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- sabdab_dataset/1jnn/abangle/1jnn.abangle +2 -0
- sabdab_dataset/1jnn/annotation/1jnn_H_VH.ann +114 -0
- sabdab_dataset/1jnn/annotation/1jnn_L_VL.ann +109 -0
- sabdab_dataset/1jnn/imgt/1jnn_H_H.ann +4 -0
- sabdab_dataset/1jnn/imgt/1jnn_L_L.ann +4 -0
- sabdab_dataset/1jnn/sequence/1jnn_H_VH.fa +6 -0
- sabdab_dataset/1jnn/sequence/1jnn_L_VL.fa +6 -0
- sabdab_dataset/1jnn/sequence/1jnn_raw.pdb +4 -0
- sabdab_dataset/1jnn/structure/1jnn.pdb +0 -0
- sabdab_dataset/1jnn/structure/chothia/1jnn.pdb +0 -0
- sabdab_dataset/1n0x/abangle/1n0x.abangle +3 -0
- sabdab_dataset/1n0x/annotation/1n0x_H_VH.ann +127 -0
- sabdab_dataset/1n0x/annotation/1n0x_K_VH.ann +127 -0
- sabdab_dataset/1n0x/annotation/1n0x_L_VL.ann +110 -0
- sabdab_dataset/1n0x/annotation/1n0x_M_VL.ann +110 -0
- sabdab_dataset/1n0x/imgt/1n0x_H_H.ann +4 -0
- sabdab_dataset/1n0x/imgt/1n0x_K_H.ann +4 -0
- sabdab_dataset/1n0x/imgt/1n0x_L_L.ann +4 -0
- sabdab_dataset/1n0x/imgt/1n0x_M_L.ann +4 -0
- sabdab_dataset/1n0x/sequence/1n0x_H_VH.fa +6 -0
- sabdab_dataset/1n0x/sequence/1n0x_K_VH.fa +6 -0
- sabdab_dataset/1n0x/sequence/1n0x_L_VL.fa +6 -0
- sabdab_dataset/1n0x/sequence/1n0x_M_VL.fa +6 -0
- sabdab_dataset/1n0x/sequence/1n0x_raw.pdb +12 -0
- sabdab_dataset/1n0x/structure/1n0x.pdb +0 -0
- sabdab_dataset/1n0x/structure/chothia/1n0x.pdb +0 -0
- sabdab_dataset/1n4x/abangle/1n4x.abangle +3 -0
- sabdab_dataset/1n4x/annotation/1n4x_H_VH.ann +120 -0
- sabdab_dataset/1n4x/annotation/1n4x_I_VH.ann +120 -0
- sabdab_dataset/1n4x/annotation/1n4x_L_VL.ann +112 -0
- sabdab_dataset/1n4x/annotation/1n4x_M_VL.ann +112 -0
- sabdab_dataset/1n4x/imgt/1n4x_H_H.ann +3 -0
- sabdab_dataset/1n4x/imgt/1n4x_I_H.ann +3 -0
- sabdab_dataset/1n4x/imgt/1n4x_L_L.ann +3 -0
- sabdab_dataset/1n4x/imgt/1n4x_M_L.ann +3 -0
- sabdab_dataset/1n4x/sequence/1n4x_H_VH.fa +6 -0
- sabdab_dataset/1n4x/sequence/1n4x_I_VH.fa +6 -0
- sabdab_dataset/1n4x/sequence/1n4x_L_VL.fa +6 -0
- sabdab_dataset/1n4x/sequence/1n4x_M_VL.fa +6 -0
- sabdab_dataset/1n4x/sequence/1n4x_raw.pdb +8 -0
- sabdab_dataset/1n4x/structure/1n4x.pdb +0 -0
- sabdab_dataset/1n4x/structure/chothia/1n4x.pdb +0 -0
- sabdab_dataset/1tzh/abangle/1tzh.abangle +3 -0
- sabdab_dataset/1tzh/annotation/1tzh_A_VL.ann +109 -0
- sabdab_dataset/1tzh/annotation/1tzh_B_VH.ann +122 -0
- sabdab_dataset/1tzh/annotation/1tzh_H_VH.ann +122 -0
- sabdab_dataset/1tzh/annotation/1tzh_L_VL.ann +109 -0
- sabdab_dataset/1tzh/imgt/1tzh_A_L.ann +4 -0
- sabdab_dataset/1tzh/imgt/1tzh_B_H.ann +4 -0
- sabdab_dataset/1tzh/imgt/1tzh_H_H.ann +4 -0
sabdab_dataset/1jnn/abangle/1jnn.abangle
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pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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1jnn H L 0 -52.79 70.34 118.48 120.99 84.81 16.09
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sabdab_dataset/1jnn/annotation/1jnn_H_VH.ann
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sabdab_dataset/1jnn/annotation/1jnn_L_VL.ann
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sabdab_dataset/1jnn/imgt/1jnn_H_H.ann
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gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
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C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
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J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
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V Mus_musculus IGHV14-3*02 IG IGHV IGHV14 IGHV14-3 NA True
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sabdab_dataset/1jnn/imgt/1jnn_L_L.ann
