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- sabdab_dataset/1ap2/abangle/1ap2.abangle +3 -0
- sabdab_dataset/1ap2/annotation/1ap2_A_VL.ann +113 -0
- sabdab_dataset/1ap2/annotation/1ap2_B_VH.ann +121 -0
- sabdab_dataset/1ap2/annotation/1ap2_C_VL.ann +113 -0
- sabdab_dataset/1ap2/annotation/1ap2_D_VH.ann +121 -0
- sabdab_dataset/1ap2/imgt/1ap2_A_L.ann +3 -0
- sabdab_dataset/1ap2/imgt/1ap2_B_H.ann +3 -0
- sabdab_dataset/1ap2/imgt/1ap2_C_L.ann +3 -0
- sabdab_dataset/1ap2/imgt/1ap2_D_H.ann +3 -0
- sabdab_dataset/1ap2/sequence/1ap2_A_VL.fa +6 -0
- sabdab_dataset/1ap2/sequence/1ap2_B_VH.fa +6 -0
- sabdab_dataset/1ap2/sequence/1ap2_C_VL.fa +6 -0
- sabdab_dataset/1ap2/sequence/1ap2_D_VH.fa +6 -0
- sabdab_dataset/1ap2/sequence/1ap2_raw.pdb +8 -0
- sabdab_dataset/1ap2/structure/1ap2.pdb +0 -0
- sabdab_dataset/1ap2/structure/chothia/1ap2.pdb +0 -0
- sabdab_dataset/1dql/abangle/1dql.abangle +2 -0
- sabdab_dataset/1dql/annotation/1dql_H_VH.ann +123 -0
- sabdab_dataset/1dql/annotation/1dql_L_VL.ann +106 -0
- sabdab_dataset/1dql/imgt/1dql_H_H.ann +3 -0
- sabdab_dataset/1dql/imgt/1dql_L_L.ann +3 -0
- sabdab_dataset/1dql/sequence/1dql_H_VH.fa +6 -0
- sabdab_dataset/1dql/sequence/1dql_L_VL.fa +6 -0
- sabdab_dataset/1dql/sequence/1dql_raw.pdb +4 -0
- sabdab_dataset/1dql/structure/1dql.pdb +0 -0
- sabdab_dataset/1dql/structure/chothia/1dql.pdb +0 -0
- sabdab_dataset/1jhk/abangle/1jhk.abangle +2 -0
- sabdab_dataset/1jhk/annotation/1jhk_H_VH.ann +116 -0
- sabdab_dataset/1jhk/annotation/1jhk_L_VL.ann +109 -0
- sabdab_dataset/1jhk/imgt/1jhk_H_H.ann +4 -0
- sabdab_dataset/1jhk/imgt/1jhk_L_L.ann +4 -0
- sabdab_dataset/1jhk/sequence/1jhk_H_VH.fa +6 -0
- sabdab_dataset/1jhk/sequence/1jhk_L_VL.fa +6 -0
- sabdab_dataset/1jhk/sequence/1jhk_raw.pdb +4 -0
- sabdab_dataset/1jhk/structure/1jhk.pdb +0 -0
- sabdab_dataset/1jhk/structure/chothia/1jhk.pdb +0 -0
- sabdab_dataset/1jp5/abangle/1jp5.abangle +3 -0
- sabdab_dataset/1jp5/annotation/1jp5_A_VH.ann +120 -0
- sabdab_dataset/1jp5/annotation/1jp5_A_VL.ann +115 -0
- sabdab_dataset/1jp5/annotation/1jp5_B_VH.ann +120 -0
- sabdab_dataset/1jp5/annotation/1jp5_B_VL.ann +115 -0
- sabdab_dataset/1jp5/imgt/1jp5_A_H.ann +3 -0
- sabdab_dataset/1jp5/imgt/1jp5_A_L.ann +3 -0
- sabdab_dataset/1jp5/imgt/1jp5_B_H.ann +3 -0
- sabdab_dataset/1jp5/imgt/1jp5_B_L.ann +3 -0
- sabdab_dataset/1jp5/sequence/1jp5_A_VH.fa +6 -0
- sabdab_dataset/1jp5/sequence/1jp5_A_VL.fa +6 -0
- sabdab_dataset/1jp5/sequence/1jp5_B_VH.fa +6 -0
- sabdab_dataset/1jp5/sequence/1jp5_B_VL.fa +6 -0
- sabdab_dataset/1jp5/sequence/1jp5_raw.pdb +8 -0
sabdab_dataset/1ap2/abangle/1ap2.abangle
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pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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1ap2 B A 0 -59.14 73.89 114.68 122.90 81.13 16.22
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1ap2 D C 0 -58.91 74.32 114.86 123.23 80.04 16.16
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sabdab_dataset/1ap2/annotation/1ap2_A_VL.ann
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sabdab_dataset/1ap2/annotation/1ap2_B_VH.ann
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sabdab_dataset/1ap2/annotation/1ap2_C_VL.ann
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|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 T
|
| 13 |
+
L13 V
|
| 14 |
+
L14 T
|
| 15 |
+
L15 A
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 K
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 M
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 K
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 S
|
| 29 |
+
L29 L
|
| 30 |
+
L30 L
|
| 31 |
+
L30A N
|
| 32 |
+
L30B S
|
| 33 |
+
L30C G
|
| 34 |
+
L30D N
|
| 35 |
+
L30E Q
|
| 36 |
+
L30F K
|
| 37 |
+
L31 N
|
| 38 |
+
L32 Y
|
| 39 |
+
L33 L
|
| 40 |
+
L34 T
|
| 41 |
+
L35 W
|
| 42 |
+
L36 Y
|
| 43 |
+
L37 Q
|
| 44 |
+
L38 Q
|
| 45 |
+
L39 K
|
