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- sabdab_dataset/1c5d/abangle/1c5d.abangle +3 -0
- sabdab_dataset/1c5d/annotation/1c5d_A_VL.ann +108 -0
- sabdab_dataset/1c5d/annotation/1c5d_B_VH.ann +117 -0
- sabdab_dataset/1c5d/annotation/1c5d_H_VH.ann +117 -0
- sabdab_dataset/1c5d/annotation/1c5d_L_VL.ann +108 -0
- sabdab_dataset/1c5d/imgt/1c5d_A_L.ann +4 -0
- sabdab_dataset/1c5d/imgt/1c5d_B_H.ann +4 -0
- sabdab_dataset/1c5d/imgt/1c5d_H_H.ann +4 -0
- sabdab_dataset/1c5d/imgt/1c5d_L_L.ann +4 -0
- sabdab_dataset/1c5d/sequence/1c5d_A_VL.fa +6 -0
- sabdab_dataset/1c5d/sequence/1c5d_B_VH.fa +6 -0
- sabdab_dataset/1c5d/sequence/1c5d_H_VH.fa +6 -0
- sabdab_dataset/1c5d/sequence/1c5d_L_VL.fa +6 -0
- sabdab_dataset/1c5d/sequence/1c5d_raw.pdb +8 -0
- sabdab_dataset/1c5d/structure/1c5d.pdb +0 -0
- sabdab_dataset/1c5d/structure/chothia/1c5d.pdb +0 -0
- sabdab_dataset/1cfs/abangle/1cfs.abangle +2 -0
- sabdab_dataset/1cfs/annotation/1cfs_A_VL.ann +109 -0
- sabdab_dataset/1cfs/annotation/1cfs_B_VH.ann +112 -0
- sabdab_dataset/1cfs/imgt/1cfs_A_L.ann +4 -0
- sabdab_dataset/1cfs/imgt/1cfs_B_H.ann +4 -0
- sabdab_dataset/1cfs/sequence/1cfs_A_VL.fa +6 -0
- sabdab_dataset/1cfs/sequence/1cfs_B_VH.fa +6 -0
- sabdab_dataset/1cfs/sequence/1cfs_raw.pdb +6 -0
- sabdab_dataset/1cfs/structure/1cfs.pdb +0 -0
- sabdab_dataset/1cfs/structure/chothia/1cfs.pdb +0 -0
- sabdab_dataset/1ct8/abangle/1ct8.abangle +3 -0
- sabdab_dataset/1ct8/annotation/1ct8_A_VL.ann +109 -0
- sabdab_dataset/1ct8/annotation/1ct8_B_VH.ann +118 -0
- sabdab_dataset/1ct8/annotation/1ct8_C_VL.ann +109 -0
- sabdab_dataset/1ct8/annotation/1ct8_D_VH.ann +118 -0
- sabdab_dataset/1ct8/imgt/1ct8_A_L.ann +4 -0
- sabdab_dataset/1ct8/imgt/1ct8_B_H.ann +4 -0
- sabdab_dataset/1ct8/imgt/1ct8_C_L.ann +4 -0
- sabdab_dataset/1ct8/imgt/1ct8_D_H.ann +4 -0
- sabdab_dataset/1ct8/sequence/1ct8_A_VL.fa +6 -0
- sabdab_dataset/1ct8/sequence/1ct8_B_VH.fa +6 -0
- sabdab_dataset/1ct8/sequence/1ct8_C_VL.fa +6 -0
- sabdab_dataset/1ct8/sequence/1ct8_D_VH.fa +6 -0
- sabdab_dataset/1ct8/sequence/1ct8_raw.pdb +8 -0
- sabdab_dataset/1ct8/structure/1ct8.pdb +0 -0
- sabdab_dataset/1ct8/structure/chothia/1ct8.pdb +0 -0
- sabdab_dataset/1jps/abangle/1jps.abangle +2 -0
- sabdab_dataset/1jps/annotation/1jps_H_VH.ann +117 -0
- sabdab_dataset/1jps/annotation/1jps_L_VL.ann +110 -0
- sabdab_dataset/1jps/imgt/1jps_H_H.ann +4 -0
- sabdab_dataset/1jps/imgt/1jps_L_L.ann +4 -0
- sabdab_dataset/1jps/sequence/1jps_H_VH.fa +6 -0
- sabdab_dataset/1jps/sequence/1jps_L_VL.fa +6 -0
- sabdab_dataset/1jps/sequence/1jps_raw.pdb +6 -0
sabdab_dataset/1c5d/abangle/1c5d.abangle
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pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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1c5d B A 0 -50.73 72.88 120.84 118.24 81.49 15.98
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1c5d H L 0 -50.93 71.76 120.58 120.71 79.54 15.88
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sabdab_dataset/1c5d/annotation/1c5d_A_VL.ann
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sabdab_dataset/1c5d/annotation/1c5d_B_VH.ann
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sabdab_dataset/1c5d/annotation/1c5d_H_VH.ann
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 K
|
| 4 |
+
H4 L
|
| 5 |
+
H5 L
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 P
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 S
|
| 16 |
+
H16 Q
|
| 17 |
+
H17 T
|
| 18 |
+
H18 L
|
| 19 |
+
H19 S
|
| 20 |
+
H20 L
|
| 21 |
+
H21 T
|
| 22 |
+
H22 C
|
| 23 |
+
H23 T
|
| 24 |
+
H24 V
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 P
|
| 29 |
+
H29 L
|
| 30 |
+
H30 T
|
| 31 |
+
H31 T
|
| 32 |
+
H32 N
|
| 33 |
+
H33 G
|
| 34 |
+
H34 V
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 P
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 A
|
| 50 |
+
H50 A
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H53 S
|
| 54 |
+
H54 G
|
| 55 |
+
H55 G
|
| 56 |
+
H56 S
|
| 57 |
+
H57 P
|
| 58 |
+
H58 Y
|
| 59 |
+
H59 Y
|
| 60 |
+
H60 N
|
| 61 |
+
H61 S
|
| 62 |
+
H62 A
|
| 63 |
+
H63 L
|
| 64 |
+
H64 K
|
| 65 |
+
H65 S
|
| 66 |
+
H66 R
|
| 67 |
+
H67 L
|
| 68 |
+
H68 S
|
| 69 |
+
H69 I
|
| 70 |
+
H70 N
|
| 71 |
+
H71 R
|
| 72 |
+
H72 D
|
| 73 |
+
H73 T
|
| 74 |
+
H74 S
|
| 75 |
+
H75 K
|
| 76 |
+
H76 S
|
| 77 |
+
H77 Q
|
| 78 |
+
H78 V
|
| 79 |
+
H79 F
|
| 80 |
+
H80 L
|
| 81 |
+
H81 K
|
| 82 |
+
H82 M
|
| 83 |
+
H82A N
|
| 84 |
+
H82B S
|
| 85 |
+
H82C L
|
| 86 |
+
H83 Q
|
| 87 |
+
H84 T
|
| 88 |
+
H85 E
|
| 89 |
+
H86 D
|
| 90 |
+
H87 T
|
| 91 |
+
H88 A
|
| 92 |
+
H89 I
|
| 93 |
+
H90 Y
|
| 94 |
+
H91 F
|
| 95 |
+
H92 C
|
| 96 |
+
H93 T
|
| 97 |
+
H94 R
|
| 98 |
+
H95 E
|
| 99 |
+
H96 D
|
| 100 |
+
H97 G
|
| 101 |
+
H98 W
|
| 102 |
+
H99 N
|
| 103 |
+
H100 Y
|
| 104 |
+
H100A F
|
| 105 |
+
H101 D
|
| 106 |
+
H102 Y
|
| 107 |
+
H103 W
|
| 108 |
+
H104 G
|
| 109 |
+
H105 P
|
| 110 |
+
H106 G
|
| 111 |
+
H107 T
|
| 112 |
+
H108 M
|
| 113 |
+
H109 V
|
| 114 |
+
H110 T
|
| 115 |
+
H111 V
|
| 116 |
+
H112 S
|
| 117 |
+
H113 S
|
sabdab_dataset/1c5d/annotation/1c5d_L_VL.ann
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 P
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 K
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 Q
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 N
|
| 31 |
+
L31 K
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 I