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gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
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C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
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J Mus_musculus IGKJ2*01 IG IGKJ IGKJ2 IGKJ2 NA True
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V Mus_musculus IGKV12-41*02 IG IGKV IGKV12 IGKV12-41 NA True
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sabdab_dataset/1jnn/sequence/1jnn_H_VH.fa
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>1jnn_H|seqres|full
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EVQLQQSGAELVKPGASVRLSCSASGFNIKDTYMFWVKQRPEQGLDWIGRINPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVYYCAIEKDLPWGQGTLVTVSVAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
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>1jnn_H|seqres|region: H
|
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+
EVQLQQSGAELVKPGASVRLSCSASGFNIKDTYMFWVKQRPEQGLDWIGRINPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVYYCAIEKDLPWGQGTLVTVSV----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jnn_H|structure|full
|
| 6 |
+
EVQLQQSGAELVKPGASVRLSCSASGFNIKDTYMFWVKQRPEQGLDWIGRINPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVYYCAIEKDLPWGQGTLVTVSVAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
|
sabdab_dataset/1jnn/sequence/1jnn_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jnn_L|seqres|full
|
| 2 |
+
QIVMTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 3 |
+
>1jnn_L|seqres|region: L
|
| 4 |
+
QIVMTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRA------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jnn_L|structure|full
|
| 6 |
+
QIVMTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
sabdab_dataset/1jnn/sequence/1jnn_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jnn_H|type: H
|
| 2 |
+
EVQLQQSGAELVKPGASVRLSCSASGFNIKDTYMFWVKQRPEQGLDWIGRINPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVYYCAIEKDLPWGQGTLVTVSVAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
|
| 3 |
+
>1jnn_L|type: L
|
| 4 |
+
QIVMTQTPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPQLLVYNAKTLVDGVPLRFSGSGSGTQYSLKINSLQPEDFGNYYCHHFWNTPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
sabdab_dataset/1jnn/structure/1jnn.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1jnn/structure/chothia/1jnn.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1n0x/abangle/1n0x.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1n0x H L 0 -66.01 72.03 112.64 119.12 81.96 15.86
|
| 3 |
+
1n0x K M 0 -64.71 72.13 111.98 118.56 83.76 15.85
|
sabdab_dataset/1n0x/annotation/1n0x_H_VH.ann
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
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|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 V
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 V
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 Q
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 R
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 N
|
| 32 |
+
H32 F
|
| 33 |
+
H33 V
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 R
|
| 45 |
+
H45 F
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 M
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A P
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 N
|
| 58 |
+
H57 K
|
| 59 |
+
H58 E
|
| 60 |
+
H59 F
|
| 61 |
+
H60 S
|
| 62 |
+
H61 A
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 D
|
| 67 |
+
H66 R
|
| 68 |
+
H67 V
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 A
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 E
