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c574d3a | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 | /*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package tool.util;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import tool.Evaluation;
import tool.Logger;
import tool.sieves.Sieve;
/**
*
* @author
*/
public class AmbiguityResolution {
public static void start(DocumentConcepts concepts, Map<String, List<String>> cuiNamesMap) throws IOException {
for (Concept concept : concepts.getConcepts()) {
if (concept.getNormalizingSieve() != 1 || concept.getCui().equals("CUI-less")) {
Evaluation.evaluateClassification(concept, concepts);
Terminology.storeNormalizedConcept(concept);
continue;
}
String conceptName = concept.getName();
String[] conceptNameTokens = conceptName.split("\\s+");
List<String> trainingDataCuis = Sieve.getTrainingDataTerminology().getNameToCuiListMap().containsKey(conceptName) ?
Sieve.getTrainingDataTerminology().getNameToCuiListMap().get(conceptName) : null;
if (trainingDataCuis == null || trainingDataCuis.size() == 1) {
Evaluation.evaluateClassification(concept, concepts);
Terminology.storeNormalizedConcept(concept);
continue;
}
if (conceptNameTokens.length > 1)
concept.setCui("CUI-less");
else {
int countCUIMatch = 0;
for (String cui : trainingDataCuis) {
List<String> names = cuiNamesMap.containsKey(cui) ? cuiNamesMap.get(cui) : new ArrayList<String>();
for (String name : names) {
String[] nameTokens = name.split("\\s+");
if (nameTokens.length == 1)
continue;
if (name.matches(conceptName+" .*")) {
countCUIMatch++;
}
}
}
if (countCUIMatch > 0)
concept.setCui("CUI-less");
else
Terminology.storeNormalizedConcept(concept);
}
Evaluation.evaluateClassification(concept, concepts);
}
}
}
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