|
| 34 |
+
L34 A
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 R
|
| 46 |
+
L46 Q
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 R
|
| 50 |
+
L50 Y
|
| 51 |
+
L51 T
|
| 52 |
+
L52 S
|
| 53 |
+
L53 I
|
| 54 |
+
L54 L
|
| 55 |
+
L55 V
|
| 56 |
+
L56 L
|
| 57 |
+
L57 G
|
| 58 |
+
L58 T
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 R
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 S
|
| 73 |
+
L73 F
|
| 74 |
+
L74 S
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 N
|
| 78 |
+
L78 V
|
| 79 |
+
L79 A
|
| 80 |
+
L80 S
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 I
|
| 84 |
+
L84 A
|
| 85 |
+
L85 S
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 L
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Y
|
| 92 |
+
L92 G
|
| 93 |
+
L93 N
|
| 94 |
+
L94 L
|
| 95 |
+
L96 Y
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 A
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 L
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 A
|
sabdab_dataset/1c5d/imgt/1c5d_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Rattus_norvegicus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Rattus_norvegicus IGKJ2-3*01 IG IGKJ IGKJ2 IGKJ2-3 NA True
|
| 4 |
+
V Rattus_norvegicus IGKV19S2*01 IG IGKV IGKV19 IGKV19S2 NA True
|
sabdab_dataset/1c5d/imgt/1c5d_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Rattus_norvegicus IGHG2a*01 IG IGHC IGHG2a IGHG2a IGg True
|
| 3 |
+
J Rattus_norvegicus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Rattus_norvegicus IGHV2S8*01 IG IGHV IGHV2 IGHV2S8 NA True
|
sabdab_dataset/1c5d/imgt/1c5d_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Rattus_norvegicus IGHG2a*01 IG IGHC IGHG2a IGHG2a IGg True
|
| 3 |
+
J Rattus_norvegicus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Rattus_norvegicus IGHV2S8*01 IG IGHV IGHV2 IGHV2S8 NA True
|
sabdab_dataset/1c5d/imgt/1c5d_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Rattus_norvegicus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Rattus_norvegicus IGKJ2-3*01 IG IGKJ IGKJ2 IGKJ2-3 NA True
|
| 4 |
+
V Rattus_norvegicus IGKV19S2*01 IG IGKV IGKV19 IGKV19S2 NA True
|
sabdab_dataset/1c5d/sequence/1c5d_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1c5d_A|seqres|full
|
| 2 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
| 3 |
+
>1c5d_A|seqres|region: L
|
| 4 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1c5d_A|structure|full
|
| 6 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
sabdab_dataset/1c5d/sequence/1c5d_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1c5d_B|seqres|full
|
| 2 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR
|
| 3 |
+
>1c5d_B|seqres|region: H
|
| 4 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS--------------------------------------------------------------------------------------------------
|
| 5 |
+
>1c5d_B|structure|full
|
| 6 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR
|
sabdab_dataset/1c5d/sequence/1c5d_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1c5d_H|seqres|full
|
| 2 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR
|
| 3 |
+
>1c5d_H|seqres|region: H
|
| 4 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS--------------------------------------------------------------------------------------------------
|
| 5 |
+
>1c5d_H|structure|full
|
| 6 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLER-
|
sabdab_dataset/1c5d/sequence/1c5d_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1c5d_L|seqres|full
|
| 2 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
| 3 |
+
>1c5d_L|seqres|region: L
|
| 4 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1c5d_L|structure|full
|
| 6 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
sabdab_dataset/1c5d/sequence/1c5d_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1c5d_A|type: L
|
| 2 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
| 3 |
+
>1c5d_H|type: H
|
| 4 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR
|
| 5 |
+
>1c5d_B|type: H
|
| 6 |
+
EVKLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPSQTVTCNVAHPASSTKVDKKLERR
|
| 7 |
+
>1c5d_L|type: L
|
| 8 |
+
DIQMTQSPPSLSASLGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFSGSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKSFNRNEC
|
sabdab_dataset/1c5d/structure/1c5d.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1c5d/structure/chothia/1c5d.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1cfs/abangle/1cfs.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1cfs B A 0 -56.98 69.16 111.38 120.45 81.75 16.23
|
sabdab_dataset/1cfs/annotation/1cfs_A_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 K
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 M
|
| 12 |
+
L12 Y
|
| 13 |
+
L13 T
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 K
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 N
|
| 31 |
+
L31 S
|
| 32 |
+
L32 F
|
| 33 |
+
L33 L
|
| 34 |
+
L34 T
|
| 35 |
+
L35 W
|
| 36 |
+
L36 F
|
| 37 |
+
L37 L
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 T
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 R
|
| 51 |
+
L51 A
|
| 52 |
+
L52 N
|
| 53 |
+
L53 R
|
| 54 |
+
L54 L
|
| 55 |
+
L55 M
|
| 56 |
+
L56 I
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 Q
|
| 70 |
+
L70 T
|
| 71 |
+
L71 Y
|
| 72 |
+
L72 S
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 E
|
| 80 |
+
L80 Y