| 46 |
+
L40 P
|
| 47 |
+
L41 G
|
| 48 |
+
L42 Q
|
| 49 |
+
L43 P
|
| 50 |
+
L44 P
|
| 51 |
+
L45 K
|
| 52 |
+
L46 L
|
| 53 |
+
L47 L
|
| 54 |
+
L48 I
|
| 55 |
+
L49 Y
|
| 56 |
+
L50 W
|
| 57 |
+
L51 A
|
| 58 |
+
L52 S
|
| 59 |
+
L53 T
|
| 60 |
+
L54 R
|
| 61 |
+
L55 E
|
| 62 |
+
L56 S
|
| 63 |
+
L57 G
|
| 64 |
+
L58 V
|
| 65 |
+
L59 P
|
| 66 |
+
L60 D
|
| 67 |
+
L61 R
|
| 68 |
+
L62 F
|
| 69 |
+
L63 T
|
| 70 |
+
L64 G
|
| 71 |
+
L65 S
|
| 72 |
+
L66 G
|
| 73 |
+
L67 S
|
| 74 |
+
L68 G
|
| 75 |
+
L69 T
|
| 76 |
+
L70 D
|
| 77 |
+
L71 F
|
| 78 |
+
L72 T
|
| 79 |
+
L73 L
|
| 80 |
+
L74 T
|
| 81 |
+
L75 I
|
| 82 |
+
L76 S
|
| 83 |
+
L77 S
|
| 84 |
+
L78 V
|
| 85 |
+
L79 Q
|
| 86 |
+
L80 A
|
| 87 |
+
L81 E
|
| 88 |
+
L82 D
|
| 89 |
+
L83 L
|
| 90 |
+
L84 A
|
| 91 |
+
L85 V
|
| 92 |
+
L86 Y
|
| 93 |
+
L87 Y
|
| 94 |
+
L88 C
|
| 95 |
+
L89 Q
|
| 96 |
+
L90 N
|
| 97 |
+
L91 D
|
| 98 |
+
L92 Y
|
| 99 |
+
L93 S
|
| 100 |
+
L94 Y
|
| 101 |
+
L95 P
|
| 102 |
+
L96 L
|
| 103 |
+
L97 T
|
| 104 |
+
L98 F
|
| 105 |
+
L99 G
|
| 106 |
+
L100 A
|
| 107 |
+
L101 G
|
| 108 |
+
L102 T
|
| 109 |
+
L103 K
|
| 110 |
+
L104 L
|
| 111 |
+
L105 E
|
| 112 |
+
L106 P
|
| 113 |
+
L107 G
|
sabdab_dataset/1ap2/annotation/1ap2_D_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 R
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 T
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 N
|
| 29 |
+
H29 I
|
| 30 |
+
H30 K
|
| 31 |
+
H31 D
|
| 32 |
+
H32 D
|
| 33 |
+
H33 F
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 E
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 R
|
| 51 |
+
H51 I
|
| 52 |
+
H52 D
|
| 53 |
+
H52A P
|
| 54 |
+
H53 A
|
| 55 |
+
H54 N
|
| 56 |
+
H55 D
|
| 57 |
+
H56 N
|
| 58 |
+
H57 T
|
| 59 |
+
H58 K
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 P
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 D
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 I
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 R
|
| 100 |
+
H96 E
|
| 101 |
+
H97 V
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 S
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A Y
|
| 106 |
+
H100B S
|
| 107 |
+
H100C P
|
| 108 |
+
H100D L
|
| 109 |
+
H101 D
|
| 110 |
+
H102 V
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 A
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 T
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 P
|
| 121 |
+
H113 S
|
sabdab_dataset/1ap2/imgt/1ap2_A_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ5*01 IG IGKJ IGKJ5 IGKJ5 NA True
|
| 3 |
+
V Mus_musculus IGKV8-19*01 IG IGKV IGKV8 IGKV8-19 NA True
|
sabdab_dataset/1ap2/imgt/1ap2_B_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 3 |
+
V Mus_musculus IGHV14-3*02 IG IGHV IGHV14 IGHV14-3 NA True
|
sabdab_dataset/1ap2/imgt/1ap2_C_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ5*01 IG IGKJ IGKJ5 IGKJ5 NA True
|
| 3 |
+
V Mus_musculus IGKV8-19*01 IG IGKV IGKV8 IGKV8-19 NA True
|
sabdab_dataset/1ap2/imgt/1ap2_D_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 3 |
+
V Mus_musculus IGHV14-3*02 IG IGHV IGHV14 IGHV14-3 NA True
|
sabdab_dataset/1ap2/sequence/1ap2_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ap2_A|seqres|full
|
| 2 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 3 |
+
>1ap2_A|seqres|region: L
|
| 4 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 5 |
+
>1ap2_A|structure|full
|
| 6 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEP-
|
sabdab_dataset/1ap2/sequence/1ap2_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ap2_B|seqres|full
|
| 2 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS
|
| 3 |
+
>1ap2_B|seqres|region: H
|
| 4 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPS--
|
| 5 |
+
>1ap2_B|structure|full
|
| 6 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVP---
|
sabdab_dataset/1ap2/sequence/1ap2_C_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ap2_C|seqres|full
