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- sabdab_dataset/1a6t/abangle/1a6t.abangle +3 -0
- sabdab_dataset/1a6t/annotation/1a6t_A_VL.ann +108 -0
- sabdab_dataset/1a6t/annotation/1a6t_B_VH.ann +117 -0
- sabdab_dataset/1a6t/annotation/1a6t_C_VL.ann +108 -0
- sabdab_dataset/1a6t/annotation/1a6t_D_VH.ann +117 -0
- sabdab_dataset/1a6t/imgt/1a6t_A_L.ann +4 -0
- sabdab_dataset/1a6t/imgt/1a6t_B_H.ann +4 -0
- sabdab_dataset/1a6t/imgt/1a6t_C_L.ann +4 -0
- sabdab_dataset/1a6t/imgt/1a6t_D_H.ann +4 -0
- sabdab_dataset/1a6t/sequence/1a6t_A_VL.fa +6 -0
- sabdab_dataset/1a6t/sequence/1a6t_B_VH.fa +6 -0
- sabdab_dataset/1a6t/sequence/1a6t_C_VL.fa +6 -0
- sabdab_dataset/1a6t/sequence/1a6t_D_VH.fa +6 -0
- sabdab_dataset/1a6t/sequence/1a6t_raw.pdb +8 -0
- sabdab_dataset/1a6t/structure/1a6t.pdb +0 -0
- sabdab_dataset/1a6t/structure/chothia/1a6t.pdb +0 -0
- sabdab_dataset/1ind/abangle/1ind.abangle +2 -0
- sabdab_dataset/1ind/annotation/1ind_H_VH.ann +114 -0
- sabdab_dataset/1ind/annotation/1ind_L_VL.ann +112 -0
- sabdab_dataset/1ind/imgt/1ind_H_H.ann +4 -0
- sabdab_dataset/1ind/imgt/1ind_L_L.ann +4 -0
- sabdab_dataset/1ind/sequence/1ind_H_VH.fa +6 -0
- sabdab_dataset/1ind/sequence/1ind_L_VL.fa +6 -0
- sabdab_dataset/1ind/sequence/1ind_raw.pdb +4 -0
- sabdab_dataset/1ind/structure/1ind.pdb +0 -0
- sabdab_dataset/1ind/structure/chothia/1ind.pdb +0 -0
- sabdab_dataset/1kcv/abangle/1kcv.abangle +2 -0
- sabdab_dataset/1kcv/annotation/1kcv_H_VH.ann +116 -0
- sabdab_dataset/1kcv/annotation/1kcv_L_VL.ann +109 -0
- sabdab_dataset/1kcv/imgt/1kcv_H_H.ann +4 -0
- sabdab_dataset/1kcv/imgt/1kcv_L_L.ann +4 -0
- sabdab_dataset/1kcv/sequence/1kcv_H_VH.fa +6 -0
- sabdab_dataset/1kcv/sequence/1kcv_L_VL.fa +6 -0
- sabdab_dataset/1kcv/sequence/1kcv_raw.pdb +4 -0
- sabdab_dataset/1kcv/structure/1kcv.pdb +0 -0
- sabdab_dataset/1kcv/structure/chothia/1kcv.pdb +0 -0
- sabdab_dataset/1mh5/abangle/1mh5.abangle +3 -0
- sabdab_dataset/1mh5/annotation/1mh5_A_VL.ann +114 -0
- sabdab_dataset/1mh5/annotation/1mh5_B_VH.ann +119 -0
- sabdab_dataset/1mh5/annotation/1mh5_H_VH.ann +119 -0
- sabdab_dataset/1mh5/annotation/1mh5_L_VL.ann +114 -0
- sabdab_dataset/1mh5/imgt/1mh5_A_L.ann +4 -0
- sabdab_dataset/1mh5/imgt/1mh5_B_H.ann +4 -0
- sabdab_dataset/1mh5/imgt/1mh5_H_H.ann +4 -0
- sabdab_dataset/1mh5/imgt/1mh5_L_L.ann +4 -0
- sabdab_dataset/1mh5/sequence/1mh5_A_VL.fa +6 -0
- sabdab_dataset/1mh5/sequence/1mh5_B_VH.fa +6 -0
- sabdab_dataset/1mh5/sequence/1mh5_H_VH.fa +6 -0
- sabdab_dataset/1mh5/sequence/1mh5_L_VL.fa +6 -0
- sabdab_dataset/1mh5/sequence/1mh5_raw.pdb +8 -0
sabdab_dataset/1a6t/abangle/1a6t.abangle
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pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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1a6t D C 0 -59.23 73.30 114.25 118.20 81.87 16.23
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1a6t B A 0 -58.84 73.08 114.19 118.80 81.43 16.25
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sabdab_dataset/1a6t/annotation/1a6t_A_VL.ann
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sabdab_dataset/1a6t/annotation/1a6t_B_VH.ann
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sabdab_dataset/1a6t/annotation/1a6t_C_VL.ann
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 Q
|
| 2 |
+
L2 S
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 S
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 I
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 K
|
| 19 |
+
L19 V
|
| 20 |
+
L20 I
|
| 21 |
+
L21 M
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 S
|
| 25 |
+
L25 P
|
| 26 |
+
L26 S
|
| 27 |
+
L27 S
|
| 28 |
+
L28 S
|
| 29 |