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 M
|
| 84 |
+
L84 G
|
| 85 |
+
L85 I
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 L
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Y
|
| 92 |
+
L92 D
|
| 93 |
+
L93 D
|
| 94 |
+
L94 F
|
| 95 |
+
L95 P
|
| 96 |
+
L96 L
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 A
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 D
|
| 106 |
+
L106 L
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/1cfs/annotation/1cfs_B_VH.ann
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
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|
|
|
|
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|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 D
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 R
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 L
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 I
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 D
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 E
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 T
|
| 41 |
+
H41 P
|
| 42 |
+
H42 V
|
| 43 |
+
H43 H
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 G
|
| 51 |
+
H51 I
|
| 52 |
+
H52 H
|
| 53 |
+
H52A P
|
| 54 |
+
H53 G
|
| 55 |
+
H54 S
|
| 56 |
+
H55 S
|
| 57 |
+
H56 G
|
| 58 |
+
H57 T
|
| 59 |
+
H58 A
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 T
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 M
|
| 82 |
+
H81 E
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 T
|
| 98 |
+
H94 R
|
| 99 |
+
H95 K
|
| 100 |
+
H101 D
|
| 101 |
+
H102 Y
|
| 102 |
+
H103 W
|
| 103 |
+
H104 G
|
| 104 |
+
H105 Q
|
| 105 |
+
H106 G
|
| 106 |
+
H107 T
|
| 107 |
+
H108 L
|
| 108 |
+
H109 V
|
| 109 |
+
H110 T
|
| 110 |
+
H111 V
|
| 111 |
+
H112 S
|
| 112 |
+
H113 A
|
sabdab_dataset/1cfs/imgt/1cfs_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ5*01 IG IGKJ IGKJ5 IGKJ5 NA True
|
| 4 |
+
V Mus_musculus IGKV14-111*01 IG IGKV IGKV14 IGKV14-111 NA True
|
sabdab_dataset/1cfs/imgt/1cfs_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2A*01 IG IGHC IGHG2A IGHG2A IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV1-15*01 IG IGHV IGHV1 IGHV1-15 NA True
|
sabdab_dataset/1cfs/sequence/1cfs_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cfs_A|seqres|full
|
| 2 |
+
DIKMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1cfs_A|seqres|region: L
|
| 4 |
+
DIKMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1cfs_A|structure|full
|
| 6 |
+
DIKMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/1cfs/sequence/1cfs_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cfs_B|seqres|full
|
| 2 |
+
QDQLQQSGAELVRPGASVKLSCKALGYIFTDYEIHWVKQTPVHGLEWIGGIHPGSSGTAYNQKFKGKATLTADKSSTTAFMELSSLTSEDSAVYYCTRKDYWGQGTLVTVSAAKTTAPSVYPLVPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRV
|
| 3 |
+
>1cfs_B|seqres|region: H
|
| 4 |
+
QDQLQQSGAELVRPGASVKLSCKALGYIFTDYEIHWVKQTPVHGLEWIGGIHPGSSGTAYNQKFKGKATLTADKSSTTAFMELSSLTSEDSAVYYCTRKDYWGQGTLVTVSA-----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1cfs_B|structure|full
|
| 6 |
+
QDQLQQSGAELVRPGASVKLSCKALGYIFTDYEIHWVKQTPVHGLEWIGGIHPGSSGTAYNQKFKGKATLTADKSSTTAFMELSSLTSEDSAVYYCTRKDYWGQGTLVTVSAAKTTAPSVYPLVPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRV
|
sabdab_dataset/1cfs/sequence/1cfs_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
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| 1 |
+
>1cfs_A|type: L
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| 2 |
+
DIKMTQSPSSMYTSLGERVTITCKASQDINSFLTWFLQKPGKSPKTLIYRANRLMIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
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| 3 |
+
>1cfs_C|type: non-ab
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| 4 |
+
GLYEWGGARIT
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| 5 |
+
>1cfs_B|type: H
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| 6 |
+
QDQLQQSGAELVRPGASVKLSCKALGYIFTDYEIHWVKQTPVHGLEWIGGIHPGSSGTAYNQKFKGKATLTADKSSTTAFMELSSLTSEDSAVYYCTRKDYWGQGTLVTVSAAKTTAPSVYPLVPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRV
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sabdab_dataset/1cfs/structure/1cfs.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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sabdab_dataset/1cfs/structure/chothia/1cfs.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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sabdab_dataset/1ct8/abangle/1ct8.abangle
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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| 2 |
+
1ct8 D C 0 -56.65 70.73 113.33 119.47 85.83 16.58
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| 3 |
+
1ct8 B A 0 -56.93 70.74 113.41 119.02 85.81 16.64
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sabdab_dataset/1ct8/annotation/1ct8_A_VL.ann
ADDED
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@@ -0,0 +1,109 @@
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| 1 |
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L1 E
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| 2 |
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L2 L
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L3 V
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| 4 |
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L4 M
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L5 T