|
| 2 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 3 |
+
>1ap2_C|seqres|region: L
|
| 4 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 5 |
+
>1ap2_C|structure|full
|
| 6 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
sabdab_dataset/1ap2/sequence/1ap2_D_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ap2_D|seqres|full
|
| 2 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS
|
| 3 |
+
>1ap2_D|seqres|region: H
|
| 4 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPS--
|
| 5 |
+
>1ap2_D|structure|full
|
| 6 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS
|
sabdab_dataset/1ap2/sequence/1ap2_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ap2_A|type: L
|
| 2 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 3 |
+
>1ap2_C|type: L
|
| 4 |
+
DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG
|
| 5 |
+
>1ap2_B|type: H
|
| 6 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS
|
| 7 |
+
>1ap2_D|type: H
|
| 8 |
+
EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS
|
sabdab_dataset/1ap2/structure/1ap2.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1ap2/structure/chothia/1ap2.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1dql/abangle/1dql.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1dql H L 0 -57.44 73.30 116.32 120.28 81.41 16.32
|
sabdab_dataset/1dql/annotation/1dql_H_VH.ann
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
|
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|
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|
|
|
|
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|
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|
|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 S
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 A
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 V
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H52A S
|
| 54 |
+
H53 D
|
| 55 |
+
H54 G
|
| 56 |
+
H55 G
|
| 57 |
+
H56 N
|
| 58 |
+
H57 K
|
| 59 |
+
H58 Y
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 T
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 R
|
| 73 |
+
H72 N
|
| 74 |
+
H73 D
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 L
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 T
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 F
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 G
|
| 100 |
+
H96 N
|
| 101 |
+
H97 P
|
| 102 |
+
H98 P
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 S
|
| 105 |
+
H100A S
|
| 106 |
+
H100B G
|
| 107 |
+
H100C W
|
| 108 |
+
H100D G
|
| 109 |
+
H100E G
|
| 110 |
+
H100F G
|
| 111 |
+
H101 D
|
| 112 |
+
H102 Y
|
| 113 |
+
H103 W
|
| 114 |
+
H104 G
|
| 115 |
+
H105 Q
|
| 116 |
+
H106 G
|
| 117 |
+
H107 T
|
| 118 |
+
H108 M
|
| 119 |
+
H109 V
|
| 120 |
+
H110 T
|
| 121 |
+
H111 V
|
| 122 |
+
H112 S
|
| 123 |
+
H113 S
|
sabdab_dataset/1dql/annotation/1dql_L_VL.ann
ADDED
|
@@ -0,0 +1,106 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 R
|
| 31 |
+
L31 N
|
| 32 |
+
L32 D
|
| 33 |
+
L33 L
|
| 34 |
+
L34 G
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 K
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 A
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 S
|
| 54 |
+
L54 L
|
| 55 |
+
L55 Q
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 L
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Q
|
| 92 |
+
L92 N
|
| 93 |
+
L93 S
|
| 94 |
+
L94 N
|
| 95 |
+
L96 W
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 Q
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 V
|
| 104 |
+
L105 D
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
sabdab_dataset/1dql/imgt/1dql_H_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Homo_sapiens IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 3 |
+
V Homo_sapiens IGHV3-30*10 IG IGHV IGHV3 IGHV3-30 NA True
|
sabdab_dataset/1dql/imgt/1dql_L_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Homo_sapiens IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 3 |
