| model,model_file,feature_cols,n_genomes_total,n_annotated,n_missing_truth,elapsed_sec,elapsed_min,overall_n,overall_positives,overall_tn,overall_fp,overall_fn,overall_tp,overall_accuracy,overall_precision,overall_recall,overall_f1,overall_specificity,overall_fn_rate,overall_fp_rate,overall_roc_auc,overall_pr_auc,isolate_n,isolate_positives,isolate_tn,isolate_fp,isolate_fn,isolate_tp,isolate_accuracy,isolate_precision,isolate_recall,isolate_f1,isolate_specificity,isolate_fn_rate,isolate_fp_rate,isolate_roc_auc,isolate_pr_auc,mag_n,mag_positives,mag_tn,mag_fp,mag_fn,mag_tp,mag_accuracy,mag_precision,mag_recall,mag_f1,mag_specificity,mag_fn_rate,mag_fp_rate,mag_roc_auc,mag_pr_auc |
| model_ET_pu_normal_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_normal_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,50.55208730697632,0.8425347884496053,4728,71,4596,61,36,35,0.9794839255499154,0.3645833333333333,0.49295774647887325,0.41916167664670656,0.9869014386944385,0.5070422535211268,0.01309856130556152,0.9452921091072957,0.39827940648466603,904,9,880,15,5,4,0.9778761061946902,0.21052631578947367,0.4444444444444444,0.2857142857142857,0.9832402234636871,0.5555555555555556,0.01675977653631285,0.91495965238982,0.3824080976567331,3824,62,3716,46,31,31,0.9798640167364017,0.4025974025974026,0.5,0.4460431654676259,0.987772461456672,0.5,0.012227538543328018,0.9500908919414862,0.43006088211550036 |
| model_ET_pu_normal_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_normal_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,77.69140934944153,1.2948568224906922,4728,71,4571,86,34,37,0.9746192893401016,0.3008130081300813,0.5211267605633803,0.38144329896907214,0.9815331758642903,0.4788732394366197,0.018466824135709683,0.9428968053543507,0.37988079349086107,904,9,876,19,5,4,0.9734513274336283,0.17391304347826086,0.4444444444444444,0.25,0.9787709497206704,0.5555555555555556,0.021229050279329607,0.9160769708255743,0.41276268011543327,3824,62,3695,67,29,33,0.9748953974895398,0.33,0.532258064516129,0.4074074074074074,0.9821903242955875,0.46774193548387094,0.017809675704412546,0.9466695820685633,0.3918992950735184 |
| model_ET_pu_normal_PR_AUC_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_normal_PR_AUC_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,120.88866925239563,2.0148111542065936,4728,71,4571,86,35,36,0.9744077834179357,0.29508196721311475,0.5070422535211268,0.37305699481865284,0.9815331758642903,0.49295774647887325,0.018466824135709683,0.9432688032856793,0.35632532830639385,904,9,879,16,5,4,0.9767699115044248,0.2,0.4444444444444444,0.27586206896551724,0.982122905027933,0.5555555555555556,0.017877094972067038,0.9217877094972068,0.38450041503321486,3824,62,3692,70,30,32,0.9738493723849372,0.3137254901960784,0.5161290322580645,0.3902439024390244,0.9813928761297183,0.4838709677419355,0.018607123870281767,0.9466095590883368,0.36977013156762745 |
| model_ET_pu_weighted_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_weighted_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,106.17404961585999,1.7695674935976664,4728,71,4641,16,54,17,0.9851945854483926,0.5151515151515151,0.23943661971830985,0.3269230769230769,0.9965643117887052,0.7605633802816901,0.003435688211294825,0.9455612783421595,0.3715650874601461,904,9,892,3,5,4,0.9911504424778761,0.5714285714285714,0.4444444444444444,0.5,0.9966480446927374,0.5555555555555556,0.0033519553072625698,0.9353196772191186,0.42842752986492355,3824,62,3749,13,49,13,0.983786610878661,0.5,0.20967741935483872,0.29545454545454547,0.9965443912812334,0.7903225806451613,0.0034556087187666137,0.9474155819656669,0.36356733351960374 |
| model_ET_pu_weighted_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_weighted_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,82.65518403053284,1.3775864005088807,4728,71,4580,77,35,36,0.9763113367174281,0.3185840707964602,0.5070422535211268,0.391304347826087,0.9834657504831437,0.49295774647887325,0.016534249516856347,0.9428544641263946,0.35436137678040497,904,9,880,15,5,4,0.9778761061946902,0.21052631578947367,0.4444444444444444,0.2857142857142857,0.9832402234636871,0.5555555555555556,0.01675977653631285,0.924643078833023,0.38470043564313927,3824,62,3700,62,30,32,0.9759414225941423,0.3404255319148936,0.5161290322580645,0.41025641025641024,0.9835194045720361,0.4838709677419355,0.01648059542796385,0.9460307660647219,0.3687535529399977 |