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L6 Q
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L7 T
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L8 P
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L9 A
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L10 T
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L11 L
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L12 S
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L13 V
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L14 T
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L15 P
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L16 G
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| 17 |
+
L17 D
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L18 S
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+
L19 V
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L20 S
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L21 L
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L22 S
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L23 C
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L24 R
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L25 A
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L26 S
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L27 Q
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L28 S
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L29 V
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L30 S
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L31 N
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L32 K
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L33 L
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L34 H
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L35 W
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L36 Y
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L37 Q
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L38 Q
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L39 K
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L40 S
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L41 H
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L42 E
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L43 S
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L44 P
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L45 R
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L46 L
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L47 L
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L48 I
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L49 K
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L50 F
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L51 A
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L52 S
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L53 Q
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L54 S
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L55 I
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L56 P
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| 57 |
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L57 G
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| 58 |
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L58 I
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L59 P
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L60 S
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L61 R
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L62 F
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L63 S
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L64 G
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L65 S
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L66 G
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L67 S
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L68 G
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L69 S
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L70 D
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| 71 |
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L71 F
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| 72 |
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L72 T
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L73 L
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L74 S
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L75 I
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L76 N
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L77 S
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L78 V
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L79 E
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L80 T
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L81 E
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L82 D
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L83 F
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L84 G
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L85 I
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L86 Y
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L87 F
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L88 C
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L89 H
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L90 Q
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| 91 |
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L91 T
