Add processed OCTID dataset with 5 experimental splits
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- README.md +116 -0
- images/AMD/AMRD1.jpeg +3 -0
- images/AMD/AMRD10.jpeg +3 -0
- images/AMD/AMRD11.jpeg +3 -0
- images/AMD/AMRD12.jpeg +3 -0
- images/AMD/AMRD13.jpeg +3 -0
- images/AMD/AMRD14.jpeg +3 -0
- images/AMD/AMRD15.jpeg +3 -0
- images/AMD/AMRD16.jpeg +3 -0
- images/AMD/AMRD17.jpeg +3 -0
- images/AMD/AMRD18.jpeg +3 -0
- images/AMD/AMRD19.jpeg +3 -0
- images/AMD/AMRD2.jpeg +3 -0
- images/AMD/AMRD20.jpeg +3 -0
- images/AMD/AMRD21.jpeg +3 -0
- images/AMD/AMRD22.jpeg +3 -0
- images/AMD/AMRD23.jpeg +3 -0
- images/AMD/AMRD24.jpeg +3 -0
- images/AMD/AMRD25.jpeg +3 -0
- images/AMD/AMRD26.jpeg +3 -0
- images/AMD/AMRD27.jpeg +3 -0
- images/AMD/AMRD28.jpeg +3 -0
- images/AMD/AMRD29.jpeg +3 -0
- images/AMD/AMRD3.jpeg +3 -0
- images/AMD/AMRD30.jpeg +3 -0
- images/AMD/AMRD31.jpeg +3 -0
- images/AMD/AMRD32.jpeg +3 -0
- images/AMD/AMRD33.jpeg +3 -0
- images/AMD/AMRD34.jpeg +3 -0
- images/AMD/AMRD35.jpeg +3 -0
- images/AMD/AMRD36.jpeg +3 -0
- images/AMD/AMRD37.jpeg +3 -0
- images/AMD/AMRD38.jpeg +3 -0
- images/AMD/AMRD39.jpeg +3 -0
- images/AMD/AMRD4.jpeg +3 -0
- images/AMD/AMRD40.jpeg +3 -0
- images/AMD/AMRD41.jpeg +3 -0
- images/AMD/AMRD42.jpeg +3 -0
- images/AMD/AMRD43.jpeg +3 -0
- images/AMD/AMRD44.jpeg +3 -0
- images/AMD/AMRD45.jpeg +3 -0
- images/AMD/AMRD46.jpeg +3 -0
- images/AMD/AMRD47.jpeg +3 -0
- images/AMD/AMRD48.jpeg +3 -0
- images/AMD/AMRD49.jpeg +3 -0
- images/AMD/AMRD5.jpeg +3 -0
- images/AMD/AMRD50.jpeg +3 -0
- images/AMD/AMRD51.jpeg +3 -0
- images/AMD/AMRD52.jpeg +3 -0
- images/AMD/AMRD53.jpeg +3 -0
README.md
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# OCTID Processed Dataset
|
| 2 |
+
|
| 3 |
+
Processed version of the OCTID retinal OCT dataset prepared for
|
| 4 |
+
research experiments comparing Swin Transformer architectures.
|
| 5 |
+
|
| 6 |
+
## Dataset Summary
|
| 7 |
+
|
| 8 |
+
- Dataset: OCTID
|
| 9 |
+
- Total images: 572
|
| 10 |
+
- Number of classes: 5
|
| 11 |
+
- Image size: 224 x 224
|
| 12 |
+
- Image mode: RGB
|
| 13 |
+
- Image format: JPEG
|
| 14 |
+
|
| 15 |
+
## Classes
|
| 16 |
+
|
| 17 |
+
| Class | Images |
|
| 18 |
+
|---|---:|
|
| 19 |
+
| Normal | 206 |
|
| 20 |
+
| AMD | 55 |
|
| 21 |
+
| CSR | 102 |
|
| 22 |
+
| DR | 107 |
|
| 23 |
+
| MH | 102 |
|
| 24 |
+
| Total | 572 |
|
| 25 |
+
|
| 26 |
+
## Preprocessing
|
| 27 |
+
|
| 28 |
+
The preprocessing pipeline consists of:
|
| 29 |
+
|
| 30 |
+
1. Aspect-ratio-preserving resize
|
| 31 |
+
2. Center crop to 224 x 224
|
| 32 |
+
3. Non-Local Means denoising
|
| 33 |
+
4. CLAHE enhancement
|
| 34 |
+
|
| 35 |
+
ImageNet normalization is intentionally not stored in the images.
