run:
  name: ppi_benchmark
  output_dir: results/ppi_benchmark
  random_seed: 20260415
  batch_size: 8

benchmark:
  benchmark_type: peptide_like

target:
  protein_name: MDM2
  target_id: mdm2_ppi_benchmark
  docking_target_path: data/targets/ppi_benchmark/mdm2_1ycr.pdb

reference:
  reference_pdb_id: "1YCR"
  receptor_chain_id: "A"
  peptide_chain_id: "B"
  n_variants: 50
  min_length: 8
  max_length: 20

disk_guard:
  min_free_gb: 8.0
  force_cleanup: true