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c574d3a | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 | /*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package tool.util;
import java.util.ArrayList;
import java.util.List;
/**
*
* @author
*/
public class Concept {
private String indexes;
private String name;
private String nameExpansion;
private String stemmedName;
private String goldMeSHorSNOMEDCui;
private List<String> goldOMIMCuis;
private String cui;
private List<String> alternateCuis;
private int normalizingSieveLevel = 0;
private List<String> namesKnowledgeBase = new ArrayList<>();
private List<String> stemmedNamesKnowledgeBase = new ArrayList<>();
// private Map<String, List<String>> ruleWiseTransoformationMap = new HashMap<>();
public Concept(String name) {
this.name = Ling.correctSpelling(name.toLowerCase().trim());
}
/*
public void setRuleWiseMap(List<String> transformedNames)
{
ruleWiseTransoformationMap = Util.addUnique(this.namesKnowledgeBase, namesList);
}
*/
public Concept(String indexes, String name, String goldMeSHorSNOMEDCui, List<String> goldOMIMCuis) {
this.indexes = indexes;
this.name = Ling.correctSpelling(name.toLowerCase().trim());
this.goldMeSHorSNOMEDCui = goldMeSHorSNOMEDCui;
this.goldOMIMCuis = goldOMIMCuis;
}
public void setIndexes(String indexes) {
this.indexes = indexes;
}
public String getIndexes() {
return indexes;
}
public void setName(String name) {
this.name = Ling.correctSpelling(name.toLowerCase().trim());
}
public String getName() {
return name;
}
public void setNameExpansion(String text, Abbreviation abbreviationObject) {
nameExpansion = Abbreviation.getAbbreviationExpansion(abbreviationObject, text, name, indexes);
}
public String getNameExpansion() {
return nameExpansion;
}
public void setStemmedName() {
stemmedName = Ling.getStemmedPhrase(name);
}
public String getStemmedName() {
return stemmedName;
}
public void setCui(String cui) {
this.cui = cui;
}
public String getCui() {
return cui;
}
public void setAlternateCuis(List<String> alternateCuis) {
this.alternateCuis = new ArrayList<>();
for (String alternateCui : alternateCuis)
alternateCuis = Util.setList(this.alternateCuis, alternateCui);
}
public List<String> getAlternateCuis() {
return alternateCuis;
}
public void setNormalizingSieveLevel(int sieveLevel) {
this.normalizingSieveLevel = sieveLevel;
}
public int getNormalizingSieve() {
return normalizingSieveLevel;
}
public String getGoldMeSHorSNOMEDCui() {
return goldMeSHorSNOMEDCui;
}
public List<String> getGoldOMIMCuis() {
return goldOMIMCuis;
}
public String getGoldCui() {
if (!goldMeSHorSNOMEDCui.equals(""))
return goldMeSHorSNOMEDCui;
else
return goldOMIMCuis.size() == 1 ? goldOMIMCuis.get(0) : goldOMIMCuis.toString();
}
public void reinitializeNamesKnowledgeBase() {
this.namesKnowledgeBase = new ArrayList<>();
}
public void setNamesKnowledgeBase(String name) {
this.namesKnowledgeBase = Util.setList(this.namesKnowledgeBase, name);
}
public void setNamesKnowledgeBase(List<String> namesList) {
this.namesKnowledgeBase = Util.addUnique(this.namesKnowledgeBase, namesList);
}
public List<String> getNamesKnowledgeBase() {
return namesKnowledgeBase;
}
public void setStemmedNamesKnowledgeBase(List<String> namesList) {
this.stemmedNamesKnowledgeBase = Util.addUnique(this.stemmedNamesKnowledgeBase, namesList);
}
public List<String> getStemmedNamesKnowledgeBase() {
return stemmedNamesKnowledgeBase;
}
}
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