| model_ET_pu_weighted_PR_AUC_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_pu_weighted_PR_AUC_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,123.70275974273682,2.061712662378947,4728,71,4635,22,47,24,0.9854060913705583,0.5217391304347826,0.3380281690140845,0.41025641025641024,0.9952759287094696,0.6619718309859155,0.004724071290530384,0.9487005779577616,0.4259564813417571,904,9,890,5,5,4,0.9889380530973452,0.4444444444444444,0.4444444444444444,0.4444444444444444,0.994413407821229,0.5555555555555556,0.00558659217877095,0.9303538175046555,0.5056068757279014,3824,62,3745,17,42,20,0.984571129707113,0.5405405405405406,0.3225806451612903,0.40404040404040403,0.9954811270600744,0.6774193548387096,0.004518872939925572,0.9517801100992952,0.4147358376878987 |
| model_ET_supervised_normal_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_normal_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,63.84041881561279,1.0640069802602132,4728,71,4657,0,66,5,0.9860406091370558,1.0,0.07042253521126761,0.13157894736842105,1.0,0.9295774647887324,0.0,0.9553995650951015,0.44559891436675103,904,9,895,0,7,2,0.9922566371681416,1.0,0.2222222222222222,0.36363636363636365,1.0,0.7777777777777778,0.0,0.9279329608938547,0.5109520240817257,3824,62,3762,0,59,3,0.984571129707113,1.0,0.04838709677419355,0.09230769230769231,1.0,0.9516129032258065,0.0,0.9591607929893159,0.43312121548020954 |
| model_ET_supervised_normal_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_normal_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,26.79050636291504,0.4465084393819173,4728,71,4657,0,65,6,0.9862521150592216,1.0,0.08450704225352113,0.15584415584415584,1.0,0.9154929577464789,0.0,0.9546011305107864,0.4622851850458132,904,9,895,0,6,3,0.9933628318584071,1.0,0.3333333333333333,0.5,1.0,0.6666666666666666,0.0,0.9201738050900061,0.516873261585494,3824,62,3762,0,59,3,0.984571129707113,1.0,0.04838709677419355,0.09230769230769231,1.0,0.9516129032258065,0.0,0.9592015228687555,0.4515174716019063 |
| model_ET_supervised_normal_PR_AUC_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_normal_PR_AUC_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,45.076682806015015,0.7512780467669169,4728,71,4657,0,69,2,0.9854060913705583,1.0,0.028169014084507043,0.0547945205479452,1.0,0.971830985915493,0.0,0.9525657271954682,0.4356412526112598,904,9,895,0,8,1,0.9911504424778761,1.0,0.1111111111111111,0.2,1.0,0.8888888888888888,0.0,0.9317815021725636,0.5251450492609465,3824,62,3762,0,61,1,0.9840481171548117,1.0,0.016129032258064516,0.031746031746031744,1.0,0.9838709677419355,0.0,0.9553836325907633,0.41843805776851867 |
| model_ET_supervised_weighted_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_weighted_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,18.306095123291016,0.3051015853881836,4728,71,4657,0,65,6,0.9862521150592216,1.0,0.08450704225352113,0.15584415584415584,1.0,0.9154929577464789,0.0,0.9572277988307772,0.4579961401580452,904,9,895,0,6,3,0.9933628318584071,1.0,0.3333333333333333,0.5,1.0,0.6666666666666666,0.0,0.9270018621973929,0.5219244087813817,3824,62,3762,0,59,3,0.984571129707113,1.0,0.04838709677419355,0.09230769230769231,1.0,0.9516129032258065,0.0,0.96116298811545,0.44718476427977677 |
| model_ET_supervised_weighted_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_weighted_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,33.15771460533142,0.5526285767555237,4728,71,4654,3,58,13,0.987098138747885,0.8125,0.18309859154929578,0.2988505747126437,0.9993558084603822,0.8169014084507042,0.0006441915396177797,0.953108602225334,0.4648988205928246,904,9,893,2,6,3,0.9911504424778761,0.6,0.3333333333333333,0.42857142857142855,0.9977653631284916,0.6666666666666666,0.0022346368715083797,0.9025450031036624,0.4252996463057907,3824,62,3761,1,52,10,0.9861401673640168,0.9090909090909091,0.16129032258064516,0.273972602739726,0.9997341839447103,0.8387096774193549,0.0002658160552897395,0.9596645572876473,0.4868861186802772 |
