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c574d3a | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 | /*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package tool.sieves;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import tool.Main;
import tool.MultiPassSieveNormalizer;
import tool.util.AmbiguityResolution;
import tool.util.Concept;
import tool.util.Terminology;
import tool.util.Util;
/**
*
* @author
*/
public abstract class Sieve {
//state of this class
private static Terminology standardTerminology = new Terminology();
public static void setStandardTerminology() throws IOException {
standardTerminology.loadTerminology();
}
public static Terminology getStandardTerminology() {
return standardTerminology;
}
private static Terminology trainingDataTerminology = new Terminology();
public static void setTrainingDataTerminology() throws IOException {
trainingDataTerminology.loadTrainingDataTerminology(Main.training_data_dir);
}
public static Terminology getTrainingDataTerminology() {
return trainingDataTerminology;
}
public static List<String> getTerminologyNameCuis(Map<String, List<String>> nameToCuiListMap, String name) {
return nameToCuiListMap.containsKey(name) ? nameToCuiListMap.get(name) : null;
}
public static String getTerminologyNameCui(Map<String, List<String>> nameToCuiListMap, String name) {
return nameToCuiListMap.containsKey(name) && nameToCuiListMap.get(name).size() == 1 ? nameToCuiListMap.get(name).get(0) : "";
}
public static String exactMatchSieve(String name) {
String cui = "";
//checks against names normalized by multi-pass sieve
cui = getTerminologyNameCui(Terminology.getNormalizedNameToCuiListMap(), name);
if (!cui.equals("")) {
return cui;
}
//checks against names in training data
cui = getTerminologyNameCui(trainingDataTerminology.getNameToCuiListMap(), name);
if (!cui.equals("")) {
return cui;
}
//checks against names in dictionary
return getTerminologyNameCui(standardTerminology.getNameToCuiListMap(), name);
}
public static List<String> getAlternateCuis(String cui) {
List<String> alternateCuis = new ArrayList<>();
if (trainingDataTerminology.getCuiAlternateCuiMap().containsKey(cui)) {
alternateCuis.addAll(trainingDataTerminology.getCuiAlternateCuiMap().get(cui));
}
if (standardTerminology.getCuiAlternateCuiMap().containsKey(cui)) {
alternateCuis.addAll(standardTerminology.getCuiAlternateCuiMap().get(cui));
}
return alternateCuis;
}
public static String normalize(List<String> namesKnowledgeBase) {
for (String name : namesKnowledgeBase) {
String cui = exactMatchSieve(name);
if (!cui.equals(""))
return cui;
}
return "";
}
}
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