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L92 H
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| 93 |
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L93 G
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L94 R
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L95 P
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L96 L
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L97 T
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L98 F
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L99 G
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| 100 |
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L100 A
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| 101 |
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L101 G
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| 102 |
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L102 T
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| 103 |
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L103 K
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| 104 |
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L104 L
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| 105 |
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L105 E
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| 106 |
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L106 L
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| 107 |
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L107 K
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| 108 |
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L108 R
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| 109 |
+
L109 A
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sabdab_dataset/1ct8/annotation/1ct8_B_VH.ann
ADDED
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@@ -0,0 +1,118 @@
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| 1 |
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H1 Q
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| 2 |
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H2 V
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| 3 |
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H3 K
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| 4 |
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H4 L
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| 5 |
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H5 L
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H6 E
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H7 S
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H8 G
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H9 A
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H10 V
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H11 L
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H12 V
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H13 K
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H14 P
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H15 G
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H16 A
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H17 S
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H18 V
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H19 K
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H20 L
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H21 S
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H22 C
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H23 K
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H24 T
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H25 S
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H26 G
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H27 F
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H28 T
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H29 F
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H30 S
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H31 S
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H32 S
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H33 Y
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H34 I
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H35 N
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H36 W
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H37 L
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H38 K
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H39 Q
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H40 K
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H41 P
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H42 G
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H43 Q
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H44 S
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H45 L
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H46 E
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H47 W
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H48 I
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H49 A
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H50 W
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H51 I
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H52 Y
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H52A A
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H53 G
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H54 S
