Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- sabdab_dataset/1ai1/abangle/1ai1.abangle +2 -0
- sabdab_dataset/1ai1/annotation/1ai1_H_VH.ann +121 -0
- sabdab_dataset/1ai1/annotation/1ai1_L_VL.ann +114 -0
- sabdab_dataset/1ai1/imgt/1ai1_H_H.ann +4 -0
- sabdab_dataset/1ai1/imgt/1ai1_L_L.ann +4 -0
- sabdab_dataset/1ai1/sequence/1ai1_H_VH.fa +6 -0
- sabdab_dataset/1ai1/sequence/1ai1_L_VL.fa +6 -0
- sabdab_dataset/1ai1/sequence/1ai1_raw.pdb +6 -0
- sabdab_dataset/1ai1/structure/1ai1.pdb +0 -0
- sabdab_dataset/1ai1/structure/chothia/1ai1.pdb +0 -0
- sabdab_dataset/1bfv/abangle/1bfv.abangle +2 -0
- sabdab_dataset/1bfv/annotation/1bfv_H_VH.ann +119 -0
- sabdab_dataset/1bfv/annotation/1bfv_L_VL.ann +113 -0
- sabdab_dataset/1bfv/imgt/1bfv_H_H.ann +3 -0
- sabdab_dataset/1bfv/imgt/1bfv_L_L.ann +3 -0
- sabdab_dataset/1bfv/sequence/1bfv_H_VH.fa +6 -0
- sabdab_dataset/1bfv/sequence/1bfv_L_VL.fa +6 -0
- sabdab_dataset/1bfv/sequence/1bfv_raw.pdb +4 -0
- sabdab_dataset/1bfv/structure/1bfv.pdb +0 -0
- sabdab_dataset/1bfv/structure/chothia/1bfv.pdb +0 -0
- sabdab_dataset/1k4c/annotation/1k4c_A_VH.ann +118 -0
- sabdab_dataset/1k4c/annotation/1k4c_B_VL.ann +109 -0
- sabdab_dataset/1k4c/imgt/1k4c_A_H.ann +4 -0
- sabdab_dataset/1k4c/imgt/1k4c_B_L.ann +4 -0
- sabdab_dataset/1mce/annotation/1mce_A_VL.ann +113 -0
- sabdab_dataset/1mce/annotation/1mce_B_VL.ann +113 -0
- sabdab_dataset/1mce/imgt/1mce_A_L.ann +4 -0
- sabdab_dataset/1mce/imgt/1mce_B_L.ann +4 -0
- sabdab_dataset/1mce/sequence/1mce_A_VL.fa +6 -0
- sabdab_dataset/1mce/sequence/1mce_B_VL.fa +6 -0
- sabdab_dataset/1mce/sequence/1mce_raw.pdb +6 -0
- sabdab_dataset/1mce/structure/1mce.pdb +0 -0
- sabdab_dataset/1mce/structure/chothia/1mce.pdb +0 -0
- sabdab_dataset/1zvy/annotation/1zvy_A_VH.ann +127 -0
- sabdab_dataset/1zvy/imgt/1zvy_A_H.ann +3 -0
- sabdab_dataset/1zvy/sequence/1zvy_A_VH.fa +6 -0
- sabdab_dataset/1zvy/sequence/1zvy_raw.pdb +4 -0
- sabdab_dataset/1zvy/structure/1zvy.pdb +0 -0
- sabdab_dataset/1zvy/structure/chothia/1zvy.pdb +0 -0
- sabdab_dataset/2b2x/abangle/2b2x.abangle +3 -0
- sabdab_dataset/2b2x/annotation/2b2x_H_VH.ann +118 -0
- sabdab_dataset/2b2x/annotation/2b2x_I_VH.ann +118 -0
- sabdab_dataset/2b2x/annotation/2b2x_L_VL.ann +108 -0
- sabdab_dataset/2b2x/annotation/2b2x_M_VL.ann +108 -0
- sabdab_dataset/2b2x/imgt/2b2x_H_H.ann +4 -0
- sabdab_dataset/2b2x/imgt/2b2x_I_H.ann +4 -0
- sabdab_dataset/2b2x/imgt/2b2x_L_L.ann +4 -0
- sabdab_dataset/2b2x/imgt/2b2x_M_L.ann +4 -0
- sabdab_dataset/2b2x/sequence/2b2x_H_VH.fa +6 -0
- sabdab_dataset/2b2x/sequence/2b2x_I_VH.fa +6 -0
sabdab_dataset/1ai1/abangle/1ai1.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1ai1 H L 0 -53.61 74.02 119.97 122.85 81.84 16.55
|
sabdab_dataset/1ai1/annotation/1ai1_H_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 K
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 A
|
| 11 |
+
H11 V
|
| 12 |
+
H12 I
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 S
|
| 16 |
+
H16 Q
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 S
|
| 20 |
+
H20 L
|
| 21 |
+
H21 T
|
| 22 |
+
H22 C
|
| 23 |
+
H23 I
|
| 24 |
+
H24 V
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 S
|
| 29 |
+
H29 I
|
| 30 |
+
H30 T
|
| 31 |
+
H31 R
|
| 32 |
+
H31A T
|
| 33 |
+
H31B N
|
| 34 |
+
H32 Y
|
| 35 |
+
H33 C
|
| 36 |
+
H34 W
|
| 37 |
+
H35 H
|
| 38 |
+
H36 W
|
| 39 |
+
H37 I
|
| 40 |
+
H38 R
|
| 41 |
+
H39 Q
|
| 42 |
+
H40 A
|
| 43 |
+
H41 P
|
| 44 |
+
H42 G
|
| 45 |
+
H43 K
|
| 46 |
+
H44 G
|
| 47 |
+
H45 L
|
| 48 |
+
H46 E
|
| 49 |
+
H47 W
|
| 50 |
+
H48 M
|
| 51 |
+
H49 G
|
| 52 |
+
H50 R
|
| 53 |
+
H51 I
|
| 54 |
+
H52 C
|
| 55 |
+
H53 Y
|
| 56 |
+
H54 E
|
| 57 |
+
H55 G
|
| 58 |
+
H56 S
|
| 59 |
+
H57 I
|
| 60 |
+
H58 Y
|
| 61 |
+
H59 Y
|
| 62 |
+
H60 S
|
| 63 |
+
H61 P
|
| 64 |
+
H62 S
|
| 65 |
+
H63 I
|
| 66 |
+
H64 K
|
| 67 |
+
H65 S
|
| 68 |
+
H66 R
|
| 69 |
+
H67 S
|
| 70 |
+
H68 T
|
| 71 |
+
H69 I
|
| 72 |
+
H70 S
|
| 73 |
+
H71 R
|
| 74 |
+
H72 D
|
| 75 |
+
H73 T
|