| model_ET_supervised_weighted_PR_AUC_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_ET_supervised_weighted_PR_AUC_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,37.03258180618286,0.6172096967697144,4728,71,4657,0,65,6,0.9862521150592216,1.0,0.08450704225352113,0.15584415584415584,1.0,0.9154929577464789,0.0,0.9543697659437406,0.45731081328192,904,9,895,0,6,3,0.9933628318584071,1.0,0.3333333333333333,0.5,1.0,0.6666666666666666,0.0,0.9200496585971446,0.5170537927389657,3824,62,3762,0,59,3,0.984571129707113,1.0,0.04838709677419355,0.09230769230769231,1.0,0.9516129032258065,0.0,0.958867109121778,0.446047263192599 |
| model_RF_pu_normal_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_RF_pu_normal_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,42.984647035598755,0.7164107839266459,4728,71,4595,62,38,33,0.9788494077834179,0.3473684210526316,0.4647887323943662,0.39759036144578314,0.9866867081812326,0.5352112676056338,0.013313291818767448,0.944502747643257,0.41314388689946535,904,9,884,11,5,4,0.9823008849557522,0.26666666666666666,0.4444444444444444,0.3333333333333333,0.9877094972067039,0.5555555555555556,0.012290502793296089,0.9138423339540658,0.4470001697242661,3824,62,3711,51,33,29,0.9780334728033473,0.3625,0.46774193548387094,0.4084507042253521,0.9864433811802232,0.532258064516129,0.013556618819776715,0.9487832484436899,0.4191021823945725 |
| model_RF_pu_normal_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_RF_pu_normal_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,29.3424015045166,0.4890400250752767,4728,71,4596,61,38,33,0.9790609137055838,0.35106382978723405,0.4647887323943662,0.4,0.9869014386944385,0.5352112676056338,0.01309856130556152,0.9444422601747483,0.4089677391813839,904,9,885,10,5,4,0.9834070796460177,0.2857142857142857,0.4444444444444444,0.34782608695652173,0.9888268156424581,0.5555555555555556,0.0111731843575419,0.9144630664183737,0.44677775412233117,3824,62,3711,51,33,29,0.9780334728033473,0.3625,0.46774193548387094,0.4084507042253521,0.9864433811802232,0.532258064516129,0.013556618819776715,0.9485517312342439,0.4153182068657609 |
| model_RF_pu_normal_PR_AUC_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_RF_pu_normal_PR_AUC_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,52.97184228897095,0.8828640381495158,4728,71,4631,26,50,21,0.9839255499153976,0.44680851063829785,0.29577464788732394,0.3559322033898305,0.9944170066566459,0.704225352112676,0.0055829933433540905,0.9439765066672312,0.36971768238282215,904,9,891,4,5,4,0.9900442477876106,0.5,0.4444444444444444,0.47058823529411764,0.9955307262569832,0.5555555555555556,0.004469273743016759,0.933457479826195,0.43976839784190314,3824,62,3740,22,45,17,0.9824790794979079,0.4358974358974359,0.27419354838709675,0.33663366336633666,0.9941520467836257,0.7258064516129032,0.005847953216374269,0.9456148925588654,0.3590319158994692 |
| model_RF_pu_weighted_F1_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_RF_pu_weighted_F1_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,56.54481363296509,0.9424135605494182,4728,71,4632,25,49,22,0.9843485617597293,0.46808510638297873,0.30985915492957744,0.3728813559322034,0.9946317371698519,0.6901408450704225,0.005368262830148164,0.9436710449512622,0.3725512281474701,904,9,891,4,5,4,0.9900442477876106,0.5,0.4444444444444444,0.47058823529411764,0.9955307262569832,0.5555555555555556,0.004469273743016759,0.9330850403476102,0.42972094634184643,3824,62,3741,21,44,18,0.9830020920502092,0.46153846153846156,0.2903225806451613,0.3564356435643564,0.9944178628389154,0.7096774193548387,0.005582137161084529,0.9456234672703263,0.36556161220560734 |
| model_RF_pu_weighted_FB_64log_gc_tetra,/TomaszLab/tRNA/Modele_final/results_models/model_RF_pu_weighted_FB_64log_gc_tetra.joblib,/TomaszLab/tRNA/Modele_final/results_models/feature_columns_64log_gc_tetra.json,4744,4728,16,28.662107467651367,0.4777017911275228,4728,71,4591,66,37,34,0.9782148900169205,0.34,0.4788732394366197,0.39766081871345027,0.9858277861284088,0.5211267605633803,0.014172213871591153,0.9458485938175759,0.3909344311525199,904,9,885,10,5,4,0.9834070796460177,0.2857142857142857,0.4444444444444444,0.34782608695652173,0.9888268156424581,0.5555555555555556,0.0111731843575419,0.9251396648044693,0.45292861132542767,3824,62,3706,56,32,30,0.9769874476987448,0.3488372093023256,0.4838709677419355,0.40540540540540543,0.9851143009037746,0.5161290322580645,0.014885699096225412,0.9487918231551509,0.3868216640580115 |
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