from __future__ import annotations from dataclasses import dataclass from typing import Iterable, List import numpy as np import pandas as pd from libs.adaptive.policies import PrioritizationPolicy def clamp_time_importance(value: float) -> float: return float(max(0.0, min(1.0, float(value)))) @dataclass(frozen=True) class TimeImportanceControls: utility_weight: float uncertainty_weight: float diversity_weight: float cluster_bonus_weight: float threshold_stop_shift: float exploration_additive: float def controls_from_time_importance( base_policy: PrioritizationPolicy, *, exploration_boost: float, time_importance: float, ) -> TimeImportanceControls: ti = clamp_time_importance(time_importance) exp = float(max(0.0, exploration_boost)) adjusted_exp = float(max(0.0, exp + (1.0 - ti) * 0.22)) utility = max(0.15, float(base_policy.utility_weight) - 0.40 * adjusted_exp + 0.22 * ti) uncertainty = max(0.05, float(base_policy.uncertainty_weight) + 0.22 * adjusted_exp - 0.10 * ti) diversity = max(0.05, float(base_policy.diversity_weight) + 0.14 * adjusted_exp - 0.08 * ti) cluster_bonus = float(base_policy.cluster_bonus_weight) + 0.04 * adjusted_exp # Negative means easier stopping (more time-sensitive). threshold_stop_shift = float(-0.20 * ti) return TimeImportanceControls( utility_weight=float(utility), uncertainty_weight=float(uncertainty), diversity_weight=float(diversity), cluster_bonus_weight=float(cluster_bonus), threshold_stop_shift=threshold_stop_shift, exploration_additive=adjusted_exp, ) def required_budget_metric_columns() -> List[str]: return [ "dataset", "strategy", "strategy_group", "budget", "time_importance", "top10_recovery_fraction", "top50_recovery_fraction", "top100_recovery_fraction", "best_docking_score", "best_final_score", "dockings_performed", "wall_time_seconds", "quality_per_time", "quality_per_docking", "auc_best_score_so_far", ] def validate_budget_metric_schema(df: pd.DataFrame) -> List[str]: missing = [c for c in required_budget_metric_columns() if c not in df.columns] return missing def select_best_policy_budget(metrics_df: pd.DataFrame) -> pd.Series: if metrics_df.empty: raise ValueError("metrics_df is empty") missing = validate_budget_metric_schema(metrics_df) if missing: raise ValueError(f"metrics_df missing required columns: {missing}") d = metrics_df.copy() if "strategy_group" in d.columns: d = d[d["strategy_group"].astype(str) == "adaptive"].copy() if d.empty: raise ValueError("No adaptive rows found for selection") for c in ["top10_recovery_fraction", "top50_recovery_fraction", "top100_recovery_fraction", "quality_per_time", "quality_per_docking"]: d[f"rank_{c}"] = pd.to_numeric(d[c], errors="coerce").rank(method="average", ascending=False) d["rank_budget"] = pd.to_numeric(d["budget"], errors="coerce").rank(method="average", ascending=True) d["rank_best_final"] = pd.to_numeric(d["best_final_score"], errors="coerce").rank(method="average", ascending=True) d["selection_score"] = ( 0.24 * d["rank_top50_recovery_fraction"] + 0.24 * d["rank_top100_recovery_fraction"] + 0.20 * d["rank_top10_recovery_fraction"] + 0.12 * d["rank_quality_per_docking"] + 0.10 * d["rank_quality_per_time"] + 0.06 * d["rank_best_final"] + 0.04 * d["rank_budget"] ) chosen = d.sort_values(["selection_score", "budget"], ascending=[True, True]).iloc[0] return chosen def summarize_diversity(df: pd.DataFrame, *, similarity_col: str = "reference_similarity", scaffold_col: str = "scaffold_core") -> pd.DataFrame: vals = pd.to_numeric(df.get(similarity_col, pd.Series(dtype=float)), errors="coerce").dropna() bins = np.linspace(0.0, 1.0, 11) hist, edges = np.histogram(vals.to_numpy(dtype=float), bins=bins) out = pd.DataFrame( { "bin_left": edges[:-1], "bin_right": edges[1:], "count": hist, "fraction": hist / max(1, int(hist.sum())), } ) out["unique_scaffold_count"] = int(df.get(scaffold_col, pd.Series(dtype=str)).astype(str).replace({"": np.nan}).dropna().nunique()) out["total_ligands"] = int(df.shape[0]) return out