| 76 |
+
H74 S
|
| 77 |
+
H75 L
|
| 78 |
+
H76 N
|
| 79 |
+
H77 K
|
| 80 |
+
H78 F
|
| 81 |
+
H79 F
|
| 82 |
+
H80 I
|
| 83 |
+
H81 Q
|
| 84 |
+
H82 L
|
| 85 |
+
H82A I
|
| 86 |
+
H82B S
|
| 87 |
+
H82C V
|
| 88 |
+
H83 T
|
| 89 |
+
H84 N
|
| 90 |
+
H85 E
|
| 91 |
+
H86 D
|
| 92 |
+
H87 T
|
| 93 |
+
H88 A
|
| 94 |
+
H89 M
|
| 95 |
+
H90 Y
|
| 96 |
+
H91 Y
|
| 97 |
+
H92 C
|
| 98 |
+
H93 S
|
| 99 |
+
H94 R
|
| 100 |
+
H95 E
|
| 101 |
+
H96 N
|
| 102 |
+
H97 H
|
| 103 |
+
H98 M
|
| 104 |
+
H99 Y
|
| 105 |
+
H100 E
|
| 106 |
+
H100A T
|
| 107 |
+
H100B Y
|
| 108 |
+
H100C F
|
| 109 |
+
H101 D
|
| 110 |
+
H102 V
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 Q
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 T
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 S
|
| 121 |
+
H113 S
|
sabdab_dataset/1ai1/annotation/1ai1_L_VL.ann
ADDED
|
@@ -0,0 +1,114 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 V
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 Q
|
| 18 |
+
L18 R
|
| 19 |
+
L19 A
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 E
|
| 28 |
+
L28 S
|
| 29 |
+
L29 V
|
| 30 |
+
L30 D
|
| 31 |
+
L30A S
|
| 32 |
+
L30B Y
|
| 33 |
+
L30C G
|
| 34 |
+
L30D K
|
| 35 |
+
L31 S
|
| 36 |
+
L32 F
|
| 37 |
+
L33 M
|
| 38 |
+
L34 H
|
| 39 |
+
L35 W
|
| 40 |
+
L36 Y
|
| 41 |
+
L37 Q
|
| 42 |
+
L38 Q
|
| 43 |
+
L39 K
|
| 44 |
+
L40 P
|
| 45 |
+
L41 G
|
| 46 |
+
L42 Q
|
| 47 |
+
L43 P
|
| 48 |
+
L44 P
|
| 49 |
+
L45 K
|
| 50 |
+
L46 V
|
| 51 |
+
L47 L
|
| 52 |
+
L48 I
|
| 53 |
+
L49 Y
|
| 54 |
+
L50 I
|
| 55 |
+
L51 A
|
| 56 |
+
L52 S
|
| 57 |
+
L53 N
|
| 58 |
+
L54 L
|
| 59 |
+
L55 E
|
| 60 |
+
L56 S
|
| 61 |
+
L57 G
|
| 62 |
+
L58 V
|
| 63 |
+
L59 P
|
| 64 |
+
L60 A
|
| 65 |
+
L61 R
|
| 66 |
+
L62 F
|
| 67 |
+
L63 S
|
| 68 |
+
L64 G
|
| 69 |
+
L65 S
|
| 70 |
+
L66 G
|
| 71 |
+
L67 S
|
| 72 |
+
L68 R
|
| 73 |
+
L69 T
|
| 74 |
+
L70 D
|
| 75 |
+
L71 F
|
| 76 |
+
L72 T
|
| 77 |
+
L73 L
|
| 78 |
+
L74 T
|
| 79 |
+
L75 I
|
| 80 |
+
L76 D
|
| 81 |
+
L77 P
|
| 82 |
+
L78 V
|
| 83 |
+
L79 E
|
| 84 |
+
L80 A
|
| 85 |
+
L81 D
|
| 86 |
+
L82 D
|
| 87 |
+
L83 A
|
| 88 |
+
L84 A
|
| 89 |
+
L85 T
|
| 90 |
+
L86 Y
|
| 91 |
+
L87 Y
|
| 92 |
+
L88 C
|
| 93 |
+
L89 Q
|
| 94 |
+
L90 Q
|
| 95 |
+
L91 N
|
| 96 |
+
L92 N
|
| 97 |
+
L93 E
|
| 98 |
+
L94 D
|
| 99 |
+
L95 P
|
| 100 |
+
L96 P
|
| 101 |
+
L97 T
|
| 102 |
+
L98 F
|
| 103 |
+
L99 G
|
| 104 |
+
L100 A
|
| 105 |
+
L101 G
|
| 106 |
+
L102 T
|
| 107 |
+
L103 K
|
| 108 |
+
L104 L
|
| 109 |
+
L105 E
|
| 110 |
+
L106 M
|
| 111 |
+
L107 R
|
| 112 |
+
L108 R
|
| 113 |
+
L109 A
|
| 114 |
+
L110 D
|
sabdab_dataset/1ai1/imgt/1ai1_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV12-1-1*01 IG IGHV IGHV12 IGHV12-1-1 NA True
|
sabdab_dataset/1ai1/imgt/1ai1_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*02 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV3-10*01 IG IGKV IGKV3 IGKV3-10 NA True
|
sabdab_dataset/1ai1/sequence/1ai1_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ai1_H|seqres|full
|
| 2 |
+
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
|
| 3 |
+
>1ai1_H|seqres|region: H
|
| 4 |
+
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSS----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ai1_H|structure|full
|
| 6 |
+
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
|
sabdab_dataset/1ai1/sequence/1ai1_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ai1_L|seqres|full
|
| 2 |
+
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 3 |
+
>1ai1_L|seqres|region: L
|
| 4 |
+
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRAD-----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ai1_L|structure|full
|
| 6 |
+
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
sabdab_dataset/1ai1/sequence/1ai1_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ai1_H|type: H
|
| 2 |
+
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
|
| 3 |
+
>1ai1_L|type: L
|
| 4 |
+
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