+
L29 V
|
| 30 |
+
L30 S
|
| 31 |
+
L32 Y
|
| 32 |
+
L33 M
|
| 33 |
+
L34 Q
|
| 34 |
+
L35 W
|
| 35 |
+
L36 Y
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 S
|
| 42 |
+
L43 S
|
| 43 |
+
L44 P
|
| 44 |
+
L45 K
|
| 45 |
+
L46 P
|
| 46 |
+
L47 W
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 S
|
| 50 |
+
L51 T
|
| 51 |
+
L52 S
|
| 52 |
+
L53 N
|
| 53 |
+
L54 L
|
| 54 |
+
L55 A
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 V
|
| 58 |
+
L59 P
|
| 59 |
+
L60 G
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 G
|
| 65 |
+
L66 G
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 T
|
| 69 |
+
L70 S
|
| 70 |
+
L71 F
|
| 71 |
+
L72 S
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 G
|
| 77 |
+
L78 V
|
| 78 |
+
L79 E
|
| 79 |
+
L80 A
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 A
|
| 83 |
+
L84 A
|
| 84 |
+
L85 T
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 Q
|
| 89 |
+
L90 Q
|
| 90 |
+
L91 Y
|
| 91 |
+
L92 S
|
| 92 |
+
L93 S
|
| 93 |
+
L94 H
|
| 94 |
+
L95 P
|
| 95 |
+
L96 L
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 G
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 L
|
| 104 |
+
L105 E
|
| 105 |
+
L106 L
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 A
|
sabdab_dataset/1a6t/annotation/1a6t_D_VH.ann
ADDED
|
@@ -0,0 +1,117 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 D
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 S
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 T
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 S
|
| 41 |
+
H41 H
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 S
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 R
|
| 51 |
+
H51 V
|
| 52 |
+
H52 D
|
| 53 |
+
H52A P
|
| 54 |
+
H53 D
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 G
|
| 58 |
+
H57 T
|
| 59 |
+
H58 S
|
| 60 |
+
H59 F
|
| 61 |
+
H60 N
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 I
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 V
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 E
|
| 83 |
+
H82 L
|
| 84 |
+
H82A G
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 R
|
| 100 |
+
H96 D
|
| 101 |
+
H97 D
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 F
|
| 105 |
+
H101 D
|
| 106 |
+
H102 F
|
| 107 |
+
H103 W
|
| 108 |
+
H104 G
|
| 109 |
+
H105 Q
|
| 110 |
+
H106 G
|
| 111 |
+
H107 T
|
| 112 |
+
H108 S
|
| 113 |
+
H109 L
|
| 114 |
+
H110 T
|
| 115 |
+
H111 V
|
| 116 |
+
H112 S
|
| 117 |
+
H113 S
|
sabdab_dataset/1a6t/imgt/1a6t_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-72*01 IG IGKV IGKV4 IGKV4-72 NA True
|
sabdab_dataset/1a6t/imgt/1a6t_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2C*01 IG IGHC IGHG2C IGHG2C IGg True
|
| 3 |
+
J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 4 |
+
V Mus_musculus IGHV1-26*01 IG IGHV IGHV1 IGHV1-26 NA True
|
sabdab_dataset/1a6t/imgt/1a6t_C_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-72*01 IG IGKV IGKV4 IGKV4-72 NA True
|
sabdab_dataset/1a6t/imgt/1a6t_D_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2C*01 IG IGHC IGHG2C IGHG2C IGg True
|
| 3 |
+
J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 4 |
+
V Mus_musculus IGHV1-26*01 IG IGHV IGHV1 IGHV1-26 NA True
|
sabdab_dataset/1a6t/sequence/1a6t_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1a6t_A|seqres|full
|
| 2 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 3 |
+
>1a6t_A|seqres|region: L
|
| 4 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRA------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1a6t_A|structure|full
|
| 6 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
