#!/usr/bin/env bash set -euo pipefail # Server-side convenience wrapper for the independent multi-strategy benchmark. # Override any default through environment variables before running. # # Required: # DATASET_DIR # STRATEGY_OUT # # Optional examples: # export JOBS=120 # export COST_BUDGET_RUNS=100000 # export CALIBRATION_SIZE=50000 # export STRATEGIES=cluster_only_triage,cheap_descriptor_filter_only,random_cost_balanced,diverse_random_cost_balanced,single_fidelity_cost_balanced,reference_free_active_learning_v2 # bash scripts/run_strategy_benchmark_server.sh if [[ -z "${DATASET_DIR:-}" ]]; then echo "ERROR: DATASET_DIR is required" >&2 exit 2 fi if [[ -z "${STRATEGY_OUT:-}" ]]; then echo "ERROR: STRATEGY_OUT is required" >&2 exit 2 fi REFERENCE_MODE="${REFERENCE_MODE:-sampled}" REFERENCE_SAMPLE_SIZE="${REFERENCE_SAMPLE_SIZE:-500}" REFERENCE_SAMPLE_SEED="${REFERENCE_SAMPLE_SEED:-42}" STRATEGIES="${STRATEGIES:-cluster_only_triage,cheap_descriptor_filter_only,random_cost_balanced,diverse_random_cost_balanced,single_fidelity_cost_balanced,reference_free_active_learning_v2}" ADAPTIVE_POLICY="${ADAPTIVE_POLICY:-cluster_bandit}" TRIAGE_TARGET_RECALL="${TRIAGE_TARGET_RECALL:-0.95}" TRIAGE_RETAIN_FRACTION="${TRIAGE_RETAIN_FRACTION:-0.05}" CALIBRATION_SIZE="${CALIBRATION_SIZE:-50000}" FIDELITY_VALIDATION_SIZE="${FIDELITY_VALIDATION_SIZE:-50}" COST_BUDGET_RUNS="${COST_BUDGET_RUNS:-100000}" FIDELITY_LEVELS="${FIDELITY_LEVELS:-5,10,15,30,50}" SEEDS="${SEEDS:-1,2,3}" JOBS="${JOBS:-120}" CHUNK_SIZE="${CHUNK_SIZE:-30}" CPU_FRACTION="${CPU_FRACTION:-0.85}" RDOCK_TIMEOUT_SECONDS="${RDOCK_TIMEOUT_SECONDS:-4000}" EXTRA_ARGS="${EXTRA_ARGS:-}" set -x python -m docking_pipeline benchmark-triage-strategies \ --dataset-dir "${DATASET_DIR}" \ --reference-mode "${REFERENCE_MODE}" \ --reference-sample-size "${REFERENCE_SAMPLE_SIZE}" \ --reference-sample-seed "${REFERENCE_SAMPLE_SEED}" \ --strategies "${STRATEGIES}" \ --adaptive-policy "${ADAPTIVE_POLICY}" \ --triage-target-recall "${TRIAGE_TARGET_RECALL}" \ --triage-retain-fraction "${TRIAGE_RETAIN_FRACTION}" \ --calibration-size "${CALIBRATION_SIZE}" \ --fidelity-validation-size "${FIDELITY_VALIDATION_SIZE}" \ --cost-budget-runs "${COST_BUDGET_RUNS}" \ --fidelity-levels "${FIDELITY_LEVELS}" \ --seeds "${SEEDS}" \ --jobs "${JOBS}" \ --chunk-size "${CHUNK_SIZE}" \ --cpu-fraction "${CPU_FRACTION}" \ --rdock-timeout-seconds "${RDOCK_TIMEOUT_SECONDS}" \ --out "${STRATEGY_OUT}" \ --resume \ ${EXTRA_ARGS}