+
V Homo_sapiens IGKV1-17*01 IG IGKV IGKV1 IGKV1-17 NA True
|
sabdab_dataset/1dql/sequence/1dql_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1dql_H|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
|
| 3 |
+
>1dql_H|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
|
| 5 |
+
>1dql_H|structure|full
|
| 6 |
+
-VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
|
sabdab_dataset/1dql/sequence/1dql_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1dql_L|seqres|full
|
| 2 |
+
DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK
|
| 3 |
+
>1dql_L|seqres|region: L
|
| 4 |
+
DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK
|
| 5 |
+
>1dql_L|structure|full
|
| 6 |
+
DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK
|
sabdab_dataset/1dql/sequence/1dql_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1dql_H|type: H
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
|
| 3 |
+
>1dql_L|type: L
|
| 4 |
+
DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK
|
sabdab_dataset/1dql/structure/1dql.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1dql/structure/chothia/1dql.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1jhk/abangle/1jhk.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1jhk H L 0 -58.25 68.38 116.60 121.53 82.04 16.26
|
sabdab_dataset/1jhk/annotation/1jhk_H_VH.ann
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 I
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 T
|
| 18 |
+
H18 V
|
| 19 |
+
H19 R
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 D
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 S
|
| 29 |
+
H29 F
|
| 30 |
+
H30 M
|
| 31 |
+
H31 T
|
| 32 |
+
H32 S
|
| 33 |
+
H33 G
|
| 34 |
+
H34 M
|
| 35 |
+
H35 Q
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 Q
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 M
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 K
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 L
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 Q
|
| 55 |
+
H54 S
|
| 56 |
+
H55 G
|
| 57 |
+
H56 V
|
| 58 |
+
H57 P
|
| 59 |
+
H58 E
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 E
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 A
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 E
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 A
|
| 77 |
+
H76 T
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 I
|
| 84 |
+
H82A N
|
| 85 |
+
H82B N
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 N
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 T
|
| 99 |
+
H95 W
|
| 100 |
+
H96 G
|
| 101 |
+
H97 G
|
| 102 |
+
H98 N
|
| 103 |
+
H99 S
|
| 104 |
+
H101 A
|
| 105 |
+
H102 Y
|
| 106 |
+
H103 W
|
| 107 |
+
H104 G
|
| 108 |
+
H105 Q
|
| 109 |
+
H106 G
|
| 110 |
+
H107 T
|
| 111 |
+
H108 T
|
| 112 |
+
H109 L
|
| 113 |
+
H110 T
|
| 114 |
+
H111 V
|
| 115 |
+
H112 S
|
| 116 |
+
H113 S
|
sabdab_dataset/1jhk/annotation/1jhk_L_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 T
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 G
|
| 28 |
+
L28 N
|
| 29 |
+
L29 I
|
| 30 |
+
L30 H
|
| 31 |
+
L31 N
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 L
|
| 34 |
+
L34 A
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 Q
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 Q
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 V
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 N
|
| 51 |
+
L51 A
|
| 52 |
+
L52 K
|
| 53 |
+
L53 T
|
| 54 |
+
L54 L
|
| 55 |
+
L55 A
|
| 56 |
+
L56 D
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 Q
|
| 71 |
+
L71 Y
|
| 72 |
+
L72 S
|
| 73 |
+
L73 L
|
| 74 |
+
L74 K
|
| 75 |
+
L75 I
|
| 76 |
+
L76 N
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 G
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 H
|
| 90 |
+
L90 H
|
| 91 |
+
L91 F
|
| 92 |
+
L92 W
|
| 93 |
+
L93 S
|