sabdab_dataset/1a6t/sequence/1a6t_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1a6t_B|seqres|full
|
| 2 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
| 3 |
+
>1a6t_B|seqres|region: H
|
| 4 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSS----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1a6t_B|structure|full
|
| 6 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
sabdab_dataset/1a6t/sequence/1a6t_C_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1a6t_C|seqres|full
|
| 2 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 3 |
+
>1a6t_C|seqres|region: L
|
| 4 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRA------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1a6t_C|structure|full
|
| 6 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
sabdab_dataset/1a6t/sequence/1a6t_D_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1a6t_D|seqres|full
|
| 2 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
| 3 |
+
>1a6t_D|seqres|region: H
|
| 4 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSS----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1a6t_D|structure|full
|
| 6 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
sabdab_dataset/1a6t/sequence/1a6t_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1a6t_A|type: L
|
| 2 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 3 |
+
>1a6t_C|type: L
|
| 4 |
+
QSVLSQSPAILSASPGEKVIMTCSPSSSVSYMQWYQQKPGSSPKPWIYSTSNLASGVPGRFSGGGSGTSFSLTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 5 |
+
>1a6t_B|type: H
|
| 6 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
| 7 |
+
>1a6t_D|type: H
|
| 8 |
+
EVQLQQSGPDLVKPGASVKISCKASGYSFSTYYMHWVKQSHGKSLEWIGRVDPDNGGTSFNQKFKGKAILTVDKSSSTAYMELGSLTSEDSAVYYCARRDDYYFDFWGQGTSLTVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQTITCNVAHPASSTKVDKKIEPR
|
sabdab_dataset/1a6t/structure/1a6t.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1a6t/structure/chothia/1a6t.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1ind/abangle/1ind.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1ind H L 0 -59.96 67.48 118.86 116.36 85.18 15.93
|
sabdab_dataset/1ind/annotation/1ind_H_VH.ann
ADDED
|
@@ -0,0 +1,114 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 T
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 D
|
| 11 |
+
H11 S
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 L
|
| 30 |
+
H30 S
|
| 31 |
+
H31 G
|
| 32 |
+
H32 E
|
| 33 |
+
H33 T
|
| 34 |
+
H34 M
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 T
|
| 41 |
+
H41 P
|
| 42 |
+
H42 E
|
| 43 |
+
H43 K
|
| 44 |
+
H44 R
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 T
|
| 51 |
+
H51 T
|
| 52 |
+
H52 L
|
| 53 |
+
H52A S
|
| 54 |
+
H53 G
|
| 55 |
+
H54 G
|
| 56 |
+
H55 G
|
| 57 |
+
H56 F
|
| 58 |
+
H57 T
|
| 59 |
+
H58 F
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 S
|
| 62 |
+
H61 A
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 R
|
| 73 |
+
H72 D
|
| 74 |
+
H73 N
|
| 75 |
+
H74 A
|
| 76 |
+
H75 Q
|
| 77 |
+
H76 N
|
| 78 |
+
H77 N
|
| 79 |
+
H78 L
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 L
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 S
|
| 99 |
+
H95 H
|
| 100 |
+
H96 R
|
| 101 |
+
H97 F
|
| 102 |
+
H101 V
|
| 103 |
+
H102 H
|
| 104 |
+
H103 W
|
| 105 |
+
H104 G
|
| 106 |
+
H105 H
|
| 107 |
+
H106 G
|
| 108 |
+
H107 T
|
| 109 |
+
H108 L
|
| 110 |
+
H109 V
|
| 111 |
+
H110 T
|
| 112 |
+
H111 V
|
| 113 |
+
H112 S
|
| 114 |
+
H113 A
|
sabdab_dataset/1ind/annotation/1ind_L_VL.ann
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 E
|
| 2 |
+
L2 A
|
| 3 |
+
L3 V
|
| 4 |
+
L4 V
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 E
|
| 8 |