|
| 5 |
+
>1ai1_P|type: non-ab
|
| 6 |
+
YNKRKRIHIGPGRAFYTTKNIIGC
|
sabdab_dataset/1ai1/structure/1ai1.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1ai1/structure/chothia/1ai1.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1bfv/abangle/1bfv.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1bfv H L 0 -66.89 71.38 115.44 122.09 80.61 16.18
|
sabdab_dataset/1bfv/annotation/1bfv_H_VH.ann
ADDED
|
@@ -0,0 +1,119 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 N
|
| 14 |
+
H14 L
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 M
|
| 19 |
+
H19 T
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 V
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 N
|
| 31 |
+
H31 T
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 M
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 T
|
| 41 |
+
H41 P
|
| 42 |
+
H42 E
|
| 43 |
+
H43 K
|
| 44 |
+
H44 T
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 L
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 A
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A S
|
| 54 |
+
H53 D
|
| 55 |
+
H54 G
|
| 56 |
+
H55 E
|
| 57 |
+
H56 P
|
| 58 |
+
H57 I
|
| 59 |
+
H58 Y
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 P
|
| 62 |
+
H61 D
|
| 63 |
+
H62 T
|
| 64 |
+
H63 L
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 V
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 R
|
| 73 |
+
H72 D
|
| 74 |
+
H73 N
|
| 75 |
+
H74 A
|
| 76 |
+
H75 K
|
| 77 |
+
H76 K
|
| 78 |
+
H77 T
|
| 79 |
+
H78 L
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 N
|
| 88 |
+
H84 F
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 L
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 L
|
| 100 |
+
H96 N
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 A
|
| 103 |
+
H99 V
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A G
|
| 106 |
+
H100B M
|
| 107 |
+
H101 D
|
| 108 |
+
H102 Y
|
| 109 |
+
H103 W
|
| 110 |
+
H104 G
|
| 111 |
+
H105 Q
|
| 112 |
+
H106 G
|
| 113 |
+
H107 T
|
| 114 |
+
H108 T
|
| 115 |
+
H109 V
|
| 116 |
+
H110 T
|
| 117 |
+
H111 V
|
| 118 |
+
H112 S
|
| 119 |
+
H113 S
|
sabdab_dataset/1bfv/annotation/1bfv_L_VL.ann
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 E
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 P
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 P
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 Q
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 S
|
| 29 |
+
L29 L
|
| 30 |
+
L30 V
|
| 31 |
+
L30A S
|
| 32 |
+
L30B N
|
| 33 |
+
L30C N
|
| 34 |
+
L30D R
|
| 35 |
+
L30E R
|
| 36 |
+
L31 N
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 H
|
| 40 |
+
L35 W
|
| 41 |
+
L36 Y
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 K
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 K
|
| 51 |
+
L46 L
|
| 52 |
+
L47 V
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 K
|
| 56 |
+
L51 V
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 R
|
| 60 |
+
L55 F
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 D
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 K
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 A
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 L
|
| 89 |
+
L84 G
|
| 90 |
+
L85 L
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 F
|
| 93 |
+
L88 C
|
| 94 |
+
L89 S
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 S
|
| 97 |
+
L92 S
|
| 98 |
+
L93 H
|
| 99 |
+
L94 V
|
| 100 |
+
L95 P
|
| 101 |
+
L96 L
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 S
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 I
|
| 112 |
+
L107 K
|
| 113 |
+
L108 R
|
sabdab_dataset/1bfv/imgt/1bfv_H_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 3 |
+
V Mus_musculus IGHV5-6-2*01 IG IGHV IGHV5 IGHV5-6-2 NA True
|
sabdab_dataset/1bfv/imgt/1bfv_L_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ4*01 IG IGKJ IGKJ4 IGKJ4 NA True
|
| 3 |
+
V Mus_musculus IGKV1-110*01 IG IGKV IGKV1 IGKV1-110 NA True
|
