fix broken README.md
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README.md
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@@ -4,15 +4,6 @@ license: cc-by-4.0
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size_categories:
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- 100k<n<1M
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pretty_name: 'Microbiome Immunity Project: Protein Universe'
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config_names:
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- rosetta_high_quality_models
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- rosetta_low_quality_models
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- dmpfold_high_quality_models
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- dmpfold_low_quality_models
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- rosetta_high_quality_function_predictions
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- rosetta_low_quality_function_predictions
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- dmpfold_high_quality_function_predictions
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- dmpfold_low_quality_function_predictions
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tags:
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- chemistry
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- biology
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@@ -55,6 +46,16 @@ citation_apa: Koehler Leman, J., Szczerbiak, P., Renfrew, P. D., Gligorijevic, V
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Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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doi:10.1038/s41467-023-37896-w
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configs:
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- config_name: rosetta_high_quality_models
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data_files:
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@@ -70,7 +71,37 @@ configs:
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path: dmpfold_high_quality_models/data/train-*
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- config_name: dmpfold_low_quality_models
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data_files:
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- name: train
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- config_name: rosetta_low_quality_models
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features:
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- name: id
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@@ -97,6 +128,9 @@ configs:
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dtype: float64
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splits:
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- name: train
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- config_name: dmpfold_high_quality_models
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features:
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- name: id
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@@ -114,13 +148,13 @@ configs:
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splits:
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- name: train
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- config_name: rosetta_high_quality_function_predictions
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-
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- config_name: rosetta_low_quality_function_predictions
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-
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- config_name: dmpfold_high_quality_function_predictions
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-
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- config_name: dmpfold_low_quality_function_predictions
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-
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- config_name: DeepFRI_labels
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features:
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- name: label_id
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size_categories:
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- 100k<n<1M
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pretty_name: 'Microbiome Immunity Project: Protein Universe'
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tags:
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- chemistry
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- biology
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Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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doi:10.1038/s41467-023-37896-w
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config_names:
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- rosetta_high_quality_models
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- rosetta_low_quality_models
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- dmpfold_high_quality_models
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- dmpfold_low_quality_models
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- rosetta_high_quality_function_predictions
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- rosetta_low_quality_function_predictions
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- dmpfold_high_quality_function_predictions
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- dmpfold_low_quality_function_predictions
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configs:
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- config_name: rosetta_high_quality_models
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data_files:
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path: dmpfold_high_quality_models/data/train-*
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- config_name: dmpfold_low_quality_models
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data_files:
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- split: train
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path: dmpfold_low_quality_models/data/train-*
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dataset_info:
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- config_name: rosetta_high_quality_models
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features:
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- name: id
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dtype: string
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- name: pdb
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dtype: large_string
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- name: Filter_Stage2_aBefore
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dtype: float64
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- name: Filter_Stage2_bQuarter
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dtype: float64
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- name: Filter_Stage2_cHalf
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dtype: float64
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- name: Filter_Stage2_dEnd
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dtype: float64
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- name: clashes_bb
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dtype: float64
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- name: clashes_total
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dtype: float64
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- name: score
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dtype: float64
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- name: silent_score
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dtype: float64
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- name: time
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dtype: float64
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splits:
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- name: train
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- config_name: rosetta_low_quality_models
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features:
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- name: id
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dtype: float64
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splits:
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- name: train
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- config_name: dmpfold_low_quality_models
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data_files:
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- name: train
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- config_name: dmpfold_high_quality_models
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features:
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- name: id
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splits:
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- name: train
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- config_name: rosetta_high_quality_function_predictions
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splits: train
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- config_name: rosetta_low_quality_function_predictions
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splits: train
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- config_name: dmpfold_high_quality_function_predictions
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splits: train
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- config_name: dmpfold_low_quality_function_predictions
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splits: train
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- config_name: DeepFRI_labels
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features:
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- name: label_id
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