONS:\n  CG5147--Sin\n  Crk--Sin\n  Sin--Sxl\n  Sin--ftz\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sin--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG17003, Ref1\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG17003\n  CG13197--CG17003\n  CG1344--CG17003\n  CG17003--CG5445\n  CG17003--CG5447\n  CG17003--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n\nTWO-HYBRID INTERACTIONS:\n  CG18624--CG5114\n  CG18624--Cpr92F\n  CG18624--Hsc70-4\n  CG18624--mam\n  CG18624--trol\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: CG10559\n\nPredict the interactions for CG10559:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10559--CG18624"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATPsyn-beta, CG10340, CG17230, LIMK1\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--CG10340\n  CG10340--CG17230\n  CG10340--LIMK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--CG10340\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10340, CG17230, LIMK1\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--CG10340\n  CG10340--CG17230\n  CG10340--LIMK1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LIMK1--LIMK1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--CG10340\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  AGO2--PIG-S\n  BM-40-SPARC--PIG-S\n  BM-40-SPARC--Vsx2\n  CG44009--PIG-S\n  CG4848--PIG-S\n  Hsc70-4--PIG-S\n  PIG-S--Pdh\n  PIG-S--Prosbeta2\n  PIG-S--Vsx2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n  CG11190--PIG-S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Pdh--Pdh\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10321, CG12576, CG42359, Tsp42Ek, zf30C\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Tsp42Ek, CG10321\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG12576, CG42359, Tsp42Ek, zf30C\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--Tsp42Ek\n  CG12576--Tsp42Ek\n  CG42359--Tsp42Ek\n  Tsp42Ek--zf30C\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10164, CG4335, CG7488, Traf6, vir-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG4335, CG7488, Traf6, vir-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG7488\n  CG4335--CG4335\n  CG4335--CG7488\n  CG4335--CG7488\n  CG7488--Traf6\n  CG7488--vir-1\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 5 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11248, CG1137, CG4325, Git, Pi3K21B, RanBPM, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11248--CG1137\n  CG1137--CG4325\n  CG1137--Git\n  CG1137--Pi3K21B\n  CG1137--RanBPM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG1137--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs\n\nTWO-HYBRID INTERACTIONS:\n  CG10237--CG6180\n  CG10237--CG9796\n  CG10237--CG9825\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10237--CG2254\n  CG10237--CG34205\n  CG10237--CG7979\n  CG10237--Pli\n  CG34205--Pli\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pli--Pli\n\nPCA INTERACTIONS:\n  CG2254--CG2254\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6180--Tom20\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10237, CG2254, CG34205, CG6180, CG7979, CG9796, CG9825, Pli, Tom20, cbs\n\nTWO-HYBRID INTERACTIONS:\n  CG10237--CG6180\n  CG10237--CG9796\n  CG10237--CG9825\n  CG10237--cbs\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10237--CG2254\n  CG10237--CG34205\n  CG10237--CG7979\n  CG10237--Pli\n  CG34205--CG7979\n  CG34205--Pli\n  CG7979--Pli\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pli--Pli\n\nPCA INTERACTIONS:\n  CG2254--CG2254\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10237--Tom20\n  CG6180--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10947, CG32354, Vm26Aa, neur\n\nTWO-HYBRID INTERACTIONS:\n  CG10947--CG32354\n  CG10947--Vm26Aa\n  neur--neur\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  neur--neur\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10947, CG32354, Vm26Aa, neur\n\nTWO-HYBRID INTERACTIONS:\n  CG10947--CG32354\n  CG10947--Vm26Aa\n  CG10947--neur\n  neur--neur\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  neur--neur\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15\n- Network density: approximately 0.42\n- Hub proteins (highly connected): DYRK1A, ATRNL1\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATRNL1, DEFB135, DYRK1A, FAM19A2, HNRNPU, HYOU1, LCOR, MC4R, RNF157, ZDHHC15\n\nTWO-HYBRID INTERACTIONS:\n  ATRNL1--DYRK1A\n  ATRNL1--LCOR\n  ATRNL1--MC4R\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DYRK1A--DYRK1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATRNL1--DEFB135\n  ATRNL1--FAM19A2\n  ATRNL1--HYOU1\n  ATRNL1--RNF157\n  ATRNL1--ZDHHC15\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--DYRK1A\n  DYRK1A--HNRNPU\n  DYRK1A--HYOU1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATRNL1--HNRNPU\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HNRNPU--HNRNPU\n  HNRNPU--HNRNPU\n  HYOU1--HYOU1\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w\n\nTWO-HYBRID INTERACTIONS:\n  CG31036--cm\n  CG4554--cm\n  Or98b--cm\n  Slip1--cm\n  Taf6--cm\n  Treh--cm\n  Usf--cm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Blos1--cm\n  Blos1--cm\n  cm--w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Blos1--w\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11275, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--CG15578\n  CG11275--Chi\n  CG11275--Chi\n  CG13168--CG15578\n  CG15578--CG9083\n  CG15578--Chi\n  CG15578--HLH4C\n  CG15578--Trn-SR\n  CG15578--cp309\n  CG15578--mbo\n  cp309--cp309\n  cp309--cp309\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG12995\n\nPredict the interactions for CG12995:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12995--CG15578"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b\n- Network density: approximately 0.47\n- Hub proteins (highly connected): RpII18, Hsp22\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--RpII18\n  CG2091--RpII18\n  Hsp22--RpII18\n  RpII18--Taf10b\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--RpII18\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3397, CG6733, CoIV, ng2\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: CG11790\n\nPredict the interactions for CG11790:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11790--CG3397\n  CG11790--CG6733\n  CG11790--CoIV\n  CG11790--ng2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Aatf, FK506-bp1, l(2)34Fd, sina\n- Network density: approximately 2.33\n- Hub proteins (highly connected): FK506-bp1, sina\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aatf, FK506-bp1, l(2)34Fd, sina\n\nTWO-HYBRID INTERACTIONS:\n  Aatf--l(2)34Fd\n  FK506-bp1--FK506-bp1\n  l(2)34Fd--sina\n  sina--sina\n  sina--sina\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sina--sina\n  sina--sina\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aatf--FK506-bp1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--l(2)34Fd\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 4 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG4983, mahj\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG4983\n  CG13741--CG4983\n  CG4983--mahj\n  CG4983--ms(3)76Ca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4983--alpha4GT1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Aatf, FK506-bp1, l(2)34Fd, sina\n\nTWO-HYBRID INTERACTIONS:\n  Aatf--l(2)34Fd\n  FK506-bp1--FK506-bp1\n  l(2)34Fd--sina\n  sina--sina\n  sina--sina\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--l(2)34Fd\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 4 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aatf, FK506-bp1, l(2)34Fd, sina\n\nTWO-HYBRID INTERACTIONS:\n  Aatf--l(2)34Fd\n  FK506-bp1--FK506-bp1\n  l(2)34Fd--sina\n  sina--sina\n  sina--sina\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sina--sina\n  sina--sina\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aatf--FK506-bp1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--l(2)34Fd\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 4 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr\n- Network density: approximately 0.53\n- Hub proteins (highly connected): CG10440, lwr\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG10440, CG14074, CG2611, CG32354, Doc3, PICK1, TfAP-2, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CAP--CG10440\n  CG10440--CG10440\n  CG10440--CG14074\n  CG10440--CG32354\n  CG10440--PICK1\n  CG10440--TfAP-2\n  CG10440--lwr\n  CG10440--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  PICK1--PICK1\n  lwr--lwr\n  lwr--lwr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10440--TfAP-2\n  CG10440--TfAP-2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n  PICK1--PICK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10440--CG2611\n  CG10440--Doc3\n\nNETWORK SUMMARY: 9 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5\n- Network density: approximately 0.36\n- Hub proteins (highly connected): eIF2B-beta, Ada2b\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ada2b, CG11876, CG15169, CG15478, eIF2B-beta, eIF2B-delta, inv, nop5\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--eIF2B-beta\n  CG11876--CG11876\n  CG11876--eIF2B-beta\n  CG15169--eIF2B-beta\n  CG15478--eIF2B-beta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-beta--inv\n  eIF2B-beta--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n- Network density: approximately 0.36\n- Hub proteins (highly connected): AnxB11, CG10465\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  AnxB11--CG12857\n  AnxB11--CG13321\n  AnxB11--CG14408\n  AnxB11--CG2199\n  AnxB11--Hrs\n  AnxB11--Rm62\n  AnxB11--Srp68\n  AnxB11--mei-S332\n  CG10465--CG10465\n  CG10465--CG10465\n  CG2199--Srp68\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG30393, CG44001, Elp1, jbug\n\nTWO-HYBRID INTERACTIONS:\n  CG30393--CG44001\n  CG30393--jbug\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG30393, CG44001, Elp1, jbug\n\nTWO-HYBRID INTERACTIONS:\n  CG30393--CG44001\n  CG30393--Elp1\n  CG30393--jbug\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav\n\nTWO-HYBRID INTERACTIONS:\n  CG15022--CG2258\n  CG15022--Cip4\n  CG15022--Dap160\n  CG15022--Dys\n  CG15022--Ptp52F\n  CG15022--Tsp\n  CG15022--sav\n  Cip4--Cip4\n\nFRET INTERACTIONS:\n  sav--sav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav\n\nTWO-HYBRID INTERACTIONS:\n  CG15022--CG2258\n  CG15022--Cip4\n  CG15022--Dap160\n  CG15022--Dys\n  CG15022--NimB4\n  CG15022--Ptp52F\n  CG15022--Tsp\n  CG15022--dock\n  CG15022--sav\n  Cip4--Cip4\n  dock--dock\n\nFRET INTERACTIONS:\n  sav--sav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n\nTWO-HYBRID INTERACTIONS:\n  CG12428--CG3529\n  CG3529--CG9795\n  CG3529--MED8\n  CG3529--NC2alpha\n  CG3529--Syx7\n  CG3529--Wbp2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12024--CG3529\n  CG3529--jar\n  CG3529--osk\n  MED8--MED8\n  jar--osk\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG3529--jar\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: HDAC7, JAK3, SMAD4, TIAF1, TP53, TRIB3\n\nTWO-HYBRID INTERACTIONS:\n  HDAC7--TIAF1\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TIAF1--TRIB3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-PURIFICATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  JAK3--TIAF1\n  SMAD4--SMAD4\n  TIAF1--TRIB3\n  TIAF1--TRIB3\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nFRET INTERACTIONS:\n  SMAD4--TIAF1\n  TIAF1--TIAF1\n  TIAF1--TP53\n  TP53--TP53\n  TP53--TP53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  HDAC7--HDAC7\n  SMAD4--SMAD4\n  SMAD4--SMAD4\n  TP53--TP53\n  TP53--TP53\n  TRIB3--TRIB3\n\nCO-FRACTIONATION INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n  TP53--TP53\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TP53--TP53\n  TP53--TP53\n\nNETWORK SUMMARY: 6 proteins, 54 interactions\n\nNew protein to integrate: WWOX\n\nPredict the interactions for WWOX:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  SMAD4--WWOX\n  TP53--WWOX\n  TP53--WWOX\n  WWOX--WWOX\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TIAF1--WWOX\n  TIAF1--WWOX\n  TP53--WWOX\n  TP53--WWOX\n  TP53--WWOX\n\nFRET INTERACTIONS:\n  SMAD4--WWOX\n  TP53--WWOX"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13321, CG15337, CG3062, Noa36, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG15337--CG3062\n  CG3062--Noa36\n  CG3062--Traf-like\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13321, CG15337, CG3062, Noa36, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG13321--CG3062\n  CG15337--CG3062\n  CG3062--Noa36\n  CG3062--Traf-like\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG9426, HipHop, Spred, ms(3)K81\n\nTWO-HYBRID INTERACTIONS:\n  CG9426--CG9426\n  CG9426--ms(3)K81\n  Spred--ms(3)K81\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  HipHop--ms(3)K81\n  HipHop--ms(3)K81\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: grp\n\nPredict the interactions for grp:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  grp--ms(3)K81\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1138, Snx1, l(2)37Cg, nudE, scramb2\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG1138, l(2)37Cg\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1138, Snx1, l(2)37Cg, nudE, scramb2\n\nTWO-HYBRID INTERACTIONS:\n  CG1138--Snx1\n  CG1138--l(2)37Cg\n  CG1138--nudE\n  CG1138--scramb2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: BPY2, MAP1S, UBE3A\n\nTWO-HYBRID INTERACTIONS:\n  BPY2--MAP1S\n  BPY2--UBE3A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BPY2--MAP1S\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BPY2--UBE3A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nNETWORK SUMMARY: 3 proteins, 32 interactions\n\nNew protein to integrate: PPIA\n\nPredict the interactions for PPIA:"
-      },
-      {
-        "role": "assistant",
-        "content": "PROXIMITY LABEL-MS INTERACTIONS:\n  BPY2--PPIA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  PPIA--PPIA\n  PPIA--UBE3A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PPIA--PPIA\n  PPIA--PPIA"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAP, CG14965, CG17470, CG30409, CG4198, H2.0, Idgf4, Prosbeta3, robl22E, whd\n\nTWO-HYBRID INTERACTIONS:\n  CAP--robl22E\n  CG14965--robl22E\n  CG17470--robl22E\n  CG30409--robl22E\n  CG4198--robl22E\n  H2.0--robl22E\n  Idgf4--robl22E\n  Prosbeta3--robl22E\n  robl22E--whd\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG10721--CG4045\n  CG10721--CG4293\n  CG10721--Pgd\n  CG10721--RpS20\n  CG10721--mtDNA-helicase\n\nNETWORK SUMMARY: 7 proteins, 6 interactions\n\nNew protein to integrate: l(2)efl\n\nPredict the interactions for l(2)efl:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10721--l(2)efl\n  l(2)efl--l(2)efl\n  l(2)efl--l(2)efl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10834, CG10927, CG11249, robl62A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10834, CG10927, CG11249, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10834--robl62A\n  CG10927--robl62A\n  CG11249--robl62A\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu\n- Network density: approximately 0.58\n- Hub proteins (highly connected): Flo1, fu\n- Total interactions: approximately 26"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG10732, CG6259, Flo1, Flo2, NimC1, Sesn, Vps2, chico, fu\n\nTWO-HYBRID INTERACTIONS:\n  Flo1--NimC1\n  Flo1--Sesn\n  Flo1--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10103--CG10732\n  CG10103--CG6259\n  CG10103--Flo1\n  CG10103--Flo2\n  CG10103--Vps2\n  CG10103--chico\n  CG10732--CG6259\n  CG10732--Flo1\n  CG10732--Flo2\n  CG10732--chico\n  CG6259--Flo1\n  CG6259--Flo2\n  CG6259--Vps2\n  CG6259--chico\n  Flo1--Flo2\n  Flo1--Vps2\n  Flo1--chico\n  Flo2--chico\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10103--CG6259\n  Flo1--Flo2\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG17265--CG45105\n  CG43143--CG45105\n  CG45105--Pp1-87B\n  CG45105--coro\n  CG45105--homer\n\nNAN INTERACTIONS:\n  Fas2--lva\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG43143--Fas2\n  CG43143--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG17265--CG17265\n  CG17265--CG45105\n  CG43143--CG45105\n  CG45105--Kap-alpha3\n  CG45105--Pp1-87B\n  CG45105--coro\n  CG45105--homer\n  CG45105--mbo\n\nNAN INTERACTIONS:\n  CG45105--lva\n  Fas2--lva\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG43143--Fas2\n  CG43143--Fas2\n  CG45105--Fas2\n  CG45105--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Acp26Aa, AdipoR, CG1418, CG8997, Hsp23, Hsp26, Mes4, cpa, debcl\n\nTWO-HYBRID INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n  Acp26Aa--AdipoR\n  AdipoR--CG1418\n  AdipoR--CG8997\n  AdipoR--Hsp23\n  AdipoR--Hsp26\n  AdipoR--Mes4\n  AdipoR--cpa\n  AdipoR--debcl\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp23--Hsp26\n\nCO-FRACTIONATION INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Acp26Aa--Acp26Aa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Hsp23--Hsp26\n  Hsp23--Hsp26\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: Chrac-16\n\nPredict the interactions for Chrac-16:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  AdipoR--Chrac-16"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG33052, CtBP, Ercc1, Rab6, Sas-6\n\nTWO-HYBRID INTERACTIONS:\n  CG33052--CtBP\n  CG33052--Ercc1\n  CtBP--CtBP\n  Sas-6--Sas-6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33052--Rab6\n  CG33052--Sas-6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33052--Sas-6\n  CG33052--Sas-6\n  CtBP--CtBP\n  CtBP--CtBP\n\nCO-FRACTIONATION INTERACTIONS:\n  Sas-6--Sas-6\n\nNETWORK SUMMARY: 5 proteins, 11 interactions\n\nNew protein to integrate: Rcd-1r\n\nPredict the interactions for Rcd-1r:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG33052--Rcd-1r"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11382, CG1598, CG3838, CG42820, CG6357, pip\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG1598--CG3838\n  CG1598--CG42820\n  CG1598--CG6357\n  CG1598--pip\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: Shroom\n\nPredict the interactions for Shroom:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1598--Shroom\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Shroom--Shroom\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Shroom--Shroom\n\nCO-FRACTIONATION INTERACTIONS:\n  Shroom--Shroom"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Jwa, alphaCOP, epsilonCOP, fra, rti\n\nTWO-HYBRID INTERACTIONS:\n  alphaCOP--epsilonCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaCOP--rti\n  fra--fra\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  alphaCOP--rti\n  epsilonCOP--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Jwa, alphaCOP, epsilonCOP, fra, rti\n\nTWO-HYBRID INTERACTIONS:\n  Jwa--epsilonCOP\n  alphaCOP--epsilonCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaCOP--rti\n  fra--fra\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  alphaCOP--rti\n  epsilonCOP--fra\n  epsilonCOP--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG4576, FucTB, Or45a, Ref1\n- Network density: approximately 0.67\n- Hub proteins (highly connected): Ref1, Or45a\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4576, FucTB, Or45a, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG4576--Or45a\n  FucTB--Or45a\n  Or45a--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--CG33017\n  Arp5--Rap2l\n  Arp5--rasp\n  Arp5--spz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp5--CG12659\n  Arp5--CG12659\n  Arp5--pho\n\nCO-LOCALIZATION INTERACTIONS:\n  spz--spz\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--CG33017\n  Arp5--CSN4\n  Arp5--Rap2l\n  Arp5--rasp\n  Arp5--spz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp5--CG12659\n  Arp5--CG12659\n  Arp5--pho\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  spz--spz\n\nCO-FRACTIONATION INTERACTIONS:\n  spz--spz\n  spz--spz\n  spz--spz\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spz--spz\n\nCO-LOCALIZATION INTERACTIONS:\n  spz--spz\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  spz--spz\n  spz--spz\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n\nTWO-HYBRID INTERACTIONS:\n  C15--Cpr67Fa2\n  CG12182--Cpr67Fa2\n  CG13843--CG13843\n  CG13843--Cpr67Fa2\n  CG18563--Cpr67Fa2\n  CG4328--Cpr67Fa2\n  CG6688--Cpr67Fa2\n  CG8907--Cpr67Fa2\n  Cpr67Fa2--D\n  Cpr67Fa2--prt\n  D--D\n  D--D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2144, CG7911, Gadd45, Hnf4, PCNA, Rcd-1r, Smg5, so\n\nTWO-HYBRID INTERACTIONS:\n  CG2144--Gadd45\n  CG7911--Gadd45\n  Gadd45--Hnf4\n  Gadd45--PCNA\n  Gadd45--Rcd-1r\n  Gadd45--so\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7911--PCNA\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--Smg5\n\nNETWORK SUMMARY: 8 proteins, 19 interactions\n\nNew protein to integrate: hep\n\nPredict the interactions for hep:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gadd45--hep"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10341, Nup58, Pms2, Poxm, Prp19, Vdup1, mbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10341--Nup58\n  CG10341--Pms2\n  CG10341--Poxm\n  CG10341--Prp19\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10341--mbl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  mbl--mbl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10341--Vdup1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l\n- Network density: approximately 0.38\n- Hub proteins (highly connected): nonA-l, Klc\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG5376, CG6425, CG8128, Klc, dos, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--nonA-l\n  CG5376--CG5376\n  CG5376--nonA-l\n  CG6425--nonA-l\n  CG8128--nonA-l\n  Klc--Klc\n  Klc--nonA-l\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dos--nonA-l\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10822--CG12470\n  CG10822--CG6576\n  CG10822--CG7231\n  CG10822--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10822, CG12470, CG3085, CG6576, CG7231, Drep-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10822--CG12470\n  CG10822--CG3085\n  CG10822--CG6576\n  CG10822--CG7231\n  CG10822--Drep-1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG13197--CG17003\n  CG1344--CG17003\n  CG17003--CG5445\n  CG17003--CG5447\n  CG17003--Ref1\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG13197, CG1344, CG17003, CG5445, CG5447, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG17003\n  CG13197--CG17003\n  CG1344--CG17003\n  CG17003--CG5445\n  CG17003--CG5447\n  CG17003--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--ko\n  CG8407--ko\n  Cdlc2--ko\n  cactin--ko\n  ctp--ko\n  ko--polo\n  ko--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11883, CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n\nTWO-HYBRID INTERACTIONS:\n  CG11883--CG12470\n  CG11883--CG12470\n  CG11883--CG15735\n  CG11883--CG4328\n  CG11883--crn\n  CG11883--gammaSnap1\n  CG11883--tup\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10834, CG10927, CG11249, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10834--robl62A\n  CG11249--robl62A\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10834, CG10927, CG11249, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10834--robl62A\n  CG10927--robl62A\n  CG11249--robl62A\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG18259--CG18259\n  CG18259--CG9356\n  CG9356--Mf\n  CG9356--oc\n  CG9356--srpk79D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9356--Rab2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  srpk79D--srpk79D\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG18259--Tom20\n  CG18259--zuc\n  CG9356--Tom20\n  CG9356--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 8 proteins, 17 interactions\n\nNew protein to integrate: CG14232\n\nPredict the interactions for CG14232:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14232--CG9356\n  CG14232--CG9356\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14232--CG9356"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10959, CG12470, CG13151, CG16865, Eb1, GATAe, Gprk1, RpS30, Spt6\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG12470\n  CG10959--CG13151\n  CG10959--Eb1\n  CG10959--GATAe\n  CG10959--Gprk1\n  CG10959--RpS30\n  CG10959--Spt6\n  Eb1--Eb1\n  Eb1--Eb1\n\nPCA INTERACTIONS:\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10959--CG16865\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: Ets65A\n\nPredict the interactions for Ets65A:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10959--Ets65A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15098, CG17186, CG3880, N, eyg, fng, fzy, toe\n\nTWO-HYBRID INTERACTIONS:\n  CG17186--toe\n  CG3880--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--eyg\n  N--eyg\n  N--eyg\n  N--fng\n  N--fng\n  N--fng\n  N--fng\n  N--toe\n  eyg--fng\n  eyg--toe\n  fng--toe\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  N--fng\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15098--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  fzy--toe\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 8 proteins, 136 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10674, CG1544, Rab9, RpL12, Yp1, aop\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG1544--RpL12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1544--Rab9\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  aop--aop\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, Rab9, RpL12, Yp1, aop\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG1544--RpL12\n  CG1544--Yp1\n  CG1544--aop\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1544--Rab9\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  aop--aop\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG14569--CG4622\n  CG4622--CG7967\n  CG4622--Ibf2\n  CG4622--Ire1\n  CG4622--p53\n  CG7967--Nnf1a\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG14569--CG4622\n  CG14655--CG4622\n  CG4622--CG7967\n  CG4622--Ibf2\n  CG4622--Ire1\n  CG4622--Nnf1a\n  CG4622--p53\n  CG7967--Nnf1a\n  Ibf2--Ibf2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO1, Mlp84B, Ssl1, ct\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Ssl1\n  Mlp84B--Ssl1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ssl1--ct\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: mus304\n\nPredict the interactions for mus304:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Ssl1--mus304"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Octbeta1R, Octbeta2R, dm\n\nTWO-HYBRID INTERACTIONS:\n  Octbeta2R--dm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Octbeta1R--Octbeta2R\n  Octbeta1R--Octbeta2R\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: rad\n\nPredict the interactions for rad:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Octbeta2R--rad"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n  CG9754--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-alpha--Liprin-gamma\n  Liprin-alpha--trio\n  Liprin-beta--Liprin-gamma\n  Liprin-beta--trio\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-beta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-alpha--Liprin-alpha\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-gamma\n  Liprin-beta--Liprin-beta\n  Liprin-gamma--Liprin-gamma\n\nNETWORK SUMMARY: 6 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Npc1b, CG7386\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG7386--Npc1b\n  Npc1b--RpS25\n  Npc1b--bowl\n  Npc1b--eIF-5A\n  Npc1b--odd\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1\n- Network density: approximately 0.53\n- Hub proteins (highly connected): SH3PX1, CG16717\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1\n\nTWO-HYBRID INTERACTIONS:\n  CG11652--CG16717\n  CG13097--CG16717\n  CG13458--CG16717\n  CG13458--SH3PX1\n  CG16717--SH3PX1\n  CG16717--Trf4-1\n  SH3PX1--SH3PX1\n  SH3PX1--SH3PX1\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54\n- Network density: approximately 1.96\n- Hub proteins (highly connected): TRIM25, CUL3\n- Total interactions: approximately 55"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54\n\nTWO-HYBRID INTERACTIONS:\n  CDH1--CDH1\n  EED--ITGAE\n  ITGAE--TRIM54\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--CDH1\n  CDH1--ITGAE\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDH1--CDH1\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  EED--EED\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CDH1--CDH1\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--ITGAE\n  CUL3--RNF123\n  CUL3--TRIM25\n  EED--EED\n  ITGAE--METTL14\n  ITGAE--RNF123\n  METTL14--METTL14\n  METTL14--METTL14\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TRIM25--TRIM25\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CDH1--CDH1\n  CDH1--TRIM25\n  CDH1--TRIM25\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ITGAE--TRIM25\n  TRIM25--TRIM25\n\nCO-FRACTIONATION INTERACTIONS:\n  CUL3--TRIM25\n\nNETWORK SUMMARY: 8 proteins, 55 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12860, NimC1, park, sick\n- Network density: approximately 0.83\n- Hub proteins (highly connected): park, CG12860\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12860, NimC1, park, sick\n\nTWO-HYBRID INTERACTIONS:\n  CG12860--NimC1\n  CG12860--park\n  CG12860--sick\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  park--park\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  park--park\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2316, DIP1, Tom20, drm, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG2316--drm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG2316--DIP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--zuc\n  Tom20--zuc\n  Tom20--zuc\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2316, DIP1, Tom20, drm, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG2316--drm\n  DIP1--DIP1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG2316--DIP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--Tom20\n  CG2316--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG10721--CG4045\n  CG10721--CG4293\n  CG10721--Pgd\n  CG10721--l(2)efl\n\nNETWORK SUMMARY: 8 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, CG4045, CG4293, Pgd, RpS20, l(2)efl, mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG10721--CG4045\n  CG10721--CG4293\n  CG10721--Pgd\n  CG10721--RpS20\n  CG10721--l(2)efl\n  CG10721--mtDNA-helicase\n  l(2)efl--l(2)efl\n  l(2)efl--l(2)efl\n\nNETWORK SUMMARY: 8 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11560, CG7967, RpS7, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG11560--CG11560\n  CG11560--CG7967\n  CG11560--RpS7\n  CG11560--krz\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: CG4229\n\nPredict the interactions for CG4229:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11560--CG4229"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11534, CG12985, CG8134, Rab5\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--CG8134\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8134--Rab5\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG12985, CG8134, Rab5\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG8134\n  CG12985--CG12985\n  CG12985--CG8134\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8134--Rab5\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer\n\nTWO-HYBRID INTERACTIONS:\n  CG12379--CG2091\n  CG2091--Ef1gamma\n  CG2091--Hs3st-B\n  CG2091--Msp300\n  CG2091--Rgl\n  CG2091--RpII18\n  CG2091--RpS3A\n  CG2091--homer\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10570, CG1461, CG9578, Cpr73D, Vmat\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG9578\n  CG10570--Cpr73D\n  CG10570--Vmat\n  CG1461--CG1461\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG1461, CG9578, Cpr73D, Vmat\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG10570--CG9578\n  CG10570--Cpr73D\n  CG10570--Vmat\n  CG1461--CG1461\n  CG9578--CG9578\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Axud1, CG8907, Prpk, S6k\n- Network density: approximately 0.50\n- Hub proteins (highly connected): Prpk, Axud1\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG8907, Prpk, S6k\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--Prpk\n  CG8907--Prpk\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prpk--S6k\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP\n\nTWO-HYBRID INTERACTIONS:\n  CkIIbeta--CkIIbeta\n  Mfap1--Prp38\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Mfap1\n  Cdc5--Prp38\n  CkIIbeta--Prp38\n  Mfap1--Prp38\n  Mfap1--alphaCOP\n  Mfap1--betaCOP\n  Prp38--Prp8\n  Prp38--alphaCOP\n  Prp38--betaCOP\n  alphaCOP--betaCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  Mfap1--Prp38\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CkIIalpha--CkIIalpha\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdc5, CkIIalpha, CkIIbeta, Mfap1, Prp38, Prp8, alphaCOP, betaCOP\n\nTWO-HYBRID INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIbeta--CkIIbeta\n  Mfap1--Prp38\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdc5--Mfap1\n  Cdc5--Prp38\n  CkIIalpha--CkIIbeta\n  CkIIalpha--Mfap1\n  CkIIalpha--Prp38\n  CkIIbeta--Mfap1\n  CkIIbeta--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp38\n  Mfap1--Prp8\n  Mfap1--alphaCOP\n  Mfap1--betaCOP\n  Prp38--Prp8\n  Prp38--alphaCOP\n  Prp38--betaCOP\n  alphaCOP--betaCOP\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CkIIalpha--CkIIbeta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  CkIIalpha--CkIIbeta\n  Mfap1--Prp38\n  Mfap1--Prp38\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CkIIalpha--CkIIalpha\n\nNETWORK SUMMARY: 8 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1138, Snx1, l(2)37Cg, nudE, scramb2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1138, Snx1, l(2)37Cg, nudE, scramb2\n\nTWO-HYBRID INTERACTIONS:\n  CG1138--Snx1\n  CG1138--l(2)37Cg\n  CG1138--nudE\n  CG1138--scramb2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1116, CG18417, CG7985, ph-p\n\nTWO-HYBRID INTERACTIONS:\n  CG18417--CG7985\n  ph-p--ph-p\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ph-p--ph-p\n\nCO-FRACTIONATION INTERACTIONS:\n  ph-p--ph-p\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1116, CG18417, CG7985, ph-p\n\nTWO-HYBRID INTERACTIONS:\n  CG1116--CG18417\n  CG18417--CG7985\n  CG18417--ph-p\n  ph-p--ph-p\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ph-p--ph-p\n\nCO-FRACTIONATION INTERACTIONS:\n  ph-p--ph-p\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO1, CG10559, CG6707, cold, stops"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10559, CG6707, cold, stops\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--cold\n  CG6707--cold\n  cold--stops\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--cold\n  AGO1--cold\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10211, CG11786, Vsx2, bcd, ci"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10211, CG11786, Vsx2, bcd, ci\n\nTWO-HYBRID INTERACTIONS:\n  CG10211--CG11786\n  CG10211--Vsx2\n  CG10211--bcd\n  CG10211--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14151, CG14317, CG2247, Rca1, TFAM, alph\n\nTWO-HYBRID INTERACTIONS:\n  CG14151--CG14317\n  CG14151--CG2247\n  CG14151--Rca1\n  CG14151--alph\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14151, CG14317, CG2247, Rca1, TFAM, alph\n\nTWO-HYBRID INTERACTIONS:\n  CG14151--CG14317\n  CG14151--CG2247\n  CG14151--Rca1\n  CG14151--TFAM\n  CG14151--alph\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6766, Fer1HCH, Hrd3, Hsl, apt\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG6766, apt\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6766, Fer1HCH, Hrd3, Hsl, apt\n\nTWO-HYBRID INTERACTIONS:\n  CG6766--Hsl\n  CG6766--apt\n  apt--apt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Fer1HCH\n  CG6766--Hrd3\n  Fer1HCH--Hrd3\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG2082, sa\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag1\n  CG2082--Lcp65Ag2\n  CG2082--Lcp65Ag3\n  CG2082--sa\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG13005\n  CG13005--CG13526\n  CG13005--CG14868\n  CG13005--CG14931\n  CG13005--CG33017\n  CG13005--CG7911\n  CG13005--CG8173\n  CG13005--Rcc1\n  CG13005--scu\n  CG33017--scu\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--kin17\n  CG13625--kin17\n  CG17162--kin17\n  CG2017--kin17\n  CG31807--CG31807\n  CG31807--kin17\n  Hsp60B--kin17\n  Traf-like--kin17\n  kin17--l(1)sc\n  kin17--lms\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace\n\nTWO-HYBRID INTERACTIONS:\n  CTPsyn--CTPsyn\n  Trs33--Vha13\n  Vha13--Vha26\n  Vha13--fu\n  Vha13--lace\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mitf--Vha26\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG45057, CTPsyn, Mitf, Trs33, Vha13, Vha26, fu, lace\n\nTWO-HYBRID INTERACTIONS:\n  CG45057--Vha13\n  CTPsyn--CTPsyn\n  Trs33--Vha13\n  Vha13--Vha26\n  Vha13--Vha26\n  Vha13--fu\n  Vha13--fu\n  Vha13--lace\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mitf--Vha13\n  Mitf--Vha26\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CTPsyn--CTPsyn\n  CTPsyn--Vha13\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10590, CG11753, CG17162, CG40127, CG9090, RpS14a, RpS14b, RpS8\n\nTWO-HYBRID INTERACTIONS:\n  CG10590--CG11753\n  CG11753--CG17162\n  CG11753--CG40127\n  CG11753--CG9090\n  CG11753--RpS14a\n  CG11753--RpS14b\n  CG11753--RpS8\n\nCO-FRACTIONATION INTERACTIONS:\n  RpS14a--RpS14b\n  RpS14a--RpS8\n  RpS14b--RpS8\n\nNETWORK SUMMARY: 8 proteins, 10 interactions\n\nNew protein to integrate: Tim17b2\n\nPredict the interactions for Tim17b2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11753--Tim17b2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15042, Gp150, Nup98-96, spo, spok\n\nTWO-HYBRID INTERACTIONS:\n  CG15042--spo\n  Gp150--spo\n  Nup98-96--spo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  spo--spok\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: CG11762\n\nPredict the interactions for CG11762:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG11762--spo"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1\n\nTWO-HYBRID INTERACTIONS:\n  AP2M1--LY9\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LY9--PTPN11\n  LY9--SH2D1A\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AP2M1--AP2M1\n  DDX19B--LY9\n  EDEM3--LY9\n  GUSB--LY9\n  HLA-F--LY9\n  IDUA--LY9\n  PTPN11--PTPN11\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX19B--DDX19B\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG17328, CG30324, CG32846, CycK, D, Hr78, RpL3, cg, hale\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG17328\n  CG11534--CG32846\n  CG17328--CG30324\n  CG17328--CG32846\n  CG17328--CycK\n  CG17328--D\n  CG17328--Hr78\n  CG17328--RpL3\n  CG17328--cg\n  CG17328--hale\n  CG30324--hale\n  CG32846--D\n  CG32846--hale\n  CycK--D\n  CycK--hale\n  D--D\n  D--D\n  RpL3--hale\n  hale--hale\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10157, CG31038, CG9902, EndoGI, lig3\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG10157, lig3\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG31038, CG9902, EndoGI, lig3\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--CG31038\n  CG10157--CG9902\n  CG10157--EndoGI\n  CG10157--lig3\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13138, CG14053, CG32221, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG13138--CG13138\n  CG13138--skpF\n  CG14053--CG9316\n  CG14053--skpF\n  CG4221--skpF\n  CG9316--skpF\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--skpF\n  Rca1--skpF\n  ntc--skpF\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG32221--skpF\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 9 proteins, 21 interactions\n\nNew protein to integrate: CG33017\n\nPredict the interactions for CG33017:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14053--CG33017\n  CG33017--skpF"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cyp28d1, EDTP, RpL17, RpS23, RpS9\n- Network density: approximately 0.70\n- Hub proteins (highly connected): EDTP, RpL17\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp28d1, EDTP, RpL17, RpS23, RpS9\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n  EDTP--RpL17\n  EDTP--RpS23\n  EDTP--RpS9\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL17--RpS23\n  RpL17--RpS9\n  RpS23--RpS9\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG10621--CG13245\n  CG10621--CG2931\n  CG10621--Cpr100A\n  CG10621--Efa6\n  CG10621--Lin29\n  CG10621--TfIIEbeta\n  CG10621--rau\n  Cpr100A--Cpr100A\n  Efa6--Efa6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n  CG9754--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-alpha--trio\n  Liprin-beta--Liprin-gamma\n  Liprin-beta--trio\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Liprin-alpha--Liprin-beta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-alpha--Liprin-alpha\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-gamma\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9754, Liprin-alpha, Liprin-beta, Liprin-gamma, trio\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--Liprin-beta\n  CG9754--Liprin-beta\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Liprin-alpha--Liprin-gamma\n  Liprin-alpha--trio\n  Liprin-beta--Liprin-gamma\n  Liprin-beta--trio\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-beta\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-alpha--Liprin-alpha\n  Liprin-alpha--Liprin-beta\n  Liprin-alpha--Liprin-gamma\n  Liprin-beta--Liprin-beta\n  Liprin-gamma--Liprin-gamma\n\nNETWORK SUMMARY: 6 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Axud1, CG8907, Prpk, S6k\n\nTWO-HYBRID INTERACTIONS:\n  CG8907--Prpk\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prpk--S6k\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG8907, Prpk, S6k\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--Prpk\n  CG8907--Prpk\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prpk--S6k\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10396, CG11134, CG30089, janA, mus101, yki"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG11134, CG30089, janA, mus101, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--yki\n  CG30089--janA\n  CG30089--mus101\n  CG30089--yki\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10616, CG14232, CG16781, CG4955, CG5906\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG4955, CG10616\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG14232, CG16781, CG4955, CG5906\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG4955\n  CG14232--CG4955\n  CG16781--CG4955\n  CG4955--CG5906\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG13043\n  CG11350--sxc\n  CG13043--CG4896\n  CG13043--CG6353\n  CG13043--CG6380\n  CG13043--Sld5\n  CG13043--fd59A\n  CG13043--spi\n  CG13043--sxc\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl\n\nTWO-HYBRID INTERACTIONS:\n  CG5110--CG5189\n  CG5110--CG5189\n  CG5110--Dpy-30L2\n  CG5110--corto\n  corto--corto\n  rl--rl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5110--Dsor1\n  CG5110--rl\n  CG5110--rl\n  Dsor1--rl\n  corto--rl\n  corto--rl\n\nCO-LOCALIZATION INTERACTIONS:\n  Dsor1--rl\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl\n\nTWO-HYBRID INTERACTIONS:\n  CG5110--CG5189\n  CG5110--CG5189\n  CG5110--Dpy-30L2\n  CG5110--Rm62\n  CG5110--corto\n  Rm62--Rm62\n  corto--corto\n  rl--rl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dsor1--rl\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dsor1--rl\n  Dsor1--rl\n  Dsor1--rl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5110--Dsor1\n  CG5110--corto\n  CG5110--rl\n  CG5110--rl\n  Dsor1--rl\n  Rm62--Rm62\n  corto--corto\n  corto--rl\n  corto--rl\n\nCO-LOCALIZATION INTERACTIONS:\n  Dsor1--rl\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 7 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG2993, CG31712, CG3542, GstO3, KLHL18, Sh3beta, awd, l(2)37Cb, regucalcin\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--l(2)37Cb\n  awd--awd\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG2993--l(2)37Cb\n  CG31712--CG3542\n  CG31712--GstO3\n  CG31712--l(2)37Cb\n  CG31712--regucalcin\n  CG3542--l(2)37Cb\n  GstO3--Sh3beta\n  GstO3--awd\n  GstO3--l(2)37Cb\n  GstO3--regucalcin\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n  Sh3beta--awd\n  Sh3beta--l(2)37Cb\n  Sh3beta--regucalcin\n  awd--l(2)37Cb\n  awd--regucalcin\n  l(2)37Cb--regucalcin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n  KLHL18--l(2)37Cb\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  KLHL18--l(2)37Cb\n\nCO-FRACTIONATION INTERACTIONS:\n  awd--awd\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  awd--awd\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arf51F, CG5011, RanBP3, rdx"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arf51F, CG5011, RanBP3, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Arf51F--RanBP3\n  CG5011--RanBP3\n  RanBP3--rdx\n  RanBP3--rdx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1104, CG13445, CG13461, CG15459, CG30291, CG34191, GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG30291\n\nNETWORK SUMMARY: 7 proteins, 1 interactions\n\nNew protein to integrate: CG5862\n\nPredict the interactions for CG5862:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1104--CG5862\n  CG1104--CG5862\n  CG13445--CG5862\n  CG13461--CG5862\n  CG15459--CG5862\n  CG34191--CG5862\n  CG5862--GEFmeso\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1104--CG5862\n  CG30291--CG5862"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: APOA1, APP, CALM, CALM1, GBF1, PDE1A, Rab18, calA\n\nTWO-HYBRID INTERACTIONS:\n  APOA1--PDE1A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  APOA1--APOA1\n\nCO-FRACTIONATION INTERACTIONS:\n  CALM1--PDE1A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CALM--PDE1A\n  PDE1A--calA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APOA1--APOA1\n  APOA1--APOA1\n  APOA1--APP\n  APOA1--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--PDE1A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOA1--APOA1\n  APP--APP\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  GBF1--PDE1A\n  GBF1--Rab18\n  PDE1A--Rab18\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOA1--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 8 proteins, 21 interactions\n\nNew protein to integrate: PDE1C\n\nPredict the interactions for PDE1C:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  PDE1A--PDE1C\n  PDE1A--PDE1C"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8\n\nTWO-HYBRID INTERACTIONS:\n  CG13014--CG8248\n  CG14905--CG8248\n  CG3652--CG8248\n  CG5059--CG5059\n  CG5059--CG8248\n  CG8116--CG8248\n  CG8248--Syx6\n  CG8248--Syx8\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8\n\nTWO-HYBRID INTERACTIONS:\n  CG13014--CG8248\n  CG14905--CG8248\n  CG14905--NimC1\n  CG34165--CG8248\n  CG3652--CG8248\n  CG5059--CG5059\n  CG5059--CG8248\n  CG8116--CG8248\n  CG8248--NimC1\n  CG8248--Syx6\n  CG8248--Syx8\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10513, CG11726, CG13168, Cwc25, Prp3\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG10513--CG13168\n  CG10513--Cwc25\n  CG10513--Prp3\n  Prp3--Prp3\n\nNETWORK SUMMARY: 5 proteins, 5 interactions\n\nNew protein to integrate: Rlb1\n\nPredict the interactions for Rlb1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10513--Rlb1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, fra, spheroide\n\nTWO-HYBRID INTERACTIONS:\n  Acp95EF--spheroide\n  Edc3--spheroide\n  PebIII--spheroide\n  fra--spheroide\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14823--spheroide\n  CG9581--Jon65Aiv\n  CG9581--spheroide\n  Fer1HCH--Jon65Aiv\n  Fer1HCH--spheroide\n  Jon65Aiv--spheroide\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Edc3--Edc3\n  fra--fra\n\nNETWORK SUMMARY: 9 proteins, 12 interactions\n\nNew protein to integrate: RN-tre\n\nPredict the interactions for RN-tre:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  RN-tre--spheroide"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG10508, CG16721\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10508, CG14840, CG16721, CG9213, CycE, Pp2B-14D, Prm, RhoGAP92B, Tektin-A, Traf-like\n\nTWO-HYBRID INTERACTIONS:\n  CG10508--CG14840\n  CG10508--CG16721\n  CG10508--CG9213\n  CG10508--CycE\n  CG10508--Pp2B-14D\n  CG10508--Prm\n  CG10508--RhoGAP92B\n  CG10508--Tektin-A\n  CG10508--Traf-like\n  CG16721--Prm\n  Tektin-A--Traf-like\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n\nTWO-HYBRID INTERACTIONS:\n  CG15865--CG8927\n  CG17162--CG8927\n  CG3225--CG8927\n  CG6945--CG8927\n  CG8927--Hey\n  CG8927--Ir60a\n  CG8927--cindr\n  CG8927--cnc\n  CG8927--spz3\n  Hey--cnc\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17029, ImpL3, Vps28"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17029, ImpL3, Vps28\n\nTWO-HYBRID INTERACTIONS:\n  CG17029--ImpL3\n  CG17029--ImpL3\n  CG17029--Vps28\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock\n\nTWO-HYBRID INTERACTIONS:\n  CG15022--CG2258\n  CG15022--Cip4\n  CG15022--Dap160\n  CG15022--Dys\n  CG15022--NimB4\n  CG15022--Ptp52F\n  CG15022--Tsp\n  CG15022--dock\n  Cip4--Cip4\n  dock--dock\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: sav\n\nPredict the interactions for sav:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15022--sav\n\nFRET INTERACTIONS:\n  sav--sav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11407, IntS4, sgg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  IntS4--sgg\n  IntS4--sgg\n\nNETWORK SUMMARY: 3 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, IntS4, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  IntS4--sgg\n  IntS4--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG11486\n  Bap60--CG8907\n  Bap60--eIF4E-3\n  CG11486--eIF4E-3\n  CG11486--eIF4E-3\n  CG13510--eIF4E-3\n  CG8907--eIF4E-3\n  Thor--eIF4E-3\n  TwdlE--eIF4E-3\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--mxt\n  eIF4E-3--mxt\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--eIF4G2\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11249, CG11380, CG3942, robl62A, sol"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11249, CG11380, CG3942, robl62A, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG11249--CG11380\n  CG11249--CG3942\n  CG11249--robl62A\n  CG11249--sol\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arf51F, CG5011, RanBP3, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Arf51F--RanBP3\n  RanBP3--rdx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arf51F, CG5011, RanBP3, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Arf51F--RanBP3\n  CG5011--RanBP3\n  RanBP3--rdx\n  RanBP3--rdx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Anp, CG11576, CG7910, CSN8, Pp2A-29B\n\nTWO-HYBRID INTERACTIONS:\n  Anp--CG7910\n  CG7910--CSN8\n  CG7910--Pp2A-29B\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Anp, CG11576, CG7910, CSN8, Pp2A-29B\n\nTWO-HYBRID INTERACTIONS:\n  Anp--CG7910\n  CG11576--CG7910\n  CG7910--CSN8\n  CG7910--Pp2A-29B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2641, CG8494, fd64A, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8494--fd64A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2641--CG8494\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: Tom20\n\nPredict the interactions for Tom20:"
-      },
-      {
-        "role": "assistant",