sabdab_dataset/1bfv/sequence/1bfv_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1bfv_H|seqres|full
|
| 2 |
+
QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLYLQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS
|
| 3 |
+
>1bfv_H|seqres|region: H
|
| 4 |
+
QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLYLQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS
|
| 5 |
+
>1bfv_H|structure|full
|
| 6 |
+
QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLYLQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS
|
sabdab_dataset/1bfv/sequence/1bfv_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1bfv_L|seqres|full
|
| 2 |
+
DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR
|
| 3 |
+
>1bfv_L|seqres|region: L
|
| 4 |
+
DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR
|
| 5 |
+
>1bfv_L|structure|full
|
| 6 |
+
DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR
|
sabdab_dataset/1bfv/sequence/1bfv_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1bfv_H|type: H
|
| 2 |
+
QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLYLQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS
|
| 3 |
+
>1bfv_L|type: L
|
| 4 |
+
DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR
|
sabdab_dataset/1bfv/structure/1bfv.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1bfv/structure/chothia/1bfv.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1k4c/annotation/1k4c_A_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 D
|
| 33 |
+
H33 W
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 H
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 E
|
| 51 |
+
H51 I
|
| 52 |
+
H52 I
|
| 53 |
+
H52A P
|
| 54 |
+
H53 S
|
| 55 |
+
H54 Y
|
| 56 |
+
H55 G
|
| 57 |
+
H56 R
|
| 58 |
+
H57 A
|
| 59 |
+
H58 N
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 E
|
| 63 |
+
H62 K
|
| 64 |
+
H63 I
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 K
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 E
|
| 100 |
+
H96 R
|
| 101 |
+
H97 G
|
| 102 |
+
H98 D
|
| 103 |
+
H99 G
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A F
|
| 106 |
+
H101 A
|
| 107 |
+
H102 V
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 A
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 T
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/1k4c/annotation/1k4c_B_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 I
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 F
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 S
|
| 29 |
+
L29 I
|
| 30 |
+
L30 G
|
| 31 |
+
L31 T
|
| 32 |
+
L32 D
|
| 33 |
+
L33 I
|
| 34 |
+
L34 H
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 R
|
| 40 |
+
L40 T
|
| 41 |
+
L41 N
|
| 42 |
+
L42 G
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 R
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 K
|
| 50 |
+
L50 Y
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 E
|
| 54 |
+
L54 S
|
| 55 |
+
L55 I
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 I
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 S
|
| 75 |
+
L75 I
|
| 76 |
+
L76 N
|
| 77 |
+
L77 S
|
| 78 |
+
L78 V
|
| 79 |
+
L79 E
|
| 80 |
+
L80 S
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 I
|
| 84 |
+
L84 A
|
| 85 |
+
L85 N
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 S
|
| 92 |
+
L92 N
|
| 93 |
+
L93 R
|
| 94 |
+
L94 W
|
| 95 |
+
L95 P
|
| 96 |
+
L96 F
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 S
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/1k4c/imgt/1k4c_A_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV1S81*02 IG IGHV IGHV1 IGHV1S81 NA True
|
sabdab_dataset/1k4c/imgt/1k4c_B_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ4*01 IG IGKJ IGKJ4 IGKJ4 NA True
|
| 4 |
+
V Mus_musculus IGKV5-48*01 IG IGKV IGKV5 IGKV5-48 NA True
|
sabdab_dataset/1mce/annotation/1mce_A_VL.ann
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 P
|
| 2 |
+
L2 S
|
| 3 |
+
L3 A
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 P
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L11 A
