RyoMurakami commited on
Commit
e12656e
·
verified ·
1 Parent(s): 61faf65

Update data card: corrected eSAF gain stats and known-issues notes

Browse files
Files changed (1) hide show
  1. README.md +20 -9
README.md CHANGED
@@ -107,8 +107,10 @@ and `..._ref.png` (each `.mat` holds the raw RF, the in-plane DAS, the metadata
107
  the eSAF output produced with the published algorithm `../matlab/saf/safrot_backproj.m`:
108
  in-plane DAS → `recon_3d` → `safrot_backproj`, f-number 45/8). A FWHM-vs-depth
109
  overview across probes is `sim_dataset_out/dataset_overview_r4.png`
110
- (`../sim/dataset_overview.m`). (`.mat`/`.hdf5` are git-ignored; the zea `.hdf5` set
111
- plus these `.mat`/`_ref.png` are delivered via Drive/S3.)
 
 
112
 
113
  ## Dataset Quantification
114
  - **Acquisitions:** **195** = **190 simulated** + **5 measured phantom**.
@@ -166,13 +168,22 @@ images and a FWHM-vs-depth overview accompany the MATLAB `.mat` release
166
  - **Paired SAF label — on-axis targets (r0 = 0) do not narrow, by design.** eSAF
167
  refocuses the *rotational elevation smear*; a target sitting on the rotation axis has
168
  essentially no smear, so its `saf_bmode_volume` is not sharper than the input (arc-FWHM
169
- gain < 1). This is expected physics, not a defect — the 40 on-axis