{"record_kind": "run_header", "run_id": "pearl-manuscript-s2-20260916", "seq": 1, "trace_sequence": 1, "timestamp": "2026-09-16T10:24:12+00:00", "logged_at": "2026-09-16T10:24:12.350000+00:00", "source_agent": null, "scenario_id": "S2", "provenance": "manuscript-aligned-case-log-v1", "not_wet_lab": false, "world_contract": "manuscript-case-S2", "config": {"communication_mode": "typed_events", "ir_schema_version": 4}, "user_command": "Make purple using only red and green.", "sources": [{"well": "A1", "label": "Dye 1", "volume_ul": 15000}, {"well": "A2", "label": "Dye 2", "volume_ul": 15000}, {"well": "A3", "label": "Dye 3", "volume_ul": 15000}, {"well": "A4", "label": "Dye 4", "volume_ul": 15000}, {"well": "A5", "label": "Water", "volume_ul": 15000}], "constraints": ["Use only the liquids the instruction allows.", "No mixing procedure is prescribed."]}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 2, "trace_sequence": 2, "timestamp": "2026-09-16T10:24:24+00:00", "logged_at": "2026-09-16T10:24:24.350000+00:00", "source_agent": null, "event_id": "obs-s2-sources", "event_type": "observation", "observation_type": "public_measurement", "payload": {"observation_id": "s2-sources", "wells": {"reservoir:A1": {"hex": "#E10600", "identified": "red"}, "reservoir:A2": {"hex": "#2E8B3A", "identified": "green"}, "reservoir:A3": {"hex": "#1E4FD6", "identified": "blue"}, "reservoir:A4": {"hex": "#FFD400", "identified": "yellow"}, "reservoir:A5": {"hex": "#F4F7F8", "identified": "water"}}, "note": "Camera read of Dye 1 through Dye 4 and water. The reservoir labels do not name these colours."}}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 3, "trace_sequence": 3, "timestamp": "2026-09-16T10:24:36+00:00", "logged_at": "2026-09-16T10:24:36.350000+00:00", "source_agent": "planner", "event_id": "msg-0003", "event_type": "ir_proposed", "rationale": "The camera reads Dye 1 as red, Dye 2 as green, Dye 3 as blue, and Dye 4 as yellow.", "message": "The camera reads Dye 1 as red, Dye 2 as green, Dye 3 as blue, and Dye 4 as yellow."}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 4, "trace_sequence": 4, "timestamp": "2026-09-16T10:24:48+00:00", "logged_at": "2026-09-16T10:24:48.350000+00:00", "source_agent": "knowledge", "event_id": "know-color-mix-card-v1", "event_type": "observation", "observation_type": "knowledge_response", "payload": {"source_id": "color-mix-card-v1", "text": "Purple is a red-blue mixture. Red and green do not produce purple."}}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 5, "trace_sequence": 5, "timestamp": "2026-09-16T10:25:00+00:00", "logged_at": "2026-09-16T10:25:00.350000+00:00", "source_agent": "planner", "event_id": "msg-0005", "event_type": "recovery_decision", "rationale": "The instruction asks for purple from only red and green. Dye 1 and Dye 2 are those two colours, and they do not make purple. The instruction does not allow Dye 3, which reads blue. I will not dispense.", "message": "The instruction asks for purple from only red and green. Dye 1 and Dye 2 are those two colours, and they do not make purple. The instruction does not allow Dye 3, which reads blue. I will not dispense."}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 6, "trace_sequence": 6, "timestamp": "2026-09-16T10:25:12+00:00", "logged_at": "2026-09-16T10:25:12.350000+00:00", "source_agent": "planner", "event_id": "msg-0006", "event_type": "recovery_decision", "rationale": "This instruction is not feasible. I withhold physical execution and ask for an instruction that can produce purple.", "message": "This instruction is not feasible. I withhold physical execution and ask for an instruction that can produce purple."}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 7, "trace_sequence": 7, "timestamp": "2026-09-16T10:25:24+00:00", "logged_at": "2026-09-16T10:25:24.350000+00:00", "source_agent": "planner", "event_id": "plan-plan-s2-withhold", "event_type": "plan", "plan_id": "plan-s2-withhold", "revision_id": "rev_0", "rationale": "Dispatch the next approved action.", "canonical_operations": [{"action_id": "s2-withhold", "tool_name": "refuse", "reason": "infeasible_instruction", "liquids_dispensed": false}]}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 8, "trace_sequence": 8, "timestamp": "2026-09-16T10:25:36+00:00", "logged_at": "2026-09-16T10:25:36.350000+00:00", "source_agent": null, "event_id": "appr-appr-s2-withhold", "event_type": "proceed_signal", "plan_id": "plan-s2-withhold", "revision_id": "rev_0", "approval_id": "appr-s2-withhold", "approved_action_ids": ["s2-withhold"], "message": "Approved against the public deck and the stated instruction."}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 9, "trace_sequence": 9, "timestamp": "2026-09-16T10:25:48+00:00", "logged_at": "2026-09-16T10:25:48.350000+00:00", "source_agent": "actor", "event_id": "act-s2-withhold", "event_type": "tool_call", "tool_name": "refuse", "tool_call_id": "s2-withhold", "plan_id": "plan-s2-withhold", "revision_id": "rev_0", "executed": true, "params": {"action_id": "s2-withhold", "action_params": {"reason": "infeasible_instruction", "liquids_dispensed": false}, "approved_action_association": "associated"}, "result": {"ok": true, "error": "", "observation": {"actions_executed": 0, "transfers": 0}}, "result_observation_ids": ["obs-s2-withhold"], "state_delta": {"execution_disposition": "dispatched"}}
{"record_kind": "event", "run_id": "pearl-manuscript-s2-20260916", "seq": 10, "trace_sequence": 10, "timestamp": "2026-09-16T10:26:00+00:00", "logged_at": "2026-09-16T10:26:00.350000+00:00", "source_agent": "planner", "event_id": "done-S2", "event_type": "completion_decision", "plan_id": "plan-s2-withhold", "revision_id": "rev_0", "adopted": {"summary": "No liquid was dispensed. A feasible instruction was requested.", "actions_executed": 0, "transfers": 0}, "discarded": ["any transfer"], "message": "No liquid was dispensed. A feasible instruction was requested."}
{"record_kind": "trial", "run_id": "pearl-manuscript-s2-20260916", "seq": 11, "trace_sequence": 11, "timestamp": "2026-09-16T10:26:12+00:00", "logged_at": "2026-09-16T10:26:12.350000+00:00", "source_agent": null, "scenario_id": "S2", "termination": "completed", "not_wet_lab": false, "adopted": {"summary": "No liquid was dispensed. A feasible instruction was requested.", "actions_executed": 0, "transfers": 0}, "discarded": ["any transfer"], "commentary": "Withhold happens before any liquid move. The camera, not the reservoir labels, identified Dye 1 as red and Dye 2 as green. The conflict is recognized from the instruction and the mix card, and it is not pre-loaded as a conflict record."}