-        "content": "PROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--Tom20\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG45105, Fas2\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, coro, homer, lva, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG17265--CG17265\n  CG17265--CG45105\n  CG43143--CG45105\n  CG45105--Kap-alpha3\n  CG45105--Pp1-87B\n  CG45105--coro\n  CG45105--homer\n  CG45105--mbo\n\nNAN INTERACTIONS:\n  CG45105--lva\n  Fas2--lva\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG43143--Fas2\n  CG43143--Fas2\n  CG45105--Fas2\n  CG45105--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1635, Pbgs, Tim17a2\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--Pbgs\n  Pbgs--Tim17a2\n\nNETWORK SUMMARY: 3 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, Pbgs, Tim17a2\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--Pbgs\n  Pbgs--Pbgs\n  Pbgs--Tim17a2\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1\n- Network density: approximately 0.67\n- Hub proteins (highly connected): FK506-bp1, CG5033\n- Total interactions: approximately 30"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5033, CG5642, CG6712, CG6724, CG8939, FK506-bp1, Non1, Rbm13, RpL7-like, Tsc1\n\nTWO-HYBRID INTERACTIONS:\n  CG5033--CG5642\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5033--CG6712\n  CG5033--CG6724\n  CG5033--CG8939\n  CG5033--FK506-bp1\n  CG5033--Non1\n  CG5033--Rbm13\n  CG5033--RpL7-like\n  CG5033--Tsc1\n  CG6712--CG8939\n  CG6712--Non1\n  CG6712--Rbm13\n  CG6712--RpL7-like\n  CG6724--FK506-bp1\n  CG6724--Rbm13\n  CG8939--FK506-bp1\n  CG8939--Non1\n  CG8939--Rbm13\n  CG8939--RpL7-like\n  CG8939--Tsc1\n  FK506-bp1--FK506-bp1\n  FK506-bp1--Non1\n  Non1--Rbm13\n  Non1--RpL7-like\n  Rbm13--RpL7-like\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG43896, Usp7\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd, sty\n\nTWO-HYBRID INTERACTIONS:\n  CG10154--CG43896\n  CG10154--gce\n  CG17107--CG43896\n  CG43896--CG6707\n  CG43896--Usp7\n  CG43896--cact\n  CG43896--gce\n  CG43896--odd\n  CG43896--sty\n  cact--cact\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  cact--cact\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Usp7--Usp7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Usp7--Usp7\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10616, CG14232, CG16781, CG4955, CG5906\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG4955\n  CG14232--CG4955\n  CG4955--CG5906\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG14232, CG16781, CG4955, CG5906\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG4955\n  CG14232--CG4955\n  CG16781--CG4955\n  CG4955--CG5906\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n\nTWO-HYBRID INTERACTIONS:\n  CG12182--Cpr67Fa2\n  CG13843--CG13843\n  CG13843--Cpr67Fa2\n  CG18563--Cpr67Fa2\n  CG4328--Cpr67Fa2\n  CG8907--Cpr67Fa2\n  Cpr67Fa2--D\n  D--D\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n\nTWO-HYBRID INTERACTIONS:\n  C15--Cpr67Fa2\n  CG12182--Cpr67Fa2\n  CG13843--CG13843\n  CG13843--Cpr67Fa2\n  CG18563--Cpr67Fa2\n  CG4328--Cpr67Fa2\n  CG6688--Cpr67Fa2\n  CG8907--Cpr67Fa2\n  Cpr67Fa2--D\n  Cpr67Fa2--prt\n  D--D\n  D--D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n\nTWO-HYBRID INTERACTIONS:\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks30A--cdc2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB3--cdc2\n  Skp2--cdc2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycB\n  Cks30A--CycB3\n  Cks30A--cdc2\n  Cks85A--CycA\n  Cks85A--CycB\n  Cks85A--rux\n  CycA--cdc2\n  CycA--rux\n  CycB--CycB3\n  CycB--cdc2\n  CycB--rux\n  CycB3--rux\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--cort\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--CycB\n  CycA--CycB\n  CycA--rux\n  CycA--rux\n  CycA--rux\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks30A--cdc2\n  Cks30A--cdc2\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n\nNETWORK SUMMARY: 10 proteins, 46 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n\nTWO-HYBRID INTERACTIONS:\n  Cks30A--L\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks30A--Skp2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cort\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB3--cdc2\n  CycB3--cdc2\n  Skp2--cdc2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--CycB\n  Cks30A--CycB3\n  Cks30A--cdc2\n  Cks30A--rux\n  Cks85A--CycA\n  Cks85A--CycB\n  Cks85A--CycB3\n  Cks85A--cdc2\n  Cks85A--rux\n  CycA--CycB\n  CycA--CycB3\n  CycA--cdc2\n  CycA--rux\n  CycB--CycB3\n  CycB--cdc2\n  CycB--rux\n  CycB3--cdc2\n  CycB3--rux\n  cdc2--rux\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CycA--cort\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--cort\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--CycB\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycB--cdc2\n  CycB--rux\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks30A--cdc2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n\nNETWORK SUMMARY: 10 proteins, 78 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG6733\n  CG12521--CG6733\n  CG31731--CG6733\n  CG6733--Hip1\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG12521, CG17652, CG31731, CG6733, Hip1\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG6733\n  CG12521--CG6733\n  CG17652--CG6733\n  CG31731--CG6733\n  CG6733--Hip1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10959, CG13151, CG2129, CG2199\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG13151\n  CG13151--CG2129\n  CG13151--CG2199\n  CG2129--CG2129\n  CG2129--CG2129\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13151--CG2129\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: CG15916\n\nPredict the interactions for CG15916:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13151--CG15916"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATPCL, CG10137, sgg\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n\nNETWORK SUMMARY: 3 proteins, 1 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, sgg\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10137--sgg\n  CG10137--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C\n\nTWO-HYBRID INTERACTIONS:\n  CG11456--CG13005\n  CG11456--CG6276\n  CG11456--CG6654\n  CG11456--Hr78\n  CG11456--Jon65Aiv\n  CG11456--TpnC41C\n  CG4854--CG4854\n  CG4854--Sox21b\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C\n\nTWO-HYBRID INTERACTIONS:\n  CG11456--CG13005\n  CG11456--CG4854\n  CG11456--CG6276\n  CG11456--CG6654\n  CG11456--Hr78\n  CG11456--Jon65Aiv\n  CG11456--Sox21b\n  CG11456--TpnC41C\n  CG4854--CG4854\n  CG4854--Sox21b\n  Hr78--Sox21b\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11412, CG4065, CG5009, rols\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG4065--CG5009\n  CG4065--rols\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5009, rols\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG4065--CG5009\n  CG4065--rols\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12994, CG16853, ZnT41F, mew\n- Network density: approximately 0.67\n- Hub proteins (highly connected): ZnT41F, CG12994\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12994, CG16853, ZnT41F, mew\n\nTWO-HYBRID INTERACTIONS:\n  CG12994--CG16853\n  CG12994--ZnT41F\n  CG12994--mew\n  ZnT41F--ZnT41F\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG10841\n  CG10465--CG15547\n  CG10465--CG9578\n  CG10465--Dref\n  CG10465--Snr1\n  CG9578--CG9578\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10465--Leash\n  Dref--Dref\n\nNETWORK SUMMARY: 8 proteins, 14 interactions\n\nNew protein to integrate: Mob4\n\nPredict the interactions for Mob4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10465--Mob4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arp5, CG13022, hh, ptc, rasp, rho, spi\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--rasp\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  ptc--rasp\n  rasp--rho\n  rho--spi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--ptc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  hh--ptc\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hh--rasp\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n\nNETWORK SUMMARY: 7 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG13022, hh, ptc, rasp, rho, spi\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--rasp\n  CG13022--rasp\n  ptc--ptc\n  ptc--ptc\n  rho--rho\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--rasp\n  rasp--rho\n  rho--spi\n  rho--spi\n  rho--spi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--ptc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hh--rasp\n  rasp--spi\n  rasp--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n\nNETWORK SUMMARY: 7 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG14315--CG6683\n  CG6683--CG6683\n  CG6683--Fer1HCH\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG8026\n  CG10949--CG8026\n  CG10949--CG8560\n  CG6683--CG8026\n  CG6683--CG8560\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG10949--Fer1HCH\n  CG14315--CG6683\n  CG6683--CG6683\n  CG6683--Fer1HCH\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG6683\n  CG10585--CG8026\n  CG10949--CG6683\n  CG10949--CG8026\n  CG10949--CG8560\n  CG6683--CG8026\n  CG6683--CG8560\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: RpS26, dimm, eIF-2gamma, nos, osk, vls"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: RpS26, dimm, eIF-2gamma, nos, osk, vls\n\nTWO-HYBRID INTERACTIONS:\n  RpS26--vls\n  dimm--vls\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nos--osk\n  nos--osk\n  nos--vls\n  nos--vls\n  osk--vls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dimm--dimm\n  eIF-2gamma--vls\n  osk--vls\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  nos--osk\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10366, CG10494, CG6693, VhaAC39-1\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10366, CG10494\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10366, CG10494, CG6693, VhaAC39-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10366--CG10494\n  CG10366--VhaAC39-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10366--CG6693\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, skpC\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--eIF2B-delta\n  ci--ci\n  ci--eIF2B-delta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-delta--skpC\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Trf2--eIF2B-delta\n\nNETWORK SUMMARY: 6 proteins, 9 interactions\n\nNew protein to integrate: ird5\n\nPredict the interactions for ird5:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  eIF2B-delta--ird5\n  ird5--ird5"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7879, CG8407, Cpr73D, ko"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7879, CG8407, Cpr73D, ko\n\nTWO-HYBRID INTERACTIONS:\n  CG7879--CG8407\n  CG8407--Cpr73D\n  CG8407--ko\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG5149, His2A:CG31618\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG5149\n  CG11474--CG5149\n  CG15365--CG5149\n  CG15631--CG5149\n  CG5149--CG6287\n  CG5149--CG8449\n  CG5149--CG8635\n  CG5149--His2A:CG31618\n  CG5149--eIF-5A\n\nPCA INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG12659, CG33017, CSN4, Rap2l, pho, rasp, spz\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--CG33017\n  Arp5--CSN4\n  Arp5--Rap2l\n  Arp5--rasp\n  Arp5--spz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp5--CG12659\n  Arp5--CG12659\n  Arp5--pho\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  spz--spz\n\nCO-FRACTIONATION INTERACTIONS:\n  spz--spz\n  spz--spz\n  spz--spz\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  spz--spz\n\nCO-LOCALIZATION INTERACTIONS:\n  spz--spz\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  spz--spz\n  spz--spz\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10576, CG2862, CG30339, CG9083, Es2, dUTPase, so\n\nTWO-HYBRID INTERACTIONS:\n  CG10576--CG9083\n  CG10576--Es2\n  CG10576--so\n  CG9083--so\n  dUTPase--dUTPase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10576--CG2862\n  CG10576--CG30339\n  CG10576--dUTPase\n\nCO-FRACTIONATION INTERACTIONS:\n  dUTPase--dUTPase\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dUTPase--dUTPase\n\nNETWORK SUMMARY: 7 proteins, 10 interactions\n\nNew protein to integrate: CTPsyn\n\nPredict the interactions for CTPsyn:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CTPsyn--CTPsyn\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10576--CTPsyn\n  CTPsyn--CTPsyn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7967, CG8010, Sas-4\n- Network density: approximately 1.33\n- Hub proteins (highly connected): CG8010, Sas-4\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7967, CG8010, Sas-4\n\nTWO-HYBRID INTERACTIONS:\n  CG7967--CG8010\n  CG8010--CG8010\n  CG8010--Sas-4\n  Sas-4--Sas-4\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n- Network density: approximately 0.33\n- Hub proteins (highly connected): Ire1, Xbp1\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n\nTWO-HYBRID INTERACTIONS:\n  CG13541--Ire1\n  CG4622--Ire1\n  Ire1--Vha36-3\n  Ire1--ZnT41F\n  Ire1--nemy\n  ZnT41F--ZnT41F\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Ire1--Xbp1\n  Ire1--ninaE\n  Xbp1--ninaE\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n  Ire1--Xbp1\n  Ire1--bsk\n  Xbp1--bsk\n  bsk--ninaE\n\nFRET INTERACTIONS:\n  Xbp1--Xbp1\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Lcp2, Rcd7, jbug, rb\n- Network density: approximately 0.50\n- Hub proteins (highly connected): Rcd7, rb\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Lcp2, Rcd7, jbug, rb\n\nTWO-HYBRID INTERACTIONS:\n  Lcp2--Rcd7\n  Rcd7--jbug\n  Rcd7--rb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--CG6310\n  CG15168--CG6310\n  CG6310--RpS26\n  CG6310--Tim17b2\n  CG6310--fax\n  CG6310--ninaD\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--CG6310\n  CG15168--CG6310\n  CG1746--CG6310\n  CG30472--CG6310\n  CG6310--Eaat1\n  CG6310--RpS26\n  CG6310--Tim17b2\n  CG6310--fax\n  CG6310--ninaD\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG18004--CG3342\n  CG18004--Rad51D\n  CG18004--sinah\n  CG18004--vari\n  CG3342--CG3342\n  CG3342--CG3342\n  REG--REG\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18004--Hsp22\n  CG18004--Hsp23\n  CG18004--Hsp27\n  CG18004--Mocs1\n  CG18004--REG\n  Hsp22--Hsp23\n  Hsp22--Hsp27\n  Hsp23--Hsp27\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Galt, Gale\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl\n\nTWO-HYBRID INTERACTIONS:\n  CG31550--Galt\n  Chro--Galt\n  Gale--Gale\n  Galt--Sec24AB\n  Galt--TTLL3B\n  Galt--bsh\n  UGP--UGP\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galt--sgl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gale--Galt\n  Gale--Galt\n  Galt--UGP\n  Galt--UGP\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: BEAF-32, Eb1, GEFmeso, Kebab, Tab2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BEAF-32, Eb1, GEFmeso, Kebab, Tab2\n\nTWO-HYBRID INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--Kebab\n  Eb1--Eb1\n  Eb1--Eb1\n  GEFmeso--Kebab\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kebab--Tab2\n  Tab2--Tab2\n\nPCA INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Kebab\n\nCO-FRACTIONATION INTERACTIONS:\n  BEAF-32--BEAF-32\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BEAF-32--BEAF-32\n\nNETWORK SUMMARY: 5 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6\n- Network density: approximately 0.80\n- Hub proteins (highly connected): CG33052, CtBP\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6\n\nTWO-HYBRID INTERACTIONS:\n  CG33052--CtBP\n  CG33052--Ercc1\n  CG33052--Rcd-1r\n  CtBP--CtBP\n  Sas-6--Sas-6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33052--Rab6\n  CG33052--Sas-6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33052--Sas-6\n  CG33052--Sas-6\n  CtBP--CtBP\n  CtBP--CtBP\n\nCO-FRACTIONATION INTERACTIONS:\n  Sas-6--Sas-6\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14957, Hakai, Nha1, upSET\n\nTWO-HYBRID INTERACTIONS:\n  CG14957--Hakai\n  CG14957--upSET\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14957, Hakai, Nha1, upSET\n\nTWO-HYBRID INTERACTIONS:\n  CG14957--Hakai\n  CG14957--Nha1\n  CG14957--upSET\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7208, CG7967, Dlc90F, alphaKap4, lush\n- Network density: approximately 0.60\n- Hub proteins (highly connected): Dlc90F, CG7208\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7208, CG7967, Dlc90F, alphaKap4, lush\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--CG7967\n  CG7208--Dlc90F\n  CG7208--alphaKap4\n  CG7208--lush\n  Dlc90F--Dlc90F\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1142, CG3303, Ent1, Tsp74F, Tsp96F\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG3303, Tsp74F\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG3303, Ent1, Tsp74F, Tsp96F\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG3303\n  CG3303--Ent1\n  CG3303--Tsp74F\n  CG3303--Tsp96F\n  Ent1--Tsp74F\n  Tsp74F--Tsp96F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10396, CG30089, ZnT41F, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG30089, ZnT41F, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG10396--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10396--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG9825, Stat92E, dome, et, hop, os, tub\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  dome--hop\n  dome--os\n  et--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--et\n  Stat92E--et\n  Stat92E--hop\n  dome--dome\n  dome--dome\n  dome--et\n  dome--hop\n  dome--hop\n  et--et\n\nTWO-HYBRID INTERACTIONS:\n  CG9825--et\n\nNETWORK SUMMARY: 7 proteins, 21 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9825, Stat92E, dome, et, hop, os, tub\n\nTWO-HYBRID INTERACTIONS:\n  CG9825--et\n  et--tub\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--hop\n  dome--hop\n  dome--os\n  et--os\n  hop--os\n  hop--os\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--hop\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  Stat92E--os\n  dome--hop\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  dome--os\n  et--hop\n  hop--os\n  hop--os\n  hop--os\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--dome\n  Stat92E--et\n  Stat92E--et\n  Stat92E--hop\n  dome--dome\n  dome--dome\n  dome--et\n  dome--et\n  dome--et\n  dome--hop\n  dome--hop\n  dome--os\n  dome--os\n  et--et\n  et--hop\n  et--hop\n\nPCA INTERACTIONS:\n  dome--dome\n  dome--dome\n  dome--dome\n\nNETWORK SUMMARY: 7 proteins, 57 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip\n- Network density: approximately 0.60\n- Hub proteins (highly connected): Mib1, Fibp\n- Total interactions: approximately 27"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, GstD4, Mib1, OTUD4, Tm1, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG7196--Fibp\n  Fibp--GstD4\n  Tm1--Tm1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdk5--Mib1\n  Cdk5--Mib1\n  Csnk2b--Mib1\n  Fibp--Mib1\n  Fibp--Tm1\n  Fibp--zip\n  Mib1--Mib1\n  Tm1--zip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Cdk5--Mib1\n  Fibp--OTUD4\n  Mib1--Mib1\n  Mib1--OTUD4\n  Tm1--Tm1\n\nCO-LOCALIZATION INTERACTIONS:\n  Cdk5--Mib1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Mib1--Mib1\n  Mib1--Mib1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  Cdk5--Fibp\n  Csnk2b--Fibp\n  Fibp--Gsk3b\n  Tm1--Tm1\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  OTUD4--OTUD4\n\nNETWORK SUMMARY: 10 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11266, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG7879\n  CG30122--CG30122\n  CG30122--CG7879\n  CG7879--CG8407\n  CG7879--CG9426\n  CG7879--Pli\n  CG7879--Su(H)\n  CG7879--Vps35\n  CG9426--CG9426\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7879--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Pli--Pli\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG12470\n\nPredict the interactions for CG12470:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12470--CG7879"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--CG14931\n  CG13005--CG14931\n  CG14931--CG15631\n  CG14931--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14931--CG9062\n\nNETWORK SUMMARY: 8 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--CG14931\n  CG13005--CG14931\n  CG14931--CG15631\n  CG14931--Cpr50Ca\n  CG14931--Tsp\n  CG14931--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14931--CG9062\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10749, CG13510, CG14210\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG13510\n  CG10749--CG14210\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Fas2\n\nPredict the interactions for Fas2:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10749--Fas2\n  CG10749--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: EDTP, RpL17, RpS23, RpS9\n\nTWO-HYBRID INTERACTIONS:\n  EDTP--RpL17\n  EDTP--RpS23\n  EDTP--RpS9\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL17--RpS23\n  RpL17--RpS9\n  RpS23--RpS9\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: Cyp28d1\n\nPredict the interactions for Cyp28d1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bx, CG4822, CG5541, Kr, caps, trn"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG4822, CG5541, Kr, caps, trn\n\nTWO-HYBRID INTERACTIONS:\n  CG4822--caps\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Kr\n  Bx--caps\n  Bx--caps\n  Bx--trn\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--caps\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5541--caps\n  CG5541--caps\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry\n- Network density: approximately 0.75\n- Hub proteins (highly connected): Trs31, Bet3\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  CG9577--CG9577\n  CG9577--Trs31\n  Met75Ca--Trs31\n  Met75Cb--Trs31\n  Trs20--Trs31\n  Trs20--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11382, CG1598\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG11382, CG1598, CG3225, CG43129, CG7264\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG11382\n  CG11382--CG1598\n  CG11382--CG3225\n  CG11382--CG43129\n  CG11382--CG7264\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w\n- Network density: approximately 0.42\n- Hub proteins (highly connected): Gas41, pont\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14445, CG14818, DMAP1, Dcr-1, Gas41, Snx16, Tip60, armi, pont, w\n\nTWO-HYBRID INTERACTIONS:\n  CG14445--Gas41\n  CG14818--Gas41\n  DMAP1--Gas41\n  Gas41--Snx16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcr-1--w\n  Dcr-1--w\n  Gas41--w\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-1--Gas41\n  Gas41--armi\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-1--Gas41\n  Dcr-1--Gas41\n  Gas41--Tip60\n  Gas41--pont\n  Tip60--pont\n  Tip60--pont\n  armi--armi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DMAP1--pont\n  Gas41--pont\n  Tip60--pont\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG2767\n  Moe--Moe\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Ssdp\n  CG2767--CG5355\n  CG2767--CG6084\n  CG2767--Fkbp14\n  CG2767--Moe\n  CG2767--RhoGDI\n  CG2767--yip2\n  CG5355--Fkbp14\n  CG6084--Fkbp14\n  CG6084--Moe\n  CG6084--RhoGDI\n  Fkbp14--Moe\n  Fkbp14--RhoGDI\n  Fkbp14--yip2\n  Moe--RhoGDI\n  Moe--yip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--CG2767\n  Bx--Ssdp\n  CG2767--Ssdp\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG4563--Hk\n  Hk--Obp56d\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hk--santa-maria\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--eag\n  Hk--eag\n  Hk--qvr\n  eag--qvr\n  eag--qvr\n\nNETWORK SUMMARY: 8 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4563, Hk, Obp56d, eag, para, qvr, santa-maria, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG4563--Hk\n  Hk--Obp56d\n  Hk--spi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hk--santa-maria\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hk--eag\n  Hk--eag\n  Hk--qvr\n  Hk--qvr\n  eag--qvr\n  eag--qvr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hk--para\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5890, SIDL, SKIP, Shal, Tango2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5890, SIDL, SKIP, Shal, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG5890--Shal\n  SIDL--Shal\n  SKIP--Shal\n  Shal--Tango2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Shal\n  SIDL--Shal\n  SKIP--Shal\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10014, CG11327, CG17770, CG32392, Poxm\n\nTWO-HYBRID INTERACTIONS:\n  CG10014--CG11327\n  CG10014--CG17770\n  CG10014--Poxm\n  CG32392--Poxm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10014--CG32392\n  CG10014--CG32392\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10014--CG32392\n\nNETWORK SUMMARY: 5 proteins, 7 interactions\n\nNew protein to integrate: Cam\n\nPredict the interactions for Cam:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10014--Cam\n  CG10014--Cam"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33052, CtBP, Ercc1, Rab6, Rcd-1r, Sas-6\n\nTWO-HYBRID INTERACTIONS:\n  CG33052--CtBP\n  CG33052--Ercc1\n  CG33052--Rcd-1r\n  CtBP--CtBP\n  Sas-6--Sas-6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33052--Rab6\n  CG33052--Sas-6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG33052--Sas-6\n  CG33052--Sas-6\n  CtBP--CtBP\n  CtBP--CtBP\n\nCO-FRACTIONATION INTERACTIONS:\n  Sas-6--Sas-6\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG12012, Syb\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG11857, CG12012, CG4822, CG5447, CG7668, Ndfip, Pi3K68D, R, Syb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG12012--Pi3K68D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CG12012\n  CG12012--CG4822\n  CG12012--CG5447\n  CG12012--CG7668\n  CG12012--Ndfip\n  CG12012--R\n  CG12012--Syb\n  CG5447--CG7668\n  CG5447--Syb\n  CG7668--Syb\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10749, CG13510, CG14210, Fas2\n- Network density: approximately 0.83\n- Hub proteins (highly connected): CG10749, Fas2\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG13510, CG14210, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG13510\n  CG10749--CG14210\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10749--Fas2\n  CG10749--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--sa\n  CG30417--tbrd-1\n  Taf10b--sa\n  ZAP3--sa\n  sa--tbrd-1\n  tbrd-1--tbrd-1\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pp4-19C--sa\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--sa\n  CG30417--sa\n  CG30417--tbrd-1\n  CG30417--tbrd-1\n  Taf10b--sa\n  ZAP3--sa\n  sa--tbrd-1\n  tbrd-1--tbrd-1\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pp4-19C--sa\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n\nTWO-HYBRID INTERACTIONS:\n  4E-T--4E-T\n  4E-T--CG13689\n  CG13689--CG13733\n  CG13689--CG34117\n  CG13689--CG6769\n  CG13689--Dl\n  CG13689--LKR\n  CG13689--ste14\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 4E-T, Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n\nTWO-HYBRID INTERACTIONS:\n  4E-T--4E-T\n  4E-T--CG13689\n  Akh--CG13689\n  CG13689--CG13733\n  CG13689--CG34117\n  CG13689--CG6769\n  CG13689--Dl\n  CG13689--LKR\n  CG13689--Moca-cyp\n  CG13689--ste14\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dl--Dl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--CG17162\n  CG10927--CG3225\n  CG10927--CG33129\n  CG10927--CG6020\n  CG10927--Tollo\n  CG10927--robl62A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10927--Hsp60\n\nNETWORK SUMMARY: 8 proteins, 7 interactions\n\nNew protein to integrate: alph\n\nPredict the interactions for alph:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10927--alph"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Snr1, yip7\n\nTWO-HYBRID INTERACTIONS:\n  CG12581--CG3085\n  CG12581--CG7987\n  CG12581--Cka\n  CG12581--Jon25Bii\n  CG12581--Jon65Ai\n  CG12581--Jon65Aiii\n  CG12581--Snr1\n  CG12581--yip7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: Jon99Cii\n\nPredict the interactions for Jon99Cii:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12581--Jon99Cii\n  CG3085--Jon99Cii"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG13138--skpF\n  CG14053--CG9316\n  CG4221--skpF\n  CG9316--skpF\n  PCNA--skpF\n  Rca1--skpF\n  ntc--skpF\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  PCNA--PCNA\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG13138--CG13138\n  CG13138--skpF\n  CG14053--CG33017\n  CG14053--CG9316\n  CG14053--skpF\n  CG33017--skpF\n  CG4221--skpF\n  CG9316--skpF\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--skpF\n  Rca1--skpF\n  ntc--skpF\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG32221--skpF\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n\nTWO-HYBRID INTERACTIONS:\n  Acp62F--CG5866\n  CG17666--CG5866\n  CG43367--CG5866\n  CG5866--NimC1\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n\nTWO-HYBRID INTERACTIONS:\n  Acp62F--CG5866\n  CG13196--CG5866\n  CG17666--CG5866\n  CG43367--CG5866\n  CG5866--NimC1\n  CG5866--PlexA\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11790, CG3397, CG6733, CoIV, ng2\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG11790, CoIV\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11790, CG3397, CG6733, CoIV, ng2\n\nTWO-HYBRID INTERACTIONS:\n  CG11790--CG3397\n  CG11790--CG6733\n  CG11790--CoIV\n  CG11790--ng2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG12995, CG13168, CG15578, CG9083, Chi, HLH4C, Trn-SR, cp309, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--CG15578\n  CG11275--Chi\n  CG11275--Chi\n  CG12995--CG15578\n  CG13168--CG15578\n  CG15578--CG9083\n  CG15578--Chi\n  CG15578--HLH4C\n  CG15578--Trn-SR\n  CG15578--cp309\n  CG15578--mbo\n  cp309--cp309\n  cp309--cp309\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n\nTWO-HYBRID INTERACTIONS:\n  Cdlc2--Osi6\n  E(spl)mdelta-HLH--E(spl)mdelta-HLH\n  E(spl)mdelta-HLH--Osi6\n  Osi6--obst-A\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n\nTWO-HYBRID INTERACTIONS:\n  Cdlc2--Osi6\n  Cyp6a22--Osi6\n  E(spl)mdelta-HLH--E(spl)mdelta-HLH\n  E(spl)mdelta-HLH--Osi6\n  HHEX--Osi6\n  Osi6--obst-A\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7386, Npc1b, RpS25, bowl, eIF-5A, odd\n\nTWO-HYBRID INTERACTIONS:\n  CG7386--CG7386\n  CG7386--Npc1b\n  Npc1b--RpS25\n  Npc1b--bowl\n  Npc1b--eIF-5A\n  Npc1b--odd\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--Tollo\n  CG9133--Tollo\n  CG9467--Tollo\n  Rel--Rel\n  Su(var)3-9--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dredd--Dredd\n  Rel--Rel\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dredd--Rel\n  Dredd--Rel\n  Dredd--Tollo\n  Dredd--Tollo\n  Rel--Tollo\n  Rel--Tollo\n  Toll-7--Tollo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tollo--dpp\n  Tollo--dpp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Dredd--Dredd\n  Dredd--Rel\n  Dredd--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nCO-LOCALIZATION INTERACTIONS:\n  18w--Tollo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dredd--Dredd\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Cpr67Fa2, D\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG12182, CG13843, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n\nTWO-HYBRID INTERACTIONS:\n  C15--Cpr67Fa2\n  CG12182--Cpr67Fa2\n  CG13843--CG13843\n  CG13843--Cpr67Fa2\n  CG18563--Cpr67Fa2\n  CG4328--Cpr67Fa2\n  CG6688--Cpr67Fa2\n  CG8907--Cpr67Fa2\n  Cpr67Fa2--D\n  Cpr67Fa2--prt\n  D--D\n  D--D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATP13A2, LSM7, NPY, NPY1R\n- Network density: approximately 0.50\n- Hub proteins (highly connected): NPY1R, LSM7\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATP13A2, LSM7, NPY, NPY1R\n\nTWO-HYBRID INTERACTIONS:\n  ATP13A2--NPY1R\n  LSM7--NPY1R\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  NPY--NPY1R\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10570, CG1461, CG9578, Cpr73D, Vmat"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG1461, CG9578, Cpr73D, Vmat\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG10570--CG9578\n  CG10570--Cpr73D\n  CG10570--Vmat\n  CG1461--CG1461\n  CG9578--CG9578\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG6443--Mpc1\n  CG6443--Nha1\n  CG6443--RpL3\n  CG6443--RpS24\n  CG6443--ebo\n  CG6443--mRpS18B\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL3--RpS24\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15036, CG6443, Mpc1, Nha1, RpL3, RpS24, Sec24CD, ebo, mRpS18B, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG15036--CG6443\n  CG6443--Mpc1\n  CG6443--Nha1\n  CG6443--RpL3\n  CG6443--RpS24\n  CG6443--Sec24CD\n  CG6443--ebo\n  CG6443--mRpS18B\n  CG6443--mts\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL3--RpS24\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt\n- Network density: approximately 1.05\n- Hub proteins (highly connected): CG10144, dor\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt\n\nTWO-HYBRID INTERACTIONS:\n  CG10144--Dcp1\n  CG10144--dor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Dcp1--Dcp1\n  Vps16A--lt\n  car--dor\n  car--dor\n  car--lt\n  dor--lt\n\nCO-FRACTIONATION INTERACTIONS:\n  car--dor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10144--lt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--Rab5\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Rab5--Vps16A\n  Rab5--car\n  Rab5--dor\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10365, CG12589, CG13084, CG3731, Fem-1, Prm, Xrp1, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG10365--CG12589\n  CG10365--CG13084\n  CG10365--CG3731\n  CG10365--Fem-1\n  CG10365--Prm\n  CG10365--Xrp1\n  CG10365--eIF-5A\n\nNETWORK SUMMARY: 8 proteins, 7 interactions\n\nNew protein to integrate: CG32264\n\nPredict the interactions for CG32264:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10365--CG32264"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n\nTWO-HYBRID INTERACTIONS:\n  CG11138--CG15865\n  CG11380--CG13067\n  CG11380--CG15865\n  CG11380--TwdlE\n  CG13067--CG15865\n  CG15865--CG42565\n  CG15865--CG8907\n  CG15865--CG8927\n  CG15865--Cpr72Ea\n  CG15865--Hakai\n  CG15865--TwdlE\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Aats-arg, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-gln--SpdS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-gln\n  Aats-arg--Aats-glupro\n  Aats-arg--Aats-ile\n  Aats-arg--CG12304\n  Aats-arg--CG15100\n  Aats-arg--CG8235\n  Aats-gln--Aats-glupro\n  Aats-gln--Aats-ile\n  Aats-gln--CG12304\n  Aats-gln--CG15100\n  Aats-gln--CG8235\n  Aats-glupro--Aats-ile\n  Aats-glupro--CG12304\n  Aats-glupro--CG15100\n  Aats-glupro--CG8235\n  Aats-ile--CG15100\n  Aats-ile--CG8235\n  CG12304--CG15100\n  CG12304--CG8235\n  CG15100--CG8235\n\nNETWORK SUMMARY: 8 proteins, 21 interactions\n\nNew protein to integrate: Aats-asp\n\nPredict the interactions for Aats-asp:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Aats-asp--CG12304\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-asp\n  Aats-asp--Aats-gln\n  Aats-asp--Aats-glupro\n  Aats-asp--Aats-ile\n  Aats-asp--CG12304\n  Aats-asp--CG15100\n  Aats-asp--CG8235"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Gasp, obst-A, su(Hw)\n\nTWO-HYBRID INTERACTIONS:\n  Gasp--su(Hw)\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gasp--obst-A\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  su(Hw)--su(Hw)\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Gasp, obst-A, su(Hw)\n\nTWO-HYBRID INTERACTIONS:\n  Gasp--su(Hw)\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gasp--obst-A\n  Gasp--obst-A\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  su(Hw)--su(Hw)\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8117, NHP2, S6kII, TfIIFalpha, TfIIFbeta, sima\n\nTWO-HYBRID INTERACTIONS:\n  NHP2--TfIIFalpha\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--TfIIFalpha\n  CG8117--TfIIFbeta\n  S6kII--TfIIFalpha\n  S6kII--TfIIFbeta\n  TfIIFalpha--TfIIFbeta\n  TfIIFalpha--sima\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TfIIFalpha--TfIIFbeta\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: gig\n\nPredict the interactions for gig:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  S6kII--gig\n  TfIIFalpha--gig\n  TfIIFbeta--gig"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM\n- Network density: approximately 0.79\n- Hub proteins (highly connected): ASIC3, STOM\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA, STOM\n\nTWO-HYBRID INTERACTIONS:\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  DLG4--DLG4\n  GOPC--GOPC\n  STOM--STOM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--ASIC3\n  ASIC2--STOM\n  ASIC3--DLG4\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  ASIC3--STOM\n  DLG4--DLG4\n  DLG4--LIN7B\n  GOPC--GOPC\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ASIC3--PRKACA\n  PRKACA--PRKACA\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  STOM--STOM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRKACA--PRKACA\n  STOM--STOM\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  MAGI1--MAGI1\n\nNETWORK SUMMARY: 8 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n- Network density: approximately 0.33\n- Hub proteins (highly connected): IntS14, IntS1\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG5642, Cpr64Ad, IntS1, IntS10, IntS11, IntS12, IntS14, RpL4, eIF-4a\n\nTWO-HYBRID INTERACTIONS:\n  Act5C--Cpr64Ad\n  Act5C--IntS14\n  CG5642--IntS14\n  Cpr64Ad--IntS14\n  IntS1--IntS12\n  IntS10--IntS14\n  IntS10--IntS14\n  IntS14--RpL4\n  IntS14--eIF-4a\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IntS1--IntS11\n  IntS1--IntS12\n  IntS1--IntS14\n  IntS11--IntS12\n  IntS11--IntS14\n  IntS12--IntS14\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ATPCL, CG10137, sgg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, sgg\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10137--sgg\n  CG10137--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt\n- Network density: approximately 0.27\n- Hub proteins (highly connected): eIF4E-7, mxt\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-7\n  CG6304--eIF4E-7\n  CG9775--eIF4E-7\n  Gld2--eIF4E-7\n  Thor--eIF4E-7\n  Thor--eIF4E-7\n  cup--eIF4E-7\n  eIF4E-7--eIF4G\n  eIF4E-7--eIF4G2\n  eIF4E-7--mxt\n  eIF4E-7--mxt\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  eIF4E-7--eIF4G\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11125, CG13868, CG33970, Cdlc2, ctp, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG11125--CG33970\n  CG11125--Cdlc2\n  CG11125--Cdlc2\n  CG11125--ctp\n  CG11125--vari\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: m-cup\n\nPredict the interactions for m-cup:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11125--m-cup"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG3353\n  CG3353--CG3919\n  CG3353--Fancd2\n  CG3353--Hel25E\n  CG3353--Mlf\n  CG3353--NFAT\n  CG3353--RpL40\n  CG3353--cindr\n  CG3353--esn\n  CG3919--CG3919\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fancd2--Fancd2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG3499, Tig, ci, pgant3\n\nTWO-HYBRID INTERACTIONS:\n  CG3499--Tig\n  Tig--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Tig--pgant3\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: CG4335\n\nPredict the interactions for CG4335:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG4335--CG4335\n  CG4335--Tig"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n- Network density: approximately 0.86\n- Hub proteins (highly connected): Tbp, Taf13\n- Total interactions: approximately 31"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n\nTWO-HYBRID INTERACTIONS:\n  Hoxd12--Taf13\n  Jdp2--Jdp2\n  Jdp2--Taf13\n  Taf11--Taf13\n  Taf11--Taf13\n  Taf13--Tbp\n  Taf13--TfIIA-L\n\nCO-PURIFICATION INTERACTIONS:\n  Taf6--e(y)3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Jdp2--Jdp2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Taf11\n  Taf11--Tbp\n  Taf11--Tbp\n  Taf13--e(y)3\n  Taf13--e(y)3\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Tbp--TfIIA-L\n  Tbp--TfIIA-L\n  Tbp--e(y)3\n  Tbp--e(y)3\n  Tbp--e(y)3\n  TfIIA-L--TfIIA-L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Taf11--Taf6\n  Taf11--Tbp\n  Taf13--Taf6\n  Taf6--Tbp\n\nCO-FRACTIONATION INTERACTIONS:\n  Tbp--e(y)3\n\nPOSITIVE GENETIC INTERACTIONS:\n  Fitm2--Taf13\n\nNETWORK SUMMARY: 9 proteins, 31 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2\n- Network density: approximately 4.00\n- Hub proteins (highly connected): CFTR, SLC9A3R1\n- Total interactions: approximately 40"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2\n\nTWO-HYBRID INTERACTIONS:\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n  SLC9A3R1--SLC9A3R1\n  SLC9A3R1--SLC9A3R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  CFTR--KCNJ1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nFAR WESTERN INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  KCNJ1--SH3RF1\n  SH3RF1--SH3RF1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  CFTR--SLC9A3R2\n  SLC9A3R1--SLC9A3R2\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nNETWORK SUMMARY: 5 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG5149\n  CG11474--CG5149\n  CG15365--CG5149\n  CG5149--CG8449\n  CG5149--His2A:CG31618\n  CG5149--eIF-5A\n\nPCA INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG11474, CG15365, CG15631, CG5149, CG6287, CG8449, CG8635, His2A:CG31618, eIF-5A\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG5149\n  CG11474--CG5149\n  CG15365--CG5149\n  CG15631--CG5149\n  CG5149--CG6287\n  CG5149--CG8449\n  CG5149--CG8635\n  CG5149--His2A:CG31618\n  CG5149--eIF-5A\n\nPCA INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  His2A:CG31618--His2A:CG31618\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG9821, Dcp1, Mst84Dc, cdc2\n- Network density: approximately 1.00\n- Hub proteins (highly connected): Dcp1, CG9821\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9821, Dcp1, Mst84Dc, cdc2\n\nTWO-HYBRID INTERACTIONS:\n  CG9821--Dcp1\n  CG9821--Mst84Dc\n  CG9821--cdc2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG4461, CG10051\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG4461\n  CG30324--CG4461\n  CG4461--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4461--Hsp60\n  CG4461--HtrA2\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10426, CG17698, CG3309, CG34380, bdg, p53"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG17698, CG3309, CG34380, bdg, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG17698\n  CG10426--CG3309\n  CG10426--CG34380\n  CG10426--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10426--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CtBP, Lim3, NK7.1, Ubx, abd-A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CtBP, Lim3, NK7.1, Ubx, abd-A\n\nTWO-HYBRID INTERACTIONS:\n  CtBP--CtBP\n  CtBP--NK7.1\n  Lim3--NK7.1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ubx--abd-A\n  Ubx--abd-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n  CtBP--Ubx\n\nPCA INTERACTIONS:\n  CtBP--Ubx\n  CtBP--Ubx\n  CtBP--abd-A\n  NK7.1--Ubx\n  NK7.1--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CtBP--Ubx\n\nNETWORK SUMMARY: 5 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl\n\nTWO-HYBRID INTERACTIONS:\n  Acp26Aa--AdipoR\n  AdipoR--CG1418\n  AdipoR--Chrac-16\n  AdipoR--Hsp23\n  AdipoR--Mes4\n  AdipoR--cpa\n  AdipoR--debcl\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Hsp23--Hsp26\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl\n\nTWO-HYBRID INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n  Acp26Aa--AdipoR\n  AdipoR--CG1418\n  AdipoR--CG8997\n  AdipoR--Chrac-16\n  AdipoR--Hsp23\n  AdipoR--Hsp26\n  AdipoR--Mes4\n  AdipoR--cpa\n  AdipoR--debcl\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp23--Hsp26\n\nCO-FRACTIONATION INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Acp26Aa--Acp26Aa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Hsp23--Hsp26\n  Hsp23--Hsp26\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10470, Hrs, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--sky\n  Rab7--Vps39\n  TSG101--TSG101\n  TSG101--TSG101\n  TSG101--TSG101\n  shrb--shrb\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  TSG101--TSG101\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--sky\n\nPCA INTERACTIONS:\n  TSG101--TSG101\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hrs--sky\n  Rab7--sky\n  TSG101--sky\n  Vps25--sky\n  Vps39--sky\n  shrb--sky\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  orb2--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 9 proteins, 27 interactions\n\nNew protein to integrate: Rab5\n\nPredict the interactions for Rab5:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Rab5--Rab7\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Rab5--sky"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cyp6a22, Osi6, l(1)G0193, p53\n- Network density: approximately 1.00\n- Hub proteins (highly connected): p53, Cyp6a22\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp6a22, Osi6, l(1)G0193, p53\n\nTWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cyp6a22--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a22--l(1)G0193\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--hoe1\n  CG14183--hoe1\n  CG8840--hoe1\n  CanA1--hoe1\n  Pp2B-14D--hoe1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CanA1--Pp2B-14D\n\nPROTEIN-RNA INTERACTIONS:\n  Sxl--hoe1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11275, CG13168, CG14183, CG15631, CG32086, CG8840, CanA1, Pp2B-14D, Sxl, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG11275--hoe1\n  CG13168--hoe1\n  CG14183--hoe1\n  CG15631--CG32086\n  CG15631--hoe1\n  CG32086--hoe1\n  CG8840--hoe1\n  CanA1--hoe1\n  Pp2B-14D--hoe1\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CanA1--Pp2B-14D\n\nPROTEIN-RNA INTERACTIONS:\n  Sxl--hoe1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10948, CG6763, Ppn, gammaSnap1\n\nTWO-HYBRID INTERACTIONS:\n  CG10948--CG6763\n  CG6763--Ppn\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10948, CG6763, Ppn, gammaSnap1\n\nTWO-HYBRID INTERACTIONS:\n  CG10948--CG6763\n  CG6763--Ppn\n  CG6763--gammaSnap1\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Argk, CG10949, CG14315, CG6683, Prm, RyR, Tm2, kdn, l(2)01289\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG14315--CG6683\n  CG6683--CG6683\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--CG14315\n  Argk--Prm\n  Argk--Tm2\n  Argk--kdn\n  CG10949--CG6683\n  CG14315--Prm\n  CG14315--RyR\n  CG14315--Tm2\n  CG14315--kdn\n  CG14315--l(2)01289\n  Prm--Tm2\n  Prm--kdn\n  RyR--l(2)01289\n  Tm2--kdn\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 9 proteins, 19 interactions\n\nNew protein to integrate: Mhc\n\nPredict the interactions for Mhc:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--Mhc\n  CG14315--Mhc\n  Mhc--Prm\n  Mhc--Tm2\n  Mhc--kdn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mhc--Tm2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Mhc--Mhc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12081, Ntf-2, Ntf-2r, Scm"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12081, Ntf-2, Ntf-2r, Scm\n\nTWO-HYBRID INTERACTIONS:\n  CG12081--Ntf-2r\n  Ntf-2--Ntf-2\n  Ntf-2--Ntf-2r\n  Ntf-2r--Scm\n  Scm--Scm\n  Scm--Scm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Scm--Scm\n  Scm--Scm\n\nNETWORK SUMMARY: 4 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2641, CG8494, Tom20, fd64A, zuc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2641--CG8494\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--Tom20\n  CG8494--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2641, CG8494, Tom20, fd64A, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8494--fd64A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2641--CG8494\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8494--Tom20\n  CG8494--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATPsyn-beta, CG10340, CG17230, LIMK1\n- Network density: approximately 1.00\n- Hub proteins (highly connected): LIMK1, CG10340\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10340, CG17230, LIMK1\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--CG10340\n  CG10340--CG17230\n  CG10340--LIMK1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LIMK1--LIMK1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--CG10340\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--Vsx2\n  CG9331--Spred\n  Spred--Vsx2\n  Spred--angel\n  Spred--ms(3)K81\n  Vsx2--hale\n  hale--hale\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Spred--stau\n  stau--stau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stau--stau\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG9331, Pms2, Spred, Vsx2, angel, hale, ms(3)K81, stau, ttm50\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--Spred\n  CG10209--Vsx2\n  CG9331--Spred\n  Pms2--Spred\n  Spred--Vsx2\n  Spred--angel\n  Spred--hale\n  Spred--ms(3)K81\n  Spred--ttm50\n  Vsx2--hale\n  hale--hale\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Spred--stau\n  stau--stau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stau--stau\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17018, CG42565, CG7724, Gk, Hsl, Lsd-1, Rab2, bmm, fd64A\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--Hsl\n  CG42565--Hsl\n  CG7724--Hsl\n  Gk--Hsl\n  Hsl--fd64A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Hsl--Lsd-1\n  Hsl--bmm\n  Lsd-1--bmm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsl--Rab2\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: hale\n\nPredict the interactions for hale:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42565--hale\n  Hsl--hale\n  hale--hale"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14011, CG44243, CG7357, CG7386, CG9911, Ef1beta, RpS17, cav, eIF-4a, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG14011--CG44243\n  CG14011--CG7357\n  CG14011--CG7386\n  CG14011--CG9911\n  CG14011--Ef1beta\n  CG14011--RpS17\n  CG14011--cav\n  CG14011--eIF-4a\n  CG14011--rau\n  CG7386--CG7386\n  CG7386--rau\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n- Network density: approximately 0.42\n- Hub proteins (highly connected): Su(var)205, CG15293\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13510, CG15293, CG18067, CG32425, CG40045, PlexA, RpS20, Su(var)205, l(2)05714, shg\n\nTWO-HYBRID INTERACTIONS:\n  CG13510--CG15293\n  CG15293--CG18067\n  CG15293--CG32425\n  CG15293--CG40045\n  CG15293--PlexA\n  CG15293--RpS20\n  CG15293--Su(var)205\n  CG15293--l(2)05714\n  CG15293--shg\n  RpS20--l(2)05714\n  l(2)05714--l(2)05714\n  l(2)05714--l(2)05714\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Su(var)205--Su(var)205\n\nCO-FRACTIONATION INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Su(var)205--Su(var)205\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Su(var)205--Su(var)205\n  Su(var)205--Su(var)205\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31550, Chro, Gale, Galk, Galt, Sec24AB, TTLL3B, UGP, bsh, sgl\n\nTWO-HYBRID INTERACTIONS:\n  CG31550--Galt\n  Chro--Galt\n  Gale--Gale\n  Galt--Sec24AB\n  Galt--TTLL3B\n  Galt--bsh\n  UGP--UGP\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Galk--Galt\n  Galt--sgl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gale--Galt\n  Gale--Galt\n  Galt--UGP\n  Galt--UGP\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n  ATPCL--CG11486\n  ATPCL--CG13454\n  ATPCL--CG14253\n  ATPCL--l(1)G0020\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATPCL--Tom20\n  Tom20--Tom20\n  Tom20--sea\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n  ATPCL--CG11486\n  ATPCL--CG13454\n  ATPCL--CG14253\n  ATPCL--CG30263\n  ATPCL--l(1)G0020\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  ATPCL--sea\n  ATPCL--sea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPCL--sba\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATPCL--Tom20\n  Tom20--Tom20\n  Tom20--sea\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n\nTWO-HYBRID INTERACTIONS:\n  CG17107--l(2)37Ce\n  betaTub60D--l(2)37Ce\n  dyn-p25--l(2)37Ce\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--Dmn\n  Arp10--dyn-p25\n  Arp10--l(2)06496\n  Arp10--l(2)37Ce\n  CG12042--Dmn\n  CG12042--dyn-p25\n  CG12042--l(2)06496\n  CG12042--l(2)37Ce\n  Dmn--l(2)06496\n  l(2)06496--l(2)37Ce\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG12042--Tom20\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n\nTWO-HYBRID INTERACTIONS:\n  CG15631--l(2)37Ce\n  CG17107--l(2)37Ce\n  betaTub60D--l(2)37Ce\n  dyn-p25--l(2)37Ce\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--CG12042\n  Arp10--Dmn\n  Arp10--dyn-p25\n  Arp10--l(2)06496\n  Arp10--l(2)37Ce\n  CG12042--Dmn\n  CG12042--dyn-p25\n  CG12042--l(2)06496\n  CG12042--l(2)37Ce\n  Dmn--dyn-p25\n  Dmn--l(2)06496\n  Dmn--l(2)37Ce\n  l(2)06496--l(2)37Ce\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG12042--Tom20\n  Tom20--Tom20\n  Tom20--l(2)37Ce\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14323, CG31211, CG5343, eIF4AIII, mago, polo, rictor, su(w[a]), w\n\nTWO-HYBRID INTERACTIONS:\n  CG14323--CG31211\n  CG14323--su(w[a])\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--su(w[a])\n  CG5343--su(w[a])\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  su(w[a])--w\n  su(w[a])--w\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG5343--rictor\n  rictor--su(w[a])\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  eIF4AIII--mago\n  polo--polo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  eIF4AIII--su(w[a])\n  mago--su(w[a])\n\nFRET INTERACTIONS:\n  polo--polo\n\nPROTEIN-RNA INTERACTIONS:\n  