| 94 |
+
L94 T
|
| 95 |
+
L95 P
|
| 96 |
+
L96 W
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 G
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 V
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/1jhk/imgt/1jhk_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 4 |
+
V Mus_musculus IGHV9-4*02 IG IGHV IGHV9 IGHV9-4 NA True
|
sabdab_dataset/1jhk/imgt/1jhk_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV12-41*02 IG IGKV IGKV12 IGKV12-41 NA True
|
sabdab_dataset/1jhk/sequence/1jhk_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jhk_H|seqres|full
|
| 2 |
+
QIQLVQSGPELKKPGETVRISCKASDYSFMTSGMQWVQQMPGKGLKWIGWLNTQSGVPEYAEDFKGRFAFSLETSATTAYLQINNLKNEDTATYFCATWGGNSAYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
| 3 |
+
>1jhk_H|seqres|region: H
|
| 4 |
+
QIQLVQSGPELKKPGETVRISCKASDYSFMTSGMQWVQQMPGKGLKWIGWLNTQSGVPEYAEDFKGRFAFSLETSATTAYLQINNLKNEDTATYFCATWGGNSAYWGQGTTLTVSS------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jhk_H|structure|full
|
| 6 |
+
-IQLVQSGPELKKPGETVRISCKASDY---TSGMQWVQQMPGKGLKWIGWLNTQSGVPEYAEDFKGRFAFSLET---TAYLQINNLKNEDTATYFCATWGGNSAYWGQGTTLTVSSAKTTPPSVYPLAPG----TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR--
|
sabdab_dataset/1jhk/sequence/1jhk_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jhk_L|seqres|full
|
| 2 |
+
DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1jhk_L|seqres|region: L
|
| 4 |
+
DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jhk_L|structure|full
|
| 6 |
+
DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE-
|
sabdab_dataset/1jhk/sequence/1jhk_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jhk_H|type: H
|
| 2 |
+
QIQLVQSGPELKKPGETVRISCKASDYSFMTSGMQWVQQMPGKGLKWIGWLNTQSGVPEYAEDFKGRFAFSLETSATTAYLQINNLKNEDTATYFCATWGGNSAYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
| 3 |
+
>1jhk_L|type: L
|
| 4 |
+
DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCHHFWSTPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/1jhk/structure/1jhk.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1jhk/structure/chothia/1jhk.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1jp5/abangle/1jp5.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1jp5 a A 0 -64.50 76.46 111.60 120.29 80.67 16.03
|
| 3 |
+
1jp5 b B 0 -64.57 76.48 111.63 120.33 80.86 16.03
|
sabdab_dataset/1jp5/annotation/1jp5_A_VH.ann
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 T
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 T
|
| 26 |
+
H26 N
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 A
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 D
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 S
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 G
|
| 44 |
+
H44 D
|
| 45 |
+
H45 L
|
| 46 |
+
H46 K
|
| 47 |
+
H47 Y
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 E
|
| 55 |
+
H54 T
|
| 56 |
+
H55 D
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 F
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 A
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 T
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 I
|
| 84 |
+
H82A N
|
| 85 |
+
H82B N
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 N
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 D
|
| 100 |
+
H96 R
|
| 101 |
+
H97 H
|
| 102 |
+
H98 D
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A E
|
| 106 |
+
H100B I
|
| 107 |
+
H100C F
|
| 108 |
+
H101 T
|
| 109 |
+
H102 Y
|
| 110 |
+
H103 W
|
| 111 |
+
H104 G
|
| 112 |
+
H105 Q
|
| 113 |
+
H106 G
|
| 114 |
+
H107 T
|
| 115 |
+
H108 T
|
| 116 |
+
H109 V
|
| 117 |
+
H110 T
|
| 118 |
+
H111 V
|
| 119 |
+
H112 S
|
| 120 |
+
H113 S
|
sabdab_dataset/1jp5/annotation/1jp5_A_VL.ann
ADDED
|
@@ -0,0 +1,115 @@
|
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|
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|
|
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|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 T