+
L8 S
|
| 9 |
+
L9 A
|
| 10 |
+
L11 L
|
| 11 |
+
L12 T
|
| 12 |
+
L13 T
|
| 13 |
+
L14 S
|
| 14 |
+
L15 P
|
| 15 |
+
L16 G
|
| 16 |
+
L17 E
|
| 17 |
+
L18 T
|
| 18 |
+
L19 V
|
| 19 |
+
L20 T
|
| 20 |
+
L21 L
|
| 21 |
+
L22 T
|
| 22 |
+
L23 C
|
| 23 |
+
L24 R
|
| 24 |
+
L25 S
|
| 25 |
+
L26 S
|
| 26 |
+
L27 T
|
| 27 |
+
L28 G
|
| 28 |
+
L29 A
|
| 29 |
+
L30 V
|
| 30 |
+
L30A T
|
| 31 |
+
L30B T
|
| 32 |
+
L30C S
|
| 33 |
+
L31 N
|
| 34 |
+
L32 Y
|
| 35 |
+
L33 A
|
| 36 |
+
L34 N
|
| 37 |
+
L35 W
|
| 38 |
+
L36 V
|
| 39 |
+
L37 Q
|
| 40 |
+
L38 E
|
| 41 |
+
L39 K
|
| 42 |
+
L40 P
|
| 43 |
+
L41 D
|
| 44 |
+
L42 H
|
| 45 |
+
L43 L
|
| 46 |
+
L44 F
|
| 47 |
+
L45 T
|
| 48 |
+
L46 G
|
| 49 |
+
L47 L
|
| 50 |
+
L48 I
|
| 51 |
+
L49 G
|
| 52 |
+
L50 G
|
| 53 |
+
L51 T
|
| 54 |
+
L52 N
|
| 55 |
+
L53 N
|
| 56 |
+
L54 R
|
| 57 |
+
L55 A
|
| 58 |
+
L56 P
|
| 59 |
+
L57 G
|
| 60 |
+
L58 V
|
| 61 |
+
L59 P
|
| 62 |
+
L60 A
|
| 63 |
+
L61 R
|
| 64 |
+
L62 F
|
| 65 |
+
L63 S
|
| 66 |
+
L64 G
|
| 67 |
+
L65 S
|
| 68 |
+
L66 L
|
| 69 |
+
L67 I
|
| 70 |
+
L68 G
|
| 71 |
+
L69 D
|
| 72 |
+
L70 K
|
| 73 |
+
L71 A
|
| 74 |
+
L72 A
|
| 75 |
+
L73 L
|
| 76 |
+
L74 T
|
| 77 |
+
L75 I
|
| 78 |
+
L76 T
|
| 79 |
+
L77 G
|
| 80 |
+
L78 A
|
| 81 |
+
L79 Q
|
| 82 |
+
L80 T
|
| 83 |
+
L81 E
|
| 84 |
+
L82 D
|
| 85 |
+
L83 E
|
| 86 |
+
L84 A
|
| 87 |
+
L85 R
|
| 88 |
+
L86 Y
|
| 89 |
+
L87 F
|
| 90 |
+
L88 C
|
| 91 |
+
L89 A
|
| 92 |
+
L90 L
|
| 93 |
+
L91 W
|
| 94 |
+
L92 Y
|
| 95 |
+
L93 S
|
| 96 |
+
L94 N
|
| 97 |
+
L95 L
|
| 98 |
+
L96 W
|
| 99 |
+
L97 V
|
| 100 |
+
L98 F
|
| 101 |
+
L99 G
|
| 102 |
+
L100 G
|
| 103 |
+
L101 G
|
| 104 |
+
L102 T
|
| 105 |
+
L103 K
|
| 106 |
+
L104 L
|
| 107 |
+
L105 T
|
| 108 |
+
L106 V
|
| 109 |
+
L106A L
|
| 110 |
+
L107 G
|
| 111 |
+
L108 Q
|
| 112 |
+
L109 P
|
sabdab_dataset/1ind/imgt/1ind_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV5-9*03 IG IGHV IGHV5 IGHV5-9 NA True
|
sabdab_dataset/1ind/imgt/1ind_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGLC1*01 IG IGLC IGLC1 IGLC1 NA True
|
| 3 |
+
J Mus_musculus IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
|
| 4 |
+
V Mus_musculus IGLV1*01 IG IGLV IGLV1 IGLV1 NA True
|
sabdab_dataset/1ind/sequence/1ind_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ind_H|seqres|full
|
| 2 |
+
EVTLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHRFVHWGHGTLVTVSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLESDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPE
|
| 3 |
+
>1ind_H|seqres|region: H
|
| 4 |
+
EVTLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHRFVHWGHGTLVTVSA----------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ind_H|structure|full
|
| 6 |
+
EVTLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHRFVHWGHGTLVTVSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLESDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR-------------
|
sabdab_dataset/1ind/sequence/1ind_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ind_L|seqres|full
|
| 2 |
+
EAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEARYFCALWYSNLWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTIIDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTAREWERHSSYSCQVTHEGHTVEKSLSRADCS
|
| 3 |
+
>1ind_L|seqres|region: L
|
| 4 |
+
EAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEARYFCALWYSNLWVFGGGTKLTVLGQP-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ind_L|structure|full
|
| 6 |
+
-AVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEARYFCALWYSNLWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTIIDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTAREWERHSSYSCQVTHEGHTVEKSLSRA---