polo--su(w[a])\n\nNETWORK SUMMARY: 9 proteins, 20 interactions\n\nNew protein to integrate: CG31550\n\nPredict the interactions for CG31550:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG31550--su(w[a])"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1\n- Network density: approximately 0.39\n- Hub proteins (highly connected): CG10710, CtBP\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG10710, CG11796, CG42369, CG4328, CtBP, Hakai, Pih1D1\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG10710\n  CG10710--CG11796\n  CG10710--CG42369\n  CG10710--CG4328\n  CG10710--CtBP\n  CG10710--Hakai\n  CG10710--Pih1D1\n  CG11796--CG11796\n  CtBP--CtBP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11523, CG6428, Marf, NC2alpha, RpS18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG6428, Marf, NC2alpha, RpS18\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG6428\n  CG6428--Marf\n  CG6428--NC2alpha\n  CG6428--RpS18\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--CG17162\n  CG10927--CG3225\n  CG10927--CG33129\n  CG10927--CG6020\n  CG10927--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10927--Hsp60\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--CG17162\n  CG10927--CG3225\n  CG10927--CG33129\n  CG10927--CG6020\n  CG10927--Tollo\n  CG10927--alph\n  CG10927--robl62A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10927--Hsp60\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10126, CG6020, ced-6, crn, rti, rux\n\nTWO-HYBRID INTERACTIONS:\n  CG10126--ced-6\n  CG10126--crn\n  crn--rux\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--CG6020\n  CG10126--rti\n  CG10126--rux\n  CG6020--rti\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ced-6--ced-6\n\nNETWORK SUMMARY: 6 proteins, 9 interactions\n\nNew protein to integrate: Smn\n\nPredict the interactions for Smn:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Smn--Smn\n  Smn--Smn\n  Smn--Smn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10126--Smn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Smn--Smn\n  Smn--Smn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG6707--Cas\n  Cas--Cpn\n  Cas--Hakai\n  Cas--Pen\n  Cas--Vsx2\n  Cas--dsx\n  Cas--nocte\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cas--scra\n  Pen--scra\n  fra--fra\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cas--fra\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n- Network density: approximately 0.31\n- Hub proteins (highly connected): Sirt7, polo\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Sirt7\n  Sirt7--Vap-33B\n  Sirt7--ergic53\n  Sirt7--polo\n  Sirt7--rhea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Foxp3--Sirt7\n  Foxp3--Zfp512\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  Recql--Sirt7\n  Rrp7a--Sirt7\n  Sirt7--Zfp512\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG16947, CG8316, Rcd-1r, Vang, pwn\n\nTWO-HYBRID INTERACTIONS:\n  CG8316--pwn\n  Rcd-1r--pwn\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Vang--pwn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Vang--Vang\n  Vang--Vang\n  Vang--Vang\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16947, CG8316, Rcd-1r, Vang, pwn\n\nTWO-HYBRID INTERACTIONS:\n  CG16947--pwn\n  CG8316--pwn\n  Rcd-1r--pwn\n  Vang--Vang\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Vang--pwn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Vang--Vang\n  Vang--Vang\n  Vang--Vang\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin\n\nTWO-HYBRID INTERACTIONS:\n  Atx-1--CG10348\n  CG10348--CG31612\n  CG10348--CG4168\n  CG10348--CG9902\n  CG10348--CtBP\n  CG10348--gus\n  CG31612--Rel\n  CtBP--CtBP\n  Rel--Rel\n  Rel--tin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin\n\nTWO-HYBRID INTERACTIONS:\n  Atx-1--CG10348\n  CG10348--CG31612\n  CG10348--CG4168\n  CG10348--CG9902\n  CG10348--CtBP\n  CG10348--Rel\n  CG10348--gus\n  CG10348--tin\n  CG31612--Rel\n  CtBP--CtBP\n  Rel--Rel\n  Rel--tin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CtBP--Rel\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atx-1, CG10348, CG31612, CG4168, CG9902, CtBP, Rel, gus, tin\n\nTWO-HYBRID INTERACTIONS:\n  Atx-1--CG10348\n  CG10348--CG31612\n  CG10348--CG4168\n  CG10348--CG9902\n  CG10348--CtBP\n  CG10348--Rel\n  CG10348--gus\n  CG10348--tin\n  CG31612--Rel\n  CtBP--CtBP\n  Rel--Rel\n  Rel--tin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CtBP--Rel\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C15, CG13032, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG6972\n  CG13032--CG6972\n  CG3213--CG6972\n  CG6972--CG7046\n  CG6972--HLH4C\n  CG6972--Lim3\n  CG6972--Rbp\n  CG6972--TFAM\n  HLH4C--Lim3\n\nPCA INTERACTIONS:\n  CG7046--CG7046\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG17666\n\nPredict the interactions for CG17666:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13032--CG17666\n  CG17666--CG6972"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, CG1444, CG14482, CG33303, CG42369, dl, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--CG42369\n  CG10470--dl\n  CG10470--sky\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG1444\n  CG10470--CG14482\n  CG10470--CG33303\n  CG1444--CG14482\n  CG1444--CG33303\n  CG14482--CG33303\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Gasp, obst-A, su(Hw)\n- Network density: approximately 1.33\n- Hub proteins (highly connected): Gasp, su(Hw)\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Gasp, obst-A, su(Hw)\n\nTWO-HYBRID INTERACTIONS:\n  Gasp--su(Hw)\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Gasp--obst-A\n  Gasp--obst-A\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  su(Hw)--su(Hw)\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so\n\nTWO-HYBRID INTERACTIONS:\n  CG10576--CG9083\n  CG10576--Es2\n  CG10576--so\n  CG9083--so\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10576--CG2862\n  CG10576--CG30339\n  CG10576--dUTPase\n\nCO-FRACTIONATION INTERACTIONS:\n  dUTPase--dUTPase\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10576--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n\nTWO-HYBRID INTERACTIONS:\n  CG10914--CG15631\n  CG10914--CG15676\n  CG10914--CG3528\n  CG10914--CG7009\n  CG10914--GstE1\n  CG15631--CG15676\n\nNETWORK SUMMARY: 6 proteins, 6 interactions\n\nNew protein to integrate: CG10635\n\nPredict the interactions for CG10635:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10635--CG10914"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG33095, Dlc90F\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3085, CG33095, CG6523, Dlc90F, Lmpt, Rcd-1r, Vps28, fra, kermit, nuf\n\nTWO-HYBRID INTERACTIONS:\n  CG3085--CG33095\n  CG33095--CG6523\n  CG33095--Dlc90F\n  CG33095--Lmpt\n  CG33095--Rcd-1r\n  CG33095--Vps28\n  CG33095--kermit\n  CG33095--nuf\n  CG6523--Lmpt\n  Dlc90F--Dlc90F\n  nuf--nuf\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33095--fra\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10014, CG11327, CG17770, CG32392, Cam, Poxm\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG10014, CG32392\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10014, CG11327, CG17770, CG32392, Cam, Poxm\n\nTWO-HYBRID INTERACTIONS:\n  CG10014--CG11327\n  CG10014--CG17770\n  CG10014--Cam\n  CG10014--Cam\n  CG10014--Poxm\n  CG32392--Poxm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10014--CG32392\n  CG10014--CG32392\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10014--CG32392\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn, enok\n\nTWO-HYBRID INTERACTIONS:\n  Br140--CG16838\n  CG17244--CG9293\n  CG32809--CG9293\n  CG7997--CG9293\n  CG9293--GM130\n  CG9293--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG16838--enok\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG9293\n  Br140--CG9293\n  Br140--CG9293\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--enok\n  Br140--enok\n  Br140--enok\n  CG16838--CG9293\n  CG16838--Eaf6\n  CG16838--enok\n  CG16838--enok\n  CG9293--Eaf6\n  CG9293--Eaf6\n  CG9293--enok\n  CG9293--enok\n  Eaf6--enok\n  Eaf6--enok\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  CG16838--enok\n  CG16838--enok\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Br140--enok\n\nNETWORK SUMMARY: 10 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6766, Fer1HCH, Hrd3, Hsl, apt\n\nTWO-HYBRID INTERACTIONS:\n  CG6766--Hsl\n  CG6766--apt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Fer1HCH\n  Fer1HCH--Hrd3\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6766, Fer1HCH, Hrd3, Hsl, apt\n\nTWO-HYBRID INTERACTIONS:\n  CG6766--Hsl\n  CG6766--apt\n  apt--apt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6766--Fer1HCH\n  CG6766--Hrd3\n  Fer1HCH--Hrd3\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2316, DIP1, drm, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG2316--drm\n  DIP1--DIP1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG2316--DIP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 4 proteins, 8 interactions\n\nNew protein to integrate: Tom20\n\nPredict the interactions for Tom20:"
-      },
-      {
-        "role": "assistant",
-        "content": "PROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--Tom20\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1\n- Network density: approximately 0.38\n- Hub proteins (highly connected): LY9, PTPN11\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP2M1, DDX19B, EDEM3, GUSB, HLA-F, IDUA, LY9, PTPN11, SH2D1A, Sh2d1b1\n\nTWO-HYBRID INTERACTIONS:\n  AP2M1--LY9\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LY9--PTPN11\n  LY9--SH2D1A\n  LY9--SH2D1A\n  LY9--Sh2d1b1\n  PTPN11--PTPN11\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AP2M1--AP2M1\n  DDX19B--LY9\n  EDEM3--LY9\n  GUSB--LY9\n  HLA-F--LY9\n  IDUA--LY9\n  PTPN11--PTPN11\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX19B--DDX19B\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou\n\nTWO-HYBRID INTERACTIONS:\n  CG8290--lig3\n  Cul2--MEP-1\n  Cul2--PCNA\n  Cul2--lig3\n  MEP-1--PCNA\n  lig3--tou\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  PCNA--PCNA\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG8290, Cul2, MEP-1, PCNA, lig3, tou\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--lig3\n  CG8290--lig3\n  Cul2--MEP-1\n  Cul2--PCNA\n  Cul2--lig3\n  MEP-1--PCNA\n  MEP-1--lig3\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--lig3\n  lig3--tou\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MEP-1--MEP-1\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10219, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10219--CG1416\n  CG10219--CG17826\n  CG10219--CG31775\n  CG10219--CG5172\n  CG10219--Obp57c\n  CG10219--Tapdelta\n  CG10219--Tim9a\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1416--Tapdelta\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG10219--smg\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG12158\n\nPredict the interactions for CG12158:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10219--CG12158"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl\n- Network density: approximately 0.43\n- Hub proteins (highly connected): Zmynd10, Rtnl1\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Hsp68, Nutm1, Rtnl1, Xkrx, Zmynd10, tilB, yl\n\nTWO-HYBRID INTERACTIONS:\n  Hsp68--Zmynd10\n  Rtnl1--Rtnl1\n  Zmynd10--tilB\n  Zmynd10--yl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rtnl1--Rtnl1\n  Rtnl1--Zmynd10\n  Rtnl1--Zmynd10\n\nCO-FRACTIONATION INTERACTIONS:\n  Nutm1--Zmynd10\n  Xkrx--Zmynd10\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15116, Oxp, rhi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG15116--Oxp\n  CG15116--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15116--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: CG10321\n\nPredict the interactions for CG10321:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10321--CG15116"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13747, CG17364, CG5151, CG7778, CG8191, kra\n\nTWO-HYBRID INTERACTIONS:\n  CG13747--CG8191\n  CG17364--CG8191\n  CG5151--CG8191\n  CG7778--CG8191\n  CG8191--kra\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: CG11200\n\nPredict the interactions for CG11200:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11200--CG8191"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG2046, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG2046--Gtp-bp\n  Gtp-bp--TwdlE\n  Gtp-bp--obst-E\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gtp-bp--Orco\n  Gtp-bp--S6kII\n  Gtp-bp--SrpRbeta\n  Gtp-bp--gig\n  Gtp-bp--rictor\n  S6kII--gig\n\nFRET INTERACTIONS:\n  Orco--Orco\n  Orco--Orco\n\nPCA INTERACTIONS:\n  Orco--Orco\n\nNETWORK SUMMARY: 9 proteins, 12 interactions\n\nNew protein to integrate: CG33017\n\nPredict the interactions for CG33017:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG33017--Gtp-bp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10205, CG10362, CG17019, CG6357\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10205, CG17019\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10205, CG10362, CG17019, CG6357\n\nTWO-HYBRID INTERACTIONS:\n  CG10205--CG10362\n  CG10205--CG17019\n  CG10205--CG6357\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10209, CG15458, CG31958, Pex19\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG15458--Pex19\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10209, CG15458, CG31958, Pex19\n\nTWO-HYBRID INTERACTIONS:\n  CG10209--CG10209\n  CG10209--CG10209\n  CG10209--CG15458\n  CG10209--CG15458\n  CG15458--CG31958\n  CG15458--Pex19\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11322, CG2656, CG3704\n\nTWO-HYBRID INTERACTIONS:\n  CG11322--CG3704\n  CG2656--CG3704\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG10222\n\nPredict the interactions for CG10222:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10222--CG3704"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG10621--CG13245\n  CG10621--CG2931\n  CG10621--Efa6\n  CG10621--Lin29\n  Cpr100A--Cpr100A\n  Efa6--Efa6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG10621--CG13245\n  CG10621--CG2931\n  CG10621--Cpr100A\n  CG10621--Efa6\n  CG10621--Lin29\n  CG10621--TfIIEbeta\n  CG10621--rau\n  Cpr100A--Cpr100A\n  Efa6--Efa6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG15717--CG8525\n  CG7675--W\n  CG8003--Corp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--CG15717\n  AnxB10--CG7675\n  AnxB10--CG8525\n  AnxB10--Corp\n  CG15717--CG7675\n  CG15717--CG8525\n  CG15717--Corp\n  CG7675--CG8525\n  CG7675--Corp\n  CG8525--Corp\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Corp--rpr\n  W--rpr\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Corp--p53\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG15717--CG8525\n  CG7675--W\n  CG8003--Corp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--CG15717\n  AnxB10--CG7675\n  AnxB10--CG8525\n  AnxB10--Corp\n  CG15717--CG7675\n  CG15717--CG8525\n  CG15717--Corp\n  CG7675--CG8525\n  CG7675--Corp\n  CG8525--Corp\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Corp--W\n  Corp--p53\n  Corp--rpr\n  W--p53\n  W--p53\n  W--p53\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Corp--p53\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Corp--p53\n  Corp--p53\n  W--rpr\n  W--rpr\n  p53--p53\n  p53--p53\n  p53--p53\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 9 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD\n- Network density: approximately 0.33\n- Hub proteins (highly connected): mex1, lwr\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--mex1\n  CG13704--mex1\n  CG14074--CG14074\n  CG14074--lwr\n  CG14074--mex1\n  CG8083--mex1\n  CG8909--mex1\n  Syt12--mex1\n  Syt12--ninaD\n  ZnT41F--ZnT41F\n  ZnT41F--mex1\n  lwr--lwr\n  lwr--lwr\n  lwr--mex1\n  mex1--ninaD\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc\n\nTWO-HYBRID INTERACTIONS:\n  CG1319--mRpS17\n  CG5009--mRpS17\n  Gip--mRpS17\n  Mal-A4--mRpS17\n  Pburs--mRpS17\n  St4--mRpS17\n  mRpS17--pck\n  mRpS17--toc\n\nCO-FRACTIONATION INTERACTIONS:\n  Pburs--Pburs\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Gip--Tom20\n  Tom20--Tom20\n  Tom20--mRpS17\n  Tom20--toc\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip\n- Network density: approximately 0.43\n- Hub proteins (highly connected): Shroom, CG1598\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11382, CG1598, CG3838, CG42820, CG6357, Shroom, pip\n\nTWO-HYBRID INTERACTIONS:\n  CG11382--CG1598\n  CG1598--CG3838\n  CG1598--CG42820\n  CG1598--CG6357\n  CG1598--Shroom\n  CG1598--pip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Shroom--Shroom\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Shroom--Shroom\n\nCO-FRACTIONATION INTERACTIONS:\n  Shroom--Shroom\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17658, Pat1, scpr-B, scpr-C\n\nTWO-HYBRID INTERACTIONS:\n  CG17658--Pat1\n  CG17658--scpr-B\n  CG17658--scpr-C\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17658, Pat1, scpr-B, scpr-C\n\nTWO-HYBRID INTERACTIONS:\n  CG17658--Pat1\n  CG17658--scpr-B\n  CG17658--scpr-C\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  scpr-B--scpr-C\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10344, CG12012, CG1746, CG30160, Tsp42Eb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG10344--CG1746\n  CG10344--CG30160\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG12012, CG1746, CG30160, Tsp42Eb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG10344--CG1746\n  CG10344--CG30160\n  CG10344--Tsp42Eb\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8155--p47\n  CTPsyn--CTPsyn\n  Chi--p47\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TER94--p47\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n  RpS27A--TER94\n  RpS27A--p47\n  TER94--TER94\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8155--zuc\n  CTPsyn--CTPsyn\n  CTPsyn--p47\n  p47--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG10589--Phm\n  CG9986--Phm\n  Hey--Phm\n  Met75Ca--Phm\n  Met75Cb--Phm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Phm--nej\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  nej--nej\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, sima, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Hnf4\n  CG11164--Ubx\n  Gadd45--Hnf4\n  Hnf4--Hr78\n  Hnf4--Rel\n  Hnf4--sima\n  Hnf4--spi\n  Hr78--Rel\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ubx--abd-A\n  Ubx--abd-A\n  abd-A--spi\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nPCA INTERACTIONS:\n  Hnf4--Ubx\n  Hnf4--abd-A\n  Hr78--Ubx\n  Hr78--Ubx\n  Hr78--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nNETWORK SUMMARY: 9 proteins, 21 interactions\n\nNew protein to integrate: mdy\n\nPredict the interactions for mdy:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hnf4--mdy\n  Hnf4--mdy"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000\n- Network density: approximately 0.86\n- Hub proteins (highly connected): Fmr1, mGluR\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9170, CaMKII, Fmr1, Psn, gb, homer, mGluR, mir-1000\n\nTWO-HYBRID INTERACTIONS:\n  CG9170--mGluR\n  Psn--Psn\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Fmr1--mGluR\n  Fmr1--mGluR\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CaMKII--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Fmr1--mGluR\n  Psn--mGluR\n  gb--mGluR\n  mGluR--mir-1000\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CaMKII--Fmr1\n  Fmr1--Fmr1\n  Fmr1--Fmr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fmr1--Fmr1\n  homer--mGluR\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n  CaMKII--CaMKII\n\nCO-FRACTIONATION INTERACTIONS:\n  CaMKII--CaMKII\n\nPCA INTERACTIONS:\n  Psn--Psn\n  Psn--Psn\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Psn--Psn\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10344, CG12012, CG1746, CG30160, Tsp42Eb\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG10344, CG12012\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10344, CG12012, CG1746, CG30160, Tsp42Eb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG10344--CG1746\n  CG10344--CG30160\n  CG10344--Tsp42Eb\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG33017, CG9850, Crk, E5, dlg1, wg, wls\n\nTWO-HYBRID INTERACTIONS:\n  CG33017--CG9850\n  CG9850--Crk\n  CG9850--E5\n  CG9850--dlg1\n  dlg1--dlg1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  CG9850--wls\n  wg--wls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  wg--wls\n  wg--wls\n\nCO-FRACTIONATION INTERACTIONS:\n  dlg1--dlg1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  dlg1--dlg1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG9850--wg\n\nNETWORK SUMMARY: 7 proteins, 20 interactions\n\nNew protein to integrate: Grip91\n\nPredict the interactions for Grip91:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG9850--Grip91"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1\n\nTWO-HYBRID INTERACTIONS:\n  CG11652--CG16717\n  CG13097--CG16717\n  CG13458--SH3PX1\n  CG16717--SH3PX1\n  SH3PX1--SH3PX1\n  SH3PX1--SH3PX1\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11652, CG13097, CG13458, CG16717, SH3PX1, Trf4-1\n\nTWO-HYBRID INTERACTIONS:\n  CG11652--CG16717\n  CG13097--CG16717\n  CG13458--CG16717\n  CG13458--SH3PX1\n  CG16717--SH3PX1\n  CG16717--Trf4-1\n  SH3PX1--SH3PX1\n  SH3PX1--SH3PX1\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  Blm--mtDNA-helicase\n  CG10721--mtDNA-helicase\n  Mlh1--mtDNA-helicase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3262--mtDNA-helicase\n  Coprox--Iap2\n  EndoG--Iap2\n  EndoG--Su(P)\n  EndoG--mtDNA-helicase\n  Iap2--Mpcp\n  Iap2--Su(P)\n  Mpcp--mtDNA-helicase\n  Su(P)--mtDNA-helicase\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blm, CG10721, CG3262, Coprox, EndoG, Iap2, Mlh1, Mpcp, Su(P), mtDNA-helicase\n\nTWO-HYBRID INTERACTIONS:\n  Blm--mtDNA-helicase\n  CG10721--mtDNA-helicase\n  Mlh1--mtDNA-helicase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3262--Iap2\n  CG3262--mtDNA-helicase\n  Coprox--Iap2\n  Coprox--mtDNA-helicase\n  EndoG--Iap2\n  EndoG--Su(P)\n  EndoG--mtDNA-helicase\n  Iap2--Iap2\n  Iap2--Mpcp\n  Iap2--Su(P)\n  Iap2--mtDNA-helicase\n  Mpcp--mtDNA-helicase\n  Su(P)--mtDNA-helicase\n\nCO-FRACTIONATION INTERACTIONS:\n  EndoG--EndoG\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--GstE1\n  CG10914--GstE1\n  CG11964--GstE1\n  CG15602--GstE1\n  FER--GstE1\n  GstE1--kermit\n  GstE1--sba\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FER--FER\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPsyn-beta, CG10914, CG11964, CG15602, CG8206, FER, GstE1, cnc, kermit, sba\n\nTWO-HYBRID INTERACTIONS:\n  ATPsyn-beta--GstE1\n  CG10914--GstE1\n  CG11964--GstE1\n  CG15602--GstE1\n  CG8206--GstE1\n  FER--GstE1\n  GstE1--cnc\n  GstE1--kermit\n  GstE1--sba\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  FER--FER\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FER--FER\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPsyn-beta--sba\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42676, CG5375, Gcn2, Pten, Src64B, hppy, sav, slif\n\nTWO-HYBRID INTERACTIONS:\n  CG42676--slif\n  CG5375--slif\n  Src64B--Src64B\n  Src64B--slif\n  sav--slif\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Pten--slif\n  hppy--slif\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Gcn2--slif\n  Pten--hppy\n  Pten--slif\n  hppy--slif\n\nFRET INTERACTIONS:\n  sav--sav\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Pten--Pten\n\nNETWORK SUMMARY: 8 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7196, Cdk5, Csnk2b, Fibp, Gsk3b, Mib1, OTUD4, Tm1, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG7196--Fibp\n  Tm1--Tm1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cdk5--Mib1\n  Cdk5--Mib1\n  Csnk2b--Mib1\n  Fibp--Mib1\n  Fibp--Tm1\n  Fibp--zip\n  Mib1--Mib1\n  Tm1--zip\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Cdk5--Mib1\n  Fibp--OTUD4\n  Mib1--Mib1\n  Mib1--OTUD4\n  Tm1--Tm1\n\nCO-LOCALIZATION INTERACTIONS:\n  Cdk5--Mib1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Mib1--Mib1\n  Mib1--Mib1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  Cdk5--Fibp\n  Csnk2b--Fibp\n  Fibp--Gsk3b\n  Tm1--Tm1\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  OTUD4--OTUD4\n\nNETWORK SUMMARY: 9 proteins, 26 interactions\n\nNew protein to integrate: GstD4\n\nPredict the interactions for GstD4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Fibp--GstD4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Arp5, hh, ptc, rasp, rho, spi\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--rasp\n  ptc--ptc\n  ptc--ptc\n  rho--rho\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--rasp\n  rasp--rho\n  rho--spi\n  rho--spi\n  rho--spi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--ptc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hh--rasp\n  rasp--spi\n  rasp--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n\nNETWORK SUMMARY: 6 proteins, 36 interactions\n\nNew protein to integrate: CG13022\n\nPredict the interactions for CG13022:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13022--rasp"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO1, Mlp84B, Ssl1, ct, mus304\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Ssl1, Mlp84B\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, Mlp84B, Ssl1, ct, mus304\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Ssl1\n  Mlp84B--Ssl1\n  Ssl1--mus304\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Ssl1--ct\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Elp1\n  CG30393--Elp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Dcr-1\n  AGO2--Dcr-2\n  AGO2--Dcr-2\n  AGO2--Elp1\n  Dcr-1--Elp1\n  Dcr-2--Dcr-2\n  Dcr-2--Elp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--rti\n  Elp1--Elp3\n  Elp3--rti\n  rti--rti\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcr-2--roX1\n  Elp1--roX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Elp3--Elp3\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, CG12985, CG30393, CG8368, Dcr-1, Dcr-2, Elp1, Elp3, roX1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Elp1\n  CG30393--Elp1\n  CG8368--Elp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Dcr-1\n  AGO2--Dcr-1\n  AGO2--Dcr-2\n  AGO2--Dcr-2\n  AGO2--Elp1\n  AGO2--Elp1\n  Dcr-1--Elp1\n  Dcr-1--Elp1\n  Dcr-2--Dcr-2\n  Dcr-2--Elp1\n  Dcr-2--Elp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--rti\n  Elp1--Elp3\n  Elp1--rti\n  Elp3--rti\n  rti--rti\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  AGO2--roX1\n  Dcr-2--roX1\n  Elp1--roX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  AGO2--Dcr-2\n  Elp3--Elp3\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Cyp28d1, EDTP, RpL17, RpS23, RpS9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp28d1, EDTP, RpL17, RpS23, RpS9\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n  EDTP--RpL17\n  EDTP--RpS23\n  EDTP--RpS9\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL17--RpS23\n  RpL17--RpS9\n  RpS23--RpS9\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG16947, CG8316, Rcd-1r, Vang, pwn"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16947, CG8316, Rcd-1r, Vang, pwn\n\nTWO-HYBRID INTERACTIONS:\n  CG16947--pwn\n  CG8316--pwn\n  Rcd-1r--pwn\n  Vang--Vang\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Vang--pwn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Vang--Vang\n  Vang--Vang\n  Vang--Vang\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer\n\nTWO-HYBRID INTERACTIONS:\n  CG12379--CG2091\n  CG2091--Hs3st-B\n  CG2091--Rgl\n  CG2091--RpII18\n  CG2091--RpS3A\n  CG2091--homer\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12379, CG2091, Ef1gamma, Hs3st-B, Msp300, Rgl, RpII18, RpS3A, homer\n\nTWO-HYBRID INTERACTIONS:\n  CG12379--CG2091\n  CG2091--Ef1gamma\n  CG2091--Hs3st-B\n  CG2091--Msp300\n  CG2091--Rgl\n  CG2091--RpII18\n  CG2091--RpS3A\n  CG2091--homer\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14957, Hakai, Nha1, upSET\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG14957, Nha1\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14957, Hakai, Nha1, upSET\n\nTWO-HYBRID INTERACTIONS:\n  CG14957--Hakai\n  CG14957--Nha1\n  CG14957--upSET\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Aldh-III, CG11699, CG1746, for\n- Network density: approximately 0.67\n- Hub proteins (highly connected): Aldh-III, CG11699\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aldh-III, CG11699, CG1746, for\n\nTWO-HYBRID INTERACTIONS:\n  Aldh-III--Aldh-III\n  Aldh-III--CG11699\n  CG11699--CG1746\n  CG11699--for\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arf51F, CG5011, RanBP3, rdx\n- Network density: approximately 1.00\n- Hub proteins (highly connected): rdx, RanBP3\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arf51F, CG5011, RanBP3, rdx\n\nTWO-HYBRID INTERACTIONS:\n  Arf51F--RanBP3\n  CG5011--RanBP3\n  RanBP3--rdx\n  RanBP3--rdx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rdx--rdx\n  rdx--rdx\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--CG8184\n  CG10176--Syx7\n  CG10176--egr\n  CG10176--hep\n  CG8184--Traf6\n  Syx7--hep\n  hep--scrib\n  hep--scrib\n  hep--scrib\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  crb--scrib\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10176--Traf6\n  CG10176--egr\n  CG10176--egr\n  Traf6--Traf6\n  scrib--scrib\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10176, CG5676, CG8184, Cpr50Cb, Syx7, Traf6, crb, egr, hep, scrib\n\nTWO-HYBRID INTERACTIONS:\n  CG10176--CG5676\n  CG10176--Cpr50Cb\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10176--CG8184\n  CG10176--Syx7\n  CG10176--crb\n  CG10176--egr\n  CG10176--hep\n  CG10176--scrib\n  CG8184--Traf6\n  CG8184--egr\n  Syx7--hep\n  Traf6--egr\n  Traf6--egr\n  Traf6--egr\n  crb--scrib\n  crb--scrib\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--hep\n  egr--scrib\n  egr--scrib\n  egr--scrib\n  hep--scrib\n  hep--scrib\n  hep--scrib\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  crb--scrib\n  egr--scrib\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10176--Traf6\n  CG10176--egr\n  CG10176--egr\n  Traf6--Traf6\n  scrib--scrib\n\nNETWORK SUMMARY: 10 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG3529, osk\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12024, CG12428, CG3529, CG9795, MED8, NC2alpha, Syx7, Wbp2, jar, osk\n\nTWO-HYBRID INTERACTIONS:\n  CG12428--CG3529\n  CG3529--CG9795\n  CG3529--MED8\n  CG3529--NC2alpha\n  CG3529--Syx7\n  CG3529--Wbp2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12024--CG3529\n  CG3529--jar\n  CG3529--osk\n  MED8--MED8\n  jar--osk\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG3529--jar\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10189, CG7856, CG8078, Nha1, stumps\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--CG7856\n  CG10189--stumps\n  stumps--stumps\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stumps--stumps\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10189, CG7856, CG8078, Nha1, stumps\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--CG7856\n  CG10189--Nha1\n  CG10189--stumps\n  stumps--stumps\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10189--CG8078\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  stumps--stumps\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10396, CG30089, ZnT41F, rti\n- Network density: approximately 0.83\n- Hub proteins (highly connected): CG10396, ZnT41F\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG30089, ZnT41F, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG10396--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10396--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11672, CG13142, CG13171, MAGE, Pk17E"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11672, CG13142, CG13171, MAGE, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG11672--CG13142\n  CG13142--CG13171\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--Pk17E\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: APOB, APP, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n\nTWO-HYBRID INTERACTIONS:\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--APP\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--KPNA2\n  APP--NUDT9\n  APP--SLC2A2\n  APP--TRUB1\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--SLC2A2\n  APP--APP\n  DVL2--DVL2\n  DVL2--SLC2A2\n  NPLOC4--SLC2A2\n  NUDT9--SLC2A2\n  NUDT9--TRUB1\n  SLC2A2--ST3GAL2\n  SLC2A2--TRUB1\n  SLC2A2--TRUB1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  APOB--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 9 proteins, 30 interactions\n\nNew protein to integrate: CAPG\n\nPredict the interactions for CAPG:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CAPG--SLC2A2\n  CAPG--TRUB1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG4661, CG7724, Hsl, heph\n\nTWO-HYBRID INTERACTIONS:\n  CG4661--CG7724\n  CG7724--Hsl\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4661, CG7724, Hsl, heph\n\nTWO-HYBRID INTERACTIONS:\n  CG4661--CG7724\n  CG7724--Hsl\n  CG7724--heph\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Blos2, CG10466, CG3407, CG5280, bin\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG10466\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10466--CG3407\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG10466, CG3407, CG5280, bin\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG10466\n  CG10466--CG5280\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10466--CG3407\n  CG10466--bin\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1\n\nTWO-HYBRID INTERACTIONS:\n  CG5059--CG5059\n  T48--kermit\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  T48--l(2)gd1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  T48--egl\n  egl--egl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1\n\nTWO-HYBRID INTERACTIONS:\n  CG3740--T48\n  CG5059--CG5059\n  CG5059--T48\n  T48--kermit\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  T48--l(2)gd1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  RhoGEF2--T48\n  RhoGEF2--T48\n  egl--egl\n  egl--egl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  T48--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2316, DIP1, Tom20, drm, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2316, DIP1, Tom20, drm, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG2316--drm\n  DIP1--DIP1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG2316--DIP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG2316--Tom20\n  CG2316--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 5 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11560, CG4229, CG7967, RpS7, krz\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG11560, krz\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11560, CG4229, CG7967, RpS7, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG11560--CG11560\n  CG11560--CG4229\n  CG11560--CG7967\n  CG11560--RpS7\n  CG11560--krz\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG13962--CG14354\n  CG14354--CG15638\n  CG14354--CG4229\n  CG14354--CG6520\n  CG14354--CG9986\n  CG14354--Lcp2\n  CG14354--Sgt\n  CG9986--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11454, CG14569, CG14655, CG4622, CG7967, Ire1, Nnf1a, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11454--CG4622\n  CG11454--CG4622\n  CG14569--CG4622\n  CG14655--CG4622\n  CG4622--CG7967\n  CG4622--Ire1\n  CG4622--Nnf1a\n  CG4622--p53\n  CG7967--Nnf1a\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 8 proteins, 12 interactions\n\nNew protein to integrate: Ibf2\n\nPredict the interactions for Ibf2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11454--Ibf2\n  CG4622--Ibf2\n  Ibf2--Ibf2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG34383\n  CG10616--CG4955\n  CG10616--bur\n  CG10616--grp\n  CG10616--par-1\n  CG10616--pie\n  CG10616--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10616--CG16979\n  CG10616--CG3288\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr\n- Network density: approximately 0.43\n- Hub proteins (highly connected): fbl, fu\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--fbl\n  CG1126--fbl\n  Nup153--fbl\n  fbl--fu\n  fbl--tsr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  fbl--prmt1\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--fbl\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dnmt1--fbl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dnmt1--fbl\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG16812--Pih1D1\n  CG16812--fs(2)ltoPP43\n  CG2709--fs(2)ltoPP43\n  CG3281--CG7386\n  CG3281--fs(2)ltoPP43\n  CG45068--fs(2)ltoPP43\n  CG5089--fs(2)ltoPP43\n  DNApol-delta--fs(2)ltoPP43\n  Pih1D1--fs(2)ltoPP43\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG16812--CG16812\n  CG16812--Pih1D1\n  CG16812--fs(2)ltoPP43\n  CG2709--CG2709\n  CG2709--fs(2)ltoPP43\n  CG3281--CG7386\n  CG3281--fs(2)ltoPP43\n  CG45068--fs(2)ltoPP43\n  CG5089--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  DNApol-delta--fs(2)ltoPP43\n  Pih1D1--fs(2)ltoPP43\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10674, CG1544, CG34267, PIG-C, mtd"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10674, CG1544, CG34267, PIG-C, mtd\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG1544\n  CG10674--CG34267\n  CG10674--PIG-C\n  CG10674--mtd\n  CG34267--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  IL1RAPL1--NCS1\n  NCS1--NCS1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NR3C1--NR3C1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--IL1RAPL1\n  IL1RAPL1--NUDCD2\n  NR3C1--NR3C1\n  NUDCD2--NUDCD2\n\nFRET INTERACTIONS:\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n  NCS1--NCS1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IL1RAPL1--NR3C1\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nNETWORK SUMMARY: 6 proteins, 23 interactions\n\nNew protein to integrate: PTPRD\n\nPredict the interactions for PTPRD:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  IL1RAPL1--PTPRD"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl\n- Network density: approximately 0.54\n- Hub proteins (highly connected): FK506-bp1, CG9775\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl\n\nTWO-HYBRID INTERACTIONS:\n  CG9775--Ref1\n  CG9775--Zn72D\n  CG9775--eIF4E-7\n  FK506-bp1--FK506-bp1\n  Ref1--Ref1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6701--CG9775\n  CG6701--Syp\n  CG9775--FK506-bp1\n  CG9775--Syp\n  CG9775--phl\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 8 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG18004--CG3342\n  CG18004--Rad51D\n  CG18004--sinah\n  CG18004--vari\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18004--Hsp23\n  CG18004--Hsp27\n  CG18004--Mocs1\n  CG18004--REG\n  Hsp22--Hsp23\n  Hsp22--Hsp27\n  Hsp23--Hsp27\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG18004, CG3342, Hsp22, Hsp23, Hsp27, Mocs1, REG, Rad51D, sinah, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG18004--CG3342\n  CG18004--Rad51D\n  CG18004--sinah\n  CG18004--vari\n  CG3342--CG3342\n  CG3342--CG3342\n  REG--REG\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18004--Hsp22\n  CG18004--Hsp23\n  CG18004--Hsp27\n  CG18004--Mocs1\n  CG18004--REG\n  Hsp22--Hsp23\n  Hsp22--Hsp27\n  Hsp23--Hsp27\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n  Hsp27--Hsp27\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, kel\n\nTWO-HYBRID INTERACTIONS:\n  CG14868--Ns3\n  CG15152--Ns3\n  CG5537--Ns3\n  Ns3--Pallidin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--Rheb\n  Ns3--Thor\n  Ns3--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Ns3--kel\n  Rheb--Rheb\n  kel--kel\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: gig\n\nPredict the interactions for gig:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--gig\n  Rheb--gig"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG10139--CycG\n  CG10139--Hug\n  CG10139--RpS23\n  CG10139--Src64B\n  CG10139--betaTub56D\n  CG10139--cnn\n  CG10139--prc\n  CG17765--CG17765\n  Src64B--Src64B\n  Src64B--betaTub56D\n  betaTub56D--cnn\n  cnn--cnn\n  cnn--cnn\n  cnn--cnn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  betaTub56D--cnn\n  cnn--cnn\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  cnn--cnn\n  cnn--cnn\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  cnn--cnn\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10527--CG13928\n  CG13321--CG13928\n  CG13928--CG2199\n  CG13928--Obp56d\n  CG13928--imd\n  CG13928--osa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13928--orb2\n  CG13928--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  osa--osa\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13928--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  imd--imd\n\nCO-FRACTIONATION INTERACTIONS:\n  imd--imd\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10527, CG13321, CG13928, CG2199, Dok, Obp56d, imd, orb2, osa, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10527--CG13321\n  CG10527--CG13928\n  CG13321--CG13928\n  CG13928--CG2199\n  CG13928--Dok\n  CG13928--Obp56d\n  CG13928--imd\n  CG13928--osa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13928--orb2\n  CG13928--orb2\n  CG13928--smg\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--smg\n  orb2--smg\n  osa--osa\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13928--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  imd--imd\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nCO-FRACTIONATION INTERACTIONS:\n  imd--imd\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  imd--imd\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic\n\nTWO-HYBRID INTERACTIONS:\n  CG14478--CG5144\n  CG3842--CG5144\n  CG5144--Cyp6a9\n  CG5144--Jheh1\n  CG5144--bab2\n  CG5144--bic\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Aldh-III, CG11699, CG1746, for"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aldh-III, CG11699, CG1746, for\n\nTWO-HYBRID INTERACTIONS:\n  Aldh-III--Aldh-III\n  Aldh-III--CG11699\n  CG11699--CG1746\n  CG11699--for\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11570, CG13993, CG32201, CG9522, magu\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG9522, CG11570\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG13993, CG32201, CG9522, magu\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG13993--CG9522\n  CG32201--CG9522\n  CG9522--magu\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atx-1, CG10348, CG31612, CG4168, CtBP, Rel, gus, tin\n\nTWO-HYBRID INTERACTIONS:\n  Atx-1--CG10348\n  CG10348--CG31612\n  CG10348--CG4168\n  CG10348--CtBP\n  CG10348--Rel\n  CG10348--gus\n  CG10348--tin\n  CG31612--Rel\n  CtBP--CtBP\n  Rel--Rel\n  Rel--tin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CtBP--Rel\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 8 proteins, 16 interactions\n\nNew protein to integrate: CG9902\n\nPredict the interactions for CG9902:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10348--CG9902"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11380, CG5147, CG6569, Sin, Tom20, eco\n- Network density: approximately 0.53\n- Hub proteins (highly connected): CG5147, eco\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11380, CG5147, CG6569, Sin, Tom20, eco\n\nTWO-HYBRID INTERACTIONS:\n  CG11380--CG5147\n  CG5147--CG6569\n  CG5147--Sin\n  CG5147--eco\n\nCO-PURIFICATION INTERACTIONS:\n  eco--eco\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5147--Tom20\n  Tom20--Tom20\n  Tom20--eco\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10222, CG11322, CG2656, CG3704"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG11322, CG2656, CG3704\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG3704\n  CG11322--CG3704\n  CG2656--CG3704\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10344, CG12012, CG1746, Tsp42Eb\n\nTWO-HYBRID INTERACTIONS:\n  CG10344--CG12012\n  CG10344--CG1746\n  CG10344--Tsp42Eb\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG30160\n\nPredict the interactions for CG30160:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10344--CG30160"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n- Network density: approximately 0.40\n- Hub proteins (highly connected): Osi6, E(spl)mdelta-HLH\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cdlc2, Cyp6a22, E(spl)mdelta-HLH, HHEX, Osi6, obst-A\n\nTWO-HYBRID INTERACTIONS:\n  Cdlc2--Osi6\n  Cyp6a22--Osi6\n  E(spl)mdelta-HLH--E(spl)mdelta-HLH\n  E(spl)mdelta-HLH--Osi6\n  HHEX--Osi6\n  Osi6--obst-A\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG2061, CG32694, CG6287, CG9986, Dpy-30L2, RpL7, eIF-3p66\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG2061\n  CG2061--CG32694\n  CG2061--CG6287\n  CG2061--CG9986\n  CG2061--Dpy-30L2\n  CG2061--RpL7\n  CG2061--eIF-3p66\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10032, CG17666, CG9663, opa"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG17666, CG9663, opa\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG9663\n  CG10032--opa\n  CG17666--CG9663\n  CG17666--opa\n  CG9663--opa\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG15443, CG18262, CG6272, Ets65A, Hr78, Rel, Sesn, l(2)k10201\n\nTWO-HYBRID INTERACTIONS:\n  C15--Hr78\n  C15--l(2)k10201\n  CG15443--l(2)k10201\n  CG18262--l(2)k10201\n  CG6272--Hr78\n  CG6272--l(2)k10201\n  Ets65A--l(2)k10201\n  Hr78--Rel\n  Hr78--l(2)k10201\n  Rel--Rel\n  Rel--l(2)k10201\n  Sesn--l(2)k10201\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5151, CG8191, CycG, mei-S332"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5151, CG8191, CycG, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  CG5151--CG8191\n  CG5151--CycG\n  CG5151--mei-S332\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C15, CG12182, CG18563, CG4328, CG6688, CG8907, Cpr67Fa2, D, prt\n\nTWO-HYBRID INTERACTIONS:\n  C15--Cpr67Fa2\n  CG12182--Cpr67Fa2\n  CG18563--Cpr67Fa2\n  CG4328--Cpr67Fa2\n  CG6688--Cpr67Fa2\n  CG8907--Cpr67Fa2\n  Cpr67Fa2--D\n  Cpr67Fa2--prt\n  D--D\n  D--D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  D--D\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG13843\n\nPredict the interactions for CG13843:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13843--CG13843\n  CG13843--Cpr67Fa2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14957, Hakai, Nha1, upSET"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14957, Hakai, Nha1, upSET\n\nTWO-HYBRID INTERACTIONS:\n  CG14957--Hakai\n  CG14957--Nha1\n  CG14957--upSET\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG11409--CG34411\n  CG11409--Obp56a\n  CG11409--isopeptidase-T-3\n  CG11409--spict\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG1486--CG4116\n  CG1486--CG7712\n  CG1486--H2.0\n  CG1486--elfless\n  CG1486--sty\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty\n\nTWO-HYBRID INTERACTIONS:\n  Abd-B--CG1486\n  CG10252--CG1486\n  CG1486--CG15712\n  CG1486--CG4116\n  CG1486--CG7712\n  CG1486--H2.0\n  CG1486--ci\n  CG1486--elfless\n  CG1486--sty\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG15067--Eip55E\n  Dcp1--Eip55E\n  Eip55E--Tango2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG34133--Eip55E\n  Eip55E--Prx2540-2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcp-1--Eip55E\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcp-1--Eip55E\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG8187, RpL10\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68\n\nTWO-HYBRID INTERACTIONS:\n  CG1092--CG8187\n  CG11267--CG8187\n  CG18815--CG8187\n  CG8187--RpL10\n  CG8187--RpL37a\n  CG8187--mei-W68\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL10--RpL37a\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15365, CG6287, CG7387, CHORD, Cctgamma, Cyp4p1, E(var)3-9, Ssk, p53, pn\n\nTWO-HYBRID INTERACTIONS:\n  CG15365--CG7387\n  CG6287--CG7387\n  CG7387--CHORD\n  CG7387--Cctgamma\n  CG7387--Cyp4p1\n  CG7387--E(var)3-9\n  CG7387--Ssk\n  CG7387--pn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7387--p53\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--eIF2B-delta\n  ci--ci\n  ci--eIF2B-delta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-delta--skpC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  eIF2B-delta--ird5\n  ird5--ird5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Trf2--eIF2B-delta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy\n\nTWO-HYBRID INTERACTIONS:\n  CG11448--CG8145\n  CG11448--CG8145\n  CG13775--CG13775\n  CG13775--CG8145\n  CG31224--CG8145\n  CG34334--CG8145\n  CG8145--CG9902\n  CG8145--HLH4C\n  CG8145--Moe\n  CG8145--Rel\n  CG8145--toy\n  CG9902--toy\n  Moe--Moe\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12728, CG32756, dgrn\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG4218\n\nPredict the interactions for CG4218:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12728--CG4218\n  CG32756--CG4218\n  CG4218--dgrn"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11151, CG7950, Pex5\n\nTWO-HYBRID INTERACTIONS:\n  CG11151--CG7950\n  CG11151--Pex5\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: alpha-Est7\n\nPredict the interactions for alpha-Est7:"
-      },
-      {
-        "role": "assistant",