|
| 36 |
+
It will be applied during the PyTorch training pipeline.
|
| 37 |
+
|
| 38 |
+
## Experimental Splits
|
| 39 |
+
|
| 40 |
+
Five repeated stratified splits are provided.
|
| 41 |
+
|
| 42 |
+
Each split contains approximately:
|
| 43 |
+
|
| 44 |
+
- 50% training
|
| 45 |
+
- 20% validation
|
| 46 |
+
- 30% testing
|
| 47 |
+
|
| 48 |
+
Seeds:
|
| 49 |
+
|
| 50 |
+
- 42
|
| 51 |
+
- 52
|
| 52 |
+
- 62
|
| 53 |
+
- 72
|
| 54 |
+
- 82
|
| 55 |
+
|
| 56 |
+
The same split files should be used when comparing different
|
| 57 |
+
models to ensure a fair experimental comparison.
|
| 58 |
+
|
| 59 |
+
## Repository Structure
|
| 60 |
+
|
| 61 |
+
images/
|
| 62 |
+
splits/
|
| 63 |
+
metadata/
|
| 64 |
+
README.md
|
| 65 |
+
|
| 66 |
+
## Intended Use
|
| 67 |
+
|
| 68 |
+
This processed dataset is intended for research experiments
|
| 69 |
+
involving retinal OCT image classification and comparison of
|
| 70 |
+
deep learning models, including Swin Transformer and custom
|
| 71 |
+
Swin Transformer architectures.
|
| 72 |
+
|
| 73 |
+
The provided split files should be used consistently across
|
| 74 |
+
models to maintain a fair comparison.
|
| 75 |
+
|
| 76 |
+
## Image Preprocessing
|
| 77 |
+
|
| 78 |
+
The saved images have already undergone:
|
| 79 |
+
|
| 80 |
+
- Aspect-ratio-preserving resize
|
| 81 |
+
- Center crop
|
| 82 |
+
- Non-Local Means denoising
|
| 83 |
+
- CLAHE enhancement
|
| 84 |
+
|
| 85 |
+
ImageNet normalization is NOT included in the saved JPEG files.
|
| 86 |
+
|
| 87 |
+
For model training, ImageNet normalization should be applied
|
| 88 |
+
after loading the image and converting it to a tensor.
|
| 89 |
+
|
| 90 |
+
## Reproducibility
|
| 91 |
+
|
| 92 |
+
The repository includes five stratified train/validation/test
|
| 93 |
+
splits and the experiment configuration used during dataset
|
| 94 |
+
preparation.
|
| 95 |
+
|
| 96 |
+
These files are provided so that the same experimental partitions
|
| 97 |
+
can be reused across different models.
|
| 98 |
+
|
| 99 |
+
## Dataset Integrity
|
| 100 |
+
|
| 101 |
+
- Original images checked: 572
|
| 102 |
+
- Corrupted original images: 0
|
| 103 |
+
- Original duplicate files: 0
|
| 104 |
+
- Processed images: 572
|
| 105 |
+
- Missing processed images: 0
|
| 106 |
+
- Processed duplicate files: 0
|
| 107 |
+
- Processed image size: 224 x 224
|
| 108 |
+
- Processed image mode: RGB
|
| 109 |
+
|
| 110 |
+
## License and Citation
|
| 111 |
+
|
| 112 |
+
This repository contains processed research data derived from OCTID.
|
| 113 |
+
|
| 114 |
+
Please consult the original OCTID dataset/source for its licensing,
|
| 115 |
+
citation requirements, and redistribution conditions before using
|
| 116 |
+
or publishing this dataset.
|
images/AMD/AMRD1.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD10.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD11.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD12.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD13.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD14.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD15.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD16.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD17.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD18.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD19.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD2.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD20.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD21.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD22.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD23.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD24.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD25.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD26.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD27.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD28.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD29.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD3.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD30.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD31.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD32.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD33.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD34.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD35.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD36.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD37.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD38.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD39.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD4.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD40.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD41.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD42.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD43.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD44.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD45.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD46.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD47.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD48.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD49.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD5.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD50.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD51.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD52.jpeg
ADDED
|
Git LFS Details
|
images/AMD/AMRD53.jpeg
ADDED
|
Git LFS Details
|