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H55 G
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H56 G
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H57 T
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H58 V
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H59 Y
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H60 N
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H61 Q
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H62 H
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H63 F
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H64 T
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H65 D
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H66 K
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H67 A
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H68 R
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H69 L
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H70 T
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H71 V
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H72 D
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H73 T
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H74 S
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H75 S
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H76 S
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H77 T
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H78 A
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H79 Y
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H80 M
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H81 Q
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H82 F
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H82A S
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H82B S
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H82C L
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H83 T
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H84 T
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H85 E
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H86 D
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H87 S
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H88 A
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H89 I
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H90 Y
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H91 Y
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H92 C
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H93 A
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H94 R
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H95 Y
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H96 R
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H97 Y
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H98 D
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H99 E
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H100 G
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H100A F
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H101 A
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H102 Y
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H103 W
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H104 G
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H105 Q
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| 111 |
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H106 G
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H107 T
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H108 L
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| 114 |
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H109 V
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H110 T
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H111 V
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| 117 |
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H112 S
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| 118 |
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H113 A
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sabdab_dataset/1ct8/annotation/1ct8_C_VL.ann
ADDED
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@@ -0,0 +1,109 @@
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| 1 |
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L1 E
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| 2 |
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L2 L
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| 3 |
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L3 V
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L4 M
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L5 T
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L6 Q
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L7 T
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L8 P
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L9 A
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L10 T
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L11 L
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L12 S
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L13 V
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L14 T
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L15 P
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L16 G
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L17 D
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L18 S