|
sabdab_dataset/1ind/sequence/1ind_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ind_H|type: H
|
| 2 |
+
EVTLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHRFVHWGHGTLVTVSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLESDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPE
|
| 3 |
+
>1ind_L|type: L
|
| 4 |
+
EAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEARYFCALWYSNLWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTIIDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTAREWERHSSYSCQVTHEGHTVEKSLSRADCS
|
sabdab_dataset/1ind/structure/1ind.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1ind/structure/chothia/1ind.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1kcv/abangle/1kcv.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1kcv H L 0 -61.31 75.29 116.65 117.34 83.21 16.19
|
sabdab_dataset/1kcv/annotation/1kcv_H_VH.ann
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 T
|
| 4 |
+
H4 L
|
| 5 |
+
H5 S
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 S
|
| 16 |
+
H16 Q
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 S
|
| 20 |
+
H20 L
|
| 21 |
+
H21 T
|
| 22 |
+
H22 C
|
| 23 |
+
H23 T
|
| 24 |
+
H24 V
|
| 25 |
+
H25 T
|
| 26 |
+
H26 S
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 S
|
| 29 |
+
H29 I
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H31A D
|
| 33 |
+
H32 Y
|
| 34 |
+
H33 A
|
| 35 |
+
H34 W
|
| 36 |
+
H35 N
|
| 37 |
+
H36 W
|
| 38 |
+
H37 I
|
| 39 |
+
H38 R
|
| 40 |
+
H39 Q
|
| 41 |
+
H40 F
|
| 42 |
+
H41 A
|
| 43 |
+
H42 G
|
| 44 |
+
H43 Q
|
| 45 |
+
H44 S
|
| 46 |
+
H45 L
|
| 47 |
+
H46 E
|
| 48 |
+
H47 W
|
| 49 |
+
H48 M
|
| 50 |
+
H49 G
|
| 51 |
+
H50 Y
|
| 52 |
+
H51 I
|
| 53 |
+
H52 S
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 S
|
| 56 |
+
H55 G
|
| 57 |
+
H56 S
|
| 58 |
+
H57 T
|
| 59 |
+
H58 S
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 P
|
| 63 |
+
H62 S
|
| 64 |
+
H63 L
|
| 65 |
+
H64 K
|
| 66 |
+
H65 S
|
| 67 |
+
H66 R
|
| 68 |
+
H67 I
|
| 69 |
+
H68 S
|
| 70 |
+
H69 I
|
| 71 |
+
H70 T
|
| 72 |
+
H71 R
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 Q
|
| 79 |
+
H78 F
|
| 80 |
+
H79 F
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C V
|
| 87 |
+
H83 T
|
| 88 |
+
H84 T
|
| 89 |
+
H85 D
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 G
|
| 100 |
+
H96 G
|
| 101 |
+
H97 T
|
| 102 |
+
H98 G
|
| 103 |
+
H99 F
|
| 104 |
+
H101 P
|
| 105 |
+
H102 Y
|
| 106 |
+
H103 W
|
| 107 |
+
H104 G
|
| 108 |
+
H105 T
|
| 109 |
+
H106 G
|
| 110 |
+
H107 T
|
| 111 |
+
H108 N
|
| 112 |
+
H109 V
|
| 113 |
+
H110 T
|
| 114 |
+
H111 V
|
| 115 |
+
H112 S
|
| 116 |
+
H113 A
|
sabdab_dataset/1kcv/annotation/1kcv_L_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 K
|
| 10 |
+
L10 S
|
| 11 |
+
L11 M
|
| 12 |
+
L12 G
|
| 13 |
+
L13 M
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 A
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 L
|
| 22 |
+
L22 N
|
| 23 |
+
L23 C
|
| 24 |
+
L24 K
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 E
|
| 28 |
+
L28 N
|
| 29 |
+
L29 V
|
| 30 |
+
L30 G
|
| 31 |
+
L31 T
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 V
|
| 34 |
+
L34 S
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 Q
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 V
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 G
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 N
|
| 54 |
+
L54 R
|
| 55 |
+
L55 Y
|
| 56 |
+
L56 T
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 D
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 T
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 A