|
| 11 |
+
L12 S
|
| 12 |
+
L13 G
|
| 13 |
+
L14 S
|
| 14 |
+
L15 L
|
| 15 |
+
L16 G
|
| 16 |
+
L17 Q
|
| 17 |
+
L18 S
|
| 18 |
+
L19 V
|
| 19 |
+
L20 T
|
| 20 |
+
L21 I
|
| 21 |
+
L22 S
|
| 22 |
+
L23 C
|
| 23 |
+
L24 T
|
| 24 |
+
L25 G
|
| 25 |
+
L26 T
|
| 26 |
+
L27 S
|
| 27 |
+
L28 S
|
| 28 |
+
L29 D
|
| 29 |
+
L30 V
|
| 30 |
+
L30A G
|
| 31 |
+
L30B G
|
| 32 |
+
L30C Y
|
| 33 |
+
L31 N
|
| 34 |
+
L32 Y
|
| 35 |
+
L33 V
|
| 36 |
+
L34 S
|
| 37 |
+
L35 W
|
| 38 |
+
L36 Y
|
| 39 |
+
L37 Q
|
| 40 |
+
L38 Q
|
| 41 |
+
L39 H
|
| 42 |
+
L40 A
|
| 43 |
+
L41 G
|
| 44 |
+
L42 K
|
| 45 |
+
L43 A
|
| 46 |
+
L44 P
|
| 47 |
+
L45 K
|
| 48 |
+
L46 V
|
| 49 |
+
L47 I
|
| 50 |
+
L48 I
|
| 51 |
+
L49 Y
|
| 52 |
+
L50 E
|
| 53 |
+
L51 V
|
| 54 |
+
L52 N
|
| 55 |
+
L53 K
|
| 56 |
+
L54 R
|
| 57 |
+
L55 P
|
| 58 |
+
L56 S
|
| 59 |
+
L57 G
|
| 60 |
+
L58 V
|
| 61 |
+
L59 P
|
| 62 |
+
L60 D
|
| 63 |
+
L61 R
|
| 64 |
+
L62 F
|
| 65 |
+
L63 S
|
| 66 |
+
L64 G
|
| 67 |
+
L65 S
|
| 68 |
+
L66 K
|
| 69 |
+
L67 S
|
| 70 |
+
L68 G
|
| 71 |
+
L69 N
|
| 72 |
+
L70 T
|
| 73 |
+
L71 A
|
| 74 |
+
L72 S
|
| 75 |
+
L73 L
|
| 76 |
+
L74 T
|
| 77 |
+
L75 V
|
| 78 |
+
L76 S
|
| 79 |
+
L77 G
|
| 80 |
+
L78 L
|
| 81 |
+
L79 Q
|
| 82 |
+
L80 A
|
| 83 |
+
L81 E
|
| 84 |
+
L82 D
|
| 85 |
+
L83 E
|
| 86 |
+
L84 A
|
| 87 |
+
L85 D
|
| 88 |
+
L86 Y
|
| 89 |
+
L87 Y
|
| 90 |
+
L88 C
|
| 91 |
+
L89 S
|
| 92 |
+
L90 S
|
| 93 |
+
L91 Y
|
| 94 |
+
L92 E
|
| 95 |
+
L93 G
|
| 96 |
+
L94 S
|
| 97 |
+
L95 D
|
| 98 |
+
L95A N
|
| 99 |
+
L96 F
|
| 100 |
+
L97 V
|
| 101 |
+
L98 F
|
| 102 |
+
L99 G
|
| 103 |
+
L100 T
|
| 104 |
+
L101 G
|
| 105 |
+
L102 T
|
| 106 |
+
L103 K
|
| 107 |
+
L104 V
|
| 108 |
+
L105 T
|
| 109 |
+
L106 V
|
| 110 |
+
L106A L
|
| 111 |
+
L107 G
|
| 112 |
+
L108 Q
|
| 113 |
+
L109 P
|
sabdab_dataset/1mce/annotation/1mce_B_VL.ann
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 P
|
| 2 |
+
L2 S
|
| 3 |
+
L3 A
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 P
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L11 A
|
| 11 |
+
L12 S
|
| 12 |
+
L13 G
|
| 13 |
+
L14 S
|
| 14 |
+
L15 L
|
| 15 |
+
L16 G
|
| 16 |
+
L17 Q
|
| 17 |
+
L18 S
|
| 18 |
+
L19 V
|
| 19 |
+
L20 T
|
| 20 |
+
L21 I
|
| 21 |
+
L22 S
|
| 22 |
+
L23 C
|
| 23 |
+
L24 T
|
| 24 |
+
L25 G
|
| 25 |
+
L26 T
|
| 26 |
+
L27 S
|
| 27 |
+
L28 S
|
| 28 |
+
L29 D
|
| 29 |
+
L30 V
|
| 30 |
+
L30A G
|
| 31 |
+
L30B G
|
| 32 |
+
L30C Y
|
| 33 |
+
L31 N
|
| 34 |
+
L32 Y
|
| 35 |
+
L33 V
|
| 36 |
+
L34 S
|
| 37 |
+
L35 W
|
| 38 |
+
L36 Y
|
| 39 |
+
L37 Q
|
| 40 |
+
L38 Q
|
| 41 |
+
L39 H
|
| 42 |
+
L40 A
|
| 43 |
+
L41 G
|
| 44 |
+
L42 K
|
| 45 |
+
L43 A
|
| 46 |
+
L44 P
|
| 47 |
+
L45 K
|
| 48 |
+
L46 V
|
| 49 |
+
L47 I
|
| 50 |
+
L48 I
|
| 51 |
+
L49 Y
|
| 52 |
+
L50 E
|
| 53 |
+
L51 V
|
| 54 |
+
L52 N
|
| 55 |
+
L53 K
|
| 56 |
+
L54 R
|
| 57 |
+
L55 P
|
| 58 |
+
L56 S
|
| 59 |
+
L57 G
|
| 60 |
+
L58 V
|
| 61 |
+
L59 P
|
| 62 |
+
L60 D
|
| 63 |
+
L61 R
|
| 64 |
+
L62 F
|
| 65 |
+
L63 S
|
| 66 |
+
L64 G
|
| 67 |
+
L65 S
|
| 68 |
+
L66 K
|
| 69 |
+
L67 S
|
| 70 |
+
L68 G
|
| 71 |
+
L69 N
|
| 72 |
+
L70 T
|
| 73 |
+
L71 A
|
| 74 |
+
L72 S
|
| 75 |
+
L73 L
|
| 76 |
+
L74 T
|
| 77 |
+
L75 V
|
| 78 |
+
L76 S
|
| 79 |
+
L77 G
|
| 80 |
+
L78 L
|
| 81 |
+
L79 Q
|
| 82 |
+
L80 A
|
| 83 |
+
L81 E
|
| 84 |
+
L82 D
|
| 85 |
+
L83 E
|
| 86 |
+
L84 A
|
| 87 |
+
L85 D
|
| 88 |
+
L86 Y
|
| 89 |
+
L87 Y
|
| 90 |
+
L88 C
|
| 91 |
+
L89 S
|
| 92 |
+
L90 S
|
| 93 |
+
L91 Y
|
| 94 |
+
L92 E
|
| 95 |
+
L93 G
|
| 96 |
+
L94 S
|
| 97 |
+
L95 D
|
| 98 |
+
L95A N
|
| 99 |
+
L96 F
|
| 100 |
+
L97 V
|
| 101 |
+
L98 F
|
| 102 |
+
L99 G
|
| 103 |
+
L100 T
|
| 104 |
+
L101 G
|
| 105 |
+
L102 T
|
| 106 |
+
L103 K
|
| 107 |
+
L104 V
|
| 108 |
+
L105 T
|
| 109 |
+
L106 V
|
| 110 |
+
L106A L
|
| 111 |
+
L107 G
|
| 112 |
+
L108 Q
|
| 113 |
+
L109 P
|
sabdab_dataset/1mce/imgt/1mce_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGLC1*02 IG IGLC IGLC1 IGLC1 NA True
|
| 3 |
+