-        "content": "PCA INTERACTIONS:\n  CG11151--alpha-Est7\n  alpha-Est7--alpha-Est7"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb\n- Network density: approximately 0.28\n- Hub proteins (highly connected): CG7182, Pak\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG7182\n  CG7182--CG7191\n  CG7182--Pak\n  CG7182--Tep4\n  CG7182--Uba2\n  CG7182--mad2\n  CG7182--tomb\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7182--rti\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG31038, CG9902, EndoGI, lig3\n\nNETWORK SUMMARY: 4 proteins, 0 interactions\n\nNew protein to integrate: CG10157\n\nPredict the interactions for CG10157:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10157--CG31038\n  CG10157--CG9902\n  CG10157--EndoGI\n  CG10157--lig3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n\nTWO-HYBRID INTERACTIONS:\n  C15--Tango10\n  CG1041--Tango10\n  CG10979--Tango10\n  Cpr64Ad--Tango10\n  Fer3HCH--Fer3HCH\n  Fer3HCH--Tango10\n  Su(var)2-10--Tango10\n  Su(var)2-10--spn-A\n  Tango10--cup\n  Tango10--spn-A\n  Tango10--vari\n  spn-A--spn-A\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG11486\n  Bap60--CG8907\n  Bap60--eIF4E-3\n  CG13510--eIF4E-3\n  CG8907--eIF4E-3\n  Thor--eIF4E-3\n  TwdlE--eIF4E-3\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--mxt\n  eIF4E-3--mxt\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG11486, CG13510, CG8907, Thor, TwdlE, eIF4E-3, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG11486\n  Bap60--CG8907\n  Bap60--eIF4E-3\n  CG11486--eIF4E-3\n  CG11486--eIF4E-3\n  CG13510--eIF4E-3\n  CG8907--eIF4E-3\n  Thor--eIF4E-3\n  TwdlE--eIF4E-3\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--mxt\n  eIF4E-3--mxt\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--eIF4G2\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13138, CG14053, CG32221, CG33017, CG4221, CG9316, PCNA, Rca1, ntc, skpF\n\nTWO-HYBRID INTERACTIONS:\n  CG13138--CG13138\n  CG13138--skpF\n  CG14053--CG33017\n  CG14053--CG9316\n  CG14053--skpF\n  CG33017--skpF\n  CG4221--skpF\n  CG9316--skpF\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--skpF\n  Rca1--skpF\n  ntc--skpF\n\nCO-PURIFICATION INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n  PCNA--PCNA\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG32221--skpF\n  PCNA--PCNA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  PCNA--PCNA\n  PCNA--PCNA\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10298, hdm, mei-217, rec\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--rec\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hdm--rec\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-217--rec\n  mei-217--rec\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: spn-A\n\nPredict the interactions for spn-A:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  spn-A--spn-A\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rec--spn-A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1\n- Network density: approximately 0.73\n- Hub proteins (highly connected): FK506-bp1, CG1142\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG14490, CG3303, CG42797, CG8079, FK506-bp1\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG14490\n  CG1142--CG3303\n  CG1142--CG42797\n  CG1142--CG8079\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1142--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10157, CG31038, CG9902, EndoGI, lig3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10157, CG31038, CG9902, EndoGI, lig3\n\nTWO-HYBRID INTERACTIONS:\n  CG10157--CG31038\n  CG10157--CG9902\n  CG10157--EndoGI\n  CG10157--lig3\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx\n\nTWO-HYBRID INTERACTIONS:\n  CCAP-R--CG1314\n  CG10301--CG1314\n  CG1314--CG15576\n  CG1314--CG15631\n  CG1314--CG6770\n  CG1314--CG9222\n  CG1314--Hakai\n  CG1314--RpS28b\n  CG1314--dx\n  dx--dx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dx--dx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10032, CG10205, CG17019, rdgA, srl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10032, CG10205, CG17019, rdgA, srl\n\nTWO-HYBRID INTERACTIONS:\n  CG10032--CG17019\n  CG10205--CG17019\n  CG17019--rdgA\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG17019--srl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG17019--srl\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10396, CG30089, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10396--rti\n  rti--rti\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: ZnT41F\n\nPredict the interactions for ZnT41F:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10396--ZnT41F\n  ZnT41F--ZnT41F"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10911, CG2982, CG42336, Pex23\n\nTWO-HYBRID INTERACTIONS:\n  CG10911--CG42336\n  CG2982--CG42336\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10911, CG2982, CG42336, Pex23\n\nTWO-HYBRID INTERACTIONS:\n  CG10911--CG42336\n  CG2982--CG42336\n  CG42336--Pex23\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10396, CG30089, janA, mus101, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG30089--janA\n  CG30089--mus101\n  CG30089--yki\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: CG11134\n\nPredict the interactions for CG11134:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--yki"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: C15, CG1041, CG10979, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n\nTWO-HYBRID INTERACTIONS:\n  C15--Tango10\n  CG1041--Tango10\n  CG10979--Tango10\n  Fer3HCH--Fer3HCH\n  Fer3HCH--Tango10\n  Su(var)2-10--Tango10\n  Su(var)2-10--spn-A\n  Tango10--cup\n  Tango10--spn-A\n  Tango10--vari\n  spn-A--spn-A\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: Cpr64Ad\n\nPredict the interactions for Cpr64Ad:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cpr64Ad--Tango10"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C\n\nTWO-HYBRID INTERACTIONS:\n  CG13822--CG14317\n  CG13822--TFAM\n  CG13822--ago\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C\n\nTWO-HYBRID INTERACTIONS:\n  CG13822--CG14317\n  CG13822--Rca1\n  CG13822--TFAM\n  CG13822--ago\n  CG13822--gammaTub37C\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol\n\nTWO-HYBRID INTERACTIONS:\n  Bx42--CG3630\n  CG10752--CG3630\n  CG14422--CG3630\n  CG3630--Ef1gamma\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--Cam\n  CG3630--Ntf-2\n  CG3630--smt3\n  Ntf-2--Sod\n  Ntf-2--smt3\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx42, CG10752, CG14422, CG3630, Cam, Ef1gamma, Ntf-2, Sod, smt3, sol\n\nTWO-HYBRID INTERACTIONS:\n  Bx42--CG3630\n  CG10752--CG3630\n  CG14422--CG3630\n  CG3630--Ef1gamma\n  CG3630--sol\n  Ntf-2--Ntf-2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3630--Cam\n  CG3630--Ntf-2\n  CG3630--Sod\n  CG3630--smt3\n  Ntf-2--Sod\n  Ntf-2--smt3\n  Sod--smt3\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG18624\n  CG10559--Ef1alpha48D\n  CG10559--Indy\n  CG10559--LpR1\n  CG10559--NimC1\n  CG10559--gb\n\nNETWORK SUMMARY: 10 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG13427, CG1690, CG18624, Ef1alpha48D, Indy, LpR1, NimC1, cold, gb\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG13427\n  CG10559--CG1690\n  CG10559--CG18624\n  CG10559--Ef1alpha48D\n  CG10559--Indy\n  CG10559--LpR1\n  CG10559--NimC1\n  CG10559--cold\n  CG10559--gb\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG10959, Eb1\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG12470\n  CG10959--CG13151\n  CG10959--Eb1\n  CG10959--Ets65A\n  CG10959--GATAe\n  CG10959--Gprk1\n  CG10959--RpS30\n  CG10959--Spt6\n  Eb1--Eb1\n  Eb1--Eb1\n\nPCA INTERACTIONS:\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10959--CG16865\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11286, CG31365, CG5466, HLH3B, Leash, Mad, RtGEF, fws, gukh, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11286--fws\n  CG31365--CG31365\n  CG31365--fws\n  CG5466--fws\n  HLH3B--fws\n  Leash--Leash\n  Leash--fws\n  Mad--Mad\n  Mad--fws\n  RtGEF--fws\n  fws--gukh\n  fws--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mad--Mad\n  Mad--Mad\n  fws--rti\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Mad--Mad\n\nCO-FRACTIONATION INTERACTIONS:\n  Mad--Mad\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--alphaKap4\n  SmE--alphaKap4\n  alphaKap4--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaKap4--scra\n\nNETWORK SUMMARY: 7 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3876, CG7208, Mob2, SmE, alphaKap4, nop5, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG3876--alphaKap4\n  CG7208--alphaKap4\n  Mob2--alphaKap4\n  SmE--alphaKap4\n  alphaKap4--nop5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaKap4--scra\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11722, RtGEF\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG11722--Elba3\n  CG11722--MRG15\n  CG11722--RtGEF\n  CG11722--betaggt-II\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B\n\nTWO-HYBRID INTERACTIONS:\n  CG10418--LSm1\n  CG6610--LSm7\n  Hil--LSm1\n  LSm1--Prosbeta5\n  LSm1--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10418--CG6610\n  CG6610--LSm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm-4--LSm1\n  LSm-4--LSm1\n  LSm1--LSm7\n  LSm1--LSm7\n  LSm1--Patr-1\n  LSm1--Patr-1\n  LSm1--me31B\n  LSm7--Patr-1\n  LSm7--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Patr-1--me31B\n  me31B--me31B\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14210, Lin29, Patronin, RpLP1\n\nTWO-HYBRID INTERACTIONS:\n  CG14210--Lin29\n  CG14210--Patronin\n  CG14210--RpLP1\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: CG10749\n\nPredict the interactions for CG10749:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10749--CG14210"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14968, CG16817, Chd64, Cht9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14968, CG16817, Chd64, Cht9\n\nTWO-HYBRID INTERACTIONS:\n  CG14968--Cht9\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14968--CG16817\n  CG14968--Chd64\n  CG16817--Chd64\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG4661, CG7724, Hsl, heph"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4661, CG7724, Hsl, heph\n\nTWO-HYBRID INTERACTIONS:\n  CG4661--CG7724\n  CG7724--Hsl\n  CG7724--heph\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG11722--Elba3\n  CG11722--RtGEF\n  CG11722--betaggt-II\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, Eip55E, Elba3, MRG15, RtGEF, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG11722--Elba3\n  CG11722--MRG15\n  CG11722--RtGEF\n  CG11722--betaggt-II\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CAP, CG10440, CG14074, CG2611, Doc3, PICK1, TfAP-2, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CAP--CG10440\n  CG10440--CG10440\n  CG10440--CG14074\n  CG10440--PICK1\n  CG10440--TfAP-2\n  CG10440--lwr\n  CG10440--lwr\n  CG14074--CG14074\n  CG14074--lwr\n  PICK1--PICK1\n  lwr--lwr\n  lwr--lwr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10440--TfAP-2\n  CG10440--TfAP-2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAP--CAP\n  PICK1--PICK1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10440--CG2611\n  CG10440--Doc3\n\nNETWORK SUMMARY: 8 proteins, 18 interactions\n\nNew protein to integrate: CG32354\n\nPredict the interactions for CG32354:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10440--CG32354"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle\n- Network density: approximately 0.78\n- Hub proteins (highly connected): CTCF, CG7928\n- Total interactions: approximately 28"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12620, CG16812, CG2926, CG3338, CG7928, CTCF, Moe, eIF4E-7, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG12620--CG16812\n  CG16812--CG16812\n  CG16812--CG2926\n  CG16812--CG3338\n  CG16812--CG7928\n  CG16812--CTCF\n  CG16812--Moe\n  CG16812--eIF4E-7\n  CG16812--mle\n  CG2926--Moe\n  CG7928--CG7928\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n  CTCF--CTCF\n  Moe--Moe\n  mle--mle\n\nCO-FRACTIONATION INTERACTIONS:\n  CTCF--CTCF\n  CTCF--CTCF\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  CTCF--CTCF\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CTCF--CTCF\n\nPCA INTERACTIONS:\n  CG7928--CG7928\n  CTCF--CTCF\n\nNETWORK SUMMARY: 9 proteins, 28 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  FGF7--HSPG2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--FGFR2\n  FGF7--Fgfr2\n  FGF7--PTX3\n  FGFR2--FGFR2\n\nTWO-HYBRID INTERACTIONS:\n  FGF7--UBQLN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DESI1--UBQLN1\n  UBQLN1--UBQLN1\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DESI1, FGF7, FGFR2, Fgfr2, HSPG2, PTX3, UBQLN1\n\nTWO-HYBRID INTERACTIONS:\n  DESI1--FGF7\n  DESI1--UBQLN1\n  FGF7--HSPG2\n  FGF7--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FGFR2--FGFR2\n  FGFR2--FGFR2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--Fgfr2\n  FGF7--HSPG2\n  FGF7--PTX3\n  FGFR2--FGFR2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  FGF7--HSPG2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DESI1--UBQLN1\n  UBQLN1--UBQLN1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG7492--PHDP\n  CG7492--kermit\n  Nsf2--Nsf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1532--CG7492\n  CG1532--CG7737\n  CG1532--Got1\n  CG1532--HIP-R\n  CG1532--Sod\n  CG7492--CG7737\n  CG7492--Got1\n  CG7492--HIP-R\n  CG7492--Sod\n  CG7737--HIP-R\n  CG7737--Sod\n  Got1--Sod\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7492--Nsf2\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10205, CG10362, CG17019, CG6357"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10205, CG10362, CG17019, CG6357\n\nTWO-HYBRID INTERACTIONS:\n  CG10205--CG10362\n  CG10205--CG17019\n  CG10205--CG6357\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG11417--RpS11\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Pi3K21B\n  CG11417--Rtnl1\n  CG11417--Rtnl1\n  CG11417--Tsc1\n  CG11417--dos\n  CG11417--gig\n  CG11417--phl\n  CG11417--rictor\n  RpS11--Tsc1\n  RpS11--gig\n  Rtnl1--Rtnl1\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11417--kel\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n\nTWO-HYBRID INTERACTIONS:\n  CG13133--CG13133\n  CG13133--CG13667\n  CG13133--CG14317\n  CG13133--CG34198\n  CG13133--Droj2\n  CG13133--Mst84Db\n  CG13133--Mst84Dd\n  CG13133--Rca1\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13133, CG13667, CG14317, CG34198, Droj2, Mst84Db, Mst84Dd, Mst87F, Rca1, metl\n\nTWO-HYBRID INTERACTIONS:\n  CG13133--CG13133\n  CG13133--CG13667\n  CG13133--CG13667\n  CG13133--CG14317\n  CG13133--CG34198\n  CG13133--Droj2\n  CG13133--Mst84Db\n  CG13133--Mst84Dd\n  CG13133--Mst87F\n  CG13133--Rca1\n  CG13133--metl\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5274, CycK, IntS10, L, cup, gro\n- Network density: approximately 0.80\n- Hub proteins (highly connected): gro, CG5274\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5274, CycK, IntS10, L, cup, gro\n\nTWO-HYBRID INTERACTIONS:\n  CG5274--CycK\n  CG5274--IntS10\n  CG5274--L\n  CG5274--cup\n  CG5274--gro\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n\nNETWORK SUMMARY: 6 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG1126, Nup153, dnmt1, fbl, fu, prmt1, tsr\n\nTWO-HYBRID INTERACTIONS:\n  CG1126--fbl\n  CG1126--fbl\n  Nup153--fbl\n  fbl--fu\n  fbl--tsr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  fbl--prmt1\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--fbl\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dnmt1--fbl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dnmt1--fbl\n\nNETWORK SUMMARY: 8 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11269, CG12290, CG13272, CG14232, CG17985, CG9514, Vha16-2, Vha16-4, oc\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG12290\n  CG11269--CG13272\n  CG11269--CG14232\n  CG11269--CG17985\n  CG11269--CG9514\n  CG11269--Vha16-2\n  CG11269--Vha16-4\n  CG11269--oc\n\nNETWORK SUMMARY: 9 proteins, 8 interactions\n\nNew protein to integrate: CG6337\n\nPredict the interactions for CG6337:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11269--CG6337"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--CG4853\n  Axud1--Prpk\n  Axud1--Spt5\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Axud1--Dcr-2\n  Axud1--puc\n  hep--puc\n  hep--puc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--bsk\n  Axud1--hep\n  bsk--puc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-2--Dcr-2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--CG4853\n  Axud1--Pp1alpha-96A\n  Axud1--Prpk\n  Axud1--Spt5\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Axud1--Dcr-2\n  Axud1--puc\n  hep--puc\n  hep--puc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--bsk\n  Axud1--cdc2\n  Axud1--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-2--Dcr-2\n  bsk--hep\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w\n- Network density: approximately 0.24\n- Hub proteins (highly connected): cm, Blos1\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos1, CG31036, CG4554, Or98b, Slip1, Taf6, Treh, Usf, cm, w\n\nTWO-HYBRID INTERACTIONS:\n  CG31036--cm\n  CG4554--cm\n  Or98b--cm\n  Slip1--cm\n  Taf6--cm\n  Treh--cm\n  Usf--cm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Blos1--cm\n  Blos1--cm\n  cm--w\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Blos1--w\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--bur\n  CG10616--grp\n  CG10616--par-1\n  CG10616--pie\n  CG10616--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10616--CG16979\n  CG10616--CG3288\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10616, CG16979, CG3288, CG34383, CG4955, bur, grp, par-1, pie, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG34383\n  CG10616--CG4955\n  CG10616--bur\n  CG10616--grp\n  CG10616--par-1\n  CG10616--pie\n  CG10616--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10616--CG16979\n  CG10616--CG3288\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG9426, HipHop, Spred, grp, ms(3)K81\n- Network density: approximately 0.70\n- Hub proteins (highly connected): ms(3)K81, CG9426\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9426, HipHop, Spred, grp, ms(3)K81\n\nTWO-HYBRID INTERACTIONS:\n  CG9426--CG9426\n  CG9426--ms(3)K81\n  Spred--ms(3)K81\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  HipHop--ms(3)K81\n  HipHop--ms(3)K81\n  grp--ms(3)K81\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10616, CG16979, CG3288, CG34383, bur, grp, par-1, pie, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10616--CG34383\n  CG10616--bur\n  CG10616--grp\n  CG10616--par-1\n  CG10616--pie\n  CG10616--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10616--CG16979\n  CG10616--CG3288\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG4955\n\nPredict the interactions for CG4955:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10616--CG4955"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Akh, CG13689, CG13733, CG34117, CG6769, Dl, LKR, Moca-cyp, ste14\n\nTWO-HYBRID INTERACTIONS:\n  Akh--CG13689\n  CG13689--CG13733\n  CG13689--CG34117\n  CG13689--CG6769\n  CG13689--Dl\n  CG13689--LKR\n  CG13689--Moca-cyp\n  CG13689--ste14\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dl--Dl\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: 4E-T\n\nPredict the interactions for 4E-T:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  4E-T--4E-T\n  4E-T--CG13689"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Drep-1--SpdS\n  Rtnl1--Rtnl1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nTWO-HYBRID INTERACTIONS:\n  CG14207--Drep-1\n  Rtnl1--Rtnl1\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-gln--SpdS\n  CG14207--Drep-1\n  CG14207--SpdS\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Drep-1--SpdS\n  Rtnl1--Rtnl1\n  Rtnl1--SpdS\n  Rtnl1--SpdS\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1635, CG1638, CG31961, CG7878, Vps37B\n\nTWO-HYBRID INTERACTIONS:\n  CG1638--CG31961\n  CG1638--CG7878\n  CG1638--Vps37B\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, CG1638, CG31961, CG7878, Vps37B\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--CG1638\n  CG1638--CG31961\n  CG1638--CG7878\n  CG1638--Vps37B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6656, Cyp28d1, Cyp28d2, EDTP, cry\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d2\n  Cyp28d1--Cyp28d2\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Cyp28d1--cry\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6656, Cyp28d1, Cyp28d2, EDTP, cry\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d1\n  CG6656--Cyp28d2\n  Cyp28d1--Cyp28d2\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Cyp28d1--cry\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Myo10A, Neto\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--Fip1\n  CG13871--Fip1\n  CG9975--Fip1\n  Clp--Fip1\n  Fip1--Myo10A\n  Fip1--Myo10A\n  Fip1--Neto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fip1--Myo10A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Clp--CstF-64\n  CstF-64--Fip1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10144, Dcp1, Rab5, Vps16A, dor, lt\n\nTWO-HYBRID INTERACTIONS:\n  CG10144--Dcp1\n  CG10144--dor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10144--lt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--Rab5\n  CG10144--Vps16A\n  CG10144--dor\n  Rab5--Vps16A\n  Rab5--dor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--Vps16A\n  CG10144--dor\n  Dcp1--Dcp1\n  Vps16A--lt\n  dor--lt\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 6 proteins, 15 interactions\n\nNew protein to integrate: car\n\nPredict the interactions for car:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--car\n  car--dor\n  car--dor\n  car--lt\n\nCO-FRACTIONATION INTERACTIONS:\n  car--dor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--car\n  Rab5--car"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10424, Dcp1, rti\n- Network density: approximately 2.33\n- Hub proteins (highly connected): Dcp1, CG10424\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10424, Dcp1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10424--CG10424\n  CG10424--Dcp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10424--rti\n  rti--rti\n\nNETWORK SUMMARY: 3 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--sa\n  CG30417--sa\n  CG30417--tbrd-1\n  CG30417--tbrd-1\n  Taf10b--sa\n  ZAP3--sa\n  sa--tbrd-1\n  tbrd-1--tbrd-1\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pp4-19C--sa\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Act5C, CG14579, Rab11, Rab4, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG14579--spir\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Act5C--spir\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Act5C--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14579--Rab11\n  CG14579--Rab11\n  CG14579--Rab4\n  Rab11--Rab4\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, CG14579, Rab11, Rab4, spir\n\nTWO-HYBRID INTERACTIONS:\n  CG14579--spir\n\nCO-FRACTIONATION INTERACTIONS:\n  Act5C--spir\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Act5C--spir\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Act5C--spir\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Act5C--CG14579\n  Act5C--Rab11\n  CG14579--Rab11\n  CG14579--Rab11\n  CG14579--Rab4\n  Rab11--Rab4\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG3353, CG3919\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13114, CG3353, CG3919, Fancd2, Hel25E, Mlf, NFAT, RpL40, cindr, esn\n\nTWO-HYBRID INTERACTIONS:\n  CG13114--CG3353\n  CG3353--CG3919\n  CG3353--Fancd2\n  CG3353--Hel25E\n  CG3353--Mlf\n  CG3353--NFAT\n  CG3353--RpL40\n  CG3353--cindr\n  CG3353--esn\n  CG3919--CG3919\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Fancd2--Fancd2\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra\n\nTWO-HYBRID INTERACTIONS:\n  Cas--Cpn\n  Cas--Pen\n  Cas--Vsx2\n  Cas--nocte\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cas--scra\n  Pen--scra\n  fra--fra\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6707, Cas, Cpn, Hakai, Pen, Vsx2, dsx, fra, nocte, scra\n\nTWO-HYBRID INTERACTIONS:\n  CG6707--Cas\n  Cas--Cpn\n  Cas--Hakai\n  Cas--Pen\n  Cas--Vsx2\n  Cas--dsx\n  Cas--nocte\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cas--scra\n  Pen--scra\n  fra--fra\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cas--fra\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11762, CG15042, Gp150, Nup98-96, spo, spok\n- Network density: approximately 0.33\n- Hub proteins (highly connected): spo, Nup98-96\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11762, CG15042, Gp150, Nup98-96, spo, spok\n\nTWO-HYBRID INTERACTIONS:\n  CG15042--spo\n  Gp150--spo\n  Nup98-96--spo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG11762--spo\n  spo--spok\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10483, CG12470, Cka, Mob4\n\nTWO-HYBRID INTERACTIONS:\n  CG10483--CG12470\n  CG10483--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n  Cka--Mob4\n  Cka--Mob4\n\nNETWORK SUMMARY: 4 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10483, CG12470, Cka, Mob4\n\nTWO-HYBRID INTERACTIONS:\n  CG10483--CG12470\n  CG10483--Cka\n  CG10483--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n  Cka--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cka--Mob4\n  Cka--Mob4\n\nNETWORK SUMMARY: 4 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10869, CoVa, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--CoVa\n  CG10869--nonA-l\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG9986\n\nPredict the interactions for CG9986:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10869--CG9986"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12985, Foxp3, Recql, Rrp7a, Sirt7, Vap-33B, Zfp512, ergic53, polo, rhea\n\nTWO-HYBRID INTERACTIONS:\n  CG12985--CG12985\n  CG12985--Sirt7\n  Sirt7--Vap-33B\n  Sirt7--ergic53\n  Sirt7--polo\n  Sirt7--rhea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Foxp3--Sirt7\n  Foxp3--Zfp512\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  Recql--Sirt7\n  Rrp7a--Sirt7\n  Sirt7--Zfp512\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG13458--CG31121\n  CG31121--CG5522\n  CG31121--Hsc70-5\n  CG31121--RpL14\n  CG31121--nito\n  CG5522--aru\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG13458--CG31121\n  CG13458--nito\n  CG31121--CG5522\n  CG31121--Cfp1\n  CG31121--Hsc70-5\n  CG31121--RpL14\n  CG31121--aru\n  CG31121--nito\n  CG5522--aru\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  betaggt-II--nst\n  eIF-4a--nst\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--eIF-4a\n  Akt1--nst\n  Rtnl1--Rtnl1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nst--sxc\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  Rtnl1--Rtnl1\n  beta-Spec--nst\n  betaggt-II--nst\n  eIF-4a--nst\n  nst--step\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--eIF-4a\n  Akt1--nst\n  Rtnl1--Rtnl1\n  Rtnl1--nst\n  Rtnl1--nst\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nst--sxc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  htl--nst\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG5343, CG9902, Galt, TTLL3B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5343, CG9902, Galt, TTLL3B\n\nTWO-HYBRID INTERACTIONS:\n  CG9902--TTLL3B\n  Galt--TTLL3B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG5343--TTLL3B\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns\n\nTWO-HYBRID INTERACTIONS:\n  CG12020--Mdr65\n  CG4328--Mdr65\n  Mdr65--Neto\n  Mdr65--RpS11\n  Mdr65--Ubqn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--eas\n  Mdr65--para\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sns--sns\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns\n\nTWO-HYBRID INTERACTIONS:\n  CG12020--Mdr65\n  CG12470--Mdr65\n  CG12470--Neto\n  CG4328--Mdr65\n  Mdr65--Neto\n  Mdr65--RpS11\n  Mdr65--Ubqn\n  Mdr65--sns\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--eas\n  Mdr65--para\n  eas--para\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sns--sns\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11455, CG14478, CG6195, dl\n\nTWO-HYBRID INTERACTIONS:\n  CG11455--CG14478\n  CG11455--CG6195\n  CG11455--dl\n  dl--dl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 4 proteins, 8 interactions\n\nNew protein to integrate: CG14044\n\nPredict the interactions for CG14044:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG11455--CG14044"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10189, CG14957, CG5478, CG6443, Nha1, Nha2, cactin\n\nTWO-HYBRID INTERACTIONS:\n  CG10189--Nha1\n  CG14957--Nha1\n  CG5478--Nha1\n  CG6443--Nha1\n  Nha1--cactin\n  Nha2--Nha2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nha1--Nha2\n  Nha1--Nha2\n\nNETWORK SUMMARY: 7 proteins, 8 interactions\n\nNew protein to integrate: CG3309\n\nPredict the interactions for CG3309:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG3309--Nha1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff\n- Network density: approximately 0.25\n- Hub proteins (highly connected): CG11982, AGO1\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG10918, CG11982, CG3473, CG7220, CG7546, UbcD2, ben, eff\n\nTWO-HYBRID INTERACTIONS:\n  CG10918--CG11982\n  CG11982--CG3473\n  CG11982--CG7220\n  CG11982--UbcD2\n  CG11982--ben\n  CG11982--eff\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO1--CG11982\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO1--CG11982\n  CG11982--CG7546\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, Evi5\n\nTWO-HYBRID INTERACTIONS:\n  CG10466--CG5280\n  CG12496--CG5280\n  CG12496--CG7352\n  CG13032--CG5280\n  CG15646--CG5280\n  CG18619--CG5280\n  CG5062--CG5280\n  CG5280--CG7352\n  CG5280--Evi5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG8301\n\nPredict the interactions for CG8301:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5280--CG8301"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Df31\n  CG10214--Hsp60\n  CG10214--Sod\n  CG10214--baf\n  CG10214--mtSSB\n  CG10214--p38b\n  Df31--Hsp60\n  Df31--Sod\n  Sod--mtSSB\n\nTWO-HYBRID INTERACTIONS:\n  Ote--baf\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG7222, Df31, Hsp60, Ote, Sod, baf, mtSSB, p38b, p38c\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  Ote--baf\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10214--Df31\n  CG10214--Hsp60\n  CG10214--Ote\n  CG10214--Sod\n  CG10214--baf\n  CG10214--mtSSB\n  CG10214--p38b\n  CG10214--p38c\n  Df31--Hsp60\n  Df31--Sod\n  Sod--mtSSB\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11266, CG4116, CG8273, Rga, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG8273\n  CG4116--CG8273\n  CG4116--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  loqs--loqs\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG8273--Rga\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG4116, CG8273, Rga, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG8273\n  CG4116--CG8273\n  CG4116--loqs\n  CG8273--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  loqs--loqs\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG8273--Rga\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bsg, CG11269, CG11404, Desi, SsRbeta\n\nTWO-HYBRID INTERACTIONS:\n  Bsg--CG11404\n  CG11269--CG11404\n  CG11404--Desi\n  CG11404--SsRbeta\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: CG1275\n\nPredict the interactions for CG1275:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11404--CG1275"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11456, CG13005, CG4854, CG6276, CG6654, Jon65Aiv, Sox21b, TpnC41C\n\nTWO-HYBRID INTERACTIONS:\n  CG11456--CG13005\n  CG11456--CG4854\n  CG11456--CG6276\n  CG11456--CG6654\n  CG11456--Jon65Aiv\n  CG11456--Sox21b\n  CG11456--TpnC41C\n  CG4854--CG4854\n  CG4854--Sox21b\n\nNETWORK SUMMARY: 8 proteins, 9 interactions\n\nNew protein to integrate: Hr78\n\nPredict the interactions for Hr78:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11456--Hr78\n  Hr78--Sox21b"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12081, Ntf-2, Scm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Scm--Scm\n  Scm--Scm\n\nTWO-HYBRID INTERACTIONS:\n  Ntf-2--Ntf-2\n  Scm--Scm\n  Scm--Scm\n\nNETWORK SUMMARY: 3 proteins, 5 interactions\n\nNew protein to integrate: Ntf-2r\n\nPredict the interactions for Ntf-2r:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12081--Ntf-2r\n  Ntf-2--Ntf-2r\n  Ntf-2r--Scm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10570, CG1461, CG9578, Cpr73D\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG10570--CG9578\n  CG10570--Cpr73D\n  CG1461--CG1461\n  CG9578--CG9578\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: Vmat\n\nPredict the interactions for Vmat:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10570--Vmat"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG42388, CG6950, Cyp6a19, Or59c, Rack1, RpLP1, Sxl, Tom20, Tom7\n\nTWO-HYBRID INTERACTIONS:\n  CG42388--CG6950\n  CG6950--Cyp6a19\n  CG6950--Or59c\n  CG6950--Rack1\n  CG6950--RpLP1\n  CG6950--Sxl\n  CG6950--Tom7\n  Rack1--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nPCA INTERACTIONS:\n  CG42388--CG42388\n\nCO-FRACTIONATION INTERACTIONS:\n  Rack1--RpLP1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG6950--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 20 interactions\n\nNew protein to integrate: CG11148\n\nPredict the interactions for CG11148:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11148--CG6950"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7\n- Network density: approximately 0.71\n- Hub proteins (highly connected): CG10824, CG11320\n- Total interactions: approximately 32"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10824, CG11320, CG1943, bdg, dpr, dpr2, dpr3, dpr4, dpr5, dpr7\n\nTWO-HYBRID INTERACTIONS:\n  CG11320--CG1943\n  CG11320--bdg\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10824--CG11320\n  CG10824--CG11320\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr2\n  CG10824--dpr4\n  CG10824--dpr4\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr5\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG10824--dpr7\n  CG11320--dpr\n  CG11320--dpr\n  dpr3--dpr7\n  dpr3--dpr7\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CG11320--dpr\n  CG11320--dpr2\n  CG11320--dpr3\n  CG11320--dpr4\n  CG11320--dpr5\n  CG11320--dpr7\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet1, CG11438, CG13920, CG33333, CG43129, CG5104, CG8668, Cys, Rh50, ng2\n\nTWO-HYBRID INTERACTIONS:\n  Bet1--CG11438\n  CG11438--CG13920\n  CG11438--CG33333\n  CG11438--CG43129\n  CG11438--CG5104\n  CG11438--CG8668\n  CG11438--Cys\n  CG11438--Rh50\n  CG11438--ng2\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG31111, CG8909, Gtp-bp, obst-E, opa, sol\n- Network density: approximately 0.40\n- Hub proteins (highly connected): obst-E, sol\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31111, CG8909, Gtp-bp, obst-E, opa, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG31111--obst-E\n  CG8909--obst-E\n  Gtp-bp--obst-E\n  obst-E--opa\n  obst-E--sol\n  opa--sol\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7208, CG7967, Dlc90F, lush\n\nTWO-HYBRID INTERACTIONS:\n  CG7208--CG7967\n  CG7208--Dlc90F\n  CG7208--lush\n  Dlc90F--Dlc90F\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dlc90F--Dlc90F\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: alphaKap4\n\nPredict the interactions for alphaKap4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7208--alphaKap4"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ\n- Network density: approximately 0.58\n- Hub proteins (highly connected): CG17765, dsx\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG17765--CG17765\n  CG17765--grp\n  CG17765--squ\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--CG17765\n  CG17259--Cnx99A\n  CG17259--Glt\n  CG17259--Pi3K68D\n  CG17765--Cnx99A\n  CG17765--Glt\n  CG17765--Pi3K68D\n  CG17765--dsx\n  Cnx99A--Glt\n  Cnx99A--Pi3K68D\n  Glt--Pi3K68D\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Best2, CG18746, CG8833, Leash\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG8833\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG8833\n  CG8833--Leash\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: CG6843\n\nPredict the interactions for CG6843:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG6843--CG6843\n  CG6843--CG8833\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG6843"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Best2, CG18746, CG6843, CG8833, Leash"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG18746, CG6843, CG8833, Leash\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG8833\n  CG6843--CG6843\n  CG6843--CG8833\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG6843\n  CG18746--CG8833\n  CG8833--Leash\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10265, CG17625, FoxP, lola"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10265, CG17625, FoxP, lola\n\nTWO-HYBRID INTERACTIONS:\n  CG10265--CG17625\n  CG17625--FoxP\n  CG17625--lola\n  FoxP--FoxP\n  FoxP--FoxP\n  lola--lola\n  lola--lola\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  lola--lola\n  lola--lola\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG7879, Pli\n- Total interactions: approximately 15"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG7879\n  CG12470--CG7879\n  CG30122--CG30122\n  CG30122--CG7879\n  CG7879--CG8407\n  CG7879--CG9426\n  CG7879--Pli\n  CG7879--Su(H)\n  CG7879--Vps35\n  CG9426--CG9426\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7879--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Pli--Pli\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG42588, Cks85A, Tequila, vnd\n\nTWO-HYBRID INTERACTIONS:\n  CG42588--Tequila\n  CG42588--vnd\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42588, Cks85A, Tequila, vnd\n\nTWO-HYBRID INTERACTIONS:\n  CG42588--Cks85A\n  CG42588--Tequila\n  CG42588--vnd\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10219--CG12158\n  CG10219--CG1416\n  CG10219--CG17826\n  CG10219--CG31775\n  CG10219--Obp57c\n  CG10219--Tim9a\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1416--Tapdelta\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10219, CG12158, CG1416, CG17826, CG31775, CG5172, Obp57c, Tapdelta, Tim9a, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10219--CG12158\n  CG10219--CG1416\n  CG10219--CG17826\n  CG10219--CG31775\n  CG10219--CG5172\n  CG10219--Obp57c\n  CG10219--Tapdelta\n  CG10219--Tim9a\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1416--Tapdelta\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  CG10219--smg\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG10621, Cpr100A\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10621, CG13245, CG2931, Cpr100A, Efa6, Lin29, TfIIEbeta, rau\n\nTWO-HYBRID INTERACTIONS:\n  CG10621--CG13245\n  CG10621--CG2931\n  CG10621--Cpr100A\n  CG10621--Efa6\n  CG10621--Lin29\n  CG10621--TfIIEbeta\n  CG10621--rau\n  Cpr100A--Cpr100A\n  Efa6--Efa6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rau--rau\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG2972--CG7126\n  CG2972--exd\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2972--gig\n  Tsc1--gig\n  Tsc1--gig\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG7126, Tsc1, exd, gig, l(1)G0004\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG2972--CG7126\n  CG2972--exd\n  CG2972--l(1)G0004\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2972--Tsc1\n  CG2972--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10927, CG17162, CG3225, CG33129, CG6020, Hsp60, Tollo, alph, robl62A\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--CG17162\n  CG10927--CG3225\n  CG10927--CG33129\n  CG10927--CG6020\n  CG10927--Tollo\n  CG10927--alph\n  CG10927--robl62A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10927--Hsp60\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11454, CG14569, CG14655, CG4622, CG7967, Ibf2, Ire1, Nnf1a, p53\n\nTWO-HYBRID INTERACTIONS:\n  CG11454--CG4622\n  CG11454--CG4622\n  CG11454--Ibf2\n  CG14569--CG4622\n  CG14655--CG4622\n  CG4622--CG7967\n  CG4622--Ibf2\n  CG4622--Ire1\n  CG4622--Nnf1a\n  CG4622--p53\n  CG7967--Nnf1a\n  Ibf2--Ibf2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide\n\nTWO-HYBRID INTERACTIONS:\n  Acp95EF--spheroide\n  Edc3--spheroide\n  PebIII--spheroide\n  RN-tre--spheroide\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14823--spheroide\n  CG9581--spheroide\n  Fer1HCH--spheroide\n  Jon65Aiv--spheroide\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Edc3--Edc3\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp95EF, CG14823, CG9581, Edc3, Fer1HCH, Jon65Aiv, PebIII, RN-tre, fra, spheroide\n\nTWO-HYBRID INTERACTIONS:\n  Acp95EF--spheroide\n  Edc3--spheroide\n  PebIII--spheroide\n  RN-tre--spheroide\n  fra--spheroide\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14823--spheroide\n  CG9581--Jon65Aiv\n  CG9581--spheroide\n  Fer1HCH--Jon65Aiv\n  Fer1HCH--spheroide\n  Jon65Aiv--spheroide\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Edc3--Edc3\n  fra--fra\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg\n\nTWO-HYBRID INTERACTIONS:\n  AP-1gamma--CG15185\n  CG12115--CG15185\n  CG15185--CG7786\n  CG15185--osk\n  CG15185--sgg\n\nFRET INTERACTIONS:\n  CG7786--CG7786\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10663--CG2199\n  CG10663--Ef1alpha48D\n  CG10663--His3.3B\n  CG10663--Pax\n  CG10663--Syp\n  CG10663--geminin\n  CG10663--lcs\n  Rtnl1--Rtnl1\n  geminin--geminin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10663--Rtnl1\n  Rtnl1--Rtnl1\n  Rtnl1--Syp\n  Rtnl1--Syp\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Prosbeta2, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  AGO2--PIG-S\n  BM-40-SPARC--PIG-S\n  BM-40-SPARC--Vsx2\n  CG44009--PIG-S\n  CG4848--PIG-S\n  Hsc70-4--PIG-S\n  PIG-S--Prosbeta2\n  PIG-S--Vsx2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n  CG11190--PIG-S\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: Pdh\n\nPredict the interactions for Pdh:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  PIG-S--Pdh\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Pdh--Pdh"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13074, Cdlc2, Gapdh1, Pvf1, RpL15, RpL19, RpL41, ctp, robl\n\nTWO-HYBRID INTERACTIONS:\n  CG13074--Cdlc2\n  CG13074--Gapdh1\n  CG13074--Pvf1\n  CG13074--RpL15\n  CG13074--RpL19\n  CG13074--RpL41\n  CG13074--ctp\n  CG13074--robl\n  CG13074--robl\n  RpL19--ctp\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL15--RpL19\n  RpL15--RpL41\n  RpL19--RpL41\n  ctp--ctp\n  ctp--robl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 9 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG14354, CG15631, Clamp, HLH4C, Pk17E\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG10053--CG15631\n  CG10053--Clamp\n  CG10053--HLH4C\n  CG10053--Pk17E\n  Clamp--Clamp\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AnxB10, CG15717, CG7675, CG8003, CG8525, W, p53, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG15717--CG8525\n  CG7675--W\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--CG15717\n  AnxB10--CG7675\n  AnxB10--CG8525\n  CG15717--CG7675\n  CG15717--CG8525\n  CG7675--CG8525\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  W--p53\n  W--p53\n  W--p53\n  W--rpr\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  p53--p53\n  p53--p53\n  p53--p53\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 8 proteins, 23 interactions\n\nNew protein to integrate: Corp\n\nPredict the interactions for Corp:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8003--Corp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--Corp\n  CG15717--Corp\n  CG7675--Corp\n  CG8525--Corp\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Corp--W\n  Corp--p53\n  Corp--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Corp--p53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Corp--p53\n  Corp--p53"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG4447, CG9577, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG4447--CG9577\n  CG9577--CG9577\n  CG9577--Traf6\n  CG9577--Trs31\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Rab6\n  CG9577--Su(P)\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG4447--Tom20\n  CG9577--Tom20\n  CG9577--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 8 proteins, 20 interactions\n\nNew protein to integrate: Leash\n\nPredict the interactions for Leash:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Leash\n\nTWO-HYBRID INTERACTIONS:\n  Leash--Leash"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10195, CG18012, CG3107, CG7025, Nop60B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10195, CG18012, CG3107, CG7025, Nop60B\n\nTWO-HYBRID INTERACTIONS:\n  CG10195--CG7025\n  CG18012--CG7025\n  CG3107--CG7025\n  CG7025--Nop60B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, hep, puc\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--CG4853\n  Axud1--Pp1alpha-96A\n  Axud1--Prpk\n  Axud1--Spt5\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Axud1--Dcr-2\n  Axud1--puc\n  hep--puc\n  hep--puc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--bsk\n  Axud1--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-2--Dcr-2\n  bsk--hep\n\nNETWORK SUMMARY: 9 proteins, 31 interactions\n\nNew protein to integrate: cdc2\n\nPredict the interactions for cdc2:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--cdc2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10144, Dcp1, Rab5, Vps16A, car, dor, lt\n\nTWO-HYBRID INTERACTIONS:\n  CG10144--Dcp1\n  CG10144--dor\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Dcp1--Dcp1\n  Vps16A--lt\n  car--dor\n  car--dor\n  car--lt\n  dor--lt\n\nCO-FRACTIONATION INTERACTIONS:\n  car--dor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10144--lt\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10144--Rab5\n  CG10144--Vps16A\n  CG10144--car\n  CG10144--dor\n  Rab5--Vps16A\n  Rab5--car\n  Rab5--dor\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 7 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: DESI1, FGF7, Fgfr2, HSPG2, PTX3, UBQLN1\n\nTWO-HYBRID INTERACTIONS:\n  DESI1--FGF7\n  DESI1--UBQLN1\n  FGF7--HSPG2\n  FGF7--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--Fgfr2\n  FGF7--HSPG2\n  FGF7--PTX3\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  FGF7--HSPG2\n  UBQLN1--UBQLN1\n  UBQLN1--UBQLN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  DESI1--UBQLN1\n  UBQLN1--UBQLN1\n\nNETWORK SUMMARY: 6 proteins, 18 interactions\n\nNew protein to integrate: FGFR2\n\nPredict the interactions for FGFR2:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-CRYSTAL STRUCTURE INTERACTIONS:\n  FGFR2--FGFR2\n  FGFR2--FGFR2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGF7--FGFR2\n  FGFR2--FGFR2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n\nTWO-HYBRID INTERACTIONS:\n  CG10914--CG15631\n  CG10914--CG15676\n  CG10914--CG3528\n  CG10914--CG7009\n  CG15631--CG15676\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10914, CG15631, CG15676, CG3528, CG7009, GstE1\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10914\n  CG10914--CG15631\n  CG10914--CG15676\n  CG10914--CG3528\n  CG10914--CG7009\n  CG10914--GstE1\n  CG15631--CG15676\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12581, CG3085, CG7987, Cka, Jon25Bii, Jon65Ai, Jon65Aiii, Jon99Cii, Snr1, yip7\n\nTWO-HYBRID INTERACTIONS:\n  CG12581--CG3085\n  CG12581--CG7987\n  CG12581--Cka\n  CG12581--Jon25Bii\n  CG12581--Jon65Ai\n  CG12581--Jon65Aiii\n  CG12581--Jon99Cii\n  CG12581--Snr1\n  CG12581--yip7\n  CG3085--Jon99Cii\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14478, CG3842, CG5144, Cyp6a9, bab2, bic\n\nTWO-HYBRID INTERACTIONS:\n  CG14478--CG5144\n  CG3842--CG5144\n  CG5144--Cyp6a9\n  CG5144--bab2\n  CG5144--bic\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: Jheh1\n\nPredict the interactions for Jheh1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5144--Jheh1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel\n\nTWO-HYBRID INTERACTIONS:\n  CG14868--Ns3\n  CG5537--Ns3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--dm\n  Ns3--gig\n  Rheb--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Ns3--kel\n  Rheb--Rheb\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14868, CG15152, CG5537, Ns3, Pallidin, Rheb, Thor, dm, gig, kel\n\nTWO-HYBRID INTERACTIONS:\n  CG14868--Ns3\n  CG15152--Ns3\n  CG5537--Ns3\n  Ns3--Pallidin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Ns3--Rheb\n  Ns3--Thor\n  Ns3--dm\n  Ns3--gig\n  Rheb--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Ns3--kel\n  Rheb--Rheb\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12012, CG18336, CG4822, caps, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG18336--CG4822\n  CG4822--caps\n  CG4822--mle\n  mle--mle\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12012, CG18336, CG4822, caps, mle\n\nTWO-HYBRID INTERACTIONS:\n  CG18336--CG4822\n  CG4822--caps\n  CG4822--mle\n  mle--mle\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG12012--CG4822\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mle--mle\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13293, CG6175, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n\nTWO-HYBRID INTERACTIONS:\n  CG13293--CG6175\n  CG6175--CSN8\n  CG6175--CycK\n  CG6175--Pp2A-29B\n  CG6175--Prosbeta3\n  CG6175--Rcd5\n  CG6175--Tektin-A\n  CG6175--betaggt-II\n  CG6175--ple\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARNT, ARNT2, ARNTL, MAGED1, NPAS4, TCP1\n\nTWO-HYBRID INTERACTIONS:\n  ARNT--NPAS4\n  ARNT2--NPAS4\n  ARNTL--NPAS4\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ARNT--ARNT\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARNT2--MAGED1\n  ARNT2--NPAS4\n  MAGED1--NPAS4\n\nFRET INTERACTIONS:\n  ARNT--ARNT\n  ARNT2--MAGED1\n  MAGED1--NPAS4\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARNT--ARNT\n  ARNT--NPAS4\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  NPAS4--TCP1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ARNTL--ARNTL\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ARNT--ARNT\n\nNETWORK SUMMARY: 6 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68\n- Network density: approximately 0.31\n- Hub proteins (highly connected): GstT4, dm\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68\n\nTWO-HYBRID INTERACTIONS:\n  CG13551--GstT4\n  CG30497--GstT4\n  CG8032--GstT4\n  GstT4--Nup54\n  GstT4--Tektin-A\n  GstT4--dm\n  GstT4--mrn\n  GstT4--pUf68\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dm--pUf68\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dm--pUf68\n  dm--pUf68\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AdenoK, CG17187, Glycogenin, Taf12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AdenoK, CG17187, Glycogenin, Taf12\n\nTWO-HYBRID INTERACTIONS:\n  AdenoK--Glycogenin\n  AdenoK--Taf12\n  Glycogenin--Glycogenin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AdenoK--CG17187\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf12--Taf12\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10589, CG9986, Hey, Met75Ca, Met75Cb, Phm\n\nTWO-HYBRID INTERACTIONS:\n  CG10589--Phm\n  CG9986--Phm\n  Hey--Phm\n  Met75Ca--Phm\n  Met75Cb--Phm\n\nNETWORK SUMMARY: 6 proteins, 5 interactions\n\nNew protein to integrate: nej\n\nPredict the interactions for nej:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Phm--nej\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  nej--nej"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13293, CSN8, CycK, Pp2A-29B, Prosbeta3, Rcd5, Tektin-A, betaggt-II, ple\n\nNETWORK SUMMARY: 9 proteins, 0 interactions\n\nNew protein to integrate: CG6175\n\nPredict the interactions for CG6175:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13293--CG6175\n  CG6175--CSN8\n  CG6175--CycK\n  CG6175--Pp2A-29B\n  CG6175--Prosbeta3\n  CG6175--Rcd5\n  CG6175--Tektin-A\n  CG6175--betaggt-II\n  CG6175--ple"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11456, CG13005, CG4854, CG6276, CG6654, Hr78, Jon65Aiv, Sox21b, TpnC41C\n\nTWO-HYBRID INTERACTIONS:\n  CG11456--CG13005\n  CG11456--CG4854\n  CG11456--CG6276\n  CG11456--CG6654\n  CG11456--Hr78\n  CG11456--Jon65Aiv\n  CG11456--Sox21b\n  CG11456--TpnC41C\n  CG4854--CG4854\n  CG4854--Sox21b\n  Hr78--Sox21b\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG7492--PHDP\n  CG7492--kermit\n  Nsf2--Nsf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7492--CG7737\n  CG7492--Got1\n  CG7492--HIP-R\n  CG7492--Sod\n  CG7737--HIP-R\n  CG7737--Sod\n  Got1--Sod\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7492--Nsf2\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 8 proteins, 12 interactions\n\nNew protein to integrate: CG1532\n\nPredict the interactions for CG1532:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG1532--CG7492\n  CG1532--CG7737\n  CG1532--Got1\n  CG1532--HIP-R\n  CG1532--Sod"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10341, Nup58, Pms2, Prp19, Vdup1, mbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10341--Nup58\n  CG10341--Pms2\n  CG10341--Prp19\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10341--mbl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  mbl--mbl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10341--Vdup1\n\nNETWORK SUMMARY: 6 proteins, 6 interactions\n\nNew protein to integrate: Poxm\n\nPredict the interactions for Poxm:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10341--Poxm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl\n- Network density: approximately 0.42\n- Hub proteins (highly connected): Acp26Aa, AdipoR\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp26Aa, AdipoR, CG1418, CG8997, Chrac-16, Hsp23, Hsp26, Mes4, cpa, debcl\n\nTWO-HYBRID INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n  Acp26Aa--AdipoR\n  AdipoR--CG1418\n  AdipoR--CG8997\n  AdipoR--Chrac-16\n  AdipoR--Hsp23\n  AdipoR--Hsp26\n  AdipoR--Mes4\n  AdipoR--cpa\n  AdipoR--debcl\n  Hsp23--Hsp26\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp23--Hsp26\n\nCO-FRACTIONATION INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Acp26Aa--Acp26Aa\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Acp26Aa--Acp26Aa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Acp26Aa--Acp26Aa\n  Hsp23--Hsp26\n  Hsp23--Hsp26\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10208, CG7564, Fadd, Sxl\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10208--Fadd\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, Fadd, Sxl\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG10208--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10208--Fadd\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 4 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs31, gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs31\n  CG9577--CG9577\n  CG9577--Trs31\n  Met75Ca--Trs31\n  Met75Cb--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs31\n  Trs31--gry\n\nNETWORK SUMMARY: 7 proteins, 15 interactions\n\nNew protein to integrate: Trs20\n\nPredict the interactions for Trs20:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Trs20--Trs31\n  Trs20--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Trs20--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Trs20\n  Trs20--gry"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17826, CG34324, CG9572, Cpr64Ad, Mst87F, Mst98Ca, Mst98Cb, NimC3, rev7, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG17826--CG34324\n  CG17826--Cpr64Ad\n  CG34324--CG9572\n  CG34324--Cpr64Ad\n  CG34324--Mst87F\n  CG34324--Mst98Ca\n  CG34324--Mst98Cb\n  CG34324--NimC3\n  CG34324--rev7\n  CG34324--sxc\n  CG9572--Cpr64Ad\n  rev7--rev7\n  rev7--rev7\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG10513--Cwc25\n  CG10513--Prp3\n  CG10513--Rlb1\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG10513--CG13168\n  