diff --git "a/intermediate/seqwindows.fasta" "b/intermediate/seqwindows.fasta"
new file mode 100644--- /dev/null
+++ "b/intermediate/seqwindows.fasta"
@@ -0,0 +1,10312 @@
+>0
+CQRRHTLPASE
+>1
+VYRNRTLQKWH
+>2
+KKKKITVFKEI
+>3
+TVPNDYMTSPA
+>4
+VTRRYSDGWCE
+>5
+VTRRYSDGWCE
+>6
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+>7
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+>8
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+>9
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+>10
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+>11
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+>12
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+>13
+DSPPQSPTFPE
+>14
+RPRPGSLRSKP
+>15
+GPQFGSEVELR
+>16
+SGENPYASIDI
+>17
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+>18
+SGENPYASIDI
+>19
+ENPYASIDISK
+>20
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+>21
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+>22
+SRVSETEYSAL
+>23
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+>24
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+>25
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+>26
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+>27
+MVDYHAANQ
+>28
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+>29
+YVSSFYHAFSG
+>30
+AANQSYQYGPS
+>31
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+>32
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+>33
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+>34
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+>35
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+>36
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+>37
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+>38
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+>39
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+>40
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+>41
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+>42
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+>43
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+>44
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+>45
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+>46
+KKKFRTPSFLK
+>47
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+>49
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+>54
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+>61
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+>62
+AELNQSEEPEA
+>63
+FNTDPYVREFG
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+>66
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+>68
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+>71
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+>87
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+>88
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+>97
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+>117
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+>191
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+>194
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+>197
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+>198
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+>199
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+>200
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+>201
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+>203
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+>208
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+>209
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+>211
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+>233
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+>235
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+>238
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+>239
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+>241
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+>243
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+>244
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+>245
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+>246
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+>247
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+>248
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+>249
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+>250
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+>251
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+>252
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+>253
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+>254
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+>255
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+>256
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+>257
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+>258
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+>259
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+>260
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+>261
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+>262
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+>268
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+>269
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+>270
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+>286
+PDEILYVNMDE
+>287
+RPRTRSNPEGA
+>288
+RPRTRSNPEGA
+>289
+FADDISLLK
+>290
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+>291
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+>292
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+>293
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+>294
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+>295
+ENAYEYFTKIA
+>296
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+>301
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+TKIATSLFESG
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+>334
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+>336
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+>341
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+>342
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+>343
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+>364
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+>377
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+>410
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+>414
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+>417
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+>418
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+>420
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+>422
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+>426
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+>429
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+>431
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+>448
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+>451
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+>477
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+>478
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+>482
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+>483
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+>484
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+>488
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+>489
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+>490
+STHCPSNNVIS
+>491
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+>492
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+>493
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+>494
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+>495
+GAILTTMLATR
+>496
+MHRQETVDCLK
+>497
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+>498
+EERSMSAPGNL
+>499
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+>500
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+>501
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+>502
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+>503
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+>504
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+>505
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+>506
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+>507
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+>508
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+>509
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+>510
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+>511
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+>516
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+>517
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+>518
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+>519
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+>520
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+>521
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+>522
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+>523
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+>524
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+>525
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+>526
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+>527
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+>528
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+>532
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+>533
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+>534
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+>535
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+>537
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+>540
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+>542
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+>545
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+>546
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+>547
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+>548
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+>549
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+>550
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+>551
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+>552
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+>553
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+>554
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+>555
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+>556
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+>557
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+>558
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+>559
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+>560
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+>561
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+>562
+TVWYEYGCV
+>563
+LSRLSYTTIST
+>564
+SIASLSRLSYT
+>565
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