J Homo_sapiens IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
|
| 4 |
+
V Homo_sapiens IGLV2-8*01 IG IGLV IGLV2 IGLV2-8 NA True
|
sabdab_dataset/1mce/imgt/1mce_B_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGLC1*02 IG IGLC IGLC1 IGLC1 NA True
|
| 3 |
+
J Homo_sapiens IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
|
| 4 |
+
V Homo_sapiens IGLV2-8*01 IG IGLV IGLV2 IGLV2-8 NA True
|
sabdab_dataset/1mce/sequence/1mce_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mce_A|seqres|full
|
| 2 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
| 3 |
+
>1mce_A|seqres|region: L
|
| 4 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQP-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mce_A|structure|full
|
| 6 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
sabdab_dataset/1mce/sequence/1mce_B_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mce_B|seqres|full
|
| 2 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
| 3 |
+
>1mce_B|seqres|region: L
|
| 4 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQP-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1mce_B|structure|full
|
| 6 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
sabdab_dataset/1mce/sequence/1mce_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1mce_A|type: L
|
| 2 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
| 3 |
+
>1mce_P|type: non-ab
|
| 4 |
+
XQFHPX
|
| 5 |
+
>1mce_B|type: L
|
| 6 |
+
PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
sabdab_dataset/1mce/structure/1mce.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1mce/structure/chothia/1mce.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1zvy/annotation/1zvy_A_VH.ann
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 D
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 S
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 A
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 S
|
| 28 |
+
H28 T
|
| 29 |
+
H29 D
|
| 30 |
+
H30 S
|
| 31 |
+
H31 I
|
| 32 |
+
H32 E
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 M
|
| 35 |
+
H35 T
|
| 36 |
+
H36 W
|
| 37 |
+
H37 F
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 A
|
| 45 |
+
H45 R
|
| 46 |
+
H46 E
|
| 47 |
+
H47 G
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 A
|
| 51 |
+
H51 L
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A T
|
| 54 |
+
H53 H
|
| 55 |
+
H54 T
|
| 56 |
+
H55 G
|
| 57 |
+
H56 N
|
| 58 |
+
H57 T
|
| 59 |
+
H58 Y
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 T
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 Q
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 A
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 M
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 R
|
| 83 |
+
H82 M
|
| 84 |
+
H82A D
|
| 85 |
+
H82B S
|
| 86 |
+
H82C V
|
| 87 |
+
H83 K
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 I
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 T
|
| 96 |
+
H92 C
|
| 97 |
+
H93 G
|
| 98 |
+
H94 A
|
| 99 |
+
H95 T
|
| 100 |
+
H96 R
|
| 101 |
+
H97 K
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 V
|
| 104 |
+
H100 P
|
| 105 |
+
H100A V
|
| 106 |
+
H100B R
|
| 107 |
+
H100C F
|
| 108 |
+
H100D A
|
| 109 |
+
H100E L
|
| 110 |
+
H100F D
|
| 111 |
+
H100G Q
|
| 112 |
+
H100H S
|
| 113 |
+
H100I S
|
| 114 |
+
H100J Y
|
| 115 |
+
H101 D
|
| 116 |
+
H102 Y
|
| 117 |
+
H103 W
|
| 118 |
+
H104 G
|
| 119 |
+
H105 Q
|
| 120 |
+
H106 G
|
| 121 |
+
H107 T
|
| 122 |
+
H108 Q
|
| 123 |
+
H109 V
|
| 124 |
+
H110 T
|
| 125 |
+
H111 V
|
| 126 |
+
H112 S
|
| 127 |
+
H113 S
|
sabdab_dataset/1zvy/imgt/1zvy_A_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Lama_glama IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 3 |
+
V Camelus_dromedarius IGHV1S45*01 IG IGHV IGHV1 IGHV1S45 NA True
|
sabdab_dataset/1zvy/sequence/1zvy_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1zvy_A|seqres|full
|
| 2 |
+
DVQLVESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQGTQVTVSSRGRHHHHHH
|
| 3 |
+
>1zvy_A|seqres|region: H
|
| 4 |
+
DVQLVESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQGTQVTVSS---------
|
| 5 |
+
>1zvy_A|structure|full
|
| 6 |
+
DVQLVESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQGTQVTV-----------
|
sabdab_dataset/1zvy/sequence/1zvy_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1zvy_A|type: H
|
| 2 |
+
DVQLVESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQGTQVTVSSRGRHHHHHH
|
| 3 |
+
>1zvy_B|type: non-ab
|
| 4 |
+
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
|
sabdab_dataset/1zvy/structure/1zvy.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1zvy/structure/chothia/1zvy.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2b2x/abangle/2b2x.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
2b2x I M 0 -54.64 73.19 117.34 117.74 86.41 16.18
|
| 3 |
+
2b2x H L 0 -54.97 73.21 117.45 117.33 86.44 16.20
|
sabdab_dataset/2b2x/annotation/2b2x_H_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 R
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 T
|
| 34 |
+
H34 M
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 V
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H53 G
|
| 54 |
+
H54 G
|
| 55 |
+
H55 G
|
| 56 |
+
H56 H
|
| 57 |
+
H57 T
|
| 58 |
+
H58 Y
|
| 59 |
+
H59 Y
|
| 60 |
+
H60 L
|
| 61 |
+
H61 D
|
| 62 |
+
H62 S
|
| 63 |
+
H63 V
|
| 64 |
+
H64 E
|
| 65 |
+
H65 G
|
| 66 |
+
H66 R
|
| 67 |
+
H67 F
|
| 68 |
+
H68 T
|
| 69 |
+
H69 I
|
| 70 |
+
H70 S
|
| 71 |
+
H71 R
|
| 72 |
+
H72 D
|
| 73 |
+
H73 N
|
| 74 |
+
H74 S
|
| 75 |
+
H75 K
|
| 76 |
+
H76 N
|
| 77 |
+
H77 T
|
| 78 |
+
H78 L
|
| 79 |
+
H79 Y
|
| 80 |
+
H80 L
|
| 81 |
+
H81 Q
|
| 82 |
+
H82 M
|
| 83 |
+
H82A N
|
| 84 |
+
H82B S
|
| 85 |
+
H82C L
|
| 86 |
+
H83 R
|
| 87 |
+
H84 A
|
| 88 |
+
H85 E
|
| 89 |
+
H86 D
|
| 90 |
+
H87 T
|
| 91 |
+
H88 A
|
| 92 |
+
H89 V
|
| 93 |
+
H90 Y
|
| 94 |
+
H91 Y
|
| 95 |
+
H92 C
|
| 96 |
+
H93 T
|
| 97 |
+
H94 R
|
| 98 |
+
H95 G
|
| 99 |
+
H96 F
|
| 100 |
+
H97 G
|
| 101 |
+
H98 D
|
| 102 |
+
H99 G
|
| 103 |
+
H100 G
|
| 104 |
+
H100A Y
|
| 105 |
+
H100B F
|
| 106 |
+
H101 D
|
| 107 |
+
H102 V
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 Q
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 L
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/2b2x/annotation/2b2x_I_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 R
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 T
|
| 34 |
+
H34 M
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 V
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H53 G
|
| 54 |
+
H54 G
|
| 55 |
+
H55 G
|
| 56 |
+
H56 H
|
| 57 |
+
H57 T
|
| 58 |
+
H58 Y
|
| 59 |
+
H59 Y
|
| 60 |
+
H60 L
|
| 61 |
+
H61 D
|
| 62 |
+
H62 S
|
| 63 |
+
H63 V
|
| 64 |
+
H64 E
|
| 65 |
+
H65 G
|
| 66 |
+
H66 R
|
| 67 |
+
H67 F
|
| 68 |
+
H68 T
|
| 69 |
+
H69 I
|
| 70 |
+
H70 S
|
| 71 |
+
H71 R
|
| 72 |
+
H72 D
|
| 73 |
+
H73 N
|
| 74 |
+
H74 S
|
| 75 |
+
H75 K
|
| 76 |
+
H76 N
|
| 77 |
+
H77 T
|
| 78 |
+
H78 L
|
| 79 |
+
H79 Y
|
| 80 |
+
H80 L
|
| 81 |
+
H81 Q
|
| 82 |
+
H82 M
|
| 83 |
+
H82A N
|
| 84 |
+
H82B S
|
| 85 |
+
H82C L
|
| 86 |
+
H83 R
|
| 87 |
+
H84 A
|
| 88 |
+
H85 E
|
| 89 |
+
H86 D
|
| 90 |
+
H87 T
|
| 91 |
+
H88 A
|
| 92 |
+
H89 V
|
| 93 |
+
H90 Y
|
| 94 |
+
H91 Y
|
| 95 |
+
H92 C
|
| 96 |
+
H93 T
|
| 97 |
+
H94 R
|
| 98 |
+
H95 G
|
| 99 |
+
H96 F
|
| 100 |
+
H97 G
|
| 101 |
+
H98 D
|
| 102 |
+
H99 G
|
| 103 |
+
H100 G
|
| 104 |
+
H100A Y
|
| 105 |
+
H100B F
|
| 106 |
+
H101 D
|
| 107 |
+
H102 V
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 Q
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 L
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/2b2x/annotation/2b2x_L_VL.ann
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 Q
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 S
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 S
|
| 28 |
+
L28 Q
|
| 29 |
+
L29 V
|
| 30 |
+
L30 N
|
| 31 |
+
L32 H
|
| 32 |
+
L33 M
|
| 33 |
+
L34 F
|
| 34 |
+
L35 W