CG10513--Cwc25\n  CG10513--Prp3\n  CG10513--Rlb1\n  Prp3--Prp3\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--eIF2B-delta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-delta--skpC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ird5--ird5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Trf2--eIF2B-delta\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--eIF2B-delta\n  ci--ci\n  ci--eIF2B-delta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-delta--skpC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  eIF2B-delta--ird5\n  ird5--ird5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Trf2--eIF2B-delta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG13704, CG14074, CG8083, CG8909, Syt12, ZnT41F, lwr, mex1, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--mex1\n  CG13704--mex1\n  CG14074--CG14074\n  CG14074--lwr\n  CG14074--mex1\n  CG8083--mex1\n  CG8909--mex1\n  Syt12--mex1\n  Syt12--ninaD\n  ZnT41F--ZnT41F\n  ZnT41F--mex1\n  lwr--lwr\n  lwr--lwr\n  lwr--mex1\n  mex1--ninaD\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG30122, CG42389, CG4325, CG6428, CG9791, Hsc70-4, bif, rti, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG30122\n  CG11523--CG42389\n  CG11523--CG6428\n  CG11523--CG9791\n  CG11523--Hsc70-4\n  CG11523--bif\n  CG30122--CG30122\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11523--CG4325\n  CG11523--rti\n  CG11523--sgg\n  CG11523--sgg\n  CG11523--sgg\n  CG4325--sgg\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10887, CG1104, CG12674, CG31954, CG9008, Dip-B, Hsc70-1, Hsc70-2, clu, lbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10887--CG12674\n  CG10887--Dip-B\n  Dip-B--Dip-B\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10887--CG1104\n  CG10887--CG31954\n  CG10887--CG9008\n  CG10887--Hsc70-1\n  CG10887--Hsc70-2\n  CG10887--clu\n  CG10887--lbl\n  Hsc70-1--Hsc70-2\n  Hsc70-1--clu\n  Hsc70-2--clu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  clu--clu\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Swim, TBPH, cer, per, wg, zormin\n- Network density: approximately 0.73\n- Hub proteins (highly connected): Swim, TBPH\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Swim, TBPH, cer, per, wg, zormin\n\nTWO-HYBRID INTERACTIONS:\n  Swim--TBPH\n  Swim--cer\n  Swim--per\n  Swim--zormin\n  TBPH--TBPH\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Swim--wg\n  per--per\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  TBPH--TBPH\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n  per--per\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Swim--wg\n\nNETWORK SUMMARY: 6 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B\n- Network density: approximately 0.53\n- Hub proteins (highly connected): LSm1, me31B\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10418, CG6610, Hil, LSm-4, LSm1, LSm7, Patr-1, Prosbeta5, l(2)37Cg, me31B\n\nTWO-HYBRID INTERACTIONS:\n  CG10418--LSm1\n  CG6610--LSm7\n  Hil--LSm1\n  LSm1--Prosbeta5\n  LSm1--l(2)37Cg\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10418--CG6610\n  CG6610--LSm1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  LSm-4--LSm1\n  LSm-4--LSm1\n  LSm1--LSm7\n  LSm1--LSm7\n  LSm1--Patr-1\n  LSm1--Patr-1\n  LSm1--me31B\n  LSm7--Patr-1\n  LSm7--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n  Patr-1--me31B\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Patr-1--me31B\n  me31B--me31B\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2\n- Network density: approximately 0.38\n- Hub proteins (highly connected): PLXNB3, CUL7\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGEF11, BTBD3, CUL7, DSCR9, HSPA13, MAGI2, MAGI3, PLXNB3, RNF123, SPOCK2\n\nTWO-HYBRID INTERACTIONS:\n  ARHGEF11--PLXNB3\n  ARHGEF11--PLXNB3\n  BTBD3--BTBD3\n  BTBD3--PLXNB3\n  CUL7--PLXNB3\n  DSCR9--PLXNB3\n  DSCR9--SPOCK2\n  HSPA13--PLXNB3\n  MAGI2--PLXNB3\n  MAGI3--PLXNB3\n  PLXNB3--SPOCK2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ARHGEF11--PLXNB3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL7--CUL7\n  CUL7--CUL7\n  CUL7--CUL7\n  MAGI3--RNF123\n  PLXNB3--RNF123\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG42588, Tequila, vnd\n\nTWO-HYBRID INTERACTIONS:\n  CG42588--Tequila\n  CG42588--vnd\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Cks85A\n\nPredict the interactions for Cks85A:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG42588--Cks85A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12020, CG12470, CG4328, Mdr65, Neto, RpS11, Ubqn, eas, para, sns\n\nTWO-HYBRID INTERACTIONS:\n  CG12020--Mdr65\n  CG12470--Mdr65\n  CG12470--Neto\n  CG4328--Mdr65\n  Mdr65--Neto\n  Mdr65--RpS11\n  Mdr65--Ubqn\n  Mdr65--sns\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mdr65--eas\n  Mdr65--para\n  eas--para\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sns--sns\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG5274, IntS10, L, cup, gro\n\nTWO-HYBRID INTERACTIONS:\n  CG5274--IntS10\n  CG5274--L\n  CG5274--cup\n  CG5274--gro\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n\nNETWORK SUMMARY: 5 proteins, 11 interactions\n\nNew protein to integrate: CycK\n\nPredict the interactions for CycK:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG5274--CycK"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7967, CG8010, Sas-4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7967, CG8010, Sas-4\n\nTWO-HYBRID INTERACTIONS:\n  CG7967--CG8010\n  CG8010--CG8010\n  CG8010--Sas-4\n  Sas-4--Sas-4\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10336, CG14866, CG1671, CG5191, Capa, Gad1, Oatp58Db, Pex19, lectin-33A\n\nNETWORK SUMMARY: 9 proteins, 0 interactions\n\nNew protein to integrate: CG7191\n\nPredict the interactions for CG7191:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG14866--CG7191\n  CG1671--CG7191\n  CG5191--CG7191\n  CG7191--Capa\n  CG7191--Gad1\n  CG7191--Oatp58Db\n  CG7191--Pex19\n  CG7191--lectin-33A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Jwa, alphaCOP, epsilonCOP, fra\n\nTWO-HYBRID INTERACTIONS:\n  Jwa--epsilonCOP\n  alphaCOP--epsilonCOP\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fra--fra\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  epsilonCOP--fra\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: rti\n\nPredict the interactions for rti:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  alphaCOP--rti\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  alphaCOP--rti\n  epsilonCOP--rti\n  rti--rti"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11190, CG4406, CG5973, PIG-S, rti\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG11190, rti\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG4406, CG5973, PIG-S, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--CG4406\n  CG11190--PIG-S\n  CG11190--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC\n- Network density: approximately 0.52\n- Hub proteins (highly connected): ci, eIF2B-delta\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, Trf2, ci, eIF2B-beta, eIF2B-delta, ird5, skpC\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--eIF2B-delta\n  ci--ci\n  ci--eIF2B-delta\n  eIF2B-beta--eIF2B-delta\n  eIF2B-delta--skpC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  eIF2B-delta--ird5\n  ird5--ird5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Trf2--eIF2B-delta\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11523, CG9791, Tom20, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG9791\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG9791--Tom20\n  CG9791--zuc\n  Tom20--zuc\n  Tom20--zuc\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11523, CG9791, Tom20, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11523--CG9791\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG9791--Tom20\n  CG9791--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 4 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10721, CG1503, Hdac3, W, rpr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10721, CG1503, Hdac3, W, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG10721--CG1503\n  CG1503--Hdac3\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG1503--W\n  CG1503--rpr\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2\n\nTWO-HYBRID INTERACTIONS:\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SLC9A3R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nFAR WESTERN INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  CFTR--SLC9A3R1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  KCNJ1--SH3RF1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--SLC9A3R2\n  CFTR--SLC9A3R2\n  SLC9A3R1--SLC9A3R2\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nNETWORK SUMMARY: 5 proteins, 23 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CFTR, KCNJ1, SH3RF1, SLC9A3R1, SLC9A3R2\n\nTWO-HYBRID INTERACTIONS:\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n  SLC9A3R1--SLC9A3R1\n  SLC9A3R1--SLC9A3R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  CFTR--KCNJ1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nFAR WESTERN INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  KCNJ1--SH3RF1\n  SH3RF1--SH3RF1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  CFTR--SLC9A3R2\n  SLC9A3R1--SLC9A3R2\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nNETWORK SUMMARY: 5 proteins, 40 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo\n\nTWO-HYBRID INTERACTIONS:\n  CG7200--eRF1\n  DnaJ-1--Sap47\n  DnaJ-1--eRF1\n  Sap47--eRF1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n  Egfr--arm\n  Egfr--arm\n  smo--smo\n  smo--smo\n  smo--smo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Egfr--arm\n  Egfr--arm\n  Egfr--peb\n  eRF1--smo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Egfr--eRF1\n  arm--eRF1\n  eRF1--peb\n  eRF1--shn\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nNETWORK SUMMARY: 9 proteins, 26 interactions\n\nNew protein to integrate: wg\n\nPredict the interactions for wg:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  eRF1--wg\n  smo--wg"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1116, CG18417, CG7985, ph-p"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1116, CG18417, CG7985, ph-p\n\nTWO-HYBRID INTERACTIONS:\n  CG1116--CG18417\n  CG18417--CG7985\n  CG18417--ph-p\n  ph-p--ph-p\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ph-p--ph-p\n\nCO-FRACTIONATION INTERACTIONS:\n  ph-p--ph-p\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11266, CG4116, CG8273, Rga, loqs\n- Network density: approximately 1.00\n- Hub proteins (highly connected): loqs, CG8273\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG4116, CG8273, Rga, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG8273\n  CG4116--CG8273\n  CG4116--loqs\n  CG8273--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  loqs--loqs\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG8273--Rga\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17265, CG43143, CG45105, Fas2, Kap-alpha3, Pp1-87B, homer, lva, mbo\n\nTWO-HYBRID INTERACTIONS:\n  CG17265--CG17265\n  CG17265--CG45105\n  CG43143--CG45105\n  CG45105--Kap-alpha3\n  CG45105--Pp1-87B\n  CG45105--homer\n  CG45105--mbo\n\nNAN INTERACTIONS:\n  CG45105--lva\n  Fas2--lva\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG43143--Fas2\n  CG43143--Fas2\n  CG45105--Fas2\n  CG45105--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: coro\n\nPredict the interactions for coro:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG45105--coro"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG17765--CG17765\n  CG17765--squ\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--CG17765\n  CG17259--Glt\n  CG17259--Pi3K68D\n  CG17765--Pi3K68D\n  CG17765--dsx\n  Cnx99A--Pi3K68D\n  Glt--Pi3K68D\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17259, CG17765, Cnx99A, Glt, Pi3K68D, dsx, grp, squ\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG17765--CG17765\n  CG17765--grp\n  CG17765--squ\n  dsx--dsx\n  dsx--dsx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17259--CG17765\n  CG17259--Cnx99A\n  CG17259--Glt\n  CG17259--Pi3K68D\n  CG17765--Cnx99A\n  CG17765--Glt\n  CG17765--Pi3K68D\n  CG17765--dsx\n  Cnx99A--Glt\n  Cnx99A--Pi3K68D\n  Glt--Pi3K68D\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  grp--grp\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dsx--dsx\n  dsx--dsx\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb\n\nTWO-HYBRID INTERACTIONS:\n  CG7182--CG7191\n  CG7182--Pak\n  CG7182--Uba2\n  CG7182--mad2\n  CG7182--tomb\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti, tomb\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG7182\n  CG7182--CG7191\n  CG7182--Pak\n  CG7182--Tep4\n  CG7182--Uba2\n  CG7182--mad2\n  CG7182--tomb\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7182--rti\n  rti--rti\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10336, CG7191, Rcd-1r, TER94"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG7191, Rcd-1r, TER94\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG10336--Rcd-1r\n  CG10336--TER94\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TER94--TER94\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Axud1, CG8907, S6k\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: Prpk\n\nPredict the interactions for Prpk:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Axud1--Prpk\n  CG8907--Prpk\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prpk--S6k"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, Lcp65Ag1, Lcp65Ag2, Lcp65Ag3, sa\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--Lcp65Ag1\n  CG2082--Lcp65Ag2\n  CG2082--Lcp65Ag3\n  CG2082--sa\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10527, CG13321, CG13928, CG2199, Obp56d, imd, orb2, osa, smg\n\nTWO-HYBRID INTERACTIONS:\n  CG10527--CG13321\n  CG10527--CG13928\n  CG13321--CG13928\n  CG13928--CG2199\n  CG13928--Obp56d\n  CG13928--imd\n  CG13928--osa\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG13928--orb2\n  CG13928--orb2\n  CG13928--smg\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--smg\n  orb2--smg\n  osa--osa\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13928--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  imd--imd\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nCO-FRACTIONATION INTERACTIONS:\n  imd--imd\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  imd--imd\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 9 proteins, 27 interactions\n\nNew protein to integrate: Dok\n\nPredict the interactions for Dok:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13928--Dok"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10470, Hrs, Rab5, Rab7, TSG101, Vps25, Vps39, orb2, shrb, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--sky\n  Rab7--Vps39\n  TSG101--TSG101\n  TSG101--TSG101\n  TSG101--TSG101\n  shrb--shrb\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab5--Rab7\n  orb2--orb2\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  TSG101--TSG101\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TSG101--TSG101\n  orb2--orb2\n  orb2--orb2\n  orb2--orb2\n  orb2--sky\n\nPCA INTERACTIONS:\n  TSG101--TSG101\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Rab5--sky\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hrs--sky\n  Rab7--sky\n  TSG101--sky\n  Vps25--sky\n  Vps39--sky\n  shrb--sky\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  orb2--orb2\n\nPROTEIN-RNA INTERACTIONS:\n  orb2--orb2\n\nFRET INTERACTIONS:\n  orb2--orb2\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms\n\nTWO-HYBRID INTERACTIONS:\n  CG13625--kin17\n  CG17162--kin17\n  CG2017--kin17\n  CG31807--CG31807\n  Traf-like--kin17\n  kin17--l(1)sc\n  kin17--lms\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG13625, CG17162, CG2017, CG31807, Hsp60B, Traf-like, kin17, l(1)sc, lms\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--kin17\n  CG13625--kin17\n  CG17162--kin17\n  CG2017--kin17\n  CG31807--CG31807\n  CG31807--kin17\n  Hsp60B--kin17\n  Traf-like--kin17\n  kin17--l(1)sc\n  kin17--lms\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11200, CG1561, CG17323, CG33144, CG7220, CG8191, ZnT41F\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG11200--CG7220\n  CG11200--CG8191\n  CG11200--ZnT41F\n  ZnT41F--ZnT41F\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11200--CG1561\n  CG11200--CG17323\n\nNETWORK SUMMARY: 7 proteins, 7 interactions\n\nNew protein to integrate: BicC\n\nPredict the interactions for BicC:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  BicC--CG11200\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  BicC--BicC\n\nPROTEIN-RNA INTERACTIONS:\n  BicC--BicC"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bx, Chi, Grasp65, Hydr2, how\n- Network density: approximately 1.90\n- Hub proteins (highly connected): Chi, Bx\n- Total interactions: approximately 19"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, Chi, Grasp65, Hydr2, how\n\nTWO-HYBRID INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Grasp65--Hydr2\n  Hydr2--how\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Chi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Hydr2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Chi--Hydr2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bx--Chi\n  Chi--Chi\n  Chi--Chi\n  how--how\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Grasp65--how\n\nNETWORK SUMMARY: 5 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG14315--CG6683\n  CG6683--CG6683\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--CG14315\n  Argk--Mhc\n  Argk--Prm\n  Argk--Tm2\n  Argk--kdn\n  CG10949--CG6683\n  CG14315--Mhc\n  CG14315--Prm\n  CG14315--RyR\n  CG14315--Tm2\n  CG14315--kdn\n  CG14315--l(2)01289\n  Mhc--Prm\n  Mhc--Tm2\n  Mhc--kdn\n  Prm--Tm2\n  Prm--kdn\n  RyR--l(2)01289\n  Tm2--kdn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mhc--Tm2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Mhc--Mhc\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG2767, Moe\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bx, CG10051, CG2767, CG5355, CG6084, Fkbp14, Moe, RhoGDI, Ssdp, yip2\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG2767\n  Moe--Moe\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Ssdp\n  CG2767--CG5355\n  CG2767--CG6084\n  CG2767--Fkbp14\n  CG2767--Moe\n  CG2767--RhoGDI\n  CG2767--yip2\n  CG5355--Fkbp14\n  CG6084--Fkbp14\n  CG6084--Moe\n  CG6084--RhoGDI\n  Fkbp14--Moe\n  Fkbp14--RhoGDI\n  Fkbp14--yip2\n  Moe--RhoGDI\n  Moe--yip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--CG2767\n  Bx--Ssdp\n  CG2767--Ssdp\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1\n- Network density: approximately 0.25\n- Hub proteins (highly connected): CG13168, CG10513\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG13168, CG15423, CG15549, CG15578, CG15919, HP6, hoe1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG13168\n  CG13168--CG15423\n  CG13168--CG15549\n  CG13168--CG15578\n  CG13168--CG15919\n  CG13168--HP6\n  CG13168--hoe1\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr\n- Network density: approximately 0.94\n- Hub proteins (highly connected): W, p53\n- Total interactions: approximately 34"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB10, CG15717, CG7675, CG8003, CG8525, Corp, W, p53, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG15717--CG8525\n  CG7675--W\n  CG8003--Corp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AnxB10--CG15717\n  AnxB10--CG7675\n  AnxB10--CG8525\n  AnxB10--Corp\n  CG15717--CG7675\n  CG15717--CG8525\n  CG15717--Corp\n  CG7675--CG8525\n  CG7675--Corp\n  CG8525--Corp\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Corp--W\n  Corp--p53\n  Corp--rpr\n  W--p53\n  W--p53\n  W--p53\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Corp--p53\n  W--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Corp--p53\n  Corp--p53\n  W--rpr\n  W--rpr\n  p53--p53\n  p53--p53\n  p53--p53\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n  rpr--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr\n\nNETWORK SUMMARY: 9 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n- Network density: approximately 0.27\n- Hub proteins (highly connected): ATPCL, Tom20\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ATPCL, CG10137, CG11486, CG13454, CG14253, CG30263, Tom20, l(1)G0020, sba, sea\n\nTWO-HYBRID INTERACTIONS:\n  ATPCL--CG10137\n  ATPCL--CG11486\n  ATPCL--CG13454\n  ATPCL--CG14253\n  ATPCL--CG30263\n  ATPCL--l(1)G0020\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  ATPCL--sea\n  ATPCL--sea\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ATPCL--sba\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ATPCL--Tom20\n  Tom20--Tom20\n  Tom20--sea\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10075, CG11164, CG11322, CG12470, CG3704, Cpr50Ca, Moe, Plzf, RpS7\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG11164--CG11322\n  CG11322--CG12470\n  CG11322--CG3704\n  CG11322--Cpr50Ca\n  CG11322--Moe\n  CG11322--Plzf\n  CG11322--RpS7\n  Moe--Moe\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG3919\n\nPredict the interactions for CG3919:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11322--CG3919\n  CG3919--CG3919"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD\n\nTWO-HYBRID INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  IL1RAPL1--NCS1\n  IL1RAPL1--PTPRD\n  NCS1--NCS1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NR3C1--NR3C1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--IL1RAPL1\n  IL1RAPL1--NUDCD2\n  NR3C1--NR3C1\n  NUDCD2--NUDCD2\n\nFRET INTERACTIONS:\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n  NCS1--NCS1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IL1RAPL1--NR3C1\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: 18w, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n\nTWO-HYBRID INTERACTIONS:\n  CG9133--Tollo\n  CG9467--Tollo\n  Rel--Rel\n  Su(var)3-9--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dredd--Dredd\n  Rel--Rel\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dredd--Rel\n  Dredd--Rel\n  Dredd--Tollo\n  Dredd--Tollo\n  Rel--Tollo\n  Rel--Tollo\n  Toll-7--Tollo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tollo--dpp\n  Tollo--dpp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Dredd--Dredd\n  Dredd--Rel\n  Dredd--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nCO-LOCALIZATION INTERACTIONS:\n  18w--Tollo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dredd--Dredd\n\nNETWORK SUMMARY: 9 proteins, 21 interactions\n\nNew protein to integrate: CG10927\n\nPredict the interactions for CG10927:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10927--Tollo"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7564--Vap-33A\n  foxo--rictor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--S6kII\n  CG7564--foxo\n  CG7564--gig\n  CG7564--rictor\n  S6kII--gig\n  rictor--x16\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7564--x16\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, rictor, x16\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG7564--CG9098\n  CG7564--x16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7564--Vap-33A\n  foxo--rictor\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  foxo--rictor\n  foxo--rictor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--S6kII\n  CG7564--foxo\n  CG7564--gig\n  CG7564--rictor\n  S6kII--gig\n  Vap-33A--rictor\n  rictor--x16\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7564--x16\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n\nTWO-HYBRID INTERACTIONS:\n  CG10151--CG4270\n  CG10164--CG4270\n  CG10164--CG4270\n  CG12477--CG4270\n  CG13157--CG4270\n  CG14089--CG4270\n  CG34347--CG4270\n  CG4270--Set2\n  CG4270--br\n  CG4270--kni\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  br--br\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10514, CG11164, CG11892, CG9986, spn-B\n\nTWO-HYBRID INTERACTIONS:\n  CG10514--CG11892\n  CG11164--CG11892\n  CG11892--CG9986\n  CG11892--spn-B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: poe\n\nPredict the interactions for poe:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11892--poe"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum\n- Network density: approximately 1.47\n- Hub proteins (highly connected): pav, tum\n- Total interactions: approximately 53"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 14-3-3epsilon, 14-3-3zeta, Dsor1, Gl, Mlp84B, nesd, pav, phl, tum\n\nTWO-HYBRID INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Mlp84B--nesd\n  pav--tum\n  pav--tum\n  pav--tum\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  14-3-3epsilon--Dsor1\n  14-3-3epsilon--nesd\n  14-3-3epsilon--phl\n  14-3-3zeta--Dsor1\n  14-3-3zeta--nesd\n  14-3-3zeta--phl\n  Dsor1--nesd\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  nesd--pav\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  Dsor1--phl\n  nesd--pav\n  phl--tum\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--phl\n  Gl--nesd\n  nesd--pav\n  pav--tum\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  nesd--pav\n  nesd--phl\n  nesd--tum\n  nesd--tum\n  pav--tum\n  pav--tum\n  pav--tum\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  14-3-3epsilon--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n  14-3-3zeta--14-3-3zeta\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n  pav--tum\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n  pav--tum\n\nNETWORK SUMMARY: 9 proteins, 53 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  CBX1--CBX1\n  GRB2--GRB2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CBX1--CBX1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CBX1--CBX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  GRK5--GRK5\n\nTWO-HYBRID INTERACTIONS:\n  ABI3BP--CBX1\n  ABI3BP--FZD5\n  ABI3BP--GOT1\n  ABI3BP--GRB2\n  ABI3BP--MBNL1\n  GRB2--SPTBN1\n  SPDL1--SPDL1\n  SPTBN1--SPTBN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ABI3BP--GRK5\n  ABI3BP--SPDL1\n  GOT1--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRK5--SPTBN1\n  SPDL1--SPTBN1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ABI3BP--SPTBN1\n  SPTBN1--SPTBN1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ABI3BP--TIMP2\n  TIMP2--TIMP2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11407, IntS4, sgg\n- Network density: approximately 1.00\n- Hub proteins (highly connected): IntS4, sgg\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11407, IntS4, sgg\n\nTWO-HYBRID INTERACTIONS:\n  CG11407--IntS4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  IntS4--sgg\n  IntS4--sgg\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Swim, cer, per, wg, zormin\n\nTWO-HYBRID INTERACTIONS:\n  Swim--cer\n  Swim--per\n  Swim--zormin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Swim--wg\n  per--per\n\nCO-FRACTIONATION INTERACTIONS:\n  cer--cer\n  per--per\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Swim--wg\n\nNETWORK SUMMARY: 5 proteins, 8 interactions\n\nNew protein to integrate: TBPH\n\nPredict the interactions for TBPH:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Swim--TBPH\n  TBPH--TBPH\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  TBPH--TBPH"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Act5C, Arp1, CG10657, CG13887, CG4119, Df31, FK506-bp2, Ssb-c31a, abs, snRNP-U1-70K\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG10657\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Act5C--CG10657\n  CG10657--CG13887\n  CG10657--CG4119\n  CG10657--Df31\n  CG10657--FK506-bp2\n  CG10657--Ssb-c31a\n  CG10657--abs\n  CG10657--snRNP-U1-70K\n  CG13887--CG4119\n  CG13887--Df31\n  CG4119--Df31\n  CG4119--Ssb-c31a\n  CG4119--abs\n  CG4119--snRNP-U1-70K\n  Df31--FK506-bp2\n  Df31--Ssb-c31a\n  FK506-bp2--Ssb-c31a\n  Ssb-c31a--abs\n  Ssb-c31a--snRNP-U1-70K\n  abs--snRNP-U1-70K\n\nNETWORK SUMMARY: 10 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1041, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--CG7200\n  CG1041--Hakai\n  CG1041--Tango10\n  CG1041--TwdlE\n  CG1041--ebd1\n  CG1041--kin17\n  CG1041--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  rpr--rpr\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1041--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG4168\n\nPredict the interactions for CG4168:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1041--CG4168"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11570, CG13993, CG32201, CG9522, magu\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG32201--CG9522\n  CG9522--magu\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG13993, CG32201, CG9522, magu\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG9522\n  CG13993--CG9522\n  CG32201--CG9522\n  CG9522--magu\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10336, CG7191, Rcd-1r, TER94\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG10336, TER94\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10336, CG7191, Rcd-1r, TER94\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--CG7191\n  CG10336--Rcd-1r\n  CG10336--TER94\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TER94--TER94\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD\n- Network density: approximately 0.20\n- Hub proteins (highly connected): CG6310, RpS26\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Baldspot, CG15168, CG1746, CG30472, CG6310, Eaat1, RpS26, Tim17b2, fax, ninaD\n\nTWO-HYBRID INTERACTIONS:\n  Baldspot--CG6310\n  CG15168--CG6310\n  CG1746--CG6310\n  CG30472--CG6310\n  CG6310--Eaat1\n  CG6310--RpS26\n  CG6310--Tim17b2\n  CG6310--fax\n  CG6310--ninaD\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps\n\nTWO-HYBRID INTERACTIONS:\n  CG1324--CG42674\n  CG17107--CG42674\n  CG42674--MRG15\n  CG42674--Sec5\n  CG42674--Zasp66\n  CG42674--raps\n\nNETWORK SUMMARY: 9 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps\n\nTWO-HYBRID INTERACTIONS:\n  CG1324--CG42674\n  CG17107--CG42674\n  CG42674--MRG15\n  CG42674--RecQ4\n  CG42674--Sec5\n  CG42674--Zasp66\n  CG42674--kermit\n  CG42674--raps\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Osi6, l(1)G0193, p53\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  p53--p53\n  p53--p53\n  p53--p53\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: Cyp6a22\n\nPredict the interactions for Cyp6a22:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cyp6a22--Osi6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cyp6a22--p53\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cyp6a22--l(1)G0193"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc\n- Network density: approximately 0.81\n- Hub proteins (highly connected): zuc, CTPsyn\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8155, CTPsyn, Chi, RpS27A, TER94, p47, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG8155--p47\n  CTPsyn--CTPsyn\n  Chi--p47\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TER94--p47\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Chi--Chi\n  Chi--Chi\n  RpS27A--TER94\n  RpS27A--p47\n  TER94--TER94\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG8155--zuc\n  CTPsyn--CTPsyn\n  CTPsyn--p47\n  p47--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11164, CG2199, CG7849, CG7974, Oda, Traf6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, CG2199, CG7849, CG7974, Oda, Traf6\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--CG7974\n  CG2199--CG7974\n  CG7849--CG7974\n  CG7974--Oda\n  CG7974--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n\nNETWORK SUMMARY: 6 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n\nTWO-HYBRID INTERACTIONS:\n  CG10151--CG4270\n  CG10164--CG4270\n  CG10164--CG4270\n  CG12477--CG4270\n  CG13157--CG4270\n  CG4270--br\n  CG4270--kni\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  br--br\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10151, CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n\nTWO-HYBRID INTERACTIONS:\n  CG10151--CG4270\n  CG10164--CG4270\n  CG10164--CG4270\n  CG12477--CG4270\n  CG13157--CG4270\n  CG14089--CG4270\n  CG34347--CG4270\n  CG4270--Set2\n  CG4270--br\n  CG4270--kni\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  br--br\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bx, CG4822, Kr, caps, trn\n\nTWO-HYBRID INTERACTIONS:\n  CG4822--caps\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Kr\n  Bx--caps\n  Bx--caps\n  Bx--trn\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--caps\n  Bx--trn\n  Kr--caps\n  Kr--caps\n  caps--trn\n  caps--trn\n\nNETWORK SUMMARY: 5 proteins, 16 interactions\n\nNew protein to integrate: CG5541\n\nPredict the interactions for CG5541:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5541--caps\n  CG5541--caps"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5147, Crk, Sin, Sxl, ftz\n- Network density: approximately 1.30\n- Hub proteins (highly connected): Sxl, Sin\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5147, Crk, Sin, Sxl, ftz\n\nTWO-HYBRID INTERACTIONS:\n  CG5147--Sin\n  Crk--Sin\n  Sin--Sxl\n  Sin--ftz\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sin--Sxl\n  Sxl--Sxl\n\nNETWORK SUMMARY: 5 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17652, CG4617, CG6733, dyn-p25"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17652, CG4617, CG6733, dyn-p25\n\nTWO-HYBRID INTERACTIONS:\n  CG17652--CG4617\n  CG17652--CG6733\n  CG17652--dyn-p25\n  CG4617--CG4617\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289\n- Network density: approximately 0.58\n- Hub proteins (highly connected): CG14315, Tm2\n- Total interactions: approximately 26"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG14315--CG6683\n  CG6683--CG6683\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--CG14315\n  Argk--Mhc\n  Argk--Prm\n  Argk--Tm2\n  Argk--kdn\n  CG10949--CG6683\n  CG14315--Mhc\n  CG14315--Prm\n  CG14315--RyR\n  CG14315--Tm2\n  CG14315--kdn\n  CG14315--l(2)01289\n  Mhc--Prm\n  Mhc--Tm2\n  Mhc--kdn\n  Prm--Tm2\n  Prm--kdn\n  RyR--l(2)01289\n  Tm2--kdn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mhc--Tm2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Mhc--Mhc\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54\n\nTWO-HYBRID INTERACTIONS:\n  CDH1--CDH1\n  EED--ITGAE\n  ITGAE--TRIM54\n  TRIM25--TRIM25\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--CDH1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDH1--CDH1\n  EED--EED\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CDH1--CDH1\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--ITGAE\n  CUL3--RNF123\n  CUL3--TRIM25\n  EED--EED\n  ITGAE--METTL14\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TRIM25--TRIM25\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ITGAE--TRIM25\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CDH1--CDH1\n\nNETWORK SUMMARY: 8 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CDH1, CUL3, EED, ITGAE, METTL14, RNF123, TRIM25, TRIM54\n\nTWO-HYBRID INTERACTIONS:\n  CDH1--CDH1\n  EED--ITGAE\n  ITGAE--TRIM54\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-PURIFICATION INTERACTIONS:\n  CDH1--CDH1\n  CDH1--ITGAE\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDH1--CDH1\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  EED--EED\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CDH1--CDH1\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n\nFRET INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--CUL3\n  CUL3--ITGAE\n  CUL3--RNF123\n  CUL3--TRIM25\n  EED--EED\n  ITGAE--METTL14\n  ITGAE--RNF123\n  METTL14--METTL14\n  METTL14--METTL14\n\nPCA INTERACTIONS:\n  CUL3--CUL3\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CUL3--CUL3\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM25--TRIM25\n  TRIM54--TRIM54\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  TRIM25--TRIM25\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CDH1--CDH1\n  CDH1--TRIM25\n  CDH1--TRIM25\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  ITGAE--TRIM25\n  TRIM25--TRIM25\n\nCO-FRACTIONATION INTERACTIONS:\n  CUL3--TRIM25\n\nNETWORK SUMMARY: 8 proteins, 55 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10195, CG18012, CG3107, CG7025, Nop60B\n\nTWO-HYBRID INTERACTIONS:\n  CG10195--CG7025\n  CG18012--CG7025\n  CG7025--Nop60B\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10195, CG18012, CG3107, CG7025, Nop60B\n\nTWO-HYBRID INTERACTIONS:\n  CG10195--CG7025\n  CG18012--CG7025\n  CG3107--CG7025\n  CG7025--Nop60B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav\n- Network density: approximately 0.31\n- Hub proteins (highly connected): CG15022, sav\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15022, CG2258, Cip4, Dap160, Dys, NimB4, Ptp52F, Tsp, dock, sav\n\nTWO-HYBRID INTERACTIONS:\n  CG15022--CG2258\n  CG15022--Cip4\n  CG15022--Dap160\n  CG15022--Dys\n  CG15022--NimB4\n  CG15022--Ptp52F\n  CG15022--Tsp\n  CG15022--dock\n  CG15022--sav\n  Cip4--Cip4\n  dock--dock\n\nFRET INTERACTIONS:\n  sav--sav\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  sav--sav\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  sav--sav\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n\nTWO-HYBRID INTERACTIONS:\n  DIP1--Tango9\n  phr--phr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--Ost48\n  CG11857--OstDelta\n  CG11857--Sc2\n  CG11857--Surf4\n  CG11857--Tango9\n  CdsA--Ost48\n  CdsA--OstDelta\n  CdsA--Sc2\n  CdsA--Surf4\n  Ost48--Sec61alpha\n  Ost48--Surf4\n  Ost48--Tango9\n  OstDelta--Sc2\n  OstDelta--Sec61alpha\n  OstDelta--Tango9\n  Sc2--Sec61alpha\n  Sc2--Tango9\n  Sec61alpha--Surf4\n  Sec61alpha--Tango9\n  Surf4--Tango9\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11857, CdsA, DIP1, Ost48, OstDelta, Sc2, Sec61alpha, Surf4, Tango9, phr\n\nTWO-HYBRID INTERACTIONS:\n  DIP1--DIP1\n  DIP1--Tango9\n  Tango9--phr\n  phr--phr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11857--CdsA\n  CG11857--Ost48\n  CG11857--OstDelta\n  CG11857--Sc2\n  CG11857--Sec61alpha\n  CG11857--Surf4\n  CG11857--Tango9\n  CdsA--Ost48\n  CdsA--OstDelta\n  CdsA--Sc2\n  CdsA--Sec61alpha\n  CdsA--Surf4\n  CdsA--Tango9\n  Ost48--OstDelta\n  Ost48--Sc2\n  Ost48--Sec61alpha\n  Ost48--Surf4\n  Ost48--Tango9\n  OstDelta--Sc2\n  OstDelta--Sec61alpha\n  OstDelta--Surf4\n  OstDelta--Tango9\n  Sc2--Sec61alpha\n  Sc2--Surf4\n  Sc2--Tango9\n  Sec61alpha--Surf4\n  Sec61alpha--Tango9\n  Surf4--Tango9\n\nCO-FRACTIONATION INTERACTIONS:\n  DIP1--DIP1\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10749, CG14210, Lin29, Patronin, RpLP1\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG14210\n  CG14210--Lin29\n  CG14210--Patronin\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10749, CG14210, Lin29, Patronin, RpLP1\n\nTWO-HYBRID INTERACTIONS:\n  CG10749--CG14210\n  CG14210--Lin29\n  CG14210--Patronin\n  CG14210--RpLP1\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG18259--CG18259\n  CG18259--CG9356\n  CG9356--Mf\n  CG9356--oc\n  CG9356--srpk79D\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9356--Rab2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  srpk79D--srpk79D\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG18259--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG14232--CG9356\n  CG14232--CG9356\n  CG18259--CG18259\n  CG18259--CG9356\n  CG9356--Mf\n  CG9356--oc\n  CG9356--srpk79D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14232--CG9356\n  CG9356--Rab2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  srpk79D--srpk79D\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG18259--Tom20\n  CG18259--zuc\n  CG9356--Tom20\n  CG9356--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Rcd5, kermit, sinu\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG32447\n\nPredict the interactions for CG32447:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG32447--Rcd5\n  CG32447--kermit\n  CG32447--sinu"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12470, CG3085, CG6576, CG7231, Drep-1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 5 proteins, 2 interactions\n\nNew protein to integrate: CG10822\n\nPredict the interactions for CG10822:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10822--CG12470\n  CG10822--CG3085\n  CG10822--CG6576\n  CG10822--CG7231\n  CG10822--Drep-1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10298, hdm, mei-217, rec, spn-A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, hdm, mei-217, rec, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--rec\n  spn-A--spn-A\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hdm--rec\n  rec--spn-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-217--rec\n  mei-217--rec\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CFTR, KCNJ1, SLC9A3R1, SLC9A3R2\n\nTWO-HYBRID INTERACTIONS:\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  KCNJ1--SLC9A3R1\n  KCNJ1--SLC9A3R2\n  SLC9A3R1--SLC9A3R1\n  SLC9A3R1--SLC9A3R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  CFTR--KCNJ1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n\nFAR WESTERN INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R1\n  CFTR--SLC9A3R2\n  CFTR--SLC9A3R2\n  SLC9A3R1--SLC9A3R2\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  SLC9A3R1--SLC9A3R1\n\nNETWORK SUMMARY: 4 proteins, 34 interactions\n\nNew protein to integrate: SH3RF1\n\nPredict the interactions for SH3RF1:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  KCNJ1--SH3RF1\n  KCNJ1--SH3RF1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  KCNJ1--SH3RF1\n  SH3RF1--SH3RF1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10663--CG2199\n  CG10663--His3.3B\n  CG10663--Syp\n  CG10663--geminin\n  geminin--geminin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10663--Rtnl1\n  Rtnl1--Rtnl1\n  Rtnl1--Syp\n  Rtnl1--Syp\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10663, CG2199, Ef1alpha48D, His3.3B, Pax, Rtnl1, Syp, geminin, lcs\n\nTWO-HYBRID INTERACTIONS:\n  CG10663--CG2199\n  CG10663--Ef1alpha48D\n  CG10663--His3.3B\n  CG10663--Pax\n  CG10663--Syp\n  CG10663--geminin\n  CG10663--lcs\n  Rtnl1--Rtnl1\n  geminin--geminin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10663--Rtnl1\n  Rtnl1--Rtnl1\n  Rtnl1--Syp\n  Rtnl1--Syp\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10298, Mf, rec, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, Mf, rec, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--Mf\n  CG10298--rec\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10298--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG12470, CG15735, CG4328, crn, gammaSnap1, tup\n\nTWO-HYBRID INTERACTIONS:\n  gammaSnap1--gammaSnap1\n\nNETWORK SUMMARY: 6 proteins, 1 interactions\n\nNew protein to integrate: CG11883\n\nPredict the interactions for CG11883:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11883--CG12470\n  CG11883--CG12470\n  CG11883--CG15735\n  CG11883--CG4328\n  CG11883--crn\n  CG11883--gammaSnap1\n  CG11883--tup"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n\nTWO-HYBRID INTERACTIONS:\n  CG4511--CG8507\n  CG4511--Cpr35B\n  CG4511--MED22\n  CG4511--Pka-R1\n  CG4511--Pka-R1\n  CG4511--ssp3\n  CG4511--sta\n  Pka-R1--Pka-R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pka-R1--Pka-R1\n\nNETWORK SUMMARY: 7 proteins, 9 interactions\n\nNew protein to integrate: CG10510\n\nPredict the interactions for CG10510:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10510--CG4511"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG14543\n  CG14153--CG14543\n  CG14543--CG42565\n  CG14543--HLH4C\n  CG14543--N\n  CG14543--RpS26\n  CG14543--Sps2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14543--Rae1\n  CG14543--Treh\n\nPCA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bap60, CG14153, CG14543, CG42565, HLH4C, N, Rae1, RpS26, Sps2, Treh\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG14543\n  CG14153--CG14543\n  CG14543--CG42565\n  CG14543--HLH4C\n  CG14543--N\n  CG14543--RpS26\n  CG14543--Sps2\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14543--Rae1\n  CG14543--Treh\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  Rae1--Treh\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 10 proteins, 130 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: ASIC2, ASIC3, DLG4, GOPC, LIN7B, MAGI1, PRKACA\n\nTWO-HYBRID INTERACTIONS:\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  DLG4--DLG4\n  GOPC--GOPC\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--ASIC3\n  ASIC3--DLG4\n  ASIC3--GOPC\n  ASIC3--LIN7B\n  ASIC3--MAGI1\n  DLG4--DLG4\n  DLG4--LIN7B\n  GOPC--GOPC\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ASIC3--PRKACA\n  PRKACA--PRKACA\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PRKACA--PRKACA\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  MAGI1--MAGI1\n\nNETWORK SUMMARY: 7 proteins, 17 interactions\n\nNew protein to integrate: STOM\n\nPredict the interactions for STOM:"
-      },
-      {
-        "role": "assistant",