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L19 V
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L20 S
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L21 L
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L22 S
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L23 C
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L24 R
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L25 A
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L26 S
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L27 Q
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L28 S
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L29 V
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L30 S
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L31 N
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L32 K
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L33 L
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L34 H
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L35 W
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L36 Y
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L37 Q
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L38 Q
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L39 K
|
| 40 |
+
L40 S
|
| 41 |
+
L41 H
|
| 42 |
+
L42 E
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 R
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 K
|
| 50 |
+
L50 F
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 Q
|
| 54 |
+
L54 S
|
| 55 |
+
L55 I
|
| 56 |
+
L56 P
|
| 57 |
+
L57 G
|
| 58 |
+
L58 I
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 S
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 S
|
| 75 |
+
L75 I
|
| 76 |
+
L76 N
|
| 77 |
+
L77 S
|
| 78 |
+
L78 V
|
| 79 |
+
L79 E
|
| 80 |
+
L80 T
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 G
|
| 85 |
+
L85 I
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 F
|
| 88 |
+
L88 C
|
| 89 |
+
L89 H
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 T
|
| 92 |
+
L92 H
|
| 93 |
+
L93 G
|
| 94 |
+
L94 R
|
| 95 |
+
L95 P
|
| 96 |
+
L96 L
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 A
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 L
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/1ct8/annotation/1ct8_D_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 K
|
| 4 |
+
H4 L
|
| 5 |
+
H5 L
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 V
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 T
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 S
|
| 32 |
+
H32 S
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 I
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 L
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 K
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 S
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 A
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A A
|
| 54 |
+
H53 G
|
| 55 |
+
H54 S
|
| 56 |
+
H55 G
|
| 57 |
+
H56 G
|
| 58 |
+
H57 T
|
| 59 |
+
H58 V
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 H
|
| 64 |
+
H63 F
|
| 65 |
+
H64 T
|
| 66 |
+
H65 D
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 R
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 V
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 F
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 T
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 I
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 Y
|
| 100 |
+
H96 R
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 D
|
| 103 |
+
H99 E
|
| 104 |
+
H100 G
|
| 105 |
+
H100A F
|
| 106 |
+
H101 A
|
| 107 |
+
H102 Y
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 Q
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 L
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 A
|
sabdab_dataset/1ct8/imgt/1ct8_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ5*01 IG IGKJ IGKJ5 IGKJ5 NA True
|
| 4 |
+
V Mus_musculus IGKV5-43*01 IG IGKV IGKV5 IGKV5-43 NA True
|
sabdab_dataset/1ct8/imgt/1ct8_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV1-84*01 IG IGHV IGHV1 IGHV1-84 NA True
|
sabdab_dataset/1ct8/imgt/1ct8_C_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ5*01 IG IGKJ IGKJ5 IGKJ5 NA True
|
| 4 |
+
V Mus_musculus IGKV5-43*01 IG IGKV IGKV5 IGKV5-43 NA True
|
sabdab_dataset/1ct8/imgt/1ct8_D_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ3*01 IG IGHJ IGHJ3 IGHJ3 NA True
|
| 4 |
+
V Mus_musculus IGHV1-84*01 IG IGHV IGHV1 IGHV1-84 NA True
|
sabdab_dataset/1ct8/sequence/1ct8_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ct8_A|seqres|full
|
| 2 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1ct8_A|seqres|region: L
|
| 4 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ct8_A|structure|full
|
| 6 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/1ct8/sequence/1ct8_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ct8_B|seqres|full
|
| 2 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
| 3 |
+
>1ct8_B|seqres|region: H
|
| 4 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSA------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ct8_B|structure|full
|
| 6 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
sabdab_dataset/1ct8/sequence/1ct8_C_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ct8_C|seqres|full
|
| 2 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1ct8_C|seqres|region: L
|