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 V
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 A
|
| 81 |
+
L81 D
|
| 82 |
+
L82 D
|
| 83 |
+
L83 D
|
| 84 |
+
L84 A
|
| 85 |
+
L85 D
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 G
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 S
|
| 92 |
+
L92 Y
|
| 93 |
+
L93 S
|
| 94 |
+
L94 S
|
| 95 |
+
L95 P
|
| 96 |
+
L96 L
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 G
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 L
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/1kcv/imgt/1kcv_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV3-2*02 IG IGHV IGHV3 IGHV3-2 NA True
|
sabdab_dataset/1kcv/imgt/1kcv_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV6-20*01 IG IGKV IGKV6 IGKV6-20 NA True
|
sabdab_dataset/1kcv/sequence/1kcv_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1kcv_H|seqres|full
|
| 2 |
+
QVTLSQSGPGLVKPSQSLSLTCTVTSYSITSDYAWNWIRQFAGQSLEWMGYISYSGSTSYNPSLKSRISITRDTSKNQFFLQLNSVTTDDTATYYCARGGTGFPYWGTGTNVTVSAASTTAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWPSASVTCLVAHPKSSTAADKKIEPKD
|
| 3 |
+
>1kcv_H|seqres|region: H
|
| 4 |
+
QVTLSQSGPGLVKPSQSLSLTCTVTSYSITSDYAWNWIRQFAGQSLEWMGYISYSGSTSYNPSLKSRISITRDTSKNQFFLQLNSVTTDDTATYYCARGGTGFPYWGTGTNVTVSA-----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1kcv_H|structure|full
|
| 6 |
+
QVTLSQSGPGLVKPSQSLSLTCTVTSYSITSDYAWNWIRQFAGQSLEWMGYISYSGSTSYNPSLKSRISITRDTSKNQFFLQLNSVTTDDTATYYCARGGTGFPYWGTGTNVTVSAASTTAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWPSASVTCLVAHPKSSTAADKKIEPKD
|
sabdab_dataset/1kcv/sequence/1kcv_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1kcv_L|seqres|full
|
| 2 |
+
DIVMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELKRADAAPTSSIFPPSSEQLSSGGASVVCFLNSFYPKSIAVKWKVDGSKRANGTANSWTDQDSASSTYSMSSTLTLTKDKYERHNSYTCEATHKTSSSPVVKSFNRNEC
|
| 3 |
+
>1kcv_L|seqres|region: L
|
| 4 |
+
DIVMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1kcv_L|structure|full
|
| 6 |
+
DIVMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELKRADAAPTSSIFPPSSEQLSSGGASVVCFLNSFYPKSIAVKWKVDGSKRANGTANSWTDQDSASSTYSMSSTLTLTKDKYERHNSYTCEATHKTSSSPVVKSFNRNEC
|
sabdab_dataset/1kcv/sequence/1kcv_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1kcv_H|type: H
|
| 2 |
+
QVTLSQSGPGLVKPSQSLSLTCTVTSYSITSDYAWNWIRQFAGQSLEWMGYISYSGSTSYNPSLKSRISITRDTSKNQFFLQLNSVTTDDTATYYCARGGTGFPYWGTGTNVTVSAASTTAPSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWPSASVTCLVAHPKSSTAADKKIEPKD
|
| 3 |
+
>1kcv_L|type: L
|
| 4 |
+
DIVMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELKRADAAPTSSIFPPSSEQLSSGGASVVCFLNSFYPKSIAVKWKVDGSKRANGTANSWTDQDSASSTYSMSSTLTLTKDKYERHNSYTCEATHKTSSSPVVKSFNRNEC
|
sabdab_dataset/1kcv/structure/1kcv.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1kcv/structure/chothia/1kcv.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1mh5/abangle/1mh5.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1mh5 B A 0 -57.33 71.02 116.72 120.95 83.36 16.64
|
| 3 |
+
1mh5 H L 0 -57.03 71.21 117.04 121.19 83.41 16.64
|
sabdab_dataset/1mh5/annotation/1mh5_A_VL.ann
ADDED
|
@@ -0,0 +1,114 @@
|
|
|
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|
|
|
|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 A
|
| 8 |
+
L8 A
|
| 9 |
+
L9 P
|
| 10 |
+
L10 S
|
| 11 |
+
L11 V
|
| 12 |
+
L12 S
|
| 13 |
+
L13 V
|
| 14 |
+
L14 T
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 S
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 K
|
| 28 |
+
L28 S
|
| 29 |
+
L29 L
|
| 30 |
+
L30 L
|
| 31 |
+
L30A H
|
| 32 |
+
L30B S
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 Y
|
| 40 |
+
L35 W
|
| 41 |
+
L36 F
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 R