-        "content": "RECONSTITUTED COMPLEX INTERACTIONS:\n  STOM--STOM\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ASIC2--STOM\n  ASIC3--STOM\n\nTWO-HYBRID INTERACTIONS:\n  STOM--STOM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  STOM--STOM"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10424, Dcp1, rti\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  rti--rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10424--CG10424\n\nNETWORK SUMMARY: 3 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10424, Dcp1, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10424--CG10424\n  CG10424--Dcp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10424--rti\n  rti--rti\n\nNETWORK SUMMARY: 3 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11337, CG31121, CG7386, Tom20, a, sol, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG31121, CG7386, Tom20, a, sol, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG11337--CG7386\n  CG11337--a\n  CG11337--sol\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--Tom20\n  CG11337--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1129, CG6576, CG8207, CycK, step\n\nTWO-HYBRID INTERACTIONS:\n  CG6576--CG8207\n  CG8207--CycK\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1129, CG6576, CG8207, CycK, step\n\nTWO-HYBRID INTERACTIONS:\n  CG1129--CG8207\n  CG1129--CG8207\n  CG6576--CG8207\n  CG8207--CycK\n  CG8207--step\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Anp, CG11576, CG7910, CSN8, Pp2A-29B\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG7910, CG11576\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Anp, CG11576, CG7910, CSN8, Pp2A-29B\n\nTWO-HYBRID INTERACTIONS:\n  Anp--CG7910\n  CG11576--CG7910\n  CG7910--CSN8\n  CG7910--Pp2A-29B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG13032, CG17666, CG3213, CG6972, CG7046, HLH4C, Lim3, Rbp, TFAM\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG6972\n  CG13032--CG17666\n  CG13032--CG6972\n  CG17666--CG6972\n  CG3213--CG6972\n  CG6972--CG7046\n  CG6972--HLH4C\n  CG6972--Lim3\n  CG6972--Rbp\n  CG6972--TFAM\n  HLH4C--Lim3\n\nPCA INTERACTIONS:\n  CG7046--CG7046\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14968, CG16817, Chd64, Cht9\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG14968, Chd64\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14968, CG16817, Chd64, Cht9\n\nTWO-HYBRID INTERACTIONS:\n  CG14968--Cht9\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14968--CG16817\n  CG14968--Chd64\n  CG16817--Chd64\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11200, CG14053, CG14232, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG14053--CG33144\n  CG14053--skpF\n  CG14232--CG33144\n  CG33144--CG34113\n  CG33144--Prm\n  CG33144--bocksbeutel\n  CG33144--skpF\n  CG33144--spartin\n\nNETWORK SUMMARY: 9 proteins, 9 interactions\n\nNew protein to integrate: CG18259\n\nPredict the interactions for CG18259:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG18259--CG18259\n  CG18259--CG33144\n  CG18259--Prm"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8368, MCPH1, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  Sgt--Sgt\n\nNETWORK SUMMARY: 3 proteins, 1 interactions\n\nNew protein to integrate: CG11381\n\nPredict the interactions for CG11381:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11381--CG8368\n  CG11381--MCPH1\n  CG11381--Sgt"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11560, CG4229, CG7967, RpS7, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG11560--CG11560\n  CG11560--CG4229\n  CG11560--CG7967\n  CG11560--krz\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11560, CG4229, CG7967, RpS7, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG11560--CG11560\n  CG11560--CG4229\n  CG11560--CG7967\n  CG11560--RpS7\n  CG11560--krz\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3499, CG4335, Tig, ci, pgant3\n\nTWO-HYBRID INTERACTIONS:\n  CG3499--Tig\n  CG4335--CG4335\n  Tig--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Tig--pgant3\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3499, CG4335, Tig, ci, pgant3\n\nTWO-HYBRID INTERACTIONS:\n  CG3499--Tig\n  CG4335--CG4335\n  CG4335--Tig\n  Tig--ci\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Tig--pgant3\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10154, CG17107, CG43896, CG6707, Usp7, cact, gce, odd\n\nTWO-HYBRID INTERACTIONS:\n  CG10154--CG43896\n  CG10154--gce\n  CG17107--CG43896\n  CG43896--CG6707\n  CG43896--Usp7\n  CG43896--cact\n  CG43896--gce\n  CG43896--odd\n  cact--cact\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  cact--cact\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Usp7--Usp7\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Usp7--Usp7\n\nNETWORK SUMMARY: 8 proteins, 12 interactions\n\nNew protein to integrate: sty\n\nPredict the interactions for sty:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG43896--sty"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12081, Ntf-2, Ntf-2r, Scm\n- Network density: approximately 1.33\n- Hub proteins (highly connected): Scm, Ntf-2r\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12081, Ntf-2, Ntf-2r, Scm\n\nTWO-HYBRID INTERACTIONS:\n  CG12081--Ntf-2r\n  Ntf-2--Ntf-2\n  Ntf-2--Ntf-2r\n  Ntf-2r--Scm\n  Scm--Scm\n  Scm--Scm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Scm--Scm\n  Scm--Scm\n\nNETWORK SUMMARY: 4 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16812, CG2709, CG3281, CG45068, CG5089, CG7386, DNApol-delta, Pih1D1, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG16812--CG16812\n  CG16812--Pih1D1\n  CG16812--fs(2)ltoPP43\n  CG2709--CG2709\n  CG2709--fs(2)ltoPP43\n  CG3281--CG7386\n  CG3281--fs(2)ltoPP43\n  CG45068--fs(2)ltoPP43\n  CG5089--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  DNApol-delta--fs(2)ltoPP43\n  Pih1D1--fs(2)ltoPP43\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG7407, Dmn, Hrs, Rab11, Rab14, Rab5, Tbc1d15-17, Tom20, spartin\n\nTWO-HYBRID INTERACTIONS:\n  Atg8b--Tbc1d15-17\n  Hrs--Tbc1d15-17\n  Tbc1d15-17--spartin\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7407--Dmn\n  CG7407--Tbc1d15-17\n  Dmn--Tbc1d15-17\n  Rab11--Tbc1d15-17\n  Rab14--Tbc1d15-17\n  Rab5--Tbc1d15-17\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dmn--Rab5\n  Rab11--Rab5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rab5--Tbc1d15-17\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Rab11--Tom20\n  Tbc1d15-17--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO1, CG13005, CG14931, CG15631, CG9062, Cpr50Ca, Tsp, krz\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--CG14931\n  CG13005--CG14931\n  CG14931--CG15631\n  CG14931--Cpr50Ca\n  CG14931--Tsp\n  CG14931--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14931--CG9062\n\nNETWORK SUMMARY: 8 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG11417--RpS11\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Pi3K21B\n  CG11417--Rtnl1\n  CG11417--Rtnl1\n  CG11417--Tsc1\n  CG11417--phl\n  CG11417--rictor\n  RpS11--Tsc1\n  Rtnl1--Rtnl1\n  Tsc1--gig\n  Tsc1--gig\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG11417--RpS11\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Pi3K21B\n  CG11417--Rtnl1\n  CG11417--Rtnl1\n  CG11417--Tsc1\n  CG11417--dos\n  CG11417--gig\n  CG11417--phl\n  CG11417--rictor\n  RpS11--Tsc1\n  RpS11--gig\n  Rtnl1--Rtnl1\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11417--kel\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10208, CG7564, Sxl\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG10208--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n  Sxl--Sxl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Sxl--Sxl\n\nNETWORK SUMMARY: 3 proteins, 10 interactions\n\nNew protein to integrate: Fadd\n\nPredict the interactions for Fadd:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10208--Fadd"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14684, IP3K2, Rbp6, Tm1, Ubx, lark, yuri\n\nTWO-HYBRID INTERACTIONS:\n  CG14684--yuri\n  IP3K2--yuri\n  Rbp6--yuri\n  Tm1--Tm1\n  Ubx--yuri\n  lark--yuri\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tm1--yuri\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm1--Tm1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Tm1--Tm1\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n\nTWO-HYBRID INTERACTIONS:\n  Acp62F--CG5866\n  CG13196--CG5866\n  CG17666--CG5866\n  CG43367--CG5866\n  CG5866--NimC1\n  CG5866--PlexA\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11269, Cp38, spi\n\nNETWORK SUMMARY: 3 proteins, 0 interactions\n\nNew protein to integrate: CG13272\n\nPredict the interactions for CG13272:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11269--CG13272\n  CG13272--Cp38\n  CG13272--spi"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG6683, CG10949\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10585, CG10949, CG14315, CG6683, CG8026, CG8560, Fer1HCH\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG10949--Fer1HCH\n  CG14315--CG6683\n  CG6683--CG6683\n  CG6683--Fer1HCH\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10585--CG10949\n  CG10585--CG6683\n  CG10585--CG8026\n  CG10949--CG6683\n  CG10949--CG8026\n  CG10949--CG8560\n  CG6683--CG8026\n  CG6683--CG8560\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10809, Cip4, Nup214, Nup58, l(3)05822"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10809, Cip4, Nup214, Nup58, l(3)05822\n\nTWO-HYBRID INTERACTIONS:\n  CG10809--Cip4\n  CG10809--Cip4\n  CG10809--Nup214\n  CG10809--Nup58\n  CG10809--l(3)05822\n  Cip4--Cip4\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Akt1, Rtnl1, beta-Spec, betaggt-II, eIF-4a, htl, nst, step, sxc\n\nTWO-HYBRID INTERACTIONS:\n  Akt1--Akt1\n  Rtnl1--Rtnl1\n  beta-Spec--nst\n  betaggt-II--nst\n  eIF-4a--nst\n  nst--step\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--eIF-4a\n  Akt1--nst\n  Rtnl1--Rtnl1\n  Rtnl1--nst\n  Rtnl1--nst\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  nst--sxc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  htl--nst\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG14957, Hakai, upSET\n\nTWO-HYBRID INTERACTIONS:\n  CG14957--Hakai\n  CG14957--upSET\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: Nha1\n\nPredict the interactions for Nha1:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14957--Nha1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG6683\n  CG14315--CG6683\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--CG14315\n  Argk--kdn\n  CG14315--Mhc\n  CG14315--Prm\n  CG14315--Tm2\n  CG14315--l(2)01289\n  Mhc--Prm\n  Mhc--Tm2\n  Mhc--kdn\n  Prm--Tm2\n  Prm--kdn\n  RyR--l(2)01289\n  Tm2--kdn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mhc--Tm2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Mhc--Mhc\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Argk, CG10949, CG14315, CG6683, Mhc, Prm, RyR, Tm2, kdn, l(2)01289\n\nTWO-HYBRID INTERACTIONS:\n  CG10949--CG14315\n  CG10949--CG6683\n  CG14315--CG6683\n  CG6683--CG6683\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Argk--CG14315\n  Argk--Mhc\n  Argk--Prm\n  Argk--Tm2\n  Argk--kdn\n  CG10949--CG6683\n  CG14315--Mhc\n  CG14315--Prm\n  CG14315--RyR\n  CG14315--Tm2\n  CG14315--kdn\n  CG14315--l(2)01289\n  Mhc--Prm\n  Mhc--Tm2\n  Mhc--kdn\n  Prm--Tm2\n  Prm--kdn\n  RyR--l(2)01289\n  Tm2--kdn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mhc--Tm2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Mhc--Mhc\n\nCO-FRACTIONATION INTERACTIONS:\n  Tm2--Tm2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10321, CG15116, Oxp, rhi, rti\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG15116, rhi\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG15116, Oxp, rhi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG15116\n  CG15116--Oxp\n  CG15116--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15116--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atg8b, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n\nTWO-HYBRID INTERACTIONS:\n  CG4622--Ire1\n  Ire1--Vha36-3\n  Ire1--ZnT41F\n  Ire1--nemy\n  ZnT41F--ZnT41F\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Ire1--Xbp1\n  Ire1--ninaE\n  Xbp1--ninaE\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n  Ire1--Xbp1\n  Ire1--bsk\n  Xbp1--bsk\n  bsk--ninaE\n\nFRET INTERACTIONS:\n  Xbp1--Xbp1\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG13541\n\nPredict the interactions for CG13541:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13541--Ire1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1041, CG4168, CG7200, Hakai, Tango10, Tom20, TwdlE, ebd1, kin17, rpr\n\nTWO-HYBRID INTERACTIONS:\n  CG1041--CG4168\n  CG1041--CG7200\n  CG1041--Hakai\n  CG1041--Tango10\n  CG1041--TwdlE\n  CG1041--ebd1\n  CG1041--kin17\n  CG1041--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  rpr--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  rpr--rpr\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG1041--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Atg1, CG10103, CG12082, RpS27A, th\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--CG12082\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg1--CG12082\n  CG12082--RpS27A\n  RpS27A--th\n  th--th\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Atg1--Atg1\n  Atg1--Atg1\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg1--th\n  CG12082--th\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Atg1--CG12082\n\nCO-LOCALIZATION INTERACTIONS:\n  Atg1--CG12082\n\nNETWORK SUMMARY: 5 proteins, 13 interactions\n\nNew protein to integrate: okr\n\nPredict the interactions for okr:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG12082--okr"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG30324, CG4461, Hsp60, HtrA2, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG30324--CG4461\n  CG4461--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4461--Hsp60\n  CG4461--HtrA2\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: CG10051\n\nPredict the interactions for CG10051:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10051--CG4461"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp10, CG12042, CG15631, CG17107, Dmn, Tom20, betaTub60D, dyn-p25, l(2)06496, l(2)37Ce\n\nTWO-HYBRID INTERACTIONS:\n  CG15631--l(2)37Ce\n  CG17107--l(2)37Ce\n  betaTub60D--l(2)37Ce\n  dyn-p25--l(2)37Ce\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Arp10--CG12042\n  Arp10--Dmn\n  Arp10--dyn-p25\n  Arp10--l(2)06496\n  Arp10--l(2)37Ce\n  CG12042--Dmn\n  CG12042--dyn-p25\n  CG12042--l(2)06496\n  CG12042--l(2)37Ce\n  Dmn--dyn-p25\n  Dmn--l(2)06496\n  Dmn--l(2)37Ce\n  l(2)06496--l(2)37Ce\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG12042--Tom20\n  Tom20--Tom20\n  Tom20--l(2)37Ce\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG31961, CG3332, CG5734, Prat, Prat2, RhoGAP68F, ald, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG31961--Prat2\n  CG3332--Prat2\n  CG5734--Prat2\n  Prat2--RhoGAP68F\n  Prat2--ald\n  Prat2--nej\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prat--Prat2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  ald--ald\n  nej--nej\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ald--ald\n\nNETWORK SUMMARY: 8 proteins, 10 interactions\n\nNew protein to integrate: Pak\n\nPredict the interactions for Pak:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Pak--Prat2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu\n- Network density: approximately 0.71\n- Hub proteins (highly connected): MAGE, mei-41\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C1GalTA, CG11329, CG13142, CG15136, MAGE, mei-41, spn-A, tefu\n\nTWO-HYBRID INTERACTIONS:\n  C1GalTA--MAGE\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n  CG15136--MAGE\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  MAGE--mei-41\n  MAGE--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n  mei-41--tefu\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  MAGE--spn-A\n  mei-41--tefu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG11329--MAGE\n  CG13142--MAGE\n  CG13142--MAGE\n\nNETWORK SUMMARY: 8 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo\n- Network density: approximately 0.57\n- Hub proteins (highly connected): polo, ko\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--ko\n  CG8407--ko\n  Cdlc2--ko\n  cactin--ko\n  ctp--ko\n  ko--polo\n  ko--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10841\n  CG10465--CG9578\n  CG10465--Dref\n  CG10465--Snr1\n  CG9578--CG9578\n  Dref--Dref\n  Dref--Dref\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10465--Leash\n  Dref--Dref\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG10841, CG15547, CG9578, Dref, Leash, Mob4, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG10841\n  CG10465--CG15547\n  CG10465--CG9578\n  CG10465--Dref\n  CG10465--Mob4\n  CG10465--Snr1\n  CG9578--CG9578\n  Dref--Dref\n  Dref--Dref\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10465--Leash\n  Dref--Dref\n\nNETWORK SUMMARY: 9 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10470, CG1444, CG33303, CG42369, dl, sky\n\nTWO-HYBRID INTERACTIONS:\n  CG10470--CG42369\n  CG10470--dl\n  CG10470--sky\n  dl--dl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG1444\n  CG10470--CG33303\n  CG1444--CG33303\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dl--dl\n  dl--dl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dl--dl\n\nFRET INTERACTIONS:\n  dl--dl\n\nNETWORK SUMMARY: 6 proteins, 11 interactions\n\nNew protein to integrate: CG14482\n\nPredict the interactions for CG14482:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG10470--CG14482\n  CG1444--CG14482\n  CG14482--CG33303"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: BPY2, MAP1S, PPIA, UBE3A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BPY2, MAP1S, PPIA, UBE3A\n\nTWO-HYBRID INTERACTIONS:\n  BPY2--MAP1S\n  BPY2--UBE3A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BPY2--MAP1S\n  PPIA--PPIA\n  PPIA--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BPY2--UBE3A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  UBE3A--UBE3A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  UBE3A--UBE3A\n  UBE3A--UBE3A\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  BPY2--PPIA\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  PPIA--PPIA\n  PPIA--PPIA\n\nNETWORK SUMMARY: 4 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Art8, CG12081, CG6380, EloB, EloC, corto, homer, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG6380--EloB\n  EloB--EloC\n  EloB--homer\n  EloC--corto\n  corto--corto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Art8--EloB\n  CG12081--EloB\n  CG12081--EloC\n  EloB--EloC\n  EloB--rti\n  rti--rti\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  EloB--corto\n  EloC--corto\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  EloB--EloC\n  EloB--corto\n  EloC--corto\n  corto--corto\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 8 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  AnxB11--CG12857\n  AnxB11--CG13321\n  AnxB11--CG2199\n  AnxB11--Rm62\n  AnxB11--Srp68\n  CG10465--CG10465\n  CG10465--CG10465\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AnxB11, CG10465, CG12857, CG13321, CG14408, CG2199, Hrs, Rm62, Srp68, mei-S332\n\nTWO-HYBRID INTERACTIONS:\n  AnxB11--CG10465\n  AnxB11--CG12857\n  AnxB11--CG13321\n  AnxB11--CG14408\n  AnxB11--CG2199\n  AnxB11--Hrs\n  AnxB11--Rm62\n  AnxB11--Srp68\n  AnxB11--mei-S332\n  CG10465--CG10465\n  CG10465--CG10465\n  CG2199--Srp68\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Rm62--Rm62\n  mei-S332--mei-S332\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Ada2b, CG6272, CG6470, Jafrac1, Nnf1a, Pat1, Traf-like, drm, org-1\n\nTWO-HYBRID INTERACTIONS:\n  Ada2b--Ada2b\n  Ada2b--CG6470\n  CG6272--CG6470\n  CG6272--drm\n  CG6470--Jafrac1\n  CG6470--Nnf1a\n  CG6470--Pat1\n  CG6470--Traf-like\n  CG6470--drm\n  CG6470--org-1\n  Pat1--Traf-like\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ada2b--Ada2b\n\nNETWORK SUMMARY: 9 proteins, 12 interactions\n\nNew protein to integrate: CG17744\n\nPredict the interactions for CG17744:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG17744--CG6470"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12081, Ntf-2, Ntf-2r, Scm\n\nTWO-HYBRID INTERACTIONS:\n  CG12081--Ntf-2r\n  Ntf-2--Ntf-2\n  Ntf-2--Ntf-2r\n  Ntf-2r--Scm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Scm--Scm\n  Scm--Scm\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12081, Ntf-2, Ntf-2r, Scm\n\nTWO-HYBRID INTERACTIONS:\n  CG12081--Ntf-2r\n  Ntf-2--Ntf-2\n  Ntf-2--Ntf-2r\n  Ntf-2r--Scm\n  Scm--Scm\n  Scm--Scm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Scm--Scm\n  Scm--Scm\n\nNETWORK SUMMARY: 4 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5343, CG9902, Galt, TTLL3B\n- Network density: approximately 0.50\n- Hub proteins (highly connected): TTLL3B, Galt\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5343, CG9902, Galt, TTLL3B\n\nTWO-HYBRID INTERACTIONS:\n  CG9902--TTLL3B\n  Galt--TTLL3B\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG5343--TTLL3B\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG14372, beat-IIa, dm, side\n\nTWO-HYBRID INTERACTIONS:\n  beat-IIa--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14372--beat-IIa\n  CG14372--beat-IIa\n  beat-IIa--side\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14372, beat-IIa, dm, side\n\nTWO-HYBRID INTERACTIONS:\n  beat-IIa--dm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG14372--beat-IIa\n  CG14372--beat-IIa\n  beat-IIa--side\n  beat-IIa--side\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11412, CG4065, CG5009, rols\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG4065, CG11412\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5009, rols\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG4065--CG5009\n  CG4065--rols\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG4511, Pka-R1\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10510, CG4511, CG8507, Cpr35B, MED22, Pka-R1, ssp3, sta\n\nTWO-HYBRID INTERACTIONS:\n  CG10510--CG4511\n  CG4511--CG8507\n  CG4511--Cpr35B\n  CG4511--MED22\n  CG4511--Pka-R1\n  CG4511--Pka-R1\n  CG4511--ssp3\n  CG4511--sta\n  Pka-R1--Pka-R1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pka-R1--Pka-R1\n\nNETWORK SUMMARY: 8 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n- Network density: approximately 0.27\n- Hub proteins (highly connected): Tango10, spn-A\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG1041, CG10979, Cpr64Ad, Fer3HCH, Su(var)2-10, Tango10, cup, spn-A, vari\n\nTWO-HYBRID INTERACTIONS:\n  C15--Tango10\n  CG1041--Tango10\n  CG10979--Tango10\n  Cpr64Ad--Tango10\n  Fer3HCH--Fer3HCH\n  Fer3HCH--Tango10\n  Su(var)2-10--Tango10\n  Su(var)2-10--spn-A\n  Tango10--cup\n  Tango10--spn-A\n  Tango10--vari\n  spn-A--spn-A\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1091, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--Rpt6R\n  CG5026--Rpt6R\n  Ibf2--Ibf2\n  Ibf2--Rpt6R\n  Rlip--Rpt6R\n  Rpt6R--bigmax\n  Rpt6R--fidipidine\n  Rpt6R--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpt6R--atl\n  atl--atl\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  atl--atl\n  atl--atl\n\nCO-FRACTIONATION INTERACTIONS:\n  atl--atl\n\nFRET INTERACTIONS:\n  atl--atl\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  atl--atl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  atl--atl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  atl--atl\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: CG15124\n\nPredict the interactions for CG15124:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG15124--Rpt6R"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl\n- Network density: approximately 1.10\n- Hub proteins (highly connected): rl, corto\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5110, CG5189, Dpy-30L2, Dsor1, Rm62, corto, rl\n\nTWO-HYBRID INTERACTIONS:\n  CG5110--CG5189\n  CG5110--CG5189\n  CG5110--Dpy-30L2\n  CG5110--Rm62\n  CG5110--corto\n  Rm62--Rm62\n  corto--corto\n  rl--rl\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dsor1--rl\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dsor1--rl\n  Dsor1--rl\n  Dsor1--rl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG5110--Dsor1\n  CG5110--corto\n  CG5110--rl\n  CG5110--rl\n  Dsor1--rl\n  Rm62--Rm62\n  corto--corto\n  corto--rl\n  corto--rl\n\nCO-LOCALIZATION INTERACTIONS:\n  Dsor1--rl\n\nFRET INTERACTIONS:\n  corto--corto\n\nNETWORK SUMMARY: 7 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11337, CG31121, CG7386, Tom20, a, sol, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG11337--CG7386\n  CG11337--a\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--zuc\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG31121, CG7386, Tom20, a, sol, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG11337--CG7386\n  CG11337--a\n  CG11337--sol\n  CG7386--CG7386\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11337--Tom20\n  CG11337--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 7 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11266, CG13871, CG9975, Clp, CstF-64, Fip1, Neto\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--Fip1\n  CG13871--Fip1\n  CG9975--Fip1\n  Clp--Fip1\n  Fip1--Neto\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Clp--CstF-64\n  CstF-64--Fip1\n\nNETWORK SUMMARY: 7 proteins, 8 interactions\n\nNew protein to integrate: Myo10A\n\nPredict the interactions for Myo10A:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Fip1--Myo10A\n  Fip1--Myo10A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fip1--Myo10A"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg\n- Network density: approximately 0.60\n- Hub proteins (highly connected): osk, CG15185\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AP-1gamma, CG12115, CG15185, CG7786, osk, sgg\n\nTWO-HYBRID INTERACTIONS:\n  AP-1gamma--CG15185\n  CG12115--CG15185\n  CG15185--CG7786\n  CG15185--osk\n  CG15185--sgg\n\nFRET INTERACTIONS:\n  CG7786--CG7786\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  osk--osk\n  osk--osk\n\nCO-FRACTIONATION INTERACTIONS:\n  osk--osk\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n- Network density: approximately 0.71\n- Hub proteins (highly connected): APP, DVL2\n- Total interactions: approximately 32"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: APOB, APP, CAPG, DVL2, KPNA2, NPLOC4, NUDT9, SLC2A2, ST3GAL2, TRUB1\n\nTWO-HYBRID INTERACTIONS:\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  APOB--APOB\n  APOB--APP\n  DVL2--DVL2\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--APP\n  APP--KPNA2\n  APP--NUDT9\n  APP--SLC2A2\n  APP--TRUB1\n  DVL2--DVL2\n  KPNA2--SLC2A2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  APOB--SLC2A2\n  APP--APP\n  CAPG--SLC2A2\n  CAPG--TRUB1\n  DVL2--DVL2\n  DVL2--SLC2A2\n  NPLOC4--SLC2A2\n  NUDT9--SLC2A2\n  NUDT9--TRUB1\n  SLC2A2--ST3GAL2\n  SLC2A2--TRUB1\n  SLC2A2--TRUB1\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  APOB--APP\n\nCO-PURIFICATION INTERACTIONS:\n  APP--APP\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10164, CG12477, CG13157, CG14089, CG34347, CG4270, Set2, br, kni\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG4270\n  CG10164--CG4270\n  CG12477--CG4270\n  CG13157--CG4270\n  CG14089--CG4270\n  CG34347--CG4270\n  CG4270--Set2\n  CG4270--br\n  CG4270--kni\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  br--br\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: CG10151\n\nPredict the interactions for CG10151:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10151--CG4270"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG33144, CG18259\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11200, CG14053, CG14232, CG18259, CG33144, CG34113, Prm, bocksbeutel, skpF, spartin\n\nTWO-HYBRID INTERACTIONS:\n  CG11200--CG33144\n  CG14053--CG33144\n  CG14053--skpF\n  CG14232--CG33144\n  CG18259--CG18259\n  CG18259--CG33144\n  CG18259--Prm\n  CG33144--CG34113\n  CG33144--Prm\n  CG33144--bocksbeutel\n  CG33144--skpF\n  CG33144--spartin\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG15293, CG5013, TfIIEalpha, TfIIEbeta"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15293, CG5013, TfIIEalpha, TfIIEbeta\n\nTWO-HYBRID INTERACTIONS:\n  CG15293--TfIIEalpha\n  CG5013--TfIIEalpha\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  TfIIEalpha--TfIIEbeta\n  TfIIEalpha--TfIIEbeta\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arp5, CG13022, hh, ptc, rasp, rho, spi"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp5, CG13022, hh, ptc, rasp, rho, spi\n\nTWO-HYBRID INTERACTIONS:\n  Arp5--rasp\n  CG13022--rasp\n  ptc--ptc\n  ptc--ptc\n  rho--rho\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--rasp\n  rasp--rho\n  rho--spi\n  rho--spi\n  rho--spi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  hh--ptc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hh--hh\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  hh--ptc\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hh--rasp\n  rasp--spi\n  rasp--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n  rho--spi\n\nNETWORK SUMMARY: 7 proteins, 37 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev\n\nTWO-HYBRID INTERACTIONS:\n  CG8128--Nf-YB\n  Nf-YA--Nf-YC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YC\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Nf-YA--phl\n  Nf-YB--phl\n  Nf-YB--sev\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev\n\nTWO-HYBRID INTERACTIONS:\n  CG8128--Nf-YB\n  Mes4--Nf-YB\n  Nf-YA--Nf-YA\n  Nf-YA--Nf-YC\n  Nf-YB--Nf-YC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YC\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Nf-YA--phl\n  Nf-YA--sev\n  Nf-YB--phl\n  Nf-YB--sev\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG13822, TFAM\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C\n\nTWO-HYBRID INTERACTIONS:\n  CG13822--CG14317\n  CG13822--Rca1\n  CG13822--TFAM\n  CG13822--ago\n  CG13822--gammaTub37C\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1635, Pbgs, Tim17a2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, Pbgs, Tim17a2\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--Pbgs\n  Pbgs--Pbgs\n  Pbgs--Tim17a2\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bet3, SIDL, Trs20, Trs31, gry, smo\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  Trs20--Trs31\n  Trs20--Trs31\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trs20--smo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 6 proteins, 26 interactions\n\nNew protein to integrate: Cpr64Ac\n\nPredict the interactions for Cpr64Ac:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cpr64Ac--Trs20"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n\nTWO-HYBRID INTERACTIONS:\n  CG11138--CG15865\n  CG11380--CG15865\n  CG11380--TwdlE\n  CG13067--CG15865\n  CG15865--CG42565\n  CG15865--CG8907\n  CG15865--CG8927\n  CG15865--Hakai\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11138, CG11380, CG13067, CG15865, CG42565, CG8907, CG8927, Cpr72Ea, Hakai, TwdlE\n\nTWO-HYBRID INTERACTIONS:\n  CG11138--CG15865\n  CG11380--CG13067\n  CG11380--CG15865\n  CG11380--TwdlE\n  CG13067--CG15865\n  CG15865--CG42565\n  CG15865--CG8907\n  CG15865--CG8927\n  CG15865--Cpr72Ea\n  CG15865--Hakai\n  CG15865--TwdlE\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls\n- Network density: approximately 0.75\n- Hub proteins (highly connected): dlg1, CG9850\n- Total interactions: approximately 21"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls\n\nTWO-HYBRID INTERACTIONS:\n  CG33017--CG9850\n  CG9850--Crk\n  CG9850--E5\n  CG9850--Grip91\n  CG9850--dlg1\n  dlg1--dlg1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  CG9850--wls\n  wg--wls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  wg--wls\n  wg--wls\n\nCO-FRACTIONATION INTERACTIONS:\n  dlg1--dlg1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  dlg1--dlg1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG9850--wg\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG10513, Prp3\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11726, CG13168, Cwc25, Prp3, Rlb1\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG10513--CG13168\n  CG10513--Cwc25\n  CG10513--Prp3\n  CG10513--Rlb1\n  Prp3--Prp3\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg8b, CG13541, CG4622, Ire1, Vha36-3, Xbp1, ZnT41F, bsk, nemy, ninaE\n\nTWO-HYBRID INTERACTIONS:\n  CG13541--Ire1\n  CG4622--Ire1\n  Ire1--Vha36-3\n  Ire1--ZnT41F\n  Ire1--nemy\n  ZnT41F--ZnT41F\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Ire1--Xbp1\n  Ire1--ninaE\n  Xbp1--ninaE\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n  Ire1--Xbp1\n  Ire1--bsk\n  Xbp1--bsk\n  bsk--ninaE\n\nFRET INTERACTIONS:\n  Xbp1--Xbp1\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acer, Akt1, AnxB10, CG5611, CG5844, Prx2540-2, Tom20, ade5, spz3\n\nTWO-HYBRID INTERACTIONS:\n  Acer--CG5844\n  Akt1--Akt1\n  CG5611--CG5844\n  CG5844--spz3\n  ade5--ade5\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Akt1--CG5844\n  AnxB10--CG5844\n  AnxB10--Prx2540-2\n  CG5844--Prx2540-2\n  CG5844--ade5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Akt1--Akt1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG5844--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG5144, Cyp6a9\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14478, CG3842, CG5144, Cyp6a9, Jheh1, bab2, bic\n\nTWO-HYBRID INTERACTIONS:\n  CG14478--CG5144\n  CG3842--CG5144\n  CG5144--Cyp6a9\n  CG5144--Jheh1\n  CG5144--bab2\n  CG5144--bic\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10265, FoxP, lola\n\nTWO-HYBRID INTERACTIONS:\n  FoxP--FoxP\n  FoxP--FoxP\n  lola--lola\n  lola--lola\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  lola--lola\n  lola--lola\n\nNETWORK SUMMARY: 3 proteins, 6 interactions\n\nNew protein to integrate: CG17625\n\nPredict the interactions for CG17625:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10265--CG17625\n  CG17625--FoxP\n  CG17625--lola"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A\n\nTWO-HYBRID INTERACTIONS:\n  CDK2--S\n  IFITM2--KRTAP1-1\n  IFITM2--UPF3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAND1--CAND1\n  CDK2--CDK2\n  DDX58--DDX58\n  DDX58--DDX58\n  IFITM2--S\n  ORF3a--ORF3a\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CDK2--CDK2\n  CDK2--CDK2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CAND1--CDK2\n  CAND1--S\n  CDK2--CDK2\n  CDK2--CDK2\n  CDK2--IFITM2\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--SREBF1\n\nFRET INTERACTIONS:\n  SREBF1--SREBF1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IFITM2--ORF3a\n  ORF3a--SREBF1\n  S--S\n  S--S\n  S--SREBF1\n\nNEGATIVE GENETIC INTERACTIONS:\n  IFITM2--SREBF1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--IFITM2\n\nCO-LOCALIZATION INTERACTIONS:\n  IFITM2--S\n\nPCA INTERACTIONS:\n  ORF3a--ORF3a\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CAND1, CDK2, DDX58, IFITM2, KRTAP1-1, ORF3a, S, SLC10A1, SREBF1, UPF3A\n\nTWO-HYBRID INTERACTIONS:\n  CDK2--S\n  IFITM2--KRTAP1-1\n  IFITM2--S\n  IFITM2--SLC10A1\n  IFITM2--UPF3A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CAND1--CAND1\n  CDK2--CDK2\n  DDX58--DDX58\n  DDX58--DDX58\n  IFITM2--S\n  ORF3a--ORF3a\n  ORF3a--S\n  ORF3a--S\n  S--S\n  S--S\n  S--S\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CDK2--CDK2\n  CDK2--CDK2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CAND1--CDK2\n  CAND1--IFITM2\n  CAND1--S\n  CDK2--CDK2\n  CDK2--CDK2\n  CDK2--IFITM2\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--SREBF1\n\nFRET INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--S\n  S--S\n  SREBF1--SREBF1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  DDX58--DDX58\n  DDX58--DDX58\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROTEIN-PEPTIDE INTERACTIONS:\n  S--S\n  S--S\n  S--S\n\nCO-PURIFICATION INTERACTIONS:\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n  S--S\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IFITM2--ORF3a\n  ORF3a--ORF3a\n  ORF3a--ORF3a\n  ORF3a--SREBF1\n  S--S\n  S--S\n  S--SREBF1\n\nNEGATIVE GENETIC INTERACTIONS:\n  IFITM2--SREBF1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX58--IFITM2\n\nCO-LOCALIZATION INTERACTIONS:\n  IFITM2--S\n\nPCA INTERACTIONS:\n  ORF3a--ORF3a\n  S--S\n  S--S\n\nNETWORK SUMMARY: 10 proteins, 405 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Dok\n  CG13928--Dok\n  Dok--Src42A\n  Dok--Src64B\n  Src64B--Src64B\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dok--puc\n  Dok--shark\n  Src42A--puc\n\nCO-FRACTIONATION INTERACTIONS:\n  ptc--ptc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Dok--egl\n  Dok--egl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10651, CG11164, CG13928, Dok, Src42A, Src64B, egl, ptc, puc, shark\n\nTWO-HYBRID INTERACTIONS:\n  CG10651--Dok\n  CG11164--Dok\n  CG13928--Dok\n  Dok--Src42A\n  Dok--Src64B\n  Dok--ptc\n  Src64B--Src64B\n  ptc--ptc\n  ptc--ptc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dok--puc\n  Dok--shark\n  Src42A--puc\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Src42A--Src64B\n  Src42A--Src64B\n  Src42A--Src64B\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src42A--Src42A\n  Src42A--Src42A\n  Src42A--Src42A\n  Src64B--Src64B\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  egl--egl\n  egl--egl\n  ptc--ptc\n  ptc--ptc\n  ptc--ptc\n\nCO-FRACTIONATION INTERACTIONS:\n  ptc--ptc\n\nFRET INTERACTIONS:\n  ptc--ptc\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Dok--egl\n  Dok--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 10 proteins, 30 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6843\n  CG14490--CG31211\n  CG14490--CG5808\n  CG1622--CG1622\n  CG1622--CG31211\n  CG1622--CG5808\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG3918\n  CG31211--CG5808\n  CG31211--CG6843\n  CG3918--CG5808\n  CG3918--CG6843\n  CG5808--CG6843\n  CG5808--eIF-2alpha\n  CG6843--CG6843\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG18746--CG5808\n  CG18746--CG6843\n  CG5808--KLHL18\n  KLHL18--KLHL18\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG13151\n  CG10959--Ets65A\n  CG10959--GATAe\n  CG10959--RpS30\n  CG10959--Spt6\n\nPCA INTERACTIONS:\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10959--CG16865\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG12470, CG13151, CG16865, Eb1, Ets65A, GATAe, Gprk1, RpS30, Spt6\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG12470\n  CG10959--CG13151\n  CG10959--Eb1\n  CG10959--Ets65A\n  CG10959--GATAe\n  CG10959--Gprk1\n  CG10959--RpS30\n  CG10959--Spt6\n  Eb1--Eb1\n  Eb1--Eb1\n\nPCA INTERACTIONS:\n  Eb1--Eb1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10959--CG16865\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10075, CG11164, CG11322, CG12470, CG3704, CG3919, Cpr50Ca, Moe, Plzf, RpS7\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG11164--CG11322\n  CG11322--CG12470\n  CG11322--CG3704\n  CG11322--CG3919\n  CG11322--Cpr50Ca\n  CG11322--Moe\n  CG11322--Plzf\n  CG11322--RpS7\n  CG3919--CG3919\n  Moe--Moe\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2\n- Network density: approximately 0.36\n- Hub proteins (highly connected): PIG-S, AGO2\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AGO2, BM-40-SPARC, CG11190, CG44009, CG4848, Hsc70-4, PIG-S, Pdh, Prosbeta2, Vsx2\n\nTWO-HYBRID INTERACTIONS:\n  AGO2--PIG-S\n  BM-40-SPARC--PIG-S\n  BM-40-SPARC--Vsx2\n  CG44009--PIG-S\n  CG4848--PIG-S\n  Hsc70-4--PIG-S\n  PIG-S--Pdh\n  PIG-S--Prosbeta2\n  PIG-S--Vsx2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AGO2--AGO2\n  AGO2--Hsc70-4\n  CG11190--PIG-S\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Pdh--Pdh\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  AGO2--AGO2\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11409, isopeptidase-T-3\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG33056, CG34411, Obp56a, isopeptidase-T-3, spict\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--CG33056\n  CG11409--CG34411\n  CG11409--Obp56a\n  CG11409--isopeptidase-T-3\n  CG11409--spict\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n- Network density: approximately 0.61\n- Hub proteins (highly connected): cnn, CG10139\n- Total interactions: approximately 22"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10139, CG17765, CycG, Hug, RpS23, Src64B, betaTub56D, cnn, prc\n\nTWO-HYBRID INTERACTIONS:\n  CG10139--CG10139\n  CG10139--CG17765\n  CG10139--CycG\n  CG10139--Hug\n  CG10139--RpS23\n  CG10139--Src64B\n  CG10139--betaTub56D\n  CG10139--cnn\n  CG10139--prc\n  CG17765--CG17765\n  Src64B--Src64B\n  Src64B--betaTub56D\n  betaTub56D--cnn\n  cnn--cnn\n  cnn--cnn\n  cnn--cnn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  betaTub56D--cnn\n  cnn--cnn\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Src64B--Src64B\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  cnn--cnn\n  cnn--cnn\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  cnn--cnn\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG3281, CG7386, CG8159, RpL18A, esn, fs(2)ltoPP43\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--CG3281\n  CG12470--CG8159\n  CG12470--esn\n  CG3281--CG7386\n  CG3281--CG8159\n  CG3281--esn\n  CG3281--fs(2)ltoPP43\n  CG7386--CG7386\n  CG7386--fs(2)ltoPP43\n  CG8159--CG8159\n  CG8159--CG8159\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3281--RpL18A\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bx, CG1126, Nup153, dnmt1, fu, prmt1, tsr\n\nFRET INTERACTIONS:\n  fu--fu\n  fu--fu\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  fu--fu\n\nNETWORK SUMMARY: 7 proteins, 3 interactions\n\nNew protein to integrate: fbl\n\nPredict the interactions for fbl:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1126--fbl\n  CG1126--fbl\n  Nup153--fbl\n  fbl--fu\n  fbl--tsr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  fbl--prmt1\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--fbl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dnmt1--fbl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  dnmt1--fbl"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG4576, FucTB, Or45a, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG4576--Or45a\n  FucTB--Or45a\n  Or45a--Ref1\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4576, FucTB, Or45a, Ref1\n\nTWO-HYBRID INTERACTIONS:\n  CG4576--Or45a\n  FucTB--Or45a\n  Or45a--Ref1\n  Ref1--Ref1\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG8188, RASSF8, Traf6, Vap-33A, aop, dm, org-1, tau, tim\n\nTWO-HYBRID INTERACTIONS:\n  CG8188--RASSF8\n  CG8188--org-1\n  RASSF8--RASSF8\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  dm--org-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--Traf6\n  CG8188--Vap-33A\n  CG8188--aop\n  CG8188--dm\n  CG8188--tau\n  CG8188--tim\n  Traf6--Traf6\n  aop--aop\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nCO-FRACTIONATION INTERACTIONS:\n  aop--aop\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  aop--aop\n\nNETWORK SUMMARY: 9 proteins, 18 interactions\n\nNew protein to integrate: loco\n\nPredict the interactions for loco:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG8188--loco"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG11449, M1BP\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe\n\nTWO-HYBRID INTERACTIONS:\n  Arr1--CG11449\n  Arr1--M1BP\n  CG11449--CG31365\n  CG11449--Grip71\n  CG11449--Hsp68\n  CG11449--M1BP\n  CG11449--Ndc1\n  CG11449--krz\n  CG11449--nuf\n  CG11449--poe\n  CG31365--CG31365\n  M1BP--M1BP\n  nuf--nuf\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG9578, CG10465\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG9578\n  CG10570--CG9578\n  CG17162--CG9578\n  CG17162--Pp2B-14D\n  CG17325--CG9578\n  CG9578--CG9578\n  CG9578--Pp2B-14D\n  CG9578--Pph13\n  CG9578--Strn-Mlck\n  CG9578--mts\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor\n- Network density: approximately 0.51\n- Hub proteins (highly connected): CG11417, gig\n- Total interactions: approximately 23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11417, Pi3K21B, RpS11, Rtnl1, Tsc1, dos, gig, kel, phl, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG11417--RpS11\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11417--Pi3K21B\n  CG11417--Rtnl1\n  CG11417--Rtnl1\n  CG11417--Tsc1\n  CG11417--dos\n  CG11417--gig\n  CG11417--phl\n  CG11417--rictor\n  RpS11--Tsc1\n  RpS11--gig\n  Rtnl1--Rtnl1\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n  Tsc1--gig\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Tsc1--gig\n  Tsc1--gig\n  kel--kel\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG11417--kel\n  kel--kel\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG33056, CG5555, Hrb27C, betaTub56D\n\nTWO-HYBRID INTERACTIONS:\n  CG33056--CG5555\n  CG5555--CG5555\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG33056--Hrb27C\n  CG33056--betaTub56D\n\nNETWORK SUMMARY: 4 proteins, 4 interactions\n\nNew protein to integrate: CG11409\n\nPredict the interactions for CG11409:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11409--CG33056"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10483, CG12470, Cka, Mob4\n- Network density: approximately 1.67\n- Hub proteins (highly connected): Cka, Mob4\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10483, CG12470, Cka, Mob4\n\nTWO-HYBRID INTERACTIONS:\n  CG10483--CG12470\n  CG10483--Cka\n  CG10483--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cka--Cka\n  Cka--Cka\n  Cka--Mob4\n  Cka--Mob4\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cka--Mob4\n  Cka--Mob4\n\nNETWORK SUMMARY: 4 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68\n\nTWO-HYBRID INTERACTIONS:\n  CG30497--GstT4\n  CG8032--GstT4\n  GstT4--Tektin-A\n  GstT4--dm\n  GstT4--mrn\n  GstT4--pUf68\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dm--pUf68\n  dm--pUf68\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13551, CG30497, CG8032, GstT4, Nup54, Tektin-A, dm, mrn, pUf68\n\nTWO-HYBRID INTERACTIONS:\n  CG13551--GstT4\n  CG30497--GstT4\n  CG8032--GstT4\n  GstT4--Nup54\n  GstT4--Tektin-A\n  GstT4--dm\n  GstT4--mrn\n  GstT4--pUf68\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dm--pUf68\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dm--pUf68\n  dm--pUf68\n\nNETWORK SUMMARY: 9 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept\n\nTWO-HYBRID INTERACTIONS:\n  CG5973--phyl\n  phyl--phyl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1620--CG5973\n  CG1620--CG8745\n  CG1620--MrgBP\n  CG5973--CG8745\n  CG5973--MrgBP\n  CG5973--dom\n  CG5973--rept\n  CG8745--MrgBP\n  CG8745--dom\n  MrgBP--dom\n  YL-1--dom\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Rpd3--dom\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dom--rept\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG1620, CG5973, CG8745, MrgBP, Rpd3, YL-1, dom, phyl, rept\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n  CG5973--phyl\n  phyl--phyl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1620--CG5973\n  CG1620--CG8745\n  CG1620--MrgBP\n  CG1620--Rpd3\n  CG1620--dom\n  CG5973--CG8745\n  CG5973--MrgBP\n  CG5973--Rpd3\n  CG5973--YL-1\n  CG5973--dom\n  CG5973--rept\n  CG8745--MrgBP\n  CG8745--Rpd3\n  CG8745--dom\n  CG8745--rept\n  MrgBP--dom\n  YL-1--dom\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Rpd3--dom\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dom--rept\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG11570, CG9522\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11570, CG12723, CG9522, Cpr72Ea, brk, loco\n\nTWO-HYBRID INTERACTIONS:\n  CG11570--CG12723\n  CG11570--CG9522\n  CG11570--Cpr72Ea\n  CG11570--brk\n  CG11570--loco\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10462, CG2678, Cpr50Ca, Mdr49, Tango6, pzg\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--Mdr49\n  CG2678--CG2678\n  CG2678--Mdr49\n  Cpr50Ca--Mdr49\n  Mdr49--Tango6\n  Mdr49--pzg\n  pzg--pzg\n\nPCA INTERACTIONS:\n  pzg--pzg\n\nNETWORK SUMMARY: 6 proteins, 8 interactions\n\nNew protein to integrate: Hmgcr\n\nPredict the interactions for Hmgcr:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hmgcr--Mdr49"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2\n\nTWO-HYBRID INTERACTIONS:\n  CG9288--MBD-R2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3709--CG9288\n  CG4325--CG9288\n  CG7407--CG9288\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2\n\nTWO-HYBRID INTERACTIONS:\n  CG9288--Ef1alpha48D\n  CG9288--MBD-R2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3709--CG7407\n  CG3709--CG9288\n  CG4325--CG9288\n  CG7407--CG9288\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, toc\n\nTWO-HYBRID INTERACTIONS:\n  CG1319--mRpS17\n  CG5009--mRpS17\n  Gip--mRpS17\n  Mal-A4--mRpS17\n  Pburs--mRpS17\n  St4--mRpS17\n  mRpS17--toc\n\nCO-FRACTIONATION INTERACTIONS:\n  Pburs--Pburs\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Gip--Tom20\n  Tom20--Tom20\n  Tom20--mRpS17\n  Tom20--toc\n\nNETWORK SUMMARY: 9 proteins, 12 interactions\n\nNew protein to integrate: pck\n\nPredict the interactions for pck:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  mRpS17--pck"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg\n- Network density: approximately 0.48\n- Hub proteins (highly connected): Rb97D, CG43444\n- Total interactions: approximately 10"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10777, CG2199, CG43444, Hrb27C, Rb97D, ZAP3, vkg\n\nTWO-HYBRID INTERACTIONS:\n  CG2199--Hrb27C\n  CG2199--Rb97D\n  Hrb27C--Rb97D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10777--Rb97D\n  CG10777--ZAP3\n  CG43444--Rb97D\n  CG43444--ZAP3\n  CG43444--vkg\n  Rb97D--ZAP3\n  Rb97D--vkg\n\nNETWORK SUMMARY: 7 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Gtp-bp, Orco\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG2046--Gtp-bp\n  CG33017--Gtp-bp\n  Gtp-bp--TwdlE\n  Gtp-bp--obst-E\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gtp-bp--Orco\n  Gtp-bp--S6kII\n  Gtp-bp--SrpRbeta\n  Gtp-bp--gig\n  Gtp-bp--rictor\n  S6kII--gig\n\nFRET INTERACTIONS:\n  Orco--Orco\n  Orco--Orco\n\nPCA INTERACTIONS:\n  Orco--Orco\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Anp, CG11576, CG7910, CSN8, Pp2A-29B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Anp, CG11576, CG7910, CSN8, Pp2A-29B\n\nTWO-HYBRID INTERACTIONS:\n  Anp--CG7910\n  CG11576--CG7910\n  CG7910--CSN8\n  CG7910--Pp2A-29B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10366, CG10494, CG6693, VhaAC39-1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10366, CG10494, CG6693, VhaAC39-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10366--CG10494\n  CG10366--VhaAC39-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10366--CG6693\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10214, CG5484, CG7222, TwdlL"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10214, CG5484, CG7222, TwdlL\n\nTWO-HYBRID INTERACTIONS:\n  CG10214--CG7222\n  CG5484--CG7222\n  CG7222--TwdlL\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--Obp56a\n  CG13494--Obp56a\n  Obp56a--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, CG13494, CG14684, Lcp65Ae, Obp56a, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--Obp56a\n  CG13494--Obp56a\n  CG14684--Obp56a\n  Lcp65Ae--Obp56a\n  Obp56a--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG8927, cnc\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG15865, CG17162, CG3225, CG6945, CG8927, Hey, Ir60a, cindr, cnc, spz3\n\nTWO-HYBRID INTERACTIONS:\n  CG15865--CG8927\n  CG17162--CG8927\n  CG3225--CG8927\n  CG6945--CG8927\n  CG8927--Hey\n  CG8927--Ir60a\n  CG8927--cindr\n  CG8927--cnc\n  CG8927--spz3\n  Hey--cnc\n\nPCA INTERACTIONS:\n  cnc--cnc\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCKLR-17D1, CG8507, CG9928, Dsk, Ptr\n\nTWO-HYBRID INTERACTIONS:\n  CG8507--Dsk\n  CG9928--Dsk\n  Dsk--Ptr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CCKLR-17D1--Dsk\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1635, Pbgs, Tim17a2\n- Network density: approximately 1.00\n- Hub proteins (highly connected): Pbgs, Tim17a2\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, Pbgs, Tim17a2\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--Pbgs\n  Pbgs--Pbgs\n  Pbgs--Tim17a2\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG9986, Jon66Cii, RASSF8, lama, ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG9986--lama\n  Jon66Cii--lama\n  RASSF8--RASSF8\n  RASSF8--lama\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9986, Jon66Cii, RASSF8, lama, ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG9986--lama\n  Jon66Cii--lama\n  RASSF8--RASSF8\n  RASSF8--lama\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  lama--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 5 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10809, Cip4, Nup214, Nup58, l(3)05822\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG10809, Cip4\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10809, Cip4, Nup214, Nup58, l(3)05822\n\nTWO-HYBRID INTERACTIONS:\n  CG10809--Cip4\n  CG10809--Cip4\n  CG10809--Nup214\n  CG10809--Nup58\n  CG10809--l(3)05822\n  Cip4--Cip4\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG42676\n  CG11164--CG42676\n  CG15631--CG42676\n  CG3548--CG3548\n  CG42676--Su(dx)\n  CG42676--prd\n  CG42676--slif\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG42676\n  CG11164--CG42676\n  CG15631--CG42676\n  CG15631--CG5376\n  CG3548--CG3548\n  CG42676--CG5376\n  CG42676--Su(dx)\n  CG42676--prd\n  CG42676--slif\n  CG5376--CG5376\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3548--CG42676\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD\n\nTWO-HYBRID INTERACTIONS:\n  IL1RAPL1--NCS1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  IL1RAPL1--NCS1\n  IL1RAPL1--PTPRD\n  NCS1--NCS1\n\nFRET INTERACTIONS:\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n  NCS1--NCS1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IL1RAPL1--NR3C1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  NR3C1--NR3C1\n  NUDCD2--NUDCD2\n\nNETWORK SUMMARY: 7 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ARHGAP22, CFTR, IL1RAPL1, NCS1, NR3C1, NUDCD2, PTPRD\n\nTWO-HYBRID INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ARHGAP22--IL1RAPL1\n  ARHGAP22--IL1RAPL1\n  IL1RAPL1--NCS1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CFTR--CFTR\n  IL1RAPL1--NCS1\n  IL1RAPL1--PTPRD\n  NCS1--NCS1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  NR3C1--NR3C1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--CFTR\n  CFTR--IL1RAPL1\n  IL1RAPL1--NUDCD2\n  NR3C1--NR3C1\n  NUDCD2--NUDCD2\n\nFRET INTERACTIONS:\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nCO-PURIFICATION INTERACTIONS:\n  CFTR--CFTR\n  NCS1--NCS1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  IL1RAPL1--NR3C1\n  NR3C1--NR3C1\n  NR3C1--NR3C1\n\nNETWORK SUMMARY: 7 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11409, Med, gbb, sax, spict, tkv, wit\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  sax--tkv\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--gbb\n  Med--spict\n  Med--tkv\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  spict--tkv\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gbb--gbb\n  gbb--tkv\n  sax--tkv\n  spict--wit\n  spict--wit\n  tkv--tkv\n\nCO-FRACTIONATION INTERACTIONS:\n  gbb--gbb\n\nNETWORK SUMMARY: 7 proteins, 19 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11409, Med, gbb, sax, spict, tkv, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG11409--spict\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  sax--tkv\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  gbb--sax\n  gbb--tkv\n  gbb--tkv\n  gbb--tkv\n  sax--tkv\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Med--gbb\n  Med--sax\n  Med--spict\n  Med--tkv\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--spict\n  gbb--tkv\n  gbb--tkv\n  sax--spict\n  sax--tkv\n  spict--tkv\n  spict--wit\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  gbb--gbb\n  gbb--sax\n  gbb--sax\n  gbb--sax\n  gbb--tkv\n  sax--sax\n  sax--tkv\n  sax--tkv\n  spict--wit\n  spict--wit\n  tkv--tkv\n\nCO-FRACTIONATION INTERACTIONS:\n  gbb--gbb\n\nNETWORK SUMMARY: 7 proteins, 35 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10869, CG9986, CoVa, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--CG9986\n  CG10869--CoVa\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10869, CG9986, CoVa, nonA-l\n\nTWO-HYBRID INTERACTIONS:\n  CG10869--CG9986\n  CG10869--CoVa\n  CG10869--nonA-l\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10222, CG11322, CG2656, CG3704\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG3704, CG10222\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG11322, CG2656, CG3704\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG3704\n  CG11322--CG3704\n  CG2656--CG3704\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17244, CG9293, Liprin-beta, Mes4, NC2alpha, Taf11\n\nTWO-HYBRID INTERACTIONS:\n  CG17244--CG9293\n  CG17244--Liprin-beta\n  CG17244--Mes4\n  CG17244--NC2alpha\n  CG17244--Taf11\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Liprin-beta--Liprin-beta\n  Taf11--Taf11\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bx, Chi, Hydr2, how\n\nTWO-HYBRID INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Hydr2--how\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bx--Chi\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Hydr2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Bx--Chi\n  Chi--Hydr2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bx--Chi\n  Chi--Chi\n  Chi--Chi\n  how--how\n\nNETWORK SUMMARY: 4 proteins, 17 interactions\n\nNew protein to integrate: Grasp65\n\nPredict the interactions for Grasp65:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Grasp65--Hydr2\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  Grasp65--how"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10324, CG14490, CG1622, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6843\n  CG14490--CG31211\n  CG14490--CG5808\n  CG1622--CG1622\n  CG1622--CG31211\n  CG1622--CG5808\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG3918\n  CG31211--CG5808\n  CG31211--CG6843\n  CG3918--CG5808\n  CG3918--CG6843\n  CG5808--CG6843\n  CG5808--eIF-2alpha\n  CG6843--CG6843\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n\nNETWORK SUMMARY: 9 proteins, 27 interactions\n\nNew protein to integrate: CG18746\n\nPredict the interactions for CG18746:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG5808\n  CG18746--CG6843"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG10462, Mdr49\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10462, CG10694, CG2116, CG3847, CG7911, Mdr49, Usf\n\nTWO-HYBRID INTERACTIONS:\n  CG10462--CG10694\n  CG10462--CG2116\n  CG10462--CG3847\n  CG10462--CG7911\n  CG10462--Mdr49\n  CG10462--Usf\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Atg1, CG10103, CG12082, RpS27A, okr, th"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg1, CG10103, CG12082, RpS27A, okr, th\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--CG12082\n  CG12082--okr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg1--CG12082\n  CG12082--RpS27A\n  RpS27A--th\n  th--th\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Atg1--Atg1\n  Atg1--Atg1\n  th--th\n  th--th\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg1--th\n  CG12082--th\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Atg1--CG12082\n\nCO-LOCALIZATION INTERACTIONS:\n  Atg1--CG12082\n\nNETWORK SUMMARY: 6 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10514, CG11164, CG11892, CG9986, poe, spn-B"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10514, CG11164, CG11892, CG9986, poe, spn-B\n\nTWO-HYBRID INTERACTIONS:\n  CG10514--CG11892\n  CG11164--CG11892\n  CG11892--CG9986\n  CG11892--poe\n  CG11892--spn-B\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10889, CG11710, CG3793, CG43691, CG7277, CG9293, CtBP, Ice, Lapsyn, rut\n\nTWO-HYBRID INTERACTIONS:\n  CG10889--Lapsyn\n  CG11710--Lapsyn\n  CG43691--Lapsyn\n  CG9293--Lapsyn\n  CtBP--CtBP\n  CtBP--Lapsyn\n  