| 4 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ct8_C|structure|full
|
| 6 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/1ct8/sequence/1ct8_D_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ct8_D|seqres|full
|
| 2 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
| 3 |
+
>1ct8_D|seqres|region: H
|
| 4 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSA------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1ct8_D|structure|full
|
| 6 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
sabdab_dataset/1ct8/sequence/1ct8_raw.pdb
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1ct8_A|type: L
|
| 2 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>1ct8_C|type: L
|
| 4 |
+
ELVMTQTPATLSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHGRPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 5 |
+
>1ct8_B|type: H
|
| 6 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
| 7 |
+
>1ct8_D|type: H
|
| 8 |
+
QVKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRYDEGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC
|
sabdab_dataset/1ct8/structure/1ct8.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1ct8/structure/chothia/1ct8.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1jps/abangle/1jps.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1jps H L 0 -56.96 71.62 122.18 122.57 81.01 16.20
|
sabdab_dataset/1jps/annotation/1jps_H_VH.ann
ADDED
|
@@ -0,0 +1,117 @@
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|
|
|
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|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 N
|
| 29 |
+
H29 I
|
| 30 |
+
H30 K
|
| 31 |
+
H31 E
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 L
|
| 51 |
+
H51 I
|
| 52 |
+
H52 D
|
| 53 |
+
H52A P
|
| 54 |
+
H53 E
|
| 55 |
+
H54 Q
|
| 56 |
+
H55 G
|
| 57 |
+
H56 N
|
| 58 |
+
H57 T
|
| 59 |
+
H58 I
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 D
|
| 62 |
+
H61 P
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 D
|
| 67 |
+
H66 R
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 S
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 N
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 A
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 D
|
| 100 |
+
H96 T
|
| 101 |
+
H97 A
|
| 102 |
+
H98 A
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 F
|
| 105 |
+
H101 D
|
| 106 |
+
H102 Y
|
| 107 |
+
H103 W
|
| 108 |
+
H104 G
|
| 109 |
+
H105 Q
|
| 110 |
+
H106 G
|
| 111 |
+
H107 T
|
| 112 |
+
H108 L
|
| 113 |
+
H109 V
|
| 114 |
+
H110 T
|
| 115 |
+
H111 V
|
| 116 |
+
H112 S
|
| 117 |
+
H113 S
|
sabdab_dataset/1jps/annotation/1jps_L_VL.ann
ADDED
|
@@ -0,0 +1,110 @@
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|
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|
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|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 R
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 K
|
| 31 |
+
L31 S
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 L
|
| 34 |
+
L34 N
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 V
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 Y
|
| 51 |
+
L51 A
|
| 52 |
+
L52 T
|
| 53 |
+
L53 S
|
| 54 |
+
L54 L
|
| 55 |
+
L55 A
|
| 56 |
+
L56 E
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 Y
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 L
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 H
|
| 92 |
+
L92 G
|
| 93 |
+
L93 E
|
| 94 |
+
L94 S
|
| 95 |
+
L95 P
|
| 96 |
+
L96 W
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 Q
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 V
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 T
|
| 110 |
+
L110 V
|
sabdab_dataset/1jps/imgt/1jps_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*03 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 4 |
+
V Homo_sapiens IGHV3-43*02 IG IGHV IGHV3 IGHV3-43 NA True
|
sabdab_dataset/1jps/imgt/1jps_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Homo_sapiens IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Homo_sapiens IGKV1-39*01 IG IGKV IGKV1 IGKV1-39 NA True
|
sabdab_dataset/1jps/sequence/1jps_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jps_H|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
|
| 3 |
+
>1jps_H|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSS------------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jps_H|structure|full
|
| 6 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSSASTKGPSVFPLAPS----SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP--------
|
sabdab_dataset/1jps/sequence/1jps_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jps_L|seqres|full
|
| 2 |
+
DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 3 |
+
>1jps_L|seqres|region: L
|
| 4 |
+
DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTV--------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1jps_L|structure|full
|
| 6 |
+
DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE-
|
sabdab_dataset/1jps/sequence/1jps_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1jps_H|type: H
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
|
| 3 |
+
>1jps_L|type: L
|
| 4 |
+
DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 5 |
+
>1jps_T|type: non-ab
|
| 6 |
+
SGTTNTVAAYNLTWKSTNFKTILEWEPKPVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKSSSSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVECMGQEKGEFRE
|