|
| 35 |
+
L36 Y
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 K
|
| 42 |
+
L43 A
|
| 43 |
+
L44 P
|
| 44 |
+
L45 K
|
| 45 |
+
L46 P
|
| 46 |
+
L47 W
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 L
|
| 50 |
+
L51 T
|
| 51 |
+
L52 S
|
| 52 |
+
L53 Y
|
| 53 |
+
L54 L
|
| 54 |
+
L55 A
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 V
|
| 58 |
+
L59 P
|
| 59 |
+
L60 S
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 S
|
| 65 |
+
L66 G
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 T
|
| 69 |
+
L70 D
|
| 70 |
+
L71 Y
|
| 71 |
+
L72 T
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 S
|
| 77 |
+
L78 L
|
| 78 |
+
L79 Q
|
| 79 |
+
L80 P
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 F
|
| 83 |
+
L84 A
|
| 84 |
+
L85 T
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 Q
|
| 89 |
+
L90 Q
|
| 90 |
+
L91 W
|
| 91 |
+
L92 S
|
| 92 |
+
L93 G
|
| 93 |
+
L94 N
|
| 94 |
+
L95 P
|
| 95 |
+
L96 W
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 Q
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 V
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 A
|
sabdab_dataset/2b2x/annotation/2b2x_M_VL.ann
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 Q
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 S
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 S
|
| 28 |
+
L28 Q
|
| 29 |
+
L29 V
|
| 30 |
+
L30 N
|
| 31 |
+
L32 H
|
| 32 |
+
L33 M
|
| 33 |
+
L34 F
|
| 34 |
+
L35 W
|
| 35 |
+
L36 Y
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 K
|
| 42 |
+
L43 A
|
| 43 |
+
L44 P
|
| 44 |
+
L45 K
|
| 45 |
+
L46 P
|
| 46 |
+
L47 W
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 L
|
| 50 |
+
L51 T
|
| 51 |
+
L52 S
|
| 52 |
+
L53 Y
|
| 53 |
+
L54 L
|
| 54 |
+
L55 A
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 V
|
| 58 |
+
L59 P
|
| 59 |
+
L60 S
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 S
|
| 65 |
+
L66 G
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 T
|
| 69 |
+
L70 D
|
| 70 |
+
L71 Y
|
| 71 |
+
L72 T
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 S
|
| 77 |
+
L78 L
|
| 78 |
+
L79 Q
|
| 79 |
+
L80 P
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 F
|
| 83 |
+
L84 A
|
| 84 |
+
L85 T
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 Q
|
| 89 |
+
L90 Q
|
| 90 |
+
L91 W
|
| 91 |
+
L92 S
|
| 92 |
+
L93 G
|
| 93 |
+
L94 N
|
| 94 |
+
L95 P
|
| 95 |
+
L96 W
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 Q
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 V
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 A
|
sabdab_dataset/2b2x/imgt/2b2x_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV5-9*04 IG IGHV IGHV5 IGHV5-9 NA True
|
sabdab_dataset/2b2x/imgt/2b2x_I_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV5-9*04 IG IGHV IGHV5 IGHV5-9 NA True
|
sabdab_dataset/2b2x/imgt/2b2x_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-68*01 IG IGKV IGKV4 IGKV4-68 NA True
|
sabdab_dataset/2b2x/imgt/2b2x_M_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-68*01 IG IGKV IGKV4 IGKV4-68 NA True
|
sabdab_dataset/2b2x/sequence/2b2x_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2b2x_H|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCHHHHHH
|
| 3 |
+
>2b2x_H|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSS------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2b2x_H|structure|full
|
| 6 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSSAKTTPPSVYPLAP-------SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP---------
|
sabdab_dataset/2b2x/sequence/2b2x_I_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2b2x_I|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCHHHHHH
|
| 3 |
+
>2b2x_I|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSS------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2b2x_I|structure|full
|
| 6 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSSAKTTPPSVYPLAP-------SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP---------
|