Ice--Ice\n  Ice--Ice\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3793--CG7277\n  CG3793--Ice\n  CG3793--Lapsyn\n  CG7277--Ice\n  CG7277--Lapsyn\n  Ice--Lapsyn\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Lapsyn--rut\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CtBP--CtBP\n  CtBP--CtBP\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n\nTWO-HYBRID INTERACTIONS:\n  CG15124--Rpt6R\n  CG5026--Rpt6R\n  Ibf2--Ibf2\n  Ibf2--Rpt6R\n  Rpt6R--fidipidine\n  Rpt6R--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpt6R--atl\n  atl--atl\n\nCO-FRACTIONATION INTERACTIONS:\n  atl--atl\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  atl--atl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  atl--atl\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1091, CG15124, CG5026, Ibf2, Rlip, Rpt6R, atl, bigmax, fidipidine, rhi\n\nTWO-HYBRID INTERACTIONS:\n  CG1091--Rpt6R\n  CG15124--Rpt6R\n  CG5026--Rpt6R\n  Ibf2--Ibf2\n  Ibf2--Rpt6R\n  Rlip--Rpt6R\n  Rpt6R--bigmax\n  Rpt6R--fidipidine\n  Rpt6R--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpt6R--atl\n  atl--atl\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  atl--atl\n  atl--atl\n\nCO-FRACTIONATION INTERACTIONS:\n  atl--atl\n\nFRET INTERACTIONS:\n  atl--atl\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  atl--atl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  atl--atl\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  atl--atl\n\nNETWORK SUMMARY: 10 proteins, 19 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG16947, CG8316, Rcd-1r, Vang, pwn\n- Network density: approximately 0.80\n- Hub proteins (highly connected): Vang, pwn\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG16947, CG8316, Rcd-1r, Vang, pwn\n\nTWO-HYBRID INTERACTIONS:\n  CG16947--pwn\n  CG8316--pwn\n  Rcd-1r--pwn\n  Vang--Vang\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Vang--pwn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Vang--Vang\n  Vang--Vang\n  Vang--Vang\n\nNETWORK SUMMARY: 5 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10014, CG11327, CG17770, CG32392, Cam, Poxm"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10014, CG11327, CG17770, CG32392, Cam, Poxm\n\nTWO-HYBRID INTERACTIONS:\n  CG10014--CG11327\n  CG10014--CG17770\n  CG10014--Cam\n  CG10014--Cam\n  CG10014--Poxm\n  CG32392--Poxm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10014--CG32392\n  CG10014--CG32392\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10014--CG32392\n\nNETWORK SUMMARY: 6 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11340, Peb, a6, betaggt-II\n\nTWO-HYBRID INTERACTIONS:\n  CG11340--Peb\n  CG11340--a6\n  CG11340--betaggt-II\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: PebII\n\nPredict the interactions for PebII:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11340--PebII"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31961, CG3332, CG5734, Pak, Prat, Prat2, RhoGAP68F, ald, nej\n\nTWO-HYBRID INTERACTIONS:\n  CG31961--Prat2\n  CG3332--Prat2\n  CG5734--Prat2\n  Pak--Prat2\n  Prat2--RhoGAP68F\n  Prat2--ald\n  Prat2--nej\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Prat--Prat2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n  ald--ald\n  nej--nej\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ald--ald\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10674, CG34267, PIG-C, mtd\n\nTWO-HYBRID INTERACTIONS:\n  CG10674--CG34267\n  CG10674--PIG-C\n  CG10674--mtd\n  CG34267--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: CG1544\n\nPredict the interactions for CG1544:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10674--CG1544"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10396, CG11134, CG30089, janA, mus101, yki\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG30089, CG11134\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10396, CG11134, CG30089, janA, mus101, yki\n\nTWO-HYBRID INTERACTIONS:\n  CG10396--CG30089\n  CG11134--CG11134\n  CG11134--CG30089\n  CG11134--yki\n  CG30089--janA\n  CG30089--mus101\n  CG30089--yki\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG10750, CG10133\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10133, CG10750, CG11656, CG12985, CG6543, Dysb, Nup62, Pglym87, mtacp1, sala\n\nTWO-HYBRID INTERACTIONS:\n  CG10133--CG10133\n  CG10750--CG11656\n  CG10750--CG12985\n  CG10750--Dysb\n  CG10750--Nup62\n  CG10750--Pglym87\n  CG10750--mtacp1\n  CG10750--sala\n  CG12985--CG12985\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10133--CG10750\n  CG10133--CG6543\n  CG10750--CG6543\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG11345, Cip4\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11345, CG2972, CG4887, Cip4, HLH4C, RtGEF\n\nTWO-HYBRID INTERACTIONS:\n  CG11345--CG2972\n  CG11345--CG4887\n  CG11345--Cip4\n  CG11345--HLH4C\n  CG11345--RtGEF\n  Cip4--Cip4\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG17658, Pat1, scpr-B, scpr-C\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG17658, scpr-B\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17658, Pat1, scpr-B, scpr-C\n\nTWO-HYBRID INTERACTIONS:\n  CG17658--Pat1\n  CG17658--scpr-B\n  CG17658--scpr-C\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  scpr-B--scpr-C\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG6701, CG9775, FK506-bp1, Ref1, Syp, Zn72D, eIF4E-7, phl\n\nTWO-HYBRID INTERACTIONS:\n  CG9775--Ref1\n  CG9775--Zn72D\n  CG9775--eIF4E-7\n  FK506-bp1--FK506-bp1\n  Ref1--Ref1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6701--CG9775\n  CG6701--Syp\n  CG9775--FK506-bp1\n  CG9775--Syp\n  CG9775--phl\n  FK506-bp1--FK506-bp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nNETWORK SUMMARY: 8 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc\n\nTWO-HYBRID INTERACTIONS:\n  CG1319--mRpS17\n  CG5009--mRpS17\n  Gip--mRpS17\n  Pburs--mRpS17\n  St4--mRpS17\n\nCO-FRACTIONATION INTERACTIONS:\n  Pburs--Pburs\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Gip--Tom20\n  Tom20--mRpS17\n  Tom20--toc\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc\n\nTWO-HYBRID INTERACTIONS:\n  CG1319--mRpS17\n  CG5009--mRpS17\n  Gip--mRpS17\n  Mal-A4--mRpS17\n  Pburs--mRpS17\n  St4--mRpS17\n  mRpS17--pck\n  mRpS17--toc\n\nCO-FRACTIONATION INTERACTIONS:\n  Pburs--Pburs\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Gip--Tom20\n  Tom20--Tom20\n  Tom20--mRpS17\n  Tom20--toc\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10513, CG11447, CG11726, CG12470, CG1738, CG2120, CG2709, CG5674, CG8038, CG8349\n\nTWO-HYBRID INTERACTIONS:\n  CG10513--CG11726\n  CG11447--CG11726\n  CG11726--CG12470\n  CG11726--CG1738\n  CG11726--CG2120\n  CG11726--CG2709\n  CG11726--CG5674\n  CG11726--CG8038\n  CG11726--CG8349\n  CG2709--CG2709\n  CG8349--CG8349\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG18624, CG10559\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG18624\n  CG18624--CG5114\n  CG18624--Cpr92F\n  CG18624--Hsc70-4\n  CG18624--mam\n  CG18624--trol\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10257, alpha-catenin-related, bur"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10257, alpha-catenin-related, bur\n\nTWO-HYBRID INTERACTIONS:\n  CG10257--alpha-catenin-related\n  CG10257--alpha-catenin-related\n  CG10257--bur\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: BEAF-32, Eb1, GEFmeso, Kebab, Tab2\n- Network density: approximately 2.00\n- Hub proteins (highly connected): BEAF-32, Eb1\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: BEAF-32, Eb1, GEFmeso, Kebab, Tab2\n\nTWO-HYBRID INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  BEAF-32--Kebab\n  Eb1--Eb1\n  Eb1--Eb1\n  GEFmeso--Kebab\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Kebab--Tab2\n  Tab2--Tab2\n\nPCA INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Eb1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  BEAF-32--BEAF-32\n  BEAF-32--BEAF-32\n  Eb1--Kebab\n\nCO-FRACTIONATION INTERACTIONS:\n  BEAF-32--BEAF-32\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  BEAF-32--BEAF-32\n\nNETWORK SUMMARY: 5 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev\n- Network density: approximately 0.57\n- Hub proteins (highly connected): Nf-YA, Nf-YB\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG8128, Mes4, Nf-YA, Nf-YB, Nf-YC, phl, sev\n\nTWO-HYBRID INTERACTIONS:\n  CG8128--Nf-YB\n  Mes4--Nf-YB\n  Nf-YA--Nf-YA\n  Nf-YA--Nf-YC\n  Nf-YB--Nf-YC\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YB\n  Nf-YA--Nf-YC\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Nf-YA--phl\n  Nf-YA--sev\n  Nf-YB--phl\n  Nf-YB--sev\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty\n- Network density: approximately 0.27\n- Hub proteins (highly connected): CG1486, ci\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Abd-B, CG10252, CG1486, CG15712, CG4116, CG7712, H2.0, ci, elfless, sty\n\nTWO-HYBRID INTERACTIONS:\n  Abd-B--CG1486\n  CG10252--CG1486\n  CG1486--CG15712\n  CG1486--CG4116\n  CG1486--CG7712\n  CG1486--H2.0\n  CG1486--ci\n  CG1486--elfless\n  CG1486--sty\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Abd-B, CG10252, CG1486, CG4116, CG7712, H2.0, ci, elfless, sty\n\nTWO-HYBRID INTERACTIONS:\n  Abd-B--CG1486\n  CG10252--CG1486\n  CG1486--CG4116\n  CG1486--CG7712\n  CG1486--H2.0\n  CG1486--ci\n  CG1486--elfless\n  CG1486--sty\n  ci--ci\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ci--ci\n\nFRET INTERACTIONS:\n  ci--ci\n\nNETWORK SUMMARY: 9 proteins, 11 interactions\n\nNew protein to integrate: CG15712\n\nPredict the interactions for CG15712:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1486--CG15712"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10321, CG14811, Fas2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG14811, Fas2\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG14811\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14811--Fas2\n  CG14811--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n\nNETWORK SUMMARY: 3 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, Moe, Rel, toy\n\nTWO-HYBRID INTERACTIONS:\n  CG11448--CG8145\n  CG11448--CG8145\n  CG13775--CG13775\n  CG13775--CG8145\n  CG31224--CG8145\n  CG34334--CG8145\n  CG8145--CG9902\n  CG8145--Moe\n  CG8145--Rel\n  CG8145--toy\n  CG9902--toy\n  Moe--Moe\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 9 proteins, 15 interactions\n\nNew protein to integrate: HLH4C\n\nPredict the interactions for HLH4C:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG8145--HLH4C"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Acp53Ea--CG17292\n  CG12393--CG17292\n  CG17292--CG31792\n  CG17292--CG8449\n  CG17292--D19B\n  CG17292--rux\n  CG17292--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Not10--Not10\n\nPCA INTERACTIONS:\n  D19B--D19B\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp53Ea, CG12393, CG17292, CG31792, CG8449, D19B, Not10, rux, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Acp53Ea--CG17292\n  CG12393--CG17292\n  CG17292--CG31792\n  CG17292--CG8449\n  CG17292--CG8449\n  CG17292--D19B\n  CG17292--Not10\n  CG17292--rux\n  CG17292--ttk\n  D19B--D19B\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Not10--Not10\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nPCA INTERACTIONS:\n  D19B--D19B\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps\n- Network density: approximately 0.22\n- Hub proteins (highly connected): CG42674, kermit\n- Total interactions: approximately 8"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1324, CG17107, CG42674, MRG15, RecQ4, Sec5, Zasp66, kermit, raps\n\nTWO-HYBRID INTERACTIONS:\n  CG1324--CG42674\n  CG17107--CG42674\n  CG42674--MRG15\n  CG42674--RecQ4\n  CG42674--Sec5\n  CG42674--Zasp66\n  CG42674--kermit\n  CG42674--raps\n\nNETWORK SUMMARY: 9 proteins, 8 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG1314, dx\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx\n\nTWO-HYBRID INTERACTIONS:\n  CCAP-R--CG1314\n  CG10301--CG1314\n  CG1314--CG15576\n  CG1314--CG15631\n  CG1314--CG6770\n  CG1314--CG9222\n  CG1314--Hakai\n  CG1314--RpS28b\n  CG1314--dx\n  dx--dx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dx--dx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg\n\nTWO-HYBRID INTERACTIONS:\n  CG7200--eRF1\n  DnaJ-1--Sap47\n  DnaJ-1--eRF1\n  Sap47--eRF1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n  Egfr--arm\n  Egfr--arm\n  smo--smo\n  smo--smo\n  smo--smo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Egfr--eRF1\n  arm--eRF1\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  eRF1--peb\n  eRF1--shn\n  eRF1--wg\n  smo--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Egfr--arm\n  Egfr--arm\n  Egfr--peb\n  eRF1--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Fitm2, Hoxd12, Jdp2, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n\nTWO-HYBRID INTERACTIONS:\n  Hoxd12--Taf13\n  Jdp2--Jdp2\n  Jdp2--Taf13\n  Taf11--Taf13\n  Taf11--Taf13\n  Taf13--Tbp\n  Taf13--TfIIA-L\n\nCO-PURIFICATION INTERACTIONS:\n  Taf6--e(y)3\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Jdp2--Jdp2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Taf11\n  Taf11--Tbp\n  Taf11--Tbp\n  Taf13--e(y)3\n  Taf13--e(y)3\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Tbp--TfIIA-L\n  Tbp--TfIIA-L\n  Tbp--e(y)3\n  Tbp--e(y)3\n  Tbp--e(y)3\n  TfIIA-L--TfIIA-L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Taf11--Taf6\n  Taf11--Tbp\n  Taf13--Taf6\n  Taf6--Tbp\n\nCO-FRACTIONATION INTERACTIONS:\n  Tbp--e(y)3\n\nPOSITIVE GENETIC INTERACTIONS:\n  Fitm2--Taf13\n\nNETWORK SUMMARY: 9 proteins, 31 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Br140, CG16838, CG17244, CG32809, CG7997, CG9293, Eaf6, GM130, Lapsyn\n\nTWO-HYBRID INTERACTIONS:\n  Br140--CG16838\n  CG17244--CG9293\n  CG32809--CG9293\n  CG7997--CG9293\n  CG9293--GM130\n  CG9293--Lapsyn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG16838\n  Br140--CG9293\n  Br140--CG9293\n  Br140--CG9293\n  Br140--Eaf6\n  Br140--Eaf6\n  Br140--Eaf6\n  CG16838--CG9293\n  CG16838--Eaf6\n  CG9293--Eaf6\n  CG9293--Eaf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Br140--CG16838\n  Br140--CG16838\n\nNETWORK SUMMARY: 9 proteins, 22 interactions\n\nNew protein to integrate: enok\n\nPredict the interactions for enok:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG16838--enok\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Br140--enok\n  Br140--enok\n  Br140--enok\n  CG16838--enok\n  CG16838--enok\n  CG9293--enok\n  CG9293--enok\n  Eaf6--enok\n  Eaf6--enok\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Br140--enok\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG16838--enok\n  CG16838--enok"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG30393, CG44001, Elp1, jbug\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG30393, Elp1\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG30393, CG44001, Elp1, jbug\n\nTWO-HYBRID INTERACTIONS:\n  CG30393--CG44001\n  CG30393--Elp1\n  CG30393--jbug\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--CG13005\n  CG13005--CG13526\n  CG13005--CG33017\n  CG13005--CG8173\n  CG13005--Rcc1\n  CG13005--scu\n  CG33017--scu\n\nNETWORK SUMMARY: 10 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Blos2, CG13005, CG13526, CG14868, CG14931, CG33017, CG7911, CG8173, Rcc1, scu\n\nTWO-HYBRID INTERACTIONS:\n  Blos2--Blos2\n  Blos2--Blos2\n  Blos2--CG13005\n  CG13005--CG13526\n  CG13005--CG14868\n  CG13005--CG14931\n  CG13005--CG33017\n  CG13005--CG7911\n  CG13005--CG8173\n  CG13005--Rcc1\n  CG13005--scu\n  CG33017--scu\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10911, CG2982, CG42336, Pex23\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG42336, CG10911\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10911, CG2982, CG42336, Pex23\n\nTWO-HYBRID INTERACTIONS:\n  CG10911--CG42336\n  CG2982--CG42336\n  CG42336--Pex23\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Klp3A, feo, kek3, neb, pav, sip2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Klp3A, feo, kek3, neb, pav, sip2\n\nTWO-HYBRID INTERACTIONS:\n  feo--kek3\n  feo--sip2\n  feo--sip2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Klp3A--feo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Klp3A--feo\n  feo--neb\n  feo--pav\n  feo--sip2\n  neb--pav\n  neb--pav\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  feo--sip2\n  feo--sip2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  feo--sip2\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav\n\nNETWORK SUMMARY: 6 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1\n- Network density: approximately 0.52\n- Hub proteins (highly connected): tbrd-1, sa\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2082, CG30417, Pp4-19C, Taf10b, ZAP3, sa, tbrd-1\n\nTWO-HYBRID INTERACTIONS:\n  CG2082--sa\n  CG30417--sa\n  CG30417--tbrd-1\n  CG30417--tbrd-1\n  Taf10b--sa\n  ZAP3--sa\n  sa--tbrd-1\n  tbrd-1--tbrd-1\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tbrd-1--tbrd-1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pp4-19C--sa\n\nNETWORK SUMMARY: 7 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n- Network density: approximately 0.64\n- Hub proteins (highly connected): KLHL18, CG5808\n- Total interactions: approximately 29"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10324, CG14490, CG1622, CG18746, CG31211, CG3918, CG5808, CG6843, KLHL18, eIF-2alpha\n\nTWO-HYBRID INTERACTIONS:\n  CG10324--CG31211\n  CG10324--CG5808\n  CG10324--CG6843\n  CG14490--CG31211\n  CG14490--CG5808\n  CG1622--CG1622\n  CG1622--CG31211\n  CG1622--CG5808\n  CG31211--CG31211\n  CG31211--CG31211\n  CG31211--CG3918\n  CG31211--CG5808\n  CG31211--CG6843\n  CG3918--CG5808\n  CG3918--CG6843\n  CG5808--CG6843\n  CG5808--eIF-2alpha\n  CG6843--CG6843\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n  KLHL18--KLHL18\n  KLHL18--KLHL18\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10324--KLHL18\n  CG18746--CG5808\n  CG18746--CG6843\n  CG5808--KLHL18\n  KLHL18--KLHL18\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG10324--KLHL18\n  CG5808--KLHL18\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Jupiter, Mink, foxo, mad2, skpB\n\nTWO-HYBRID INTERACTIONS:\n  Jupiter--Mink\n  Mink--mad2\n  Mink--skpB\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--foxo\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: Tsc1\n\nPredict the interactions for Tsc1:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Mink--Tsc1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dmtn--Ppp1r9b\n  Dmtn--Usp7\n  Dmtn--Ywhaz\n  Kctd13--Kctd13\n  Kctd13--Ppp1r9b\n  Kctd13--Usp7\n  Kctd13--Ywhaz\n  Ppp1r9b--Snca\n  Ppp1r9b--Ywhaz\n  Ppp1r9b--Ywhaz\n  Usp7--Usp7\n\nCO-FRACTIONATION INTERACTIONS:\n  Actb--Dmtn\n  Dmtn--Golga2\n  Snca--Snca\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Kctd13--Kctd13\n  Ppp1r9b--Ppp1r9b\n  Usp7--Usp7\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz\n\nTWO-HYBRID INTERACTIONS:\n  CG17344--Dmtn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Actb--Kctd13\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Dmtn--Kctd13\n  Dmtn--Ppp1r9b\n  Dmtn--Usp7\n  Dmtn--Ywhaz\n  Kctd13--Kctd13\n  Kctd13--Ppp1r9b\n  Kctd13--Prkaca\n  Kctd13--Usp7\n  Kctd13--Ywhaz\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Snca\n  Ppp1r9b--Ywhaz\n  Ppp1r9b--Ywhaz\n  Usp7--Usp7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ppp1r9b--Ppp1r9b\n\nCO-FRACTIONATION INTERACTIONS:\n  Actb--Dmtn\n  Dmtn--Golga2\n  Dmtn--Prkaca\n  Dmtn--Snca\n  Snca--Snca\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Kctd13--Kctd13\n  Ppp1r9b--Ppp1r9b\n  Usp7--Usp7\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Ady43A, CG1116, CG18417, Cpr92A, tx\n\nTWO-HYBRID INTERACTIONS:\n  Ady43A--CG1116\n  CG1116--CG18417\n  CG1116--tx\n\nNETWORK SUMMARY: 5 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Ady43A, CG1116, CG18417, Cpr92A, tx\n\nTWO-HYBRID INTERACTIONS:\n  Ady43A--CG1116\n  CG1116--CG18417\n  CG1116--Cpr92A\n  CG1116--tx\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n- Network density: approximately 0.47\n- Hub proteins (highly connected): CG7492, Sod\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1532, CG7492, CG7737, Got1, HIP-R, Nsf2, PHDP, Sod, kermit\n\nTWO-HYBRID INTERACTIONS:\n  CG7492--PHDP\n  CG7492--kermit\n  Nsf2--Nsf2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1532--CG7492\n  CG1532--CG7737\n  CG1532--Got1\n  CG1532--HIP-R\n  CG1532--Sod\n  CG7492--CG7737\n  CG7492--Got1\n  CG7492--HIP-R\n  CG7492--Sod\n  CG7737--HIP-R\n  CG7737--Sod\n  Got1--Sod\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7492--Nsf2\n\nCO-FRACTIONATION INTERACTIONS:\n  Sod--Sod\n\nNETWORK SUMMARY: 9 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1690, CG6304, CG9775, Gld2, Thor, cup, eIF4E-7, eIF4G, eIF4G2\n\nTWO-HYBRID INTERACTIONS:\n  CG1690--eIF4E-7\n  CG6304--eIF4E-7\n  CG9775--eIF4E-7\n  Gld2--eIF4E-7\n  Thor--eIF4E-7\n  Thor--eIF4E-7\n  cup--eIF4E-7\n  eIF4E-7--eIF4G\n  eIF4E-7--eIF4G2\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  eIF4E-7--eIF4G\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: mxt\n\nPredict the interactions for mxt:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  eIF4E-7--mxt\n  eIF4E-7--mxt"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S\n- Network density: approximately 0.39\n- Hub proteins (highly connected): CG10472, CG18508\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10472, CG18508, CG2789, CG33977, CG42359, CG8909, PIG-C, PIG-S\n\nTWO-HYBRID INTERACTIONS:\n  CG10472--CG18508\n  CG10472--CG2789\n  CG10472--CG33977\n  CG10472--CG42359\n  CG10472--CG8909\n  CG10472--PIG-C\n  CG10472--PIG-S\n  CG18508--CG18508\n  CG18508--CG33977\n  CG18508--PIG-C\n  PIG-C--PIG-C\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG31111, CG8909, Gtp-bp, obst-E, opa, sol"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31111, CG8909, Gtp-bp, obst-E, opa, sol\n\nTWO-HYBRID INTERACTIONS:\n  CG31111--obst-E\n  CG8909--obst-E\n  Gtp-bp--obst-E\n  obst-E--opa\n  obst-E--sol\n  opa--sol\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10514, CG11164, CG11892, CG9986, poe, spn-B\n\nTWO-HYBRID INTERACTIONS:\n  CG10514--CG11892\n  CG11164--CG11892\n  CG11892--CG9986\n  CG11892--spn-B\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10514, CG11164, CG11892, CG9986, poe, spn-B\n\nTWO-HYBRID INTERACTIONS:\n  CG10514--CG11892\n  CG11164--CG11892\n  CG11892--CG9986\n  CG11892--poe\n  CG11892--spn-B\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, ttk, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--bab1\n  CG17612--ttk\n  CG32121--bab1\n  CG32121--ttk\n  CG8907--bab1\n  Snr1--bab1\n  Trl--Trl\n  Trl--bab1\n  Trl--ttk\n  Trl--ttk\n  Trl--ttk\n  bab1--bab1\n  bab1--hts\n  bab1--ttk\n  bab1--vari\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nCO-LOCALIZATION INTERACTIONS:\n  Trl--Trl\n  hts--hts\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trl--Ubx\n  Trl--Ubx\n  Trl--Ubx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Trl--Trl\n  Trl--ttk\n  hts--hts\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  Trl--ttk\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n  ttk--ttk\n  ttk--ttk\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Snr1--Trl\n  Trl--ttk\n\nPCA INTERACTIONS:\n  CG32121--bab1\n  CG32121--ttk\n  Trl--Ubx\n  Ubx--bab1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  hts--hts\n\nNETWORK SUMMARY: 10 proteins, 44 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n- Network density: approximately 0.53\n- Hub proteins (highly connected): gro, CG4116\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG1486--CG4116\n  CG17666--CG4116\n  CG4116--CG9572\n  CG4116--CIAPIN1\n  CG4116--P32\n  CG4116--P32\n  CG4116--SmD1\n  CG4116--fok\n  CG4116--gro\n  CG4116--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CIAPIN1--CIAPIN1\n  P32--P32\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  CIAPIN1--CIAPIN1\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG33017, CG9850, Crk, E5, Grip91, dlg1, wg, wls\n\nTWO-HYBRID INTERACTIONS:\n  CG33017--CG9850\n  CG9850--Crk\n  CG9850--E5\n  CG9850--Grip91\n  CG9850--dlg1\n  dlg1--dlg1\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  CG9850--wls\n  wg--wls\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG9850--wg\n  CG9850--wg\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  dlg1--dlg1\n  wg--wls\n  wg--wls\n\nCO-FRACTIONATION INTERACTIONS:\n  dlg1--dlg1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  dlg1--dlg1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG9850--wg\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG32486, Obp58c, ScpX, ref(2)P\n- Network density: approximately 1.00\n- Hub proteins (highly connected): ScpX, CG32486\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32486, Obp58c, ScpX, ref(2)P\n\nTWO-HYBRID INTERACTIONS:\n  CG32486--CG32486\n  CG32486--ScpX\n  CG32486--ScpX\n  Obp58c--ScpX\n  ScpX--ref(2)P\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ref(2)P--ref(2)P\n\nNETWORK SUMMARY: 4 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Cyp4p2, Nsf2, Vap-33B, Wnt10, Wnt2, Wnt4, Wnt6, nkd, wg\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Wnt4--wg\n  nkd--wg\n  nkd--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nsf2--wg\n  nkd--wg\n\nTWO-HYBRID INTERACTIONS:\n  Nsf2--Nsf2\n\nNETWORK SUMMARY: 9 proteins, 6 interactions\n\nNew protein to integrate: por\n\nPredict the interactions for por:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Cyp4p2--por\n  Vap-33B--por\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Nsf2--por\n  nkd--por\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Wnt10--por\n  Wnt2--por\n  Wnt4--por\n  Wnt6--por\n  por--wg\n  por--wg"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n- Network density: approximately 0.80\n- Hub proteins (highly connected): l(3)01239, mgr\n- Total interactions: approximately 36"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10635, CG10681, CG10914, CG13993, CG7048, CG7770, SIP3, l(3)01239, mgr, mst\n\nTWO-HYBRID INTERACTIONS:\n  CG10635--CG10681\n  CG10635--CG10914\n  CG10635--SIP3\n  CG10681--CG10681\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  CG7048--mgr\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10635--CG13993\n  CG10635--CG7048\n  CG10635--CG7770\n  CG10635--l(3)01239\n  CG10635--mgr\n  CG10635--mst\n  CG13993--CG7048\n  CG13993--CG7770\n  CG13993--l(3)01239\n  CG13993--mgr\n  CG13993--mst\n  CG7048--CG7770\n  CG7048--l(3)01239\n  CG7048--mgr\n  CG7048--mst\n  CG7770--l(3)01239\n  CG7770--mgr\n  CG7770--mst\n  l(3)01239--mgr\n  l(3)01239--mst\n  mgr--mst\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  l(3)01239--mgr\n  l(3)01239--mgr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7048--l(3)01239\n  CG7048--l(3)01239\n  l(3)01239--mgr\n  l(3)01239--mgr\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 36 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13159, CG17440, CG33213, Hakai, Mlp84B, Or98b\n\nTWO-HYBRID INTERACTIONS:\n  CG13159--CG17440\n  CG17440--CG33213\n  CG17440--Hakai\n  CG17440--Mlp84B\n  CG17440--Or98b\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13326, Spc105R, lark, rti\n- Network density: approximately 0.83\n- Hub proteins (highly connected): rti, CG13326\n- Total interactions: approximately 5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13326, Spc105R, lark, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG13326--Spc105R\n  CG13326--lark\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13326--rti\n  lark--rti\n  rti--rti\n\nNETWORK SUMMARY: 4 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n- Network density: approximately 0.25\n- Hub proteins (highly connected): CG13043, sxc\n- Total interactions: approximately 9"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11350, CG13043, CG4896, CG6353, CG6380, Sld5, fd59A, spi, sxc\n\nTWO-HYBRID INTERACTIONS:\n  CG11350--CG13043\n  CG11350--sxc\n  CG13043--CG4896\n  CG13043--CG6353\n  CG13043--CG6380\n  CG13043--Sld5\n  CG13043--fd59A\n  CG13043--spi\n  CG13043--sxc\n\nNETWORK SUMMARY: 9 proteins, 9 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG32354, Vm26Aa, neur\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  neur--neur\n\nTWO-HYBRID INTERACTIONS:\n  neur--neur\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG10947\n\nPredict the interactions for CG10947:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10947--CG32354\n  CG10947--Vm26Aa\n  CG10947--neur"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n- Network density: approximately 0.81\n- Hub proteins (highly connected): Aats-gln, Aats-asp\n- Total interactions: approximately 29"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-asp--CG12304\n  Aats-gln--SpdS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-asp\n  Aats-arg--Aats-gln\n  Aats-arg--Aats-glupro\n  Aats-arg--Aats-ile\n  Aats-arg--CG12304\n  Aats-arg--CG15100\n  Aats-arg--CG8235\n  Aats-asp--Aats-gln\n  Aats-asp--Aats-glupro\n  Aats-asp--Aats-ile\n  Aats-asp--CG12304\n  Aats-asp--CG15100\n  Aats-asp--CG8235\n  Aats-gln--Aats-glupro\n  Aats-gln--Aats-ile\n  Aats-gln--CG12304\n  Aats-gln--CG15100\n  Aats-gln--CG8235\n  Aats-glupro--Aats-ile\n  Aats-glupro--CG12304\n  Aats-glupro--CG15100\n  Aats-glupro--CG8235\n  Aats-ile--CG15100\n  Aats-ile--CG8235\n  CG12304--CG15100\n  CG12304--CG8235\n  CG15100--CG8235\n\nNETWORK SUMMARY: 9 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n\nTWO-HYBRID INTERACTIONS:\n  FHL3--THEG\n  FHL3--THEG\n  MDFI--THEG\n  MDFI--THEG\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  MID1IP1--THEG\n  MTA2--MTA2\n  MTA2--THEG\n  PPP2R2D--THEG\n  PRICKLE3--THEG\n  RPGRIP1L--THEG\n  THEG--TTL\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n\nTWO-HYBRID INTERACTIONS:\n  FHL3--FHL3\n  FHL3--THEG\n  FHL3--THEG\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--THEG\n  MDFI--THEG\n  TTL--TTL\n  TTL--TTL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LEPREL2--THEG\n  MID1IP1--THEG\n  MTA2--MTA2\n  MTA2--THEG\n  PPP2R2D--THEG\n  PRICKLE3--THEG\n  RPGRIP1L--THEG\n  THEG--TTL\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13822, CG14317, Rca1, TFAM, ago, gammaTub37C\n\nTWO-HYBRID INTERACTIONS:\n  CG13822--CG14317\n  CG13822--Rca1\n  CG13822--TFAM\n  CG13822--ago\n  CG13822--gammaTub37C\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG11266, CG4116, Rga, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG4116--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  loqs--loqs\n\nNETWORK SUMMARY: 4 proteins, 6 interactions\n\nNew protein to integrate: CG8273\n\nPredict the interactions for CG8273:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11266--CG8273\n  CG4116--CG8273\n  CG8273--loqs\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG8273--Rga"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG4447, CG9577, Leash, Rab6, Su(P), Tom20, Traf6, Trs31, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG4447--CG9577\n  CG9577--CG9577\n  CG9577--Traf6\n  CG9577--Trs31\n  Leash--Leash\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG9577--Leash\n  CG9577--Rab6\n  CG9577--Su(P)\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG4447--Tom20\n  CG9577--Tom20\n  CG9577--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Fitm2, Hoxd12, Taf11, Taf13, Taf6, Tbp, TfIIA-L, e(y)3\n\nTWO-HYBRID INTERACTIONS:\n  Hoxd12--Taf13\n  Taf11--Taf13\n  Taf11--Taf13\n  Taf13--Tbp\n  Taf13--TfIIA-L\n\nCO-PURIFICATION INTERACTIONS:\n  Taf6--e(y)3\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf11--Taf11\n  Taf11--Tbp\n  Taf11--Tbp\n  Taf13--e(y)3\n  Taf13--e(y)3\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Taf6--Tbp\n  Tbp--TfIIA-L\n  Tbp--TfIIA-L\n  Tbp--e(y)3\n  Tbp--e(y)3\n  Tbp--e(y)3\n  TfIIA-L--TfIIA-L\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Taf11--Taf6\n  Taf11--Tbp\n  Taf13--Taf6\n  Taf6--Tbp\n\nCO-FRACTIONATION INTERACTIONS:\n  Tbp--e(y)3\n\nPOSITIVE GENETIC INTERACTIONS:\n  Fitm2--Taf13\n\nNETWORK SUMMARY: 8 proteins, 28 interactions\n\nNew protein to integrate: Jdp2\n\nPredict the interactions for Jdp2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  Jdp2--Jdp2\n  Jdp2--Taf13\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Jdp2--Jdp2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc\n- Network density: approximately 0.29\n- Hub proteins (highly connected): mRpS17, Tom20\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1319, CG5009, Gip, Mal-A4, Pburs, St4, Tom20, mRpS17, pck, toc\n\nTWO-HYBRID INTERACTIONS:\n  CG1319--mRpS17\n  CG5009--mRpS17\n  Gip--mRpS17\n  Mal-A4--mRpS17\n  Pburs--mRpS17\n  St4--mRpS17\n  mRpS17--pck\n  mRpS17--toc\n\nCO-FRACTIONATION INTERACTIONS:\n  Pburs--Pburs\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Gip--Tom20\n  Tom20--Tom20\n  Tom20--mRpS17\n  Tom20--toc\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-asp--CG12304\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-gln\n  Aats-arg--Aats-glupro\n  Aats-arg--CG12304\n  Aats-arg--CG15100\n  Aats-asp--Aats-glupro\n  Aats-asp--Aats-ile\n  Aats-asp--CG12304\n  Aats-asp--CG15100\n  Aats-asp--CG8235\n  Aats-gln--Aats-ile\n  Aats-gln--CG12304\n  Aats-gln--CG8235\n  Aats-glupro--Aats-ile\n  Aats-glupro--CG12304\n  Aats-glupro--CG15100\n  Aats-ile--CG15100\n  Aats-ile--CG8235\n  CG12304--CG15100\n  CG12304--CG8235\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-arg, Aats-asp, Aats-gln, Aats-glupro, Aats-ile, CG12304, CG15100, CG8235, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-asp--CG12304\n  Aats-gln--SpdS\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Aats-arg--Aats-asp\n  Aats-arg--Aats-gln\n  Aats-arg--Aats-glupro\n  Aats-arg--Aats-ile\n  Aats-arg--CG12304\n  Aats-arg--CG15100\n  Aats-arg--CG8235\n  Aats-asp--Aats-gln\n  Aats-asp--Aats-glupro\n  Aats-asp--Aats-ile\n  Aats-asp--CG12304\n  Aats-asp--CG15100\n  Aats-asp--CG8235\n  Aats-gln--Aats-glupro\n  Aats-gln--Aats-ile\n  Aats-gln--CG12304\n  Aats-gln--CG15100\n  Aats-gln--CG8235\n  Aats-glupro--Aats-ile\n  Aats-glupro--CG12304\n  Aats-glupro--CG15100\n  Aats-glupro--CG8235\n  Aats-ile--CG15100\n  Aats-ile--CG8235\n  CG12304--CG15100\n  CG12304--CG8235\n  CG15100--CG8235\n\nNETWORK SUMMARY: 9 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231\n\nTWO-HYBRID INTERACTIONS:\n  CG14062--l(3)L1231\n  M1BP--M1BP\n  Mer--Mer\n  RpS21--l(3)L1231\n  Snr1--l(3)L1231\n  Sry-alpha--l(3)L1231\n  betaggt-II--l(3)L1231\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mer--Snr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mer--Mer\n  Mer--Mer\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11134, CG14062, CR18854, M1BP, Mer, RpS21, Snr1, Sry-alpha, betaggt-II, l(3)L1231\n\nTWO-HYBRID INTERACTIONS:\n  CG11134--CG11134\n  CG11134--l(3)L1231\n  CG14062--l(3)L1231\n  CR18854--l(3)L1231\n  M1BP--M1BP\n  M1BP--l(3)L1231\n  Mer--Mer\n  Mer--l(3)L1231\n  RpS21--l(3)L1231\n  Snr1--l(3)L1231\n  Sry-alpha--l(3)L1231\n  betaggt-II--l(3)L1231\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Mer--Snr1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mer--Mer\n  Mer--Mer\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Ubx\n  Hnf4--Hr78\n  Hnf4--Rel\n  Hnf4--sima\n  Hnf4--spi\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hnf4--mdy\n  Hnf4--mdy\n  abd-A--spi\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nPCA INTERACTIONS:\n  Hnf4--Ubx\n  Hnf4--abd-A\n  Hr78--Ubx\n  abd-A--abd-A\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11164, Gadd45, Hnf4, Hr78, Rel, Ubx, abd-A, mdy, sima, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11164--Hnf4\n  CG11164--Ubx\n  Gadd45--Hnf4\n  Hnf4--Hr78\n  Hnf4--Rel\n  Hnf4--sima\n  Hnf4--spi\n  Hr78--Rel\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Hnf4--mdy\n  Hnf4--mdy\n  Ubx--abd-A\n  Ubx--abd-A\n  abd-A--spi\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nPCA INTERACTIONS:\n  Hnf4--Ubx\n  Hnf4--abd-A\n  Hr78--Ubx\n  Hr78--Ubx\n  Hr78--abd-A\n  Ubx--abd-A\n  abd-A--abd-A\n\nNETWORK SUMMARY: 10 proteins, 23 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG10750--Pglym87\n  CG14232--Pglym87\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17027--Pglym78\n  CG17027--Pglym87\n  Fas2--Pglym87\n  Fas2--Pglym87\n  Mlc-c--Pglym87\n  Mlc-c--zip\n  Mlc-c--zip\n  Pglym78--Pglym87\n  Pglym87--zip\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Mlc-c--zip\n  Mlc-c--zip\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nNETWORK SUMMARY: 8 proteins, 17 interactions\n\nNew protein to integrate: TFAM\n\nPredict the interactions for TFAM:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG14232--TFAM\n  Mlc-c--TFAM\n  Pglym87--TFAM\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx\n\nTWO-HYBRID INTERACTIONS:\n  CCAP-R--CG1314\n  CG10301--CG1314\n  CG1314--CG15631\n  CG1314--CG6770\n  CG1314--CG9222\n  CG1314--Hakai\n  CG1314--dx\n  dx--dx\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, Hakai, RpS28b, dx\n\nTWO-HYBRID INTERACTIONS:\n  CCAP-R--CG1314\n  CG10301--CG1314\n  CG1314--CG15576\n  CG1314--CG15631\n  CG1314--CG6770\n  CG1314--CG9222\n  CG1314--Hakai\n  CG1314--RpS28b\n  CG1314--dx\n  dx--dx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dx--dx\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Kdm2, Rca1, TFAM, olf413"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Kdm2, Rca1, TFAM, olf413\n\nTWO-HYBRID INTERACTIONS:\n  Kdm2--olf413\n  Rca1--olf413\n  TFAM--olf413\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10321, CG15116, Oxp, rhi, rti"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10321, CG15116, Oxp, rhi, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10321--CG15116\n  CG15116--Oxp\n  CG15116--rhi\n  rhi--rhi\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15116--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n\nTWO-HYBRID INTERACTIONS:\n  CG11885--Sobp\n  Ndn--Sobp\n  Nplp2--Sobp\n  Sobp--rdo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpgrip1l--Sobp\n\nCO-FRACTIONATION INTERACTIONS:\n  Rpgrip1l--Sobp\n\nNAN INTERACTIONS:\n  Ser8--Sobp\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n\nTWO-HYBRID INTERACTIONS:\n  CG11885--Sobp\n  CG5059--CG5059\n  CG5059--Sobp\n  Ndn--Ndn\n  Ndn--Sobp\n  Nplp2--Sobp\n  Sobp--rdo\n  Sobp--so\n  Sobp--so\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpgrip1l--Sobp\n\nCO-FRACTIONATION INTERACTIONS:\n  Rpgrip1l--Sobp\n\nNAN INTERACTIONS:\n  Ser8--Sobp\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor\n- Network density: approximately 0.29\n- Hub proteins (highly connected): Atg8b, DOR\n- Total interactions: approximately 13"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Atg4a, Atg8b, CG11723, CG12576, CG13204, DOR, Ire1, Tbc1d15-17, dom, dor\n\nTWO-HYBRID INTERACTIONS:\n  Atg4a--Atg8b\n  Atg8b--CG11723\n  Atg8b--CG12576\n  Atg8b--CG13204\n  Atg8b--DOR\n  Atg8b--DOR\n  Atg8b--Tbc1d15-17\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Atg8b--dom\n  CG11723--dom\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Atg8b--DOR\n  Atg8b--dor\n  Atg8b--dor\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Atg8b--Ire1\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, Snr1, Socs36E, Srp68\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG18135\n  CG10979--CG18135\n  CG18135--CG8292\n  CG18135--Myo10A\n  CG18135--Ppn\n  CG18135--Snr1\n  CG18135--Socs36E\n  CG18135--Srp68\n  CG8292--Ppn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18135--Myo10A\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: RpS2\n\nPredict the interactions for RpS2:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG18135--RpS2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1142, Ent1, Tsp74F, Tsp96F\n\nTWO-HYBRID INTERACTIONS:\n  Ent1--Tsp74F\n  Tsp74F--Tsp96F\n\nNETWORK SUMMARY: 4 proteins, 2 interactions\n\nNew protein to integrate: CG3303\n\nPredict the interactions for CG3303:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1142--CG3303\n  CG3303--Ent1\n  CG3303--Tsp74F\n  CG3303--Tsp96F"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n- Network density: approximately 1.73\n- Hub proteins (highly connected): cdc2, CycA\n- Total interactions: approximately 78"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cks30A, Cks85A, CycA, CycB, CycB3, L, Skp2, cdc2, cort, rux\n\nTWO-HYBRID INTERACTIONS:\n  Cks30A--L\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Cks30A--Skp2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  Cks85A--Skp2\n  Cks85A--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cdc2\n  CycA--cort\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB--cdc2\n  CycB3--cdc2\n  CycB3--cdc2\n  Skp2--cdc2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--CycB\n  Cks30A--CycB3\n  Cks30A--cdc2\n  Cks30A--rux\n  Cks85A--CycA\n  Cks85A--CycB\n  Cks85A--CycB3\n  Cks85A--cdc2\n  Cks85A--rux\n  CycA--CycB\n  CycA--CycB3\n  CycA--cdc2\n  CycA--rux\n  CycB--CycB3\n  CycB--cdc2\n  CycB--rux\n  CycB3--cdc2\n  CycB3--rux\n  cdc2--rux\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CycA--cort\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Cks30A--Cks85A\n  Cks30A--CycA\n  Cks30A--cort\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--CycB\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycA--rux\n  CycB--cdc2\n  CycB--rux\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Cks30A--cdc2\n  Cks30A--cdc2\n  Cks85A--Skp2\n  CycA--CycB\n  CycA--cdc2\n  CycA--rux\n  CycB--cdc2\n  CycB--cdc2\n\nNETWORK SUMMARY: 10 proteins, 78 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10222, CG32683, CG3704, pbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG3704\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10222--pbl\n\nNETWORK SUMMARY: 4 proteins, 2 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10222, CG32683, CG3704, pbl\n\nTWO-HYBRID INTERACTIONS:\n  CG10222--CG32683\n  CG10222--CG3704\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG10222--pbl\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2\n- Network density: approximately 0.39\n- Hub proteins (highly connected): Eip55E, Dcp1\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11722, CG15067, CG34133, Dcp-1, Dcp1, Eip55E, Prx2540-2, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG11722--Eip55E\n  CG15067--Eip55E\n  Dcp1--Eip55E\n  Eip55E--Tango2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG34133--Eip55E\n  Eip55E--Prx2540-2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dcp-1--Eip55E\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Dcp-1--Eip55E\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Dcp1--Dcp1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcp1--Dcp1\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  Dcp1--Dcp1\n\nNETWORK SUMMARY: 8 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1142, CG3303, Ent1, Tsp74F, Tsp96F"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1142, CG3303, Ent1, Tsp74F, Tsp96F\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG3303\n  CG3303--Ent1\n  CG3303--Tsp74F\n  CG3303--Tsp96F\n  Ent1--Tsp74F\n  Tsp74F--Tsp96F\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG1486--CG4116\n  CG17666--CG4116\n  CG4116--CG9572\n  CG4116--CIAPIN1\n  CG4116--SmD1\n  CG4116--gro\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CIAPIN1--CIAPIN1\n  P32--P32\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1486, CG17666, CG4116, CG9572, CIAPIN1, P32, SmD1, fok, gro, loqs\n\nTWO-HYBRID INTERACTIONS:\n  CG1486--CG4116\n  CG17666--CG4116\n  CG4116--CG9572\n  CG4116--CIAPIN1\n  CG4116--P32\n  CG4116--P32\n  CG4116--SmD1\n  CG4116--fok\n  CG4116--gro\n  CG4116--loqs\n  loqs--loqs\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CIAPIN1--CIAPIN1\n  P32--P32\n  gro--gro\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n  loqs--loqs\n\nCO-FRACTIONATION INTERACTIONS:\n  gro--gro\n  gro--gro\n  gro--gro\n  loqs--loqs\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  CIAPIN1--CIAPIN1\n\nNETWORK SUMMARY: 10 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8\n- Network density: approximately 0.24\n- Hub proteins (highly connected): CG8248, CG5059\n- Total interactions: approximately 11"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13014, CG14905, CG34165, CG3652, CG5059, CG8116, CG8248, NimC1, Syx6, Syx8\n\nTWO-HYBRID INTERACTIONS:\n  CG13014--CG8248\n  CG14905--CG8248\n  CG14905--NimC1\n  CG34165--CG8248\n  CG3652--CG8248\n  CG5059--CG5059\n  CG5059--CG8248\n  CG8116--CG8248\n  CG8248--NimC1\n  CG8248--Syx6\n  CG8248--Syx8\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG14151, CG14317, CG2247, Rca1, TFAM, alph\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG14151, TFAM\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14151, CG14317, CG2247, Rca1, TFAM, alph\n\nTWO-HYBRID INTERACTIONS:\n  CG14151--CG14317\n  CG14151--CG2247\n  CG14151--Rca1\n  CG14151--TFAM\n  CG14151--alph\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10208, CG7564, CG9098, S6kII, Vap-33A, foxo, gig, x16\n\nTWO-HYBRID INTERACTIONS:\n  CG10208--CG7564\n  CG7564--CG9098\n  CG7564--x16\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG7564--Vap-33A\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--S6kII\n  CG7564--foxo\n  CG7564--gig\n  S6kII--gig\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG7564--x16\n\nNETWORK SUMMARY: 8 proteins, 9 interactions\n\nNew protein to integrate: rictor\n\nPredict the interactions for rictor:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC ENHANCEMENT INTERACTIONS:\n  foxo--rictor\n  foxo--rictor\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  foxo--rictor\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7564--rictor\n  Vap-33A--rictor\n  rictor--x16"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG13689, CG15908, CG31140, ste14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG13689, CG15908, CG31140, ste14\n\nTWO-HYBRID INTERACTIONS:\n  CG13689--ste14\n  CG15908--ste14\n  CG31140--ste14\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG31275, Pvf1, robl22E\n\nTWO-HYBRID INTERACTIONS:\n  CG31275--Pvf1\n\nNETWORK SUMMARY: 3 proteins, 1 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31275, Pvf1, robl22E\n\nTWO-HYBRID INTERACTIONS:\n  CG31275--Pvf1\n  CG31275--robl22E\n  CG31275--robl22E\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy\n\nTWO-HYBRID INTERACTIONS:\n  CG11448--CG8145\n  CG11448--CG8145\n  CG13775--CG8145\n  CG31224--CG8145\n  CG34334--CG8145\n  CG8145--CG9902\n  CG8145--HLH4C\n  CG8145--Moe\n  CG9902--toy\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy\n\nTWO-HYBRID INTERACTIONS:\n  CG11448--CG8145\n  CG11448--CG8145\n  CG13775--CG13775\n  CG13775--CG8145\n  CG31224--CG8145\n  CG34334--CG8145\n  CG8145--CG9902\n  CG8145--HLH4C\n  CG8145--Moe\n  CG8145--Rel\n  CG8145--toy\n  CG9902--toy\n  Moe--Moe\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11412, CG4065, CG5919, Jupiter\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG11412--CG5919\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11412, CG4065, CG5919, Jupiter\n\nTWO-HYBRID INTERACTIONS:\n  CG11412--CG4065\n  CG11412--CG4065\n  CG11412--CG5919\n  CG11412--Jupiter\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11337, CG13458, CG31121, CG5522, Cfp1, Hsc70-5, RpL14, aru, nito\n\nTWO-HYBRID INTERACTIONS:\n  CG11337--CG31121\n  CG13458--CG31121\n  CG13458--nito\n  CG31121--CG5522\n  CG31121--Cfp1\n  CG31121--Hsc70-5\n  CG31121--RpL14\n  CG31121--aru\n  CG31121--nito\n  CG5522--aru\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13551, CG30497, CG8032, Nup54, Tektin-A, dm, mrn, pUf68\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  dm--pUf68\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dm--pUf68\n  dm--pUf68\n\nNETWORK SUMMARY: 8 proteins, 3 interactions\n\nNew protein to integrate: GstT4\n\nPredict the interactions for GstT4:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG13551--GstT4\n  CG30497--GstT4\n  CG8032--GstT4\n  GstT4--Nup54\n  GstT4--Tektin-A\n  GstT4--dm\n  GstT4--mrn\n  GstT4--pUf68"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG1635, CG1638, CG31961, CG7878, Vps37B\n- Network density: approximately 0.40\n- Hub proteins (highly connected): CG1638, Vps37B\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1635, CG1638, CG31961, CG7878, Vps37B\n\nTWO-HYBRID INTERACTIONS:\n  CG1635--CG1638\n  CG1638--CG31961\n  CG1638--CG7878\n  CG1638--Vps37B\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11125, CG13023, CG13868, Ssu72"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13023, CG13868, Ssu72\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG13023--CG13868\n  CG13868--Ssu72\n  Ssu72--Ssu72\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Aats-gln, CG14207, Drep-1, Rtnl1, SpdS\n\nTWO-HYBRID INTERACTIONS:\n  Aats-gln--SpdS\n  CG14207--Drep-1\n  CG14207--SpdS\n  Rtnl1--Rtnl1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Drep-1--SpdS\n  Rtnl1--Rtnl1\n  Rtnl1--SpdS\n  Rtnl1--SpdS\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Drep-1--Drep-1\n\nCO-FRACTIONATION INTERACTIONS:\n  Drep-1--Drep-1\n\nNETWORK SUMMARY: 5 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Best2, CG18746, CG6843, CG8833, Leash\n- Network density: approximately 0.70\n- Hub proteins (highly connected): CG8833, CG6843\n- Total interactions: approximately 7"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Best2, CG18746, CG6843, CG8833, Leash\n\nTWO-HYBRID INTERACTIONS:\n  Best2--CG8833\n  CG6843--CG6843\n  CG6843--CG8833\n  Leash--Leash\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG18746--CG6843\n  CG18746--CG8833\n  CG8833--Leash\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG10576, CTPsyn\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10576, CG2862, CG30339, CG9083, CTPsyn, Es2, dUTPase, so\n\nTWO-HYBRID INTERACTIONS:\n  CG10576--CG9083\n  CG10576--Es2\n  CG10576--so\n  CG9083--so\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10576--CG2862\n  CG10576--CG30339\n  CG10576--dUTPase\n\nCO-FRACTIONATION INTERACTIONS:\n  dUTPase--dUTPase\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CTPsyn--CTPsyn\n  dUTPase--dUTPase\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10576--CTPsyn\n  CTPsyn--CTPsyn\n\nNETWORK SUMMARY: 8 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--spartin\n  CG31038--spartin\n  CG33144--spartin\n  Gas8--spartin\n  nmdyn-D7--spartin\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  spartin--wit\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  futsch--spartin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eps-15--spartin\n  Rab18--spartin\n  futsch--futsch\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10103, CG31038, CG33144, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--spartin\n  CG31038--spartin\n  CG33144--spartin\n  Gas8--spartin\n  nmdyn-D7--spartin\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n  spartin--wit\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eps-15--spartin\n  Eps-15--spartin\n  Rab18--spartin\n  futsch--futsch\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab18--spartin\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG6656, Cyp28d1, EDTP, cry\n\nTWO-HYBRID INTERACTIONS:\n  Cyp28d1--EDTP\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Cyp28d1--cry\n\nNETWORK SUMMARY: 4 proteins, 3 interactions\n\nNew protein to integrate: Cyp28d2\n\nPredict the interactions for Cyp28d2:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CG6656--Cyp28d2\n  Cyp28d1--Cyp28d2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg\n\nTWO-HYBRID INTERACTIONS:\n  CG7200--eRF1\n  Sap47--eRF1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n  Egfr--arm\n  Egfr--arm\n  smo--smo\n  smo--smo\n  smo--smo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Egfr--eRF1\n  arm--eRF1\n  eRF1--shn\n  eRF1--wg\n  smo--wg\n\nNETWORK SUMMARY: 10 proteins, 14 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG7200, DnaJ-1, Egfr, Sap47, arm, eRF1, peb, shn, smo, wg\n\nTWO-HYBRID INTERACTIONS:\n  CG7200--eRF1\n  DnaJ-1--Sap47\n  DnaJ-1--eRF1\n  Sap47--eRF1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n  Egfr--arm\n  Egfr--arm\n  smo--smo\n  smo--smo\n  smo--smo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Egfr--Egfr\n  Egfr--Egfr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Egfr--eRF1\n  arm--eRF1\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  arm--wg\n  eRF1--peb\n  eRF1--shn\n  eRF1--wg\n  smo--wg\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Egfr--arm\n  