|
| 83 |
+
H82 L
|
| 84 |
+
H82A R
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 S
|
| 89 |
+
H85 A
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 V
|
| 100 |
+
H96 G
|
| 101 |
+
H97 P
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 S
|
| 104 |
+
H100 W
|
| 105 |
+
H100A D
|
| 106 |
+
H100B D
|
| 107 |
+
H100C S
|
| 108 |
+
H100D P
|
| 109 |
+
H100E Q
|
| 110 |
+
H100F D
|
| 111 |
+
H100G N
|
| 112 |
+
H100H Y
|
| 113 |
+
H100I Y
|
| 114 |
+
H100J M
|
| 115 |
+
H101 D
|
| 116 |
+
H102 V
|
| 117 |
+
H103 W
|
| 118 |
+
H104 G
|
| 119 |
+
H105 K
|
| 120 |
+
H106 G
|
| 121 |
+
H107 T
|
| 122 |
+
H108 T
|
| 123 |
+
H109 V
|
| 124 |
+
H110 I
|
| 125 |
+
H111 V
|
| 126 |
+
H112 S
|
| 127 |
+
H113 S
|
sabdab_dataset/1n0x/annotation/1n0x_K_VH.ann
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 V
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 V
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 Q
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 R
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 N
|
| 32 |
+
H32 F
|
| 33 |
+
H33 V
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 R
|
| 45 |
+
H45 F
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 M
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A P
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 N
|
| 58 |
+
H57 K
|
| 59 |
+
H58 E
|
| 60 |
+
H59 F
|
| 61 |
+
H60 S
|
| 62 |
+
H61 A
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 D
|
| 67 |
+
H66 R
|
| 68 |
+
H67 V
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 A
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 E
|
| 83 |
+
H82 L
|
| 84 |
+
H82A R
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 S
|
| 89 |
+
H85 A
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 V
|
| 100 |
+
H96 G
|
| 101 |
+
H97 P
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 S
|
| 104 |
+
H100 W
|
| 105 |
+
H100A D
|
| 106 |
+
H100B D
|
| 107 |
+
H100C S
|
| 108 |
+
H100D P
|
| 109 |
+
H100E Q
|
| 110 |
+
H100F D
|
| 111 |
+
H100G N
|
| 112 |
+
H100H Y
|
| 113 |
+
H100I Y
|
| 114 |
+
H100J M
|
| 115 |
+
H101 D
|
| 116 |
+
H102 V
|
| 117 |
+
H103 W
|
| 118 |
+
H104 G
|
| 119 |
+
H105 K
|
| 120 |
+
H106 G
|
| 121 |
+
H107 T
|
| 122 |
+
H108 T
|
| 123 |
+
H109 V
|
| 124 |
+
H110 I
|
| 125 |
+
H111 V
|
| 126 |
+
H112 S
|
| 127 |
+
H113 S
|
sabdab_dataset/1n0x/annotation/1n0x_L_VL.ann
ADDED
|
@@ -0,0 +1,110 @@
|
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|
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|
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|
|
|
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|
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|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 E
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 G
|
| 10 |
+
L10 T
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 L
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 R
|
| 19 |
+
L19 A
|
| 20 |
+
L20 T
|
| 21 |
+
L21 F
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 H
|
| 28 |
+
L28 S
|
| 29 |
+
L29 I
|
| 30 |
+
L30 R
|
| 31 |
+
L30A S
|
| 32 |
+
L31 R
|
| 33 |
+
L32 R
|
| 34 |
+
L33 V
|
| 35 |
+
L34 A
|
| 36 |
+
L35 W
|
| 37 |
+
L36 Y
|
| 38 |
+
L37 Q
|
| 39 |
+
L38 H
|
| 40 |
+
L39 K
|
| 41 |
+
L40 P
|
| 42 |
+
L41 G
|
| 43 |
+
L42 Q
|
| 44 |
+
L43 A
|
| 45 |
+
L44 P
|
| 46 |
+
L45 R
|
| 47 |
+
L46 L
|
| 48 |
+
L47 V
|
| 49 |
+
L48 I
|
| 50 |
+
L49 H
|
| 51 |
+
L50 G
|
| 52 |
+
L51 V
|
| 53 |
+
L52 S
|
| 54 |
+
L53 N
|
| 55 |
+
L54 R
|
| 56 |
+
L55 A
|
| 57 |
+
L56 S
|
| 58 |
+
L57 G
|
| 59 |
+
L58 I
|
| 60 |
+
L59 S
|
| 61 |
+
L60 D
|
| 62 |