|
| 8 |
+
L8 P
|
| 9 |
+
L9 L
|
| 10 |
+
L10 Y
|
| 11 |
+
L11 L
|
| 12 |
+
L12 P
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 Q
|
| 19 |
+
L19 A
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 T
|
| 29 |
+
L29 I
|
| 30 |
+
L30 V
|
| 31 |
+
L30A H
|
| 32 |
+
L30B N
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 E
|
| 40 |
+
L35 W
|
| 41 |
+
L36 Y
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 K
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 K
|
| 56 |
+
L51 V
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 R
|
| 60 |
+
L55 F
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 D
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 K
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 L
|
| 89 |
+
L84 G
|
| 90 |
+
L85 I
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 F
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 G
|
| 97 |
+
L92 S
|
| 98 |
+
L93 H
|
| 99 |
+
L94 F
|
| 100 |
+
L95 P
|
| 101 |
+
L96 P
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 G
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 I
|
| 112 |
+
L107 K
|
| 113 |
+
L108 G
|
| 114 |
+
L109 G
|
| 115 |
+
L110 G
|
sabdab_dataset/1jp5/annotation/1jp5_B_VH.ann
ADDED
|
@@ -0,0 +1,120 @@
|
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|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 T
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 T
|
| 26 |
+
H26 N
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 A
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 D
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 S
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 G
|
| 44 |
+
H44 D
|
| 45 |
+
H45 L
|
| 46 |
+
H46 K
|
| 47 |
+
H47 Y
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 E
|
| 55 |
+
H54 T
|
| 56 |
+
H55 D
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 F
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 A
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 T
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 I
|
| 84 |
+
H82A N
|
| 85 |
+
H82B N
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 N
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 T
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 F
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 D
|
| 100 |
+
H96 R
|
| 101 |
+
H97 H
|
| 102 |
+
H98 D
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A E
|
| 106 |
+
H100B I
|
| 107 |
+
H100C F
|
| 108 |
+
H101 T
|
| 109 |
+
H102 Y
|
| 110 |
+
H103 W
|
| 111 |
+
H104 G
|
| 112 |
+
H105 Q
|
| 113 |
+
H106 G
|
| 114 |
+
H107 T
|
| 115 |
+
H108 T
|
| 116 |
+
H109 V
|
| 117 |
+
H110 T
|
| 118 |
+
H111 V
|
| 119 |
+
H112 S
|
| 120 |
+
H113 S
|
sabdab_dataset/1jp5/annotation/1jp5_B_VL.ann
ADDED
|
@@ -0,0 +1,115 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 T
|
| 8 |
+
L8 P
|
| 9 |
+
L9 L
|
| 10 |
+
L10 Y
|
| 11 |
+
L11 L
|
| 12 |
+
L12 P
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 Q
|
| 19 |
+
L19 A
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 S
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 T
|
| 29 |
+
L29 I
|
| 30 |
+
L30 V
|
| 31 |
+
L30A H
|
| 32 |
+
L30B N
|
| 33 |
+
L30C N
|
| 34 |
+
L30D G
|
| 35 |
+
L30E N
|
| 36 |
+
L31 T
|
| 37 |
+
L32 Y
|
| 38 |
+
L33 L
|
| 39 |
+
L34 E
|
| 40 |
+
L35 W
|
| 41 |
+
L36 Y
|
| 42 |
+
L37 L
|
| 43 |
+
L38 Q
|
| 44 |
+
L39 K
|
| 45 |
+
L40 P
|
| 46 |
+
L41 G
|
| 47 |
+
L42 Q
|
| 48 |
+
L43 S
|
| 49 |
+
L44 P
|
| 50 |
+
L45 Q
|
| 51 |
+
L46 L
|
| 52 |
+
L47 L
|
| 53 |
+
L48 I
|
| 54 |
+
L49 Y
|
| 55 |
+
L50 K
|
| 56 |
+
L51 V
|
| 57 |
+
L52 S
|
| 58 |
+
L53 N
|
| 59 |
+
L54 R
|
| 60 |
+
L55 F
|
| 61 |
+
L56 S
|
| 62 |
+
L57 G
|
| 63 |
+
L58 V
|
| 64 |
+
L59 P
|
| 65 |
+
L60 D
|
| 66 |
+
L61 R
|
| 67 |
+
L62 F
|
| 68 |
+
L63 S
|
| 69 |
+
L64 G
|
| 70 |
+
L65 S
|
| 71 |
+
L66 G
|
| 72 |
+
L67 S
|
| 73 |
+
L68 G
|
| 74 |
+
L69 T
|
| 75 |
+
L70 D