Egfr--arm\n  Egfr--peb\n  eRF1--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nNETWORK SUMMARY: 10 proteins, 33 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10426, CG3309, CG7156, Nha1, slgA, vret"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10426, CG3309, CG7156, Nha1, slgA, vret\n\nTWO-HYBRID INTERACTIONS:\n  CG10426--CG3309\n  CG3309--CG7156\n  CG3309--Nha1\n  CG3309--slgA\n  CG3309--vret\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG7879\n  CG7879--CG8407\n  CG7879--CG9426\n  CG7879--Pli\n  CG7879--Su(H)\n  CG9426--CG9426\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7879--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Pli--Pli\n\nNETWORK SUMMARY: 10 proteins, 10 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11266, CG12470, CG30122, CG7879, CG8407, CG9426, Fas2, Pli, Su(H), Vps35\n\nTWO-HYBRID INTERACTIONS:\n  CG11266--CG11266\n  CG11266--CG7879\n  CG12470--CG7879\n  CG30122--CG30122\n  CG30122--CG7879\n  CG7879--CG8407\n  CG7879--CG9426\n  CG7879--Pli\n  CG7879--Su(H)\n  CG7879--Vps35\n  CG9426--CG9426\n  Pli--Pli\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7879--Fas2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Pli--Pli\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy\n- Network density: approximately 0.36\n- Hub proteins (highly connected): CG8145, Rel\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11448, CG13775, CG31224, CG34334, CG8145, CG9902, HLH4C, Moe, Rel, toy\n\nTWO-HYBRID INTERACTIONS:\n  CG11448--CG8145\n  CG11448--CG8145\n  CG13775--CG13775\n  CG13775--CG8145\n  CG31224--CG8145\n  CG34334--CG8145\n  CG8145--CG9902\n  CG8145--HLH4C\n  CG8145--Moe\n  CG8145--Rel\n  CG8145--toy\n  CG9902--toy\n  Moe--Moe\n  Rel--Rel\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rel--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG33017--Gtp-bp\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gtp-bp--Orco\n  Gtp-bp--S6kII\n  Gtp-bp--SrpRbeta\n  Gtp-bp--gig\n  Gtp-bp--rictor\n\nFRET INTERACTIONS:\n  Orco--Orco\n  Orco--Orco\n\nPCA INTERACTIONS:\n  Orco--Orco\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2046, CG33017, Gtp-bp, Orco, S6kII, SrpRbeta, TwdlE, gig, obst-E, rictor\n\nTWO-HYBRID INTERACTIONS:\n  CG2046--Gtp-bp\n  CG33017--Gtp-bp\n  Gtp-bp--TwdlE\n  Gtp-bp--obst-E\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Gtp-bp--Orco\n  Gtp-bp--S6kII\n  Gtp-bp--SrpRbeta\n  Gtp-bp--gig\n  Gtp-bp--rictor\n  S6kII--gig\n\nFRET INTERACTIONS:\n  Orco--Orco\n  Orco--Orco\n\nPCA INTERACTIONS:\n  Orco--Orco\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo\n- Network density: approximately 1.29\n- Hub proteins (highly connected): smo, Trs20\n- Total interactions: approximately 27"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, Cpr64Ac, SIDL, Trs20, Trs31, gry, smo\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  Cpr64Ac--Trs20\n  Trs20--Trs31\n  Trs20--Trs31\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trs20--smo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 7 proteins, 27 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10103, CG31038, Eps-15, Gas8, Rab18, futsch, nmdyn-D7, spartin, wit\n\nTWO-HYBRID INTERACTIONS:\n  CG10103--spartin\n  CG31038--spartin\n  Gas8--spartin\n  nmdyn-D7--spartin\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n  spartin--wit\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  futsch--spartin\n  futsch--spartin\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Eps-15--spartin\n  Eps-15--spartin\n  Rab18--spartin\n  futsch--futsch\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rab18--spartin\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: CG33144\n\nPredict the interactions for CG33144:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG33144--spartin"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10565, CG11852, CG17819\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG11852\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11852--CG17819\n\nNETWORK SUMMARY: 3 proteins, 2 interactions\n\nNew protein to integrate: CG8508\n\nPredict the interactions for CG8508:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG11852--CG8508"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG17612, CG32121, CG8907, Snr1, Trl, Ubx, bab1, hts, vari\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--bab1\n  CG32121--bab1\n  CG8907--bab1\n  Snr1--bab1\n  Trl--Trl\n  Trl--bab1\n  bab1--bab1\n  bab1--hts\n  bab1--vari\n\nCO-LOCALIZATION INTERACTIONS:\n  Trl--Trl\n  hts--hts\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Trl--Ubx\n  Trl--Ubx\n  Trl--Ubx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Trl--Trl\n  hts--hts\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Trl--Trl\n  Trl--Trl\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Snr1--Trl\n\nPCA INTERACTIONS:\n  CG32121--bab1\n  Trl--Ubx\n  Ubx--bab1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  hts--hts\n\nNETWORK SUMMARY: 9 proteins, 25 interactions\n\nNew protein to integrate: ttk\n\nPredict the interactions for ttk:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Trl--ttk\n  ttk--ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG17612--ttk\n  CG32121--ttk\n  Trl--ttk\n  Trl--ttk\n  Trl--ttk\n  bab1--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  Trl--ttk\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nPCA INTERACTIONS:\n  CG32121--ttk\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Trl--ttk"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG5890, SIDL, SKIP, Shal, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG5890--Shal\n  SIDL--Shal\n  Shal--Tango2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Shal\n  SIDL--Shal\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5890, SIDL, SKIP, Shal, Tango2\n\nTWO-HYBRID INTERACTIONS:\n  CG5890--Shal\n  SIDL--Shal\n  SKIP--Shal\n  Shal--Tango2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  SIDL--Shal\n  SIDL--Shal\n  SKIP--Shal\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AdenoK, CG17187, Taf12\n\nTWO-HYBRID INTERACTIONS:\n  AdenoK--Taf12\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  AdenoK--CG17187\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Taf12--Taf12\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: Glycogenin\n\nPredict the interactions for Glycogenin:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  AdenoK--Glycogenin\n  Glycogenin--Glycogenin"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: A16, Indy, PHDP, RASSF8, RpS3, Sirup, Zasp52, Zasp66, dgt4\n\nTWO-HYBRID INTERACTIONS:\n  RASSF8--RASSF8\n  RASSF8--Zasp66\n  RpS3--Zasp52\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp52--Zasp66\n  Zasp52--Zasp66\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Zasp52--Zasp66\n\nPCA INTERACTIONS:\n  Zasp52--Zasp52\n  Zasp52--Zasp66\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Zasp52--Zasp52\n\nNETWORK SUMMARY: 9 proteins, 14 interactions\n\nNew protein to integrate: Zasp67\n\nPredict the interactions for Zasp67:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  A16--Zasp67\n  Indy--Zasp67\n  PHDP--Zasp67\n  RASSF8--Zasp67\n  RpS3--Zasp67\n  Sirup--Zasp67\n  Zasp52--Zasp67\n  Zasp67--dgt4\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Zasp66--Zasp67\n  Zasp66--Zasp67"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10869, CG5376, CG6425, CG8128, Klc, dos\n\nTWO-HYBRID INTERACTIONS:\n  CG5376--CG5376\n  Klc--Klc\n\nNETWORK SUMMARY: 6 proteins, 2 interactions\n\nNew protein to integrate: nonA-l\n\nPredict the interactions for nonA-l:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10869--nonA-l\n  CG5376--nonA-l\n  CG6425--nonA-l\n  CG8128--nonA-l\n  Klc--nonA-l\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  dos--nonA-l"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif\n- Network density: approximately 0.33\n- Hub proteins (highly connected): CG42676, CG5376\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG11164, CG15631, CG3548, CG42676, CG5376, Su(dx), prd, slif\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG42676\n  CG11164--CG42676\n  CG15631--CG42676\n  CG15631--CG5376\n  CG3548--CG3548\n  CG42676--CG5376\n  CG42676--Su(dx)\n  CG42676--prd\n  CG42676--slif\n  CG5376--CG5376\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3548--CG42676\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Su(dx)--Su(dx)\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3709, CG4325, CG7407, CG9288, Ef1alpha48D, MBD-R2\n\nTWO-HYBRID INTERACTIONS:\n  CG9288--Ef1alpha48D\n  CG9288--MBD-R2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG3709--CG7407\n  CG3709--CG9288\n  CG4325--CG9288\n  CG7407--CG9288\n\nNETWORK SUMMARY: 6 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11180, CG14302, CG31122, CG3548, Sap47, Tsc1, foxo, hpo, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG11180--CG14302\n  CG11180--CG31122\n  CG11180--CG3548\n  CG11180--Sap47\n  CG11180--hpo\n  CG11180--spn-A\n  CG3548--CG3548\n  hpo--hpo\n  spn-A--spn-A\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Tsc1--foxo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n  hpo--hpo\n\nFRET INTERACTIONS:\n  hpo--hpo\n\nPCA INTERACTIONS:\n  hpo--hpo\n  hpo--hpo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11180--Tsc1\n  CG11180--foxo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tsc1--hpo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  hpo--hpo\n\nNETWORK SUMMARY: 9 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG17652, CG4617, CG6733, dyn-p25\n\nTWO-HYBRID INTERACTIONS:\n  CG17652--CG4617\n  CG17652--CG6733\n  CG4617--CG4617\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17652, CG4617, CG6733, dyn-p25\n\nTWO-HYBRID INTERACTIONS:\n  CG17652--CG4617\n  CG17652--CG6733\n  CG17652--dyn-p25\n  CG4617--CG4617\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10298, hdm, mei-217, rec, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  spn-A--spn-A\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hdm--rec\n  rec--spn-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-217--rec\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10298, hdm, mei-217, rec, spn-A\n\nTWO-HYBRID INTERACTIONS:\n  CG10298--rec\n  spn-A--spn-A\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  hdm--rec\n  rec--spn-A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mei-217--rec\n  mei-217--rec\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo\n\nTWO-HYBRID INTERACTIONS:\n  Cdlc2--ko\n  cactin--ko\n  ctp--ko\n  ko--polo\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12470, CG8407, Cdlc2, cactin, ctp, ko, polo\n\nTWO-HYBRID INTERACTIONS:\n  CG12470--ko\n  CG8407--ko\n  Cdlc2--ko\n  cactin--ko\n  ctp--ko\n  ko--polo\n  ko--polo\n\nCO-FRACTIONATION INTERACTIONS:\n  ctp--ctp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  polo--polo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  polo--polo\n\nFRET INTERACTIONS:\n  polo--polo\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ctp--ctp\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta\n\nTWO-HYBRID INTERACTIONS:\n  Bsg--CG11404\n  CG11269--CG11404\n  CG11404--CG1275\n  CG11404--SsRbeta\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta\n\nTWO-HYBRID INTERACTIONS:\n  Bsg--CG11404\n  CG11269--CG11404\n  CG11404--CG1275\n  CG11404--Desi\n  CG11404--SsRbeta\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A\n- Network density: approximately 0.76\n- Hub proteins (highly connected): HIST1H1E, HIST1H4A\n- Total interactions: approximately 34"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: COL23A1, COLGALT1, EXOSC8, HIST1H1E, HIST1H4A, HNRNPL, LSM8, PLOD2, PLOD3, RPL10A\n\nTWO-HYBRID INTERACTIONS:\n  COL23A1--EXOSC8\n  COL23A1--LSM8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  EXOSC8--EXOSC8\n  HNRNPL--HNRNPL\n\nDOSAGE RESCUE INTERACTIONS:\n  LSM8--LSM8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  HNRNPL--HNRNPL\n  PLOD2--PLOD2\n  PLOD3--PLOD3\n\nCO-FRACTIONATION INTERACTIONS:\n  COLGALT1--PLOD2\n  COLGALT1--PLOD3\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  COL23A1--COLGALT1\n  COL23A1--PLOD2\n  COL23A1--PLOD3\n  COLGALT1--PLOD3\n  HIST1H1E--HIST1H4A\n  HIST1H1E--RPL10A\n  HIST1H1E--RPL10A\n  HIST1H4A--HNRNPL\n  HIST1H4A--RPL10A\n  PLOD2--PLOD3\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  COL23A1--HNRNPL\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  COL23A1--HIST1H1E\n  COL23A1--HIST1H4A\n  COL23A1--RPL10A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H1E\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H1E--HIST1H4A\n  HIST1H4A--HIST1H4A\n  HIST1H4A--HIST1H4A\n  RPL10A--RPL10A\n\nNETWORK SUMMARY: 10 proteins, 34 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10164, CG4335, CG7488, vir-1\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--CG7488\n  CG4335--CG4335\n  CG4335--CG7488\n  CG4335--CG7488\n  CG7488--vir-1\n\nNETWORK SUMMARY: 4 proteins, 5 interactions\n\nNew protein to integrate: Traf6\n\nPredict the interactions for Traf6:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7488--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n  Traf6--Traf6\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Traf6--Traf6\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Traf6--Traf6"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe\n\nTWO-HYBRID INTERACTIONS:\n  Arr1--CG11449\n  CG11449--CG31365\n  CG11449--Grip71\n  CG11449--Hsp68\n  CG11449--krz\n  CG11449--nuf\n  CG11449--poe\n  CG31365--CG31365\n  M1BP--M1BP\n\nNETWORK SUMMARY: 10 proteins, 9 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arr1, CG11449, CG31365, Grip71, Hsp68, M1BP, Ndc1, krz, nuf, poe\n\nTWO-HYBRID INTERACTIONS:\n  Arr1--CG11449\n  Arr1--M1BP\n  CG11449--CG31365\n  CG11449--Grip71\n  CG11449--Hsp68\n  CG11449--M1BP\n  CG11449--Ndc1\n  CG11449--krz\n  CG11449--nuf\n  CG11449--poe\n  CG31365--CG31365\n  M1BP--M1BP\n  nuf--nuf\n\nNETWORK SUMMARY: 10 proteins, 13 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11885, CG5059, Ndn, Nplp2, Rpgrip1l, Ser8, Sobp, rdo, so\n\nTWO-HYBRID INTERACTIONS:\n  CG11885--Sobp\n  CG5059--CG5059\n  CG5059--Sobp\n  Ndn--Ndn\n  Ndn--Sobp\n  Nplp2--Sobp\n  Sobp--rdo\n  Sobp--so\n  Sobp--so\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Rpgrip1l--Sobp\n\nCO-FRACTIONATION INTERACTIONS:\n  Rpgrip1l--Sobp\n\nNAN INTERACTIONS:\n  Ser8--Sobp\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Klp3A, feo, kek3, neb, sip2\n\nTWO-HYBRID INTERACTIONS:\n  feo--kek3\n  feo--sip2\n  feo--sip2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Klp3A--feo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Klp3A--feo\n  feo--neb\n  feo--sip2\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  feo--sip2\n  feo--sip2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  feo--sip2\n\nNETWORK SUMMARY: 5 proteins, 10 interactions\n\nNew protein to integrate: pav\n\nPredict the interactions for pav:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-WESTERN INTERACTIONS:\n  feo--pav\n  neb--pav\n  neb--pav\n\nCO-FRACTIONATION INTERACTIONS:\n  pav--pav\n\nCO-LOCALIZATION INTERACTIONS:\n  pav--pav\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  pav--pav"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Arp1, CG13741, CG4983, alpha4GT1, mahj, ms(3)76Ca\n\nTWO-HYBRID INTERACTIONS:\n  Arp1--CG4983\n  CG13741--CG4983\n  CG4983--mahj\n  CG4983--ms(3)76Ca\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4983--alpha4GT1\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20\n\nTWO-HYBRID INTERACTIONS:\n  CG10075--CG11322\n  CG10075--CG9911\n  CG10075--Nc73EF\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10075--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: C15, CG10075, CG11322, CG9911, Nc73EF, Tom20\n\nTWO-HYBRID INTERACTIONS:\n  C15--CG10075\n  CG10075--CG11322\n  CG10075--CG9911\n  CG10075--Nc73EF\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG10075--Tom20\n  Nc73EF--Tom20\n  Tom20--Tom20\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG17018, CG31064, CG3309, CG7156, Prosalpha5, ldbr\n\nTWO-HYBRID INTERACTIONS:\n  CG17018--CG7156\n  CG31064--CG31064\n  CG31064--CG7156\n  CG3309--CG7156\n  CG7156--Prosalpha5\n  CG7156--Prosalpha5\n  CG7156--ldbr\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Bap60, CG11486, CG13510, CG8907, Thor, eIF4E-3, eIF4G, eIF4G2, mxt\n\nTWO-HYBRID INTERACTIONS:\n  Bap60--CG11486\n  Bap60--CG8907\n  Bap60--eIF4E-3\n  CG11486--eIF4E-3\n  CG11486--eIF4E-3\n  CG13510--eIF4E-3\n  CG8907--eIF4E-3\n  Thor--eIF4E-3\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--mxt\n  eIF4E-3--mxt\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G\n  eIF4E-3--eIF4G2\n  eIF4E-3--eIF4G2\n\nNETWORK SUMMARY: 9 proteins, 16 interactions\n\nNew protein to integrate: TwdlE\n\nPredict the interactions for TwdlE:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  TwdlE--eIF4E-3"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n- Network density: approximately 0.58\n- Hub proteins (highly connected): GRB2, ABI3BP\n- Total interactions: approximately 26"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ABI3BP, CBX1, FZD5, GOT1, GRB2, GRK5, MBNL1, SPDL1, SPTBN1, TIMP2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  CBX1--CBX1\n  GRB2--GRB2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CBX1--CBX1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  CBX1--CBX1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  GRK5--GRK5\n\nTWO-HYBRID INTERACTIONS:\n  ABI3BP--CBX1\n  ABI3BP--FZD5\n  ABI3BP--GOT1\n  ABI3BP--GRB2\n  ABI3BP--MBNL1\n  GRB2--SPTBN1\n  SPDL1--SPDL1\n  SPTBN1--SPTBN1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  ABI3BP--GRK5\n  ABI3BP--SPDL1\n  GOT1--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRB2--GRB2\n  GRK5--SPTBN1\n  SPDL1--SPTBN1\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  ABI3BP--SPTBN1\n  SPTBN1--SPTBN1\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  ABI3BP--TIMP2\n  TIMP2--TIMP2\n\nNETWORK SUMMARY: 10 proteins, 26 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n- Network density: approximately 0.29\n- Hub proteins (highly connected): CG5866, PlexA\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Acp62F, CG13196, CG17666, CG43367, CG5866, NimC1, PlexA\n\nTWO-HYBRID INTERACTIONS:\n  Acp62F--CG5866\n  CG13196--CG5866\n  CG17666--CG5866\n  CG43367--CG5866\n  CG5866--NimC1\n  CG5866--PlexA\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10570, CG1461, CG9578, Cpr73D, Vmat\n- Network density: approximately 0.60\n- Hub proteins (highly connected): CG10570, CG1461\n- Total interactions: approximately 6"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10570, CG1461, CG9578, Cpr73D, Vmat\n\nTWO-HYBRID INTERACTIONS:\n  CG10570--CG1461\n  CG10570--CG9578\n  CG10570--Cpr73D\n  CG10570--Vmat\n  CG1461--CG1461\n  CG9578--CG9578\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10465, CG10570, CG17162, CG17325, CG9578, Pp2B-14D, Pph13, Strn-Mlck, mts\n\nTWO-HYBRID INTERACTIONS:\n  CG10465--CG10465\n  CG10465--CG10465\n  CG10465--CG9578\n  CG10570--CG9578\n  CG17162--CG9578\n  CG17162--Pp2B-14D\n  CG17325--CG9578\n  CG9578--CG9578\n  CG9578--Pp2B-14D\n  CG9578--Pph13\n  CG9578--Strn-Mlck\n  CG9578--mts\n\nNETWORK SUMMARY: 9 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz\n- Network density: approximately 0.64\n- Hub proteins (highly connected): Ppp1r9b, Kctd13\n- Total interactions: approximately 29"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Actb, CG17344, Dmtn, Golga2, Kctd13, Ppp1r9b, Prkaca, Snca, Usp7, Ywhaz\n\nTWO-HYBRID INTERACTIONS:\n  CG17344--Dmtn\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Actb--Kctd13\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Actb--Ppp1r9b\n  Dmtn--Kctd13\n  Dmtn--Ppp1r9b\n  Dmtn--Usp7\n  Dmtn--Ywhaz\n  Kctd13--Kctd13\n  Kctd13--Ppp1r9b\n  Kctd13--Prkaca\n  Kctd13--Usp7\n  Kctd13--Ywhaz\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Ppp1r9b\n  Ppp1r9b--Snca\n  Ppp1r9b--Ywhaz\n  Ppp1r9b--Ywhaz\n  Usp7--Usp7\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Ppp1r9b--Ppp1r9b\n\nCO-FRACTIONATION INTERACTIONS:\n  Actb--Dmtn\n  Dmtn--Golga2\n  Dmtn--Prkaca\n  Dmtn--Snca\n  Snca--Snca\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  Kctd13--Kctd13\n  Ppp1r9b--Ppp1r9b\n  Usp7--Usp7\n\nNETWORK SUMMARY: 10 proteins, 29 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1\n\nTWO-HYBRID INTERACTIONS:\n  CG3740--T48\n  CG5059--CG5059\n  CG5059--T48\n  T48--kermit\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  T48--l(2)gd1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  RhoGEF2--T48\n  RhoGEF2--T48\n  egl--egl\n  egl--egl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  T48--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68\n\nTWO-HYBRID INTERACTIONS:\n  CG1092--CG8187\n  CG11267--CG8187\n  CG8187--RpL10\n  CG8187--RpL37a\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL10--RpL37a\n\nNETWORK SUMMARY: 7 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1092, CG11267, CG18815, CG8187, RpL10, RpL37a, mei-W68\n\nTWO-HYBRID INTERACTIONS:\n  CG1092--CG8187\n  CG11267--CG8187\n  CG18815--CG8187\n  CG8187--RpL10\n  CG8187--RpL37a\n  CG8187--mei-W68\n\nCO-FRACTIONATION INTERACTIONS:\n  RpL10--RpL37a\n\nNETWORK SUMMARY: 7 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1\n- Network density: approximately 0.57\n- Hub proteins (highly connected): egl, T48\n- Total interactions: approximately 12"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG3740, CG5059, RhoGEF2, T48, egl, kermit, l(2)gd1\n\nTWO-HYBRID INTERACTIONS:\n  CG3740--T48\n  CG5059--CG5059\n  CG5059--T48\n  T48--kermit\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  T48--l(2)gd1\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  RhoGEF2--T48\n  RhoGEF2--T48\n  egl--egl\n  egl--egl\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  T48--egl\n  egl--egl\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  egl--egl\n\nNETWORK SUMMARY: 7 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11534, CG12985, CG8134, Rab5"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11534, CG12985, CG8134, Rab5\n\nTWO-HYBRID INTERACTIONS:\n  CG11534--CG8134\n  CG12985--CG12985\n  CG12985--CG8134\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8134--Rab5\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11125, CG13023, CG13868, Ssu72\n- Network density: approximately 0.67\n- Hub proteins (highly connected): CG13868, Ssu72\n- Total interactions: approximately 4"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11125, CG13023, CG13868, Ssu72\n\nTWO-HYBRID INTERACTIONS:\n  CG11125--CG13868\n  CG13023--CG13868\n  CG13868--Ssu72\n  Ssu72--Ssu72\n\nNETWORK SUMMARY: 4 proteins, 4 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG31275, Pvf1, robl22E\n- Network density: approximately 1.00\n- Hub proteins (highly connected): CG31275, robl22E\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG31275, Pvf1, robl22E\n\nTWO-HYBRID INTERACTIONS:\n  CG31275--Pvf1\n  CG31275--robl22E\n  CG31275--robl22E\n\nNETWORK SUMMARY: 3 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--Tollo\n  CG9133--Tollo\n  CG9467--Tollo\n  Su(var)3-9--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dredd--Dredd\n  Rel--Rel\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dredd--Rel\n  Dredd--Tollo\n  Dredd--Tollo\n  Rel--Tollo\n  Rel--Tollo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tollo--dpp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Dredd--Rel\n  Dredd--Rel\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dredd--Dredd\n\nNETWORK SUMMARY: 10 proteins, 15 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: 18w, CG10927, CG9133, CG9467, Dredd, Rel, Su(var)3-9, Toll-7, Tollo, dpp\n\nTWO-HYBRID INTERACTIONS:\n  CG10927--Tollo\n  CG9133--Tollo\n  CG9467--Tollo\n  Rel--Rel\n  Su(var)3-9--Tollo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Dredd--Dredd\n  Rel--Rel\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Dredd--Rel\n  Dredd--Rel\n  Dredd--Tollo\n  Dredd--Tollo\n  Rel--Tollo\n  Rel--Tollo\n  Toll-7--Tollo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Tollo--dpp\n  Tollo--dpp\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Dredd--Dredd\n  Dredd--Rel\n  Dredd--Rel\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Rel--Rel\n\nCO-LOCALIZATION INTERACTIONS:\n  18w--Tollo\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dredd--Dredd\n\nNETWORK SUMMARY: 10 proteins, 22 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG4461\n  CG30324--CG4461\n  CG4461--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4461--HtrA2\n\nNETWORK SUMMARY: 6 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10051, CG30324, CG4461, Hsp60, HtrA2, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG10051--CG4461\n  CG30324--CG4461\n  CG4461--krz\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG4461--Hsp60\n  CG4461--HtrA2\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG15098, CG17186, CG3880, N, fng, fzy, toe\n\nTWO-HYBRID INTERACTIONS:\n  CG17186--toe\n  CG3880--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--fng\n  N--fng\n  N--fng\n  N--fng\n  N--toe\n  fng--toe\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  N--fng\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-FRACTIONATION INTERACTIONS:\n  N--N\n  N--N\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG15098--toe\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  fzy--toe\n\nFRET INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-LOCALIZATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nCO-PURIFICATION INTERACTIONS:\n  N--N\n  N--N\n  N--N\n  N--N\n  N--N\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  N--N\n  N--N\n\nPCA INTERACTIONS:\n  N--N\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  N--N\n  N--N\n\nPROTEIN-RNA INTERACTIONS:\n  N--N\n\nNETWORK SUMMARY: 7 proteins, 131 interactions\n\nNew protein to integrate: eyg\n\nPredict the interactions for eyg:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  N--eyg\n  N--eyg\n  N--eyg\n  eyg--fng\n  eyg--toe"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG9986, Jon66Cii, RASSF8, lama, ttk\n- Network density: approximately 1.40\n- Hub proteins (highly connected): ttk, lama\n- Total interactions: approximately 14"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG9986, Jon66Cii, RASSF8, lama, ttk\n\nTWO-HYBRID INTERACTIONS:\n  CG9986--lama\n  Jon66Cii--lama\n  RASSF8--RASSF8\n  RASSF8--lama\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  lama--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 5 proteins, 14 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG11190, CG4406, CG5973, PIG-S, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--CG4406\n  CG11190--PIG-S\n  CG11190--rti\n\nNETWORK SUMMARY: 5 proteins, 4 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11190, CG4406, CG5973, PIG-S, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG11190--CG5973\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG11190--CG4406\n  CG11190--PIG-S\n  CG11190--rti\n  rti--rti\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG18135\n  CG18135--CG8292\n  CG18135--Myo10A\n  CG18135--Ppn\n  CG18135--Socs36E\n  CG18135--Srp68\n  CG8292--Ppn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18135--Myo10A\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: AstC-R1, CG10979, CG18135, CG8292, Myo10A, Ppn, RpS2, Snr1, Socs36E, Srp68\n\nTWO-HYBRID INTERACTIONS:\n  AstC-R1--CG18135\n  CG10979--CG18135\n  CG18135--CG8292\n  CG18135--Myo10A\n  CG18135--Ppn\n  CG18135--RpS2\n  CG18135--Snr1\n  CG18135--Socs36E\n  CG18135--Srp68\n  CG8292--Ppn\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18135--Myo10A\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bsg, CG11269, CG11404, CG1275, Desi, SsRbeta\n\nTWO-HYBRID INTERACTIONS:\n  Bsg--CG11404\n  CG11269--CG11404\n  CG11404--CG1275\n  CG11404--Desi\n  CG11404--SsRbeta\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG10750--Pglym87\n  CG14232--Pglym87\n  Mlc-c--TFAM\n  Pglym87--TFAM\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17027--Pglym87\n  Fas2--Pglym87\n  Fas2--Pglym87\n  Pglym78--Pglym87\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Mlc-c--zip\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 9 proteins, 13 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10750, CG14232, CG17027, Fas2, Mlc-c, Pglym78, Pglym87, TFAM, zip\n\nTWO-HYBRID INTERACTIONS:\n  CG10750--Pglym87\n  CG14232--Pglym87\n  CG14232--TFAM\n  Mlc-c--TFAM\n  Pglym87--TFAM\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG17027--Pglym78\n  CG17027--Pglym87\n  Fas2--Pglym87\n  Fas2--Pglym87\n  Mlc-c--Pglym87\n  Mlc-c--zip\n  Mlc-c--zip\n  Pglym78--Pglym87\n  Pglym87--zip\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Fas2--Fas2\n  Mlc-c--zip\n  Mlc-c--zip\n  zip--zip\n\nCO-FRACTIONATION INTERACTIONS:\n  zip--zip\n\nFRET INTERACTIONS:\n  zip--zip\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  TFAM--TFAM\n\nNETWORK SUMMARY: 9 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10911, CG2982, CG42336, Pex23"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10911, CG2982, CG42336, Pex23\n\nTWO-HYBRID INTERACTIONS:\n  CG10911--CG42336\n  CG2982--CG42336\n  CG42336--Pex23\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n- Network density: approximately 0.38\n- Hub proteins (highly connected): IntS10, Orc6\n- Total interactions: approximately 17"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG5062, CG8128, Cul2, IntS10, Nek2, Orc6, PGAP5, dap, png, slmo\n\nTWO-HYBRID INTERACTIONS:\n  CG5062--IntS10\n  CG8128--IntS10\n  Cul2--IntS10\n  Cul2--dap\n  IntS10--Nek2\n  IntS10--Orc6\n  IntS10--PGAP5\n  IntS10--dap\n  IntS10--png\n  IntS10--slmo\n  Nek2--Nek2\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dap--png\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  png--png\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Orc6--Orc6\n\nCO-FRACTIONATION INTERACTIONS:\n  Orc6--Orc6\n\nFRET INTERACTIONS:\n  Orc6--Orc6\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Orc6--Orc6\n\nNETWORK SUMMARY: 10 proteins, 17 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CDHR2, FBXO2, HIP1R, LAMB1, MAST2, NF1, RPS6KA2, SURF1, TBCD\n\nTWO-HYBRID INTERACTIONS:\n  CDHR2--MAST2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CDHR2--MAST2\n\nCO-LOCALIZATION INTERACTIONS:\n  CDHR2--MAST2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RPS6KA2--RPS6KA2\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--FBXO2\n  CDHR2--HIP1R\n  CDHR2--LAMB1\n  CDHR2--NF1\n  CDHR2--RPS6KA2\n  CDHR2--SURF1\n  CDHR2--TBCD\n  FBXO2--LAMB1\n  RPS6KA2--RPS6KA2\n\nNETWORK SUMMARY: 9 proteins, 13 interactions\n\nNew protein to integrate: TMTC2\n\nPredict the interactions for TMTC2:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  CDHR2--TMTC2"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10959, CG13151, CG15916, CG2129, CG2199"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10959, CG13151, CG15916, CG2129, CG2199\n\nTWO-HYBRID INTERACTIONS:\n  CG10959--CG13151\n  CG13151--CG15916\n  CG13151--CG2129\n  CG13151--CG2199\n  CG2129--CG2129\n  CG2129--CG2129\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG13151--CG2129\n\nNETWORK SUMMARY: 5 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG42700--Hsp68\n  CG42700--Hsp70Ab\n  CG42700--Hsp70Ba\n  CG42700--Hsp70Bb\n  CG42700--Snr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp68--Hsp70Aa\n  Hsp70Aa--Hsp70Ba\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG42700, Hsp68, Hsp70Aa, Hsp70Ab, Hsp70Ba, Hsp70Bb, Hsp70Bbb, Hsp70Bc, Snr1\n\nTWO-HYBRID INTERACTIONS:\n  CG42700--Hsp68\n  CG42700--Hsp70Aa\n  CG42700--Hsp70Ab\n  CG42700--Hsp70Ba\n  CG42700--Hsp70Bb\n  CG42700--Hsp70Bbb\n  CG42700--Hsp70Bc\n  CG42700--Snr1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Hsp68--Hsp70Aa\n  Hsp70Aa--Hsp70Ba\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10559, CG18624, CG5114, Cpr92F, Hsc70-4, mam, trol\n\nTWO-HYBRID INTERACTIONS:\n  CG10559--CG18624\n  CG18624--CG5114\n  CG18624--Cpr92F\n  CG18624--Hsc70-4\n  CG18624--mam\n  CG18624--trol\n\nNETWORK SUMMARY: 7 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10565, CG7182, CG7191, Pak, Tep4, Uba2, mad2, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10565--CG7182\n  CG7182--CG7191\n  CG7182--Pak\n  CG7182--Tep4\n  CG7182--Uba2\n  CG7182--mad2\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Pak--Pak\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG7182--rti\n  rti--rti\n\nNETWORK SUMMARY: 8 proteins, 9 interactions\n\nNew protein to integrate: tomb\n\nPredict the interactions for tomb:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG7182--tomb"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG11269, CG13272, Cp38, spi\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG13272, spi\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11269, CG13272, Cp38, spi\n\nTWO-HYBRID INTERACTIONS:\n  CG11269--CG13272\n  CG13272--Cp38\n  CG13272--spi\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11762, CG15042, Gp150, Nup98-96, spo, spok"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11762, CG15042, Gp150, Nup98-96, spo, spok\n\nTWO-HYBRID INTERACTIONS:\n  CG15042--spo\n  Gp150--spo\n  Nup98-96--spo\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  CG11762--spo\n  spo--spok\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo\n\nTWO-HYBRID INTERACTIONS:\n  GATAe--GstE3\n  GstE3--tamo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2025--GstE3\n  GstE3--GstT1\n  GstE3--RhoGDI\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG2025, GATAe, GstE3, GstT1, RhoGDI, tamo\n\nTWO-HYBRID INTERACTIONS:\n  GATAe--GstE3\n  GstE3--tamo\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG2025--GstE3\n  GstE3--GstT1\n  GstE3--RhoGDI\n  GstT1--RhoGDI\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  tamo--tamo\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b\n\nTWO-HYBRID INTERACTIONS:\n  CG2091--RpII18\n  Hsp22--RpII18\n  RpII18--Taf10b\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n\nNETWORK SUMMARY: 6 proteins, 5 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10164, CG2091, CG8117, Hsp22, RpII18, Taf10b\n\nTWO-HYBRID INTERACTIONS:\n  CG10164--RpII18\n  CG2091--RpII18\n  Hsp22--RpII18\n  RpII18--Taf10b\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Hsp22--Hsp22\n\nCO-FRACTIONATION INTERACTIONS:\n  Hsp22--Hsp22\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG8117--RpII18\n\nNETWORK SUMMARY: 6 proteins, 7 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG10336, Rcd-1r, TER94\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  TER94--TER94\n\nTWO-HYBRID INTERACTIONS:\n  CG10336--Rcd-1r\n  CG10336--TER94\n\nNETWORK SUMMARY: 3 proteins, 3 interactions\n\nNew protein to integrate: CG7191\n\nPredict the interactions for CG7191:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG10336--CG7191"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: AGO1, CG14044, CG8145, Den1, Nedd8, rpr\n\nTWO-HYBRID INTERACTIONS:\n  AGO1--Den1\n  CG14044--Den1\n  CG8145--Den1\n  CG8145--Den1\n  Den1--Nedd8\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  Den1--Nedd8\n  rpr--rpr\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--Nedd8\n  Den1--rpr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Den1--Nedd8\n  rpr--rpr\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  Den1--Nedd8\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  AGO1--rpr\n\nNETWORK SUMMARY: 6 proteins, 13 interactions\n\nNew protein to integrate: W\n\nPredict the interactions for W:"
-      },
-      {
-        "role": "assistant",
-        "content": "PHENOTYPIC SUPPRESSION INTERACTIONS:\n  Den1--W\n  W--rpr\n  W--rpr\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  W--rpr\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  W--W\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  W--rpr\n  W--rpr\n\nCO-LOCALIZATION INTERACTIONS:\n  W--rpr"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG32687, CG7519, CG8003, Corp\n- Network density: approximately 0.50\n- Hub proteins (highly connected): CG8003, Corp\n- Total interactions: approximately 3"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG32687, CG7519, CG8003, Corp\n\nTWO-HYBRID INTERACTIONS:\n  CG32687--CG8003\n  CG7519--CG8003\n  CG8003--Corp\n\nNETWORK SUMMARY: 4 proteins, 3 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG1129, CG6576, CG8207, CycK, step"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG1129, CG6576, CG8207, CycK, step\n\nTWO-HYBRID INTERACTIONS:\n  CG1129--CG8207\n  CG1129--CG8207\n  CG6576--CG8207\n  CG8207--CycK\n  CG8207--step\n\nFAR WESTERN INTERACTIONS:\n  step--step\n\nNETWORK SUMMARY: 5 proteins, 6 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc\n- Network density: approximately 0.71\n- Hub proteins (highly connected): hep, puc\n- Total interactions: approximately 32"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Axud1, CG4853, Dcr-2, Pp1alpha-96A, Prpk, Spt5, bsk, cdc2, hep, puc\n\nTWO-HYBRID INTERACTIONS:\n  Axud1--CG4853\n  Axud1--Pp1alpha-96A\n  Axud1--Prpk\n  Axud1--Spt5\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  Axud1--Dcr-2\n  Axud1--puc\n  hep--puc\n  hep--puc\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  Axud1--bsk\n  Axud1--cdc2\n  Axud1--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--hep\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  bsk--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n  hep--puc\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Dcr-2--Dcr-2\n  bsk--hep\n\nNETWORK SUMMARY: 10 proteins, 32 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm\n- Network density: approximately 0.86\n- Hub proteins (highly connected): smo, swm\n- Total interactions: approximately 24"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FucTA, Pabp2, ZC3H3, cnk, hh, rux, smo, swm\n\nTWO-HYBRID INTERACTIONS:\n  Pabp2--Pabp2\n  Pabp2--swm\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  rux--swm\n  rux--swm\n  smo--swm\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  cnk--swm\n  hh--smo\n  hh--smo\n  hh--swm\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n  hh--hh\n  smo--smo\n  smo--smo\n  smo--smo\n\nFRET INTERACTIONS:\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n  smo--smo\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  FucTA--swm\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Pabp2--ZC3H3\n  ZC3H3--swm\n\nCO-FRACTIONATION INTERACTIONS:\n  hh--hh\n\nNETWORK SUMMARY: 8 proteins, 24 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21\n- Network density: approximately 1.84\n- Hub proteins (highly connected): TRIM21, GIT1\n- Total interactions: approximately 83"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: ERC2, FMR1, FXR1, GFI1B, GIT1, GRIP2, KRAS, PPFIA1, RNF8, TRIM21\n\nTWO-HYBRID INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FMR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--GRIP2\n  FXR1--FXR1\n  FXR1--GRIP2\n  GFI1B--GRIP2\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ERC2--PPFIA1\n  FMR1--FXR1\n  GIT1--GIT1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  PPFIA1--PPFIA1\n  PPFIA1--PPFIA1\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  ERC2--GIT1\n  ERC2--GRIP2\n  ERC2--PPFIA1\n  ERC2--PPFIA1\n  FMR1--FMR1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GIT1\n  GIT1--GRIP2\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GIT1--PPFIA1\n  GRIP2--PPFIA1\n  GRIP2--PPFIA1\n  TRIM21--TRIM21\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  RNF8--RNF8\n  RNF8--RNF8\n  RNF8--RNF8\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nCO-FRACTIONATION INTERACTIONS:\n  GIT1--GIT1\n\nCO-PURIFICATION INTERACTIONS:\n  FMR1--FXR1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--TRIM21\n  KRAS--KRAS\n  KRAS--KRAS\n  RNF8--TRIM21\n  TRIM21--TRIM21\n  TRIM21--TRIM21\n\nSYNTHETIC LETHALITY INTERACTIONS:\n  FMR1--KRAS\n  GRIP2--KRAS\n  KRAS--KRAS\n\nPOSITIVE GENETIC INTERACTIONS:\n  GFI1B--GFI1B\n\nFRET INTERACTIONS:\n  KRAS--KRAS\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  FMR1--FXR1\n  FMR1--FXR1\n  GRIP2--RNF8\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--KRAS\n  KRAS--PPFIA1\n  KRAS--PPFIA1\n\nNEGATIVE GENETIC INTERACTIONS:\n  KRAS--KRAS\n\nPCA INTERACTIONS:\n  KRAS--KRAS\n\nNETWORK SUMMARY: 10 proteins, 83 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: DAPK1, DDX39A, FANCC, MAGED1, NTN1, UNC5A\n\nTWO-HYBRID INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--DDX39A\n  FANCC--FANCC\n  FANCC--UNC5A\n  MAGED1--MAGED1\n  MAGED1--MAGED1\n  MAGED1--UNC5A\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  MAGED1--UNC5A\n  NTN1--UNC5A\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--UNC5A\n  FANCC--UNC5A\n  FANCC--UNC5A\n  MAGED1--UNC5A\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n  DAPK1--DAPK1\n\nAFFINITY CAPTURE-RNA INTERACTIONS:\n  DDX39A--DDX39A\n  DDX39A--UNC5A\n\nCROSS-LINKING-MS (XL-MS) INTERACTIONS:\n  DDX39A--DDX39A\n\nNETWORK SUMMARY: 6 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CCAP-R, CG10301, CG1314, CG15576, CG15631, CG6770, CG9222, RpS28b, dx\n\nTWO-HYBRID INTERACTIONS:\n  CCAP-R--CG1314\n  CG10301--CG1314\n  CG1314--CG15576\n  CG1314--CG15631\n  CG1314--CG6770\n  CG1314--CG9222\n  CG1314--RpS28b\n  CG1314--dx\n  dx--dx\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  dx--dx\n\nNETWORK SUMMARY: 9 proteins, 10 interactions\n\nNew protein to integrate: Hakai\n\nPredict the interactions for Hakai:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  CG1314--Hakai"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG14232, CG18259, CG9356, Mf, Rab2, Tom20, oc, srpk79D, zuc\n\nTWO-HYBRID INTERACTIONS:\n  CG14232--CG9356\n  CG14232--CG9356\n  CG18259--CG18259\n  CG18259--CG9356\n  CG9356--Mf\n  CG9356--oc\n  CG9356--srpk79D\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG14232--CG9356\n  CG9356--Rab2\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  zuc--zuc\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  zuc--zuc\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  srpk79D--srpk79D\n\nPROXIMITY LABEL-MS INTERACTIONS:\n  CG18259--Tom20\n  CG18259--zuc\n  CG9356--Tom20\n  CG9356--zuc\n  Tom20--Tom20\n  Tom20--zuc\n  Tom20--zuc\n  zuc--zuc\n\nNETWORK SUMMARY: 9 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk\n- Network density: approximately 1.20\n- Hub proteins (highly connected): ttk, kat80\n- Total interactions: approximately 18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Cyp9f2--kat80\n  Kat60--Kat60\n  Kat60--kat80\n  NimC1--kat80\n  NimC1--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  kat80--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Kat60--kat80\n  Kat60--kat80\n  Patronin--kat80\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw\n- Network density: approximately 0.36\n- Hub proteins (highly connected): dar1, hale\n- Total interactions: approximately 16"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10754, CG18522, CG31955, CG5674, Mst87F, dar1, hale, kn, nudE, sw\n\nTWO-HYBRID INTERACTIONS:\n  CG10754--dar1\n  CG18522--dar1\n  CG18522--hale\n  CG31955--dar1\n  CG5674--dar1\n  CG5674--hale\n  Mst87F--dar1\n  Mst87F--hale\n  dar1--hale\n  hale--hale\n\nPHENOTYPIC SUPPRESSION INTERACTIONS:\n  dar1--kn\n  dar1--nudE\n  dar1--sw\n\nCO-FRACTIONATION INTERACTIONS:\n  kn--kn\n  nudE--sw\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  nudE--sw\n\nNETWORK SUMMARY: 10 proteins, 16 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG1142, CG14490, CG3303, CG42797, CG8079\n\nTWO-HYBRID INTERACTIONS:\n  CG1142--CG14490\n  CG1142--CG3303\n  CG1142--CG42797\n  CG1142--CG8079\n\nNETWORK SUMMARY: 5 proteins, 4 interactions\n\nNew protein to integrate: FK506-bp1\n\nPredict the interactions for FK506-bp1:"
-      },
-      {
-        "role": "assistant",
-        "content": "CO-CRYSTAL STRUCTURE INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG1142--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nCO-FRACTIONATION INTERACTIONS:\n  FK506-bp1--FK506-bp1\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  FK506-bp1--FK506-bp1\n  FK506-bp1--FK506-bp1\n\nTWO-HYBRID INTERACTIONS:\n  FK506-bp1--FK506-bp1"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: Fibp, GstD1, GstD10, GstD2, GstD4, GstD5, GstD6, GstD7, GstD9\n\nTWO-HYBRID INTERACTIONS:\n  Fibp--GstD4\n  GstD1--GstD1\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD7\n  GstD10--GstD2\n  GstD10--GstD7\n  GstD4--GstD6\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--GstD10\n  GstD1--GstD2\n  GstD1--GstD4\n  GstD1--GstD5\n  GstD1--GstD7\n  GstD1--GstD9\n  GstD10--GstD2\n  GstD10--GstD4\n  GstD10--GstD9\n  GstD2--GstD4\n  GstD2--GstD5\n  GstD2--GstD7\n  GstD2--GstD9\n  GstD4--GstD5\n  GstD4--GstD7\n  GstD4--GstD9\n  GstD5--GstD7\n  GstD5--GstD9\n  GstD7--GstD9\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  GstD2--GstD2\n\nCO-CRYSTAL STRUCTURE INTERACTIONS:\n  GstD2--GstD2\n\nNETWORK SUMMARY: 9 proteins, 29 interactions\n\nNew protein to integrate: rti\n\nPredict the interactions for rti:"
-      },
-      {
-        "role": "assistant",
-        "content": "AFFINITY CAPTURE-MS INTERACTIONS:\n  GstD1--rti\n  GstD4--rti\n  GstD9--rti\n  rti--rti"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: CG11560, CG4229, CG7967, RpS7, krz"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG11560, CG4229, CG7967, RpS7, krz\n\nTWO-HYBRID INTERACTIONS:\n  CG11560--CG11560\n  CG11560--CG4229\n  CG11560--CG7967\n  CG11560--RpS7\n  CG11560--krz\n\nNETWORK SUMMARY: 5 proteins, 5 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr\n- Network density: approximately 0.44\n- Hub proteins (highly connected): Sans, CG42593\n- Total interactions: approximately 20"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG12498, CG14074, CG42593, CG43773, Cul1, LIMK1, Sans, ck, l(2)k09913, lwr\n\nTWO-HYBRID INTERACTIONS:\n  CG12498--Sans\n  CG14074--CG14074\n  CG14074--Sans\n  CG14074--lwr\n  CG43773--Sans\n  LIMK1--Sans\n  Sans--l(2)k09913\n  Sans--lwr\n  lwr--lwr\n  lwr--lwr\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG42593--CG42593\n  CG42593--Sans\n  Cul1--Cul1\n  Cul1--Sans\n  LIMK1--LIMK1\n  Sans--ck\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  LIMK1--LIMK1\n\nBIOCHEMICAL ACTIVITY INTERACTIONS:\n  CG42593--CG42593\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  CG42593--Sans\n  CG42593--ck\n\nNETWORK SUMMARY: 10 proteins, 20 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a list of proteins, predict all likely interactions between them based on biological knowledge."
-      },
-      {
-        "role": "user",
-        "content": "Predict the protein interaction network for these proteins: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Bet3, CG9577, Met75Ca, Met75Cb, SIDL, Trs20, Trs31, gry\n\nTWO-HYBRID INTERACTIONS:\n  Bet3--Trs20\n  Bet3--Trs31\n  CG9577--CG9577\n  CG9577--Trs31\n  Met75Ca--Trs31\n  Met75Cb--Trs31\n  Trs20--Trs31\n  Trs20--Trs31\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  Bet3--SIDL\n  Bet3--SIDL\n  Bet3--gry\n  Bet3--gry\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Bet3--SIDL\n  Bet3--gry\n  SIDL--Trs20\n  SIDL--Trs31\n  Trs20--gry\n  Trs31--gry\n\nNETWORK SUMMARY: 8 proteins, 21 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction network generator. Given network constraints and properties, generate a biologically plausible protein network."
-      },
-      {
-        "role": "user",
-        "content": "Generate a protein network with the following properties:\n- Proteins: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n- Network density: approximately 0.40\n- Hub proteins (highly connected): THEG, MDFI\n- Total interactions: approximately 18"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: FHL3, LEPREL2, MDFI, MID1IP1, MTA2, PPP2R2D, PRICKLE3, RPGRIP1L, THEG, TTL\n\nTWO-HYBRID INTERACTIONS:\n  FHL3--FHL3\n  FHL3--THEG\n  FHL3--THEG\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--MDFI\n  MDFI--THEG\n  MDFI--THEG\n  TTL--TTL\n  TTL--TTL\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  LEPREL2--THEG\n  MID1IP1--THEG\n  MTA2--MTA2\n  MTA2--THEG\n  PPP2R2D--THEG\n  PRICKLE3--THEG\n  RPGRIP1L--THEG\n  THEG--TTL\n\nNETWORK SUMMARY: 10 proteins, 18 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5\n\nTWO-HYBRID INTERACTIONS:\n  CG12496--CG5280\n  CG12496--CG7352\n  CG13032--CG5280\n  CG15646--CG5280\n  CG5062--CG5280\n  CG5280--CG7352\n  CG5280--Evi5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10466, CG12496, CG13032, CG15646, CG18619, CG5062, CG5280, CG7352, CG8301, Evi5\n\nTWO-HYBRID INTERACTIONS:\n  CG10466--CG5280\n  CG12496--CG5280\n  CG12496--CG7352\n  CG13032--CG5280\n  CG15646--CG5280\n  CG18619--CG5280\n  CG5062--CG5280\n  CG5280--CG7352\n  CG5280--CG8301\n  CG5280--Evi5\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  CG18619--CG18619\n\nNETWORK SUMMARY: 10 proteins, 11 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG10252--CG44251\n  CG10252--D1\n  CG10252--Zyx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10252--CG7770\n  CG10252--mgr\n  CG7770--mgr\n  rti--rti\n\nNETWORK SUMMARY: 10 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10252, CG1486, CG3792, CG44251, CG7770, CG8292, D1, Zyx, mgr, rti\n\nTWO-HYBRID INTERACTIONS:\n  CG10252--CG1486\n  CG10252--CG3792\n  CG10252--CG44251\n  CG10252--D1\n  CG10252--Zyx\n\nAFFINITY CAPTURE-MS INTERACTIONS:\n  CG10252--CG7770\n  CG10252--CG8292\n  CG10252--mgr\n  CG10252--rti\n  CG7770--mgr\n  rti--rti\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  mgr--mgr\n\nNETWORK SUMMARY: 10 proteins, 12 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a known protein network and a new protein, predict which proteins in the network the new protein will interact with."
-      },
-      {
-        "role": "user",
-        "content": "Known protein network:\nPROTEINS: CG13083, CG34168, Oda, RhoGAP92B, Traf-like, sowah\n\nTWO-HYBRID INTERACTIONS:\n  CG13083--sowah\n  CG34168--sowah\n  Oda--sowah\n  RhoGAP92B--sowah\n  Traf-like--sowah\n  Traf-like--sowah\n\nNETWORK SUMMARY: 6 proteins, 6 interactions\n\nNew protein to integrate: par-6\n\nPredict the interactions for par-6:"
-      },
-      {
-        "role": "assistant",
-        "content": "TWO-HYBRID INTERACTIONS:\n  par-6--sowah"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG14354--CG15638\n  CG14354--CG6520\n  CG14354--CG9986\n  CG14354--Lcp2\n  CG14354--Sgt\n  CG9986--Sgt\n\nNETWORK SUMMARY: 9 proteins, 7 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: CG10053, CG13962, CG14354, CG15638, CG4229, CG6520, CG9986, Lcp2, Sgt\n\nTWO-HYBRID INTERACTIONS:\n  CG10053--CG14354\n  CG13962--CG14354\n  CG14354--CG15638\n  CG14354--CG4229\n  CG14354--CG6520\n  CG14354--CG9986\n  CG14354--Lcp2\n  CG14354--Sgt\n  CG9986--Sgt\n  Sgt--Sgt\n\nNETWORK SUMMARY: 9 proteins, 10 interactions"
-      }
-    ]
-  },
-  {
-    "updated": [
-      {
-        "role": "system",
-        "content": "You are a protein interaction prediction system. Given a partial protein network, predict the complete network including missing interactions."
-      },
-      {
-        "role": "user",
-        "content": "Complete this partial protein network:\nPROTEINS: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Cyp9f2--kat80\n  Kat60--Kat60\n  Kat60--kat80\n  NimC1--kat80\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  kat80--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Kat60--kat80\n  Kat60--kat80\n  ttk--ttk\n\nNETWORK SUMMARY: 6 proteins, 8 interactions"
-      },
-      {
-        "role": "assistant",
-        "content": "PROTEINS: Cyp9f2, Kat60, NimC1, Patronin, kat80, ttk\n\nTWO-HYBRID INTERACTIONS:\n  Cyp9f2--kat80\n  Kat60--Kat60\n  Kat60--kat80\n  NimC1--kat80\n  NimC1--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n  ttk--ttk\n\nPHENOTYPIC ENHANCEMENT INTERACTIONS:\n  kat80--ttk\n\nAFFINITY CAPTURE-WESTERN INTERACTIONS:\n  Kat60--kat80\n  Kat60--kat80\n  Patronin--kat80\n  ttk--ttk\n\nCO-FRACTIONATION INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nRECONSTITUTED COMPLEX INTERACTIONS:\n  ttk--ttk\n  ttk--ttk\n\nNETWORK SUMMARY: 6 proteins, 18 interactions"
-      }
-    ]
-  }
-]
\ No newline at end of file
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