+
L61 R
|
| 63 |
+
L62 F
|
| 64 |
+
L63 S
|
| 65 |
+
L64 G
|
| 66 |
+
L65 S
|
| 67 |
+
L66 G
|
| 68 |
+
L67 S
|
| 69 |
+
L68 G
|
| 70 |
+
L69 T
|
| 71 |
+
L70 D
|
| 72 |
+
L71 F
|
| 73 |
+
L72 T
|
| 74 |
+
L73 L
|
| 75 |
+
L74 T
|
| 76 |
+
L75 I
|
| 77 |
+
L76 T
|
| 78 |
+
L77 R
|
| 79 |
+
L78 V
|
| 80 |
+
L79 E
|
| 81 |
+
L80 P
|
| 82 |
+
L81 E
|
| 83 |
+
L82 D
|
| 84 |
+
L83 F
|
| 85 |
+
L84 A
|
| 86 |
+
L85 L
|
| 87 |
+
L86 Y
|
| 88 |
+
L87 Y
|
| 89 |
+
L88 C
|
| 90 |
+
L89 Q
|
| 91 |
+
L90 V
|
| 92 |
+
L91 Y
|
| 93 |
+
L92 G
|
| 94 |
+
L93 A
|
| 95 |
+
L94 S
|
| 96 |
+
L95 S
|
| 97 |
+
L96 Y
|
| 98 |
+
L97 T
|
| 99 |
+
L98 F
|
| 100 |
+
L99 G
|
| 101 |
+
L100 Q
|
| 102 |
+
L101 G
|
| 103 |
+
L102 T
|
| 104 |
+
L103 K
|
| 105 |
+
L104 L
|
| 106 |
+
L105 E
|
| 107 |
+
L106 R
|
| 108 |
+
L107 K
|
| 109 |
+
L108 R
|
| 110 |
+
L109 T
|
sabdab_dataset/1n0x/annotation/1n0x_M_VL.ann
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 E
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 G
|
| 10 |
+
L10 T
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 L
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 R
|
| 19 |
+
L19 A
|
| 20 |
+
L20 T
|
| 21 |
+
L21 F
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 H
|
| 28 |
+
L28 S
|
| 29 |
+
L29 I
|
| 30 |
+
L30 R
|
| 31 |
+
L30A S
|
| 32 |
+
L31 R
|
| 33 |
+
L32 R
|
| 34 |
+
L33 V
|
| 35 |
+
L34 A
|
| 36 |
+
L35 W
|
| 37 |
+
L36 Y
|
| 38 |
+
L37 Q
|
| 39 |
+
L38 H
|
| 40 |
+
L39 K
|
| 41 |
+
L40 P
|
| 42 |
+
L41 G
|
| 43 |
+
L42 Q
|
| 44 |
+
L43 A
|
| 45 |
+
L44 P
|
| 46 |
+
L45 R
|
| 47 |
+
L46 L
|
| 48 |
+
L47 V
|
| 49 |
+
L48 I
|
| 50 |
+
L49 H
|
| 51 |
+
L50 G
|
| 52 |
+
L51 V
|
| 53 |
+
L52 S
|
| 54 |
+
L53 N
|
| 55 |
+
L54 R
|
| 56 |
+
L55 A
|
| 57 |
+
L56 S
|
| 58 |
+
L57 G
|
| 59 |
+
L58 I
|
| 60 |
+
L59 S
|
| 61 |
+
L60 D
|
| 62 |
+
L61 R
|
| 63 |
+
L62 F
|
| 64 |
+
L63 S
|
| 65 |
+
L64 G
|
| 66 |
+
L65 S
|
| 67 |
+
L66 G
|
| 68 |
+
L67 S
|
| 69 |
+
L68 G
|
| 70 |
+
L69 T
|
| 71 |
+
L70 D
|
| 72 |
+
L71 F
|
| 73 |
+
L72 T
|
| 74 |
+
L73 L
|
| 75 |
+
L74 T
|
| 76 |
+
L75 I
|
| 77 |
+
L76 T
|
| 78 |
+
L77 R
|
| 79 |
+
L78 V
|
| 80 |
+
L79 E
|
| 81 |
+
L80 P
|
| 82 |
+
L81 E
|
| 83 |
+
L82 D
|
| 84 |
+
L83 F
|
| 85 |
+
L84 A
|
| 86 |
+
L85 L
|
| 87 |
+
L86 Y
|
| 88 |
+
L87 Y
|
| 89 |
+
L88 C
|
| 90 |
+
L89 Q
|
| 91 |
+
L90 V
|
| 92 |
+
L91 Y
|
| 93 |
+
L92 G
|
| 94 |
+
L93 A
|
| 95 |
+
L94 S
|
| 96 |
+
L95 S
|
| 97 |
+
L96 Y
|
| 98 |
+
L97 T
|
| 99 |
+
L98 F
|
| 100 |
+
L99 G
|
| 101 |
+
L100 Q
|
| 102 |
+
L101 G
|
| 103 |
+
L102 T
|
| 104 |
+
L103 K
|
| 105 |
+
L104 L
|
| 106 |
+
L105 E
|
| 107 |
+
L106 R
|
| 108 |
+
L107 K
|
| 109 |
+
L108 R
|
| 110 |
+
L109 T
|
sabdab_dataset/1n0x/imgt/1n0x_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ6*03 IG IGHJ IGHJ6 IGHJ6 NA True
|
| 4 |
+
V Homo_sapiens IGHV1-3*01 IG IGHV IGHV1 IGHV1-3 NA True
|
sabdab_dataset/1n0x/imgt/1n0x_K_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ6*03 IG IGHJ IGHJ6 IGHJ6 NA True
|
| 4 |
+
V Homo_sapiens IGHV1-3*01 IG IGHV IGHV1 IGHV1-3 NA True
|
sabdab_dataset/1n0x/imgt/1n0x_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Homo_sapiens IGKJ2*01 IG IGKJ IGKJ2 IGKJ2 NA True
|
| 4 |
+
V Homo_sapiens IGKV3-20*01 IG IGKV IGKV3 IGKV3-20 NA True
|
sabdab_dataset/1n0x/imgt/1n0x_M_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Homo_sapiens IGKJ2*01 IG IGKJ IGKJ2 IGKJ2 NA True
|
| 4 |
+
V Homo_sapiens IGKV3-20*01 IG IGKV IGKV3 IGKV3-20 NA True
|
sabdab_dataset/1n0x/sequence/1n0x_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n0x_H|seqres|full
|
| 2 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>1n0x_H|seqres|region: H