|
| 76 |
+
L71 F
|
| 77 |
+
L72 T
|
| 78 |
+
L73 L
|
| 79 |
+
L74 K
|
| 80 |
+
L75 I
|
| 81 |
+
L76 S
|
| 82 |
+
L77 R
|
| 83 |
+
L78 V
|
| 84 |
+
L79 E
|
| 85 |
+
L80 A
|
| 86 |
+
L81 E
|
| 87 |
+
L82 D
|
| 88 |
+
L83 L
|
| 89 |
+
L84 G
|
| 90 |
+
L85 I
|
| 91 |
+
L86 Y
|
| 92 |
+
L87 Y
|
| 93 |
+
L88 C
|
| 94 |
+
L89 F
|
| 95 |
+
L90 Q
|
| 96 |
+
L91 G
|
| 97 |
+
L92 S
|
| 98 |
+
L93 H
|
| 99 |
+
L94 F
|
| 100 |
+
L95 P
|
| 101 |
+
L96 P
|
| 102 |
+
L97 T
|
| 103 |
+
L98 F
|
| 104 |
+
L99 G
|
| 105 |
+
L100 G
|
| 106 |
+
L101 G
|
| 107 |
+
L102 T
|
| 108 |
+
L103 K
|
| 109 |
+
L104 L
|
| 110 |
+
L105 E
|
| 111 |
+
L106 I
|
| 112 |
+
L107 K
|
| 113 |
+
L108 G
|
| 114 |
+
L109 G
|
| 115 |
+
L110 G
|
sabdab_dataset/1jp5/imgt/1jp5_A_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 3 |
+
V Mus_musculus IGHV9-2-1*01 IG IGHV IGHV9 IGHV9-2-1 NA True
|
sabdab_dataset/1jp5/imgt/1jp5_A_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ1*02 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 3 |
+
V Mus_musculus IGKV1-117*01 IG IGKV IGKV1 IGKV1-117 NA True
|
sabdab_dataset/1jp5/imgt/1jp5_B_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 3 |
+
V Mus_musculus IGHV9-2-1*01 IG IGHV IGHV9 IGHV9-2-1 NA True
|
sabdab_dataset/1jp5/imgt/1jp5_B_L.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Mus_musculus IGKJ1*02 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 3 |
+
V Mus_musculus IGKV1-117*01 IG IGKV IGKV1 IGKV1-117 NA True
|
sabdab_dataset/1jp5/sequence/1jp5_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jp5_A|seqres|full
|
| 2 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 3 |
+
>1jp5_A|seqres|region: H
|
| 4 |
+
-------------------------------------------------------------------------------------------------------------------------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 5 |
+
>1jp5_A|structure|full
|
| 6 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIK---------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
sabdab_dataset/1jp5/sequence/1jp5_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jp5_A|seqres|full
|
| 2 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 3 |
+
>1jp5_A|seqres|region: L
|
| 4 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGG------------------------------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jp5_A|structure|full
|
| 6 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIK---------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
sabdab_dataset/1jp5/sequence/1jp5_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jp5_B|seqres|full
|
| 2 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 3 |
+
>1jp5_B|seqres|region: H
|
| 4 |
+
-------------------------------------------------------------------------------------------------------------------------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 5 |
+
>1jp5_B|structure|full
|
| 6 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIK---------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
sabdab_dataset/1jp5/sequence/1jp5_B_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jp5_B|seqres|full
|
| 2 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 3 |
+
>1jp5_B|seqres|region: L
|
| 4 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGG------------------------------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jp5_B|structure|full
|
| 6 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIK---------------EVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
sabdab_dataset/1jp5/sequence/1jp5_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jp5_A|type: multi-domain chain
|
| 2 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 3 |
+
>1jp5_C|type: non-ab
|
| 4 |
+
PQITLWQRR
|
| 5 |
+
>1jp5_B|type: multi-domain chain
|
| 6 |
+
DILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVSS
|
| 7 |
+
>1jp5_D|type: non-ab
|
| 8 |
+
PQITLWQRR
|