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 R
|
| 56 |
+
L51 M
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 L
|
| 60 |
+
L55 A
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 A
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 R
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 V
|
| 89 |
+
L84 G
|
| 90 |
+
L85 V
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 L
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 H
|
| 97 |
+
L92 L
|
| 98 |
+
L93 E
|
| 99 |
+
L94 Y
|
| 100 |
+
L95 P
|
| 101 |
+
L96 F
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 A
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 L
|
| 112 |
+
L107 K
|
| 113 |
+
L108 R
|
| 114 |
+
L109 A
|
sabdab_dataset/1mh5/annotation/1mh5_B_VH.ann
ADDED
|
@@ -0,0 +1,119 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 N
|
| 33 |
+
H33 W
|
| 34 |
+
H34 I
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 N
|
| 51 |
+
H51 I
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A P
|
| 54 |
+
H53 D
|
| 55 |
+
H54 S
|
| 56 |
+
H55 Y
|
| 57 |
+
H56 R
|
| 58 |
+
H57 T
|
| 59 |
+
H58 N
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 E
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 R
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 V
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 D
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 K
|
| 100 |
+
H96 H
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 S
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 D
|
| 105 |
+
H100A G
|
| 106 |
+
H100B V
|
| 107 |
+
H101 V
|
| 108 |
+
H102 Y
|
| 109 |
+
H103 W
|
| 110 |
+
H104 G
|
| 111 |
+
H105 Q
|
| 112 |
+
H106 G
|
| 113 |
+
H107 T
|
| 114 |
+
H108 L
|
| 115 |
+
H109 V
|
| 116 |
+
H110 T
|
| 117 |
+
H111 V
|
| 118 |
+
H112 S
|
| 119 |
+
H113 A
|
sabdab_dataset/1mh5/annotation/1mh5_H_VH.ann
ADDED
|
@@ -0,0 +1,119 @@
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 N
|
| 33 |
+
H33 W
|
| 34 |
+
H34 I
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 N
|
| 51 |
+
H51 I
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A P
|
| 54 |
+
H53 D
|
| 55 |
+
H54 S
|
| 56 |
+
H55 Y
|
| 57 |
+
H56 R
|
| 58 |
+
H57 T
|
| 59 |
+
H58 N
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 E
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 R
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 V
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 D
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 K
|
| 100 |
+
H96 H
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 S
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 D
|
| 105 |
+
H100A G
|
| 106 |
+
H100B V
|
| 107 |
+
H101 V
|
| 108 |
+
H102 Y
|
| 109 |
+
H103 W
|
| 110 |
+
H104 G
|
| 111 |
+
H105 Q
|
| 112 |
+
H106 G
|
| 113 |
+
H107 T
|
| 114 |
+
H108 L
|
| 115 |
+
H109 V
|
| 116 |
+
H110 T
|
| 117 |
+
H111 V
|
| 118 |
+
H112 S
|
| 119 |
+
H113 A
|
sabdab_dataset/1mh5/annotation/1mh5_L_VL.ann
ADDED
|
@@ -0,0 +1,114 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 A
|
| 8 |
+
L8 A
|
| 9 |
+
L9 P
|
| 10 |
+
L10 S
|
| 11 |
+
L11 V
|
| 12 |
+
L12 S
|
| 13 |
+
L13 V
|
| 14 |
+
L14 T
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 S
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 K
|
| 28 |
+
L28 S
|
| 29 |
+
L29 L
|
| 30 |
+
L30 L
|
| 31 |
+
L30A H
|
| 32 |
+
L30B S
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 Y
|
| 40 |
+
L35 W
|
| 41 |
+
L36 F
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 R
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 R
|
| 56 |
+
L51 M
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 L
|
