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- test/GTEX-1JJE9-2026.zarr/tables/virchow2_tiles/obs/_index/.zarray +25 -0
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train/GTEX-11GS4-1626.zarr/.zgroup
ADDED
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train/GTEX-11GS4-1626.zarr/zmetadata
ADDED
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13445
|
| 22 |
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|
| 23 |
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[
|
| 24 |
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|
| 25 |
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| 26 |
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| 28 |
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| 29 |
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"n_level": 3,
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|
| 32 |
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"shape": [
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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"spatialdata_attrs": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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| 43 |
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|
| 44 |
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|
| 45 |
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"height": 128,
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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"stride_height": 128,
|
| 50 |
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"stride_width": 128,
|
| 51 |
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"tissue_name": "tissues",
|
| 52 |
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"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-11PRG-1826.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-11PRG-1826.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
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|
| 32 |
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"shape": [
|
| 33 |
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42943,
|
| 34 |
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49799
|
| 35 |
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|
| 36 |
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},
|
| 37 |
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"spatialdata_attrs": {
|
| 38 |
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"spatialdata_software_version": "0.5.0",
|
| 39 |
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"version": "0.1"
|
| 40 |
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|
| 41 |
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"tile_spec": {
|
| 42 |
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"tiles": {
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| 43 |
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|
| 44 |
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|
| 45 |
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"height": 128,
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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"stride_height": 128,
|
| 50 |
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"stride_width": 128,
|
| 51 |
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"tissue_name": "tissues",
|
| 52 |
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"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-11ZTT-1926.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
{
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| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-11ZTT-1926.zarr/zmetadata
ADDED
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@@ -0,0 +1,626 @@
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| 32 |
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"shape": [
|
| 33 |
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37393,
|
| 34 |
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|
| 35 |
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|
| 36 |
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},
|
| 37 |
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"spatialdata_attrs": {
|
| 38 |
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|
| 39 |
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"version": "0.1"
|
| 40 |
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|
| 41 |
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"tile_spec": {
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| 42 |
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"tiles": {
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| 43 |
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|
| 44 |
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|
| 45 |
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"height": 128,
|
| 46 |
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|
| 47 |
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| 48 |
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| 49 |
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"stride_height": 128,
|
| 50 |
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"stride_width": 128,
|
| 51 |
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"tissue_name": "tissues",
|
| 52 |
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"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-11ZVC-1926.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
{
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| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
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train/GTEX-11ZVC-1926.zarr/zmetadata
ADDED
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@@ -0,0 +1,626 @@
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|
| 32 |
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"shape": [
|
| 33 |
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42313,
|
| 34 |
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|
| 35 |
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]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
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"spatialdata_software_version": "0.5.0",
|
| 39 |
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"version": "0.1"
|
| 40 |
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|
| 41 |
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"tile_spec": {
|
| 42 |
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"tiles": {
|
| 43 |
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"base_downsample": 1.0,
|
| 44 |
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"base_level": 0,
|
| 45 |
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"height": 128,
|
| 46 |
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"mpp": 0.4942,
|
| 47 |
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"ops_downsample": 1.0,
|
| 48 |
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"ops_level": 0,
|
| 49 |
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"stride_height": 128,
|
| 50 |
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"stride_width": 128,
|
| 51 |
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"tissue_name": "tissues",
|
| 52 |
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"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-1339X-1426.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
{
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| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-1339X-1426.zarr/zmetadata
ADDED
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@@ -0,0 +1,626 @@
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|
| 626 |
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}
|
train/GTEX-14BIL-1926.zarr/.zattrs
ADDED
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train/GTEX-14BIL-1926.zarr/.zgroup
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