File size: 867 Bytes
b5159c0 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | #!/bin/bash
grep ">" test.fasta | sed 's/>//;s/[[:space:]].*//' > test_keys.txt
grep ">" train.fasta | sed 's/>//;s/[[:space:]].*//' > train_keys.txt
grep ">" val.fasta | sed 's/>//;s/[[:space:]].*//' > validate_keys.txt
awk -F',' '
FILENAME == "test_keys.txt" { test[$1]; next }
FILENAME == "train_keys.txt" { train[$1]; next }
FILENAME == "validate_keys.txt" { validate[$1]; next }
FILENAME == "iiab_db.csv" {
if (FNR == 1) {
print $0 > "test_data.csv"
print $0 > "train_data.csv"
print $0 > "validate_data.csv"
next
}
if ($1 in test) {
print $0 >> "test_data.csv"
} else if ($1 in train) {
print $0 >> "train_data.csv"
} else if ($1 in validate) {
print $0 >> "validate_data.csv"
}
}
' test_keys.txt train_keys.txt validate_keys.txt iiab_db.csv
head -n 5 test_keys.txt
rm test_keys.txt train_keys.txt validate_keys.txt
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