|
| 4 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1n0x_H|structure|full
|
| 6 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSS------TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK--
|
sabdab_dataset/1n0x/sequence/1n0x_K_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n0x_K|seqres|full
|
| 2 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>1n0x_K|seqres|region: H
|
| 4 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1n0x_K|structure|full
|
| 6 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPS------GTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
sabdab_dataset/1n0x/sequence/1n0x_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n0x_L|seqres|full
|
| 2 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
| 3 |
+
>1n0x_L|seqres|region: L
|
| 4 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRT---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1n0x_L|structure|full
|
| 6 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
sabdab_dataset/1n0x/sequence/1n0x_M_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n0x_M|seqres|full
|
| 2 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
| 3 |
+
>1n0x_M|seqres|region: L
|
| 4 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRT---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1n0x_M|structure|full
|
| 6 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
sabdab_dataset/1n0x/sequence/1n0x_raw.pdb
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n0x_H|type: H
|
| 2 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>1n0x_K|type: H
|
| 4 |
+
QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 5 |
+
>1n0x_M|type: L
|
| 6 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
| 7 |
+
>1n0x_L|type: L
|
| 8 |
+
EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGEC
|
| 9 |
+
>1n0x_P|type: non-ab
|
| 10 |
+
HERSYMFSDLENRCIAAEAKK
|
| 11 |
+
>1n0x_R|type: non-ab
|
| 12 |
+
HERSYMFSDLENRCIAAEAKK
|
sabdab_dataset/1n0x/structure/1n0x.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1n0x/structure/chothia/1n0x.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1n4x/abangle/1n4x.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1n4x H L 0 -65.51 76.00 110.31 122.43 77.43 15.84
|
| 3 |
+
1n4x I M 0 -70.53 73.94 107.07 121.78 72.40 15.58
|
sabdab_dataset/1n4x/annotation/1n4x_H_VH.ann
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 T
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 T
|
| 26 |
+
H26 N
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 A
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 D
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 S
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 G
|
| 44 |
+
H44 D
|
| 45 |
+
H45 L
|
| 46 |
+
H46 K
|
| 47 |
+
H47 Y
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 E
|
| 55 |
+
H54 T
|
| 56 |
+
H55 D
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 F
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 A
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 T
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 I
|
| 84 |
+
H82A N
|
| 85 |
+
H82B N
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 N
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 D
|
| 100 |
+
H96 R
|
| 101 |
+
H97 H
|
| 102 |
+
H98 D
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A E
|
| 106 |
+
H100B I
|
| 107 |
+
H100C F
|
| 108 |
+
H101 T
|
| 109 |
+
H102 Y
|
| 110 |
+
H103 W
|
| 111 |
+
H104 G
|
| 112 |
+
H105 Q
|
| 113 |
+
H106 G
|
| 114 |
+
H107 T
|
| 115 |
+
H108 T
|
| 116 |
+
H109 V
|
| 117 |
+
H110 T
|
| 118 |
+
H111 V
|
| 119 |
+
H112 S
|
| 120 |
+
