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c574d3a | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 | /*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package tool.util;
import java.util.ArrayList;
import java.util.List;
/**
*
* @author
*/
public class DocumentConcepts {
private String filename;
private String text;
private List<Concept> concepts;
public DocumentConcepts(String filename, String text) {
this.filename = filename;
this.text = text;
concepts = new ArrayList<>();
}
public String getFilename() {
return filename;
}
public String getText() {
return text;
}
public List<Concept> getConcepts() {
return concepts;
}
public void setConcept(String[] tokens, Abbreviation abbreviationObject) {
String[] cuis = tokens[4].contains("+") ? tokens[4].split("\\+") : tokens[4].split("\\|");
String MeSHorSNOMEDcuis = Terminology.getMeSHorSNOMEDCuis(cuis);
List<String> OMIMcuis = Terminology.getOMIMCuis(cuis);
Concept concept = new Concept(tokens[1], tokens[3], MeSHorSNOMEDcuis, OMIMcuis);
concept.setNameExpansion(text, abbreviationObject);
concept.setStemmedName();
concepts.add(concept);
}
}
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