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c574d3a | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 | /*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package tool.sieves;
import java.util.List;
import tool.util.Ling;
import tool.util.Terminology;
import tool.util.Util;
/**
*
* @author
*/
public class CompoundPhraseSieve extends Sieve {
public static String applyNCBI(String name) {
String cui = apply(name);
if (!cui.equals("") || (!name.contains(" and ") && !name.contains(" or ")))
return cui;
String compoundWord = name.contains(" and ") ? "and" : "or";
String[] nameTokens = name.split("\\s+");
int index = Util.getTokenIndex(nameTokens, compoundWord);
if (index == 1) {
String replacement1 = nameTokens[0];
String replacement2 = nameTokens[2].equals("the") ? nameTokens[2]+" "+nameTokens[3] : nameTokens[2];
String phrase = replacement1+" "+compoundWord+" "+replacement2;
replacement2 = nameTokens[2].equals("the") ? nameTokens[3] : nameTokens[2];
String cui1 = exactMatchSieve(name.replace(phrase, replacement1));
String cui2 = exactMatchSieve(name.replace(phrase, replacement2));
if (!cui1.equals("") && !cui2.equals("")) {
return Sieve.getTrainingDataTerminology().getCuiToNameListMap().containsKey(cui2+"|"+cui1) ? cui2+"|"+cui1 : cui1+"|"+cui2;
}
}
return "";
}
public static String apply(String name) {
String cui = getTerminologyNameCui(Sieve.getTrainingDataTerminology().getCompoundNameToCuiListMap(), name);
if (!cui.equals("")) {
return cui;
}
return getTerminologyNameCui(Sieve.getStandardTerminology().getCompoundNameToCuiListMap(), name);
}
public static void setCompoundNameTerminology(Terminology terminology, String conceptName, String[] conceptNameTokens, String cui) {
if (conceptName.contains("and/or")) {
List<Integer> indexes = Util.getTokenIndexes(conceptNameTokens, "and/or");
if (indexes.size() == 1) {
int index = indexes.get(0);
if (conceptName.matches("[a-zA-Z]+, [a-zA-Z]+ and/or [a-zA-Z]+.*")) {
String replacement1 = conceptNameTokens[index-2].replace(",", "");
String replacement2 = conceptNameTokens[index-1];
String replacement3 = conceptNameTokens[index+1];
String phrase = replacement1+", "+replacement2+" "+conceptNameTokens[index]+" "+replacement3;
terminology.setCompoundNameToCuiListMap(conceptName.replace(phrase, replacement1), cui);
terminology.setCompoundNameToCuiListMap(conceptName.replace(phrase, replacement2), cui);
terminology.setCompoundNameToCuiListMap(conceptName.replace(phrase, replacement3), cui);
}
else {
String replacement1 = conceptNameTokens[index-1];
String replacement2 = conceptNameTokens.length-1 == index+2 ?
conceptNameTokens[index+1]+" "+conceptNameTokens[index+2] :
conceptNameTokens[index+1];
String phrase = replacement1+" "+conceptNameTokens[index]+" "+replacement2;
terminology.setCompoundNameToCuiListMap(conceptName.replace(phrase, replacement1), cui);
terminology.setCompoundNameToCuiListMap(conceptName.replace(phrase, replacement2), cui);
}
}
}
}
}
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