H113 A
|
sabdab_dataset/1n4x/annotation/1n4x_I_VH.ann
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
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|
|
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|
|
|
|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 T
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 T
|
| 26 |
+
H26 N
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 A
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 D
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 S
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 G
|
| 44 |
+
H44 D
|
| 45 |
+
H45 L
|
| 46 |
+
H46 K
|
| 47 |
+
H47 Y
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 E
|
| 55 |
+
H54 T
|
| 56 |
+
H55 D
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 F
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 A
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 T
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 I
|
| 84 |
+
H82A N
|
| 85 |
+
H82B N
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 N
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 D
|
| 100 |
+
H96 R
|
| 101 |
+
H97 H
|
| 102 |
+
H98 D
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A E
|
| 106 |
+
H100B I
|
| 107 |
+
H100C F
|
| 108 |
+
H101 T
|
| 109 |
+
H102 Y
|
| 110 |
+
H103 W
|
| 111 |
+
H104 G
|
| 112 |
+
H105 Q
|
| 113 |
+
H106 G
|
| 114 |
+
H107 T
|
| 115 |
+
H108 T
|
| 116 |
+
H109 V
|
| 117 |
+
H110 T
|
| 118 |
+
H111 V
|
| 119 |
+
H112 S
|
| 120 |
+
H113 A
|
sabdab_dataset/1n4x/annotation/1n4x_L_VL.ann
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 T
|
| 8 |
+
L8 P
|
| 9 |
+
L9 L
|
| 10 |
+
L10 Y
|
| 11 |
+
L11 L
|
| 12 |
+
L12 P
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 Q
|
| 19 |
+
L19 A
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 T
|
| 29 |
+
L29 I
|
| 30 |
+
L30 V
|
| 31 |
+
L30A H
|
| 32 |
+
L30B N
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 E
|
| 40 |
+
L35 W
|
| 41 |
+
L36 Y
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 K
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 K
|
| 56 |
+
L51 V
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 R
|
| 60 |
+
L55 F
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 D
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 K
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 L
|
| 89 |
+
L84 G
|
| 90 |
+
L85 I
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 F
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 G
|
| 97 |
+
L92 S
|
| 98 |
+
L93 H
|
| 99 |
+
L94 F
|
| 100 |
+
L95 P
|
| 101 |
+
L96 P
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 G
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 I
|
| 112 |
+
L107 A
|
sabdab_dataset/1n4x/annotation/1n4x_M_VL.ann
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 T
|
| 8 |
+
L8 P
|
| 9 |
+
L9 L
|
| 10 |
+
L10 Y
|
| 11 |
+
L11 L
|
| 12 |
+
L12 P
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 Q
|
| 19 |
+
L19 A
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 T
|
| 29 |
+
L29 I
|
| 30 |
+
L30 V
|
| 31 |
+
L30A H
|
| 32 |
+
L30B N
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 E
|
| 40 |
+
L35 W
|
| 41 |
+
L36 Y
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 K
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 K
|
| 56 |
+
L51 V
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 R
|
| 60 |
+
L55 F
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 D
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 K
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 L
|
| 89 |
+
L84 G
|
| 90 |
+
L85 I
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 F
