#!/bin/bash grep ">" test.fasta | sed 's/>//;s/[[:space:]].*//' > test_keys.txt grep ">" train.fasta | sed 's/>//;s/[[:space:]].*//' > train_keys.txt grep ">" val.fasta | sed 's/>//;s/[[:space:]].*//' > validate_keys.txt awk -F',' ' FILENAME == "test_keys.txt" { test[$1]; next } FILENAME == "train_keys.txt" { train[$1]; next } FILENAME == "validate_keys.txt" { validate[$1]; next } FILENAME == "iiab_db.csv" { if (FNR == 1) { print $0 > "test_data.csv" print $0 > "train_data.csv" print $0 > "validate_data.csv" next } if ($1 in test) { print $0 >> "test_data.csv" } else if ($1 in train) { print $0 >> "train_data.csv" } else if ($1 in validate) { print $0 >> "validate_data.csv" } } ' test_keys.txt train_keys.txt validate_keys.txt iiab_db.csv head -n 5 test_keys.txt rm test_keys.txt train_keys.txt validate_keys.txt