| 60 |
+
L55 A
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 A
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 R
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 V
|
| 89 |
+
L84 G
|
| 90 |
+
L85 V
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 L
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 H
|
| 97 |
+
L92 L
|
| 98 |
+
L93 E
|
| 99 |
+
L94 Y
|
| 100 |
+
L95 P
|
| 101 |
+
L96 F
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 A
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 L
|
| 112 |
+
L107 K
|
| 113 |
+
L108 R
|
| 114 |
+
L109 A
|
sabdab_dataset/1mh5/imgt/1mh5_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ4*01 IG IGKJ IGKJ4 IGKJ4 NA True
|
| 4 |
+
V Mus_musculus IGKV2-137*01 IG IGKV IGKV2 IGKV2-137 NA True
|
sabdab_dataset/1mh5/imgt/1mh5_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2A*01 IG IGHC IGHG2A IGHG2A IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV1S61*01 IG IGHV IGHV1 IGHV1S61 NA True
|
sabdab_dataset/1mh5/imgt/1mh5_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2A*01 IG IGHC IGHG2A IGHG2A IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV1S61*01 IG IGHV IGHV1 IGHV1S61 NA True
|
sabdab_dataset/1mh5/imgt/1mh5_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ4*01 IG IGKJ IGKJ4 IGKJ4 NA True
|
| 4 |
+
V Mus_musculus IGKV2-137*01 IG IGKV IGKV2 IGKV2-137 NA True
|
sabdab_dataset/1mh5/sequence/1mh5_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mh5_A|seqres|full
|
| 2 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1mh5_A|seqres|region: L
|
| 4 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mh5_A|structure|full
|
| 6 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPP---------ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK----RHNSYTCEA-----TSPIVKSFN----
|
sabdab_dataset/1mh5/sequence/1mh5_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mh5_B|seqres|full
|
| 2 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK
|
| 3 |
+
>1mh5_B|seqres|region: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSA---------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mh5_B|structure|full
|
| 6 |
+
-VQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPV--------VTLGCLVKGYFPEPVTLTW--------VHTFPAVLQSDLYTLSSSVTV-----------------------------------------
|
sabdab_dataset/1mh5/sequence/1mh5_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mh5_H|seqres|full
|
| 2 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK
|
| 3 |
+
>1mh5_H|seqres|region: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSA---------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mh5_H|structure|full
|
| 6 |
+
-VQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAP-------SSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV---------ITCNVAHPA-----------------------
|
sabdab_dataset/1mh5/sequence/1mh5_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mh5_L|seqres|full
|
| 2 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1mh5_L|seqres|region: L
|
| 4 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mh5_L|structure|full
|
| 6 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA-----TSPIVKSFNRN--
|
sabdab_dataset/1mh5/sequence/1mh5_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mh5_A|type: L
|
| 2 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1mh5_H|type: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK
|
| 5 |
+
>1mh5_B|type: H
|
| 6 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDTSSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK
|
| 7 |
+
>1mh5_L|type: L
|
| 8 |
+
DIVMTQAAPSVSVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|