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 G
|
| 97 |
+
L92 S
|
| 98 |
+
L93 H
|
| 99 |
+
L94 F
|
| 100 |
+
L95 P
|
| 101 |
+
L96 P
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 G
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 I
|
| 112 |
+
L107 A
|
sabdab_dataset/1n4x/imgt/1n4x_H_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 3 |
+
V Mus_musculus IGHV9-2-1*01 IG IGHV IGHV9 IGHV9-2-1 NA True
|
sabdab_dataset/1n4x/imgt/1n4x_I_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 3 |
+
V Mus_musculus IGHV9-2-1*01 IG IGHV IGHV9 IGHV9-2-1 NA True
|
sabdab_dataset/1n4x/imgt/1n4x_L_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ1*02 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 3 |
+
V Mus_musculus IGKV1-117*01 IG IGKV IGKV1 IGKV1-117 NA True
|
sabdab_dataset/1n4x/imgt/1n4x_M_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ1*02 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 3 |
+
V Mus_musculus IGKV1-117*01 IG IGKV IGKV1 IGKV1-117 NA True
|
sabdab_dataset/1n4x/sequence/1n4x_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n4x_H|seqres|full
|
| 2 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 3 |
+
>1n4x_H|seqres|region: H
|
| 4 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 5 |
+
>1n4x_H|structure|full
|
| 6 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
sabdab_dataset/1n4x/sequence/1n4x_I_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n4x_I|seqres|full
|
| 2 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 3 |
+
>1n4x_I|seqres|region: H
|
| 4 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 5 |
+
>1n4x_I|structure|full
|
| 6 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVS-
|
sabdab_dataset/1n4x/sequence/1n4x_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n4x_L|seqres|full
|
| 2 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
| 3 |
+
>1n4x_L|seqres|region: L
|
| 4 |
+
-DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
| 5 |
+
>1n4x_L|structure|full
|
| 6 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
sabdab_dataset/1n4x/sequence/1n4x_M_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n4x_M|seqres|full
|
| 2 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
| 3 |
+
>1n4x_M|seqres|region: L
|
| 4 |
+
-DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
| 5 |
+
>1n4x_M|structure|full
|
| 6 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
sabdab_dataset/1n4x/sequence/1n4x_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1n4x_I|type: H
|
| 2 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 3 |
+
>1n4x_H|type: H
|
| 4 |
+
EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSA
|
| 5 |
+
>1n4x_M|type: L
|
| 6 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
| 7 |
+
>1n4x_L|type: L
|
| 8 |
+
MDILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIA
|
sabdab_dataset/1n4x/structure/1n4x.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1n4x/structure/chothia/1n4x.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1tzh/abangle/1tzh.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1tzh H L 0 -59.70 69.48 123.90 119.33 81.12 16.38
|
| 3 |
+
1tzh B A 0 -59.48 69.64 125.32 119.83 82.09 16.45
|
sabdab_dataset/1tzh/annotation/1tzh_A_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 A
|
| 29 |
+
L29 S
|
| 30 |
+
L30 Y
|
| 31 |
+
L31 S
|
| 32 |
+
L32 S
|
| 33 |
+
L33 V
|
| 34 |
+
L34 A
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 A
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 Y
|
| 54 |
+
L54 L
|
| 55 |
+
L55 Y
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 S
|
| 91 |
+
L91 S
|
| 92 |
+
L92 A
|
| 93 |
+
L93 S
|
| 94 |
+
L94 P
|
| 95 |
+
L96 A
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 Q
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 V
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 T
|
| 109 |
+
L110 V
|
sabdab_dataset/1tzh/annotation/1tzh_B_VH.ann
ADDED
|
@@ -0,0 +1,122 @@
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 D
|
| 29 |
+
H29 I
|
| 30 |
+
H30 Y
|
| 31 |
+
H31 D
|
| 32 |
+
H32 D
|
| 33 |
+
H33 D
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 Y
|
| 51 |
+
H51 I
|
| 52 |
+
H52 A
|
| 53 |
+
H52A P
|
| 54 |
+
H53 S
|
| 55 |
+
H54 Y
|
| 56 |
+
H55 G
|
| 57 |
+
H56 Y
|
| 58 |
+
H57 T
|
| 59 |
+
H58 D
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 A
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 S
|
| 98 |
+
H94 R
|
| 99 |
+
H95 S
|
| 100 |
+
H96 S
|
| 101 |
+
H97 D
|
| 102 |
+
H98 A
|
| 103 |
+
H99 S
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A S
|
| 106 |
+
H100B Y
|
| 107 |
+
H100C S
|
| 108 |
+
H100D A
|
| 109 |
+
H100E M
|
| 110 |
+
H101 D
|
| 111 |
+
H102 Y
|
| 112 |
+
H103 W
|
| 113 |
+
H104 G
|
| 114 |
+
H105 Q
|
| 115 |
+
H106 G
|
| 116 |
+
H107 T
|
| 117 |
+
H108 L
|
| 118 |
+
H109 V
|
| 119 |
+
H110 T
|
| 120 |
+
H111 V
|
| 121 |
+
H112 S
|
| 122 |
+
H113 S
|
sabdab_dataset/1tzh/annotation/1tzh_H_VH.ann
ADDED
|
@@ -0,0 +1,122 @@
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 D
|
| 29 |
+
H29 I
|
| 30 |
+
H30 Y
|
| 31 |
+
H31 D
|
| 32 |
+
H32 D
|
| 33 |
+
H33 D
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 Y
|
| 51 |
+
H51 I
|
| 52 |
+
H52 A
|
| 53 |
+
H52A P
|
| 54 |
+
H53 S
|
| 55 |
+
H54 Y
|
| 56 |
+
H55 G
|
| 57 |
+
H56 Y
|
| 58 |
+
H57 T
|
| 59 |
+
H58 D
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 A
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 S
|
| 98 |
+
H94 R
|
| 99 |
+
H95 S
|
| 100 |
+
H96 S
|
| 101 |
+
H97 D
|
| 102 |
+
H98 A
|
| 103 |
+
H99 S
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A S
|
| 106 |
+
H100B Y
|
| 107 |
+
H100C S
|
| 108 |
+
H100D A
|
| 109 |
+
H100E M
|
| 110 |
+
H101 D
|
| 111 |
+
H102 Y
|
| 112 |
+
H103 W
|
| 113 |
+
H104 G
|
| 114 |
+
H105 Q
|
| 115 |
+
H106 G
|
| 116 |
+
H107 T
|
| 117 |
+
H108 L
|
| 118 |
+
H109 V
|
| 119 |
+
H110 T
|
| 120 |
+
H111 V
|
| 121 |
+
H112 S
|
| 122 |
+
H113 S
|
sabdab_dataset/1tzh/annotation/1tzh_L_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
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|
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|
|
|
|
|
|
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|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 A
|
| 29 |
+
L29 S
|
| 30 |
+
L30 Y
|
| 31 |
+
L31 S
|
| 32 |
+
L32 S
|
| 33 |
+
L33 V
|
| 34 |
+
L34 A
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 A
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 Y
|
| 54 |
+
L54 L
|
| 55 |
+
L55 Y
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 S
|
| 91 |
+
L91 S
|
| 92 |
+
L92 A
|
| 93 |
+
L93 S
|
| 94 |
+
L94 P
|
| 95 |
+
L96 A
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 Q
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 V
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 T
|
| 109 |
+
L110 V
|
sabdab_dataset/1tzh/imgt/1tzh_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*03 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV12-44*01 IG IGKV IGKV12 IGKV12-44 NA True
|
sabdab_dataset/1tzh/imgt/1tzh_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV5-17*01 IG IGHV IGHV5 IGHV5-17 NA True
|
sabdab_dataset/1tzh/imgt/1tzh_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV5-17*01 IG IGHV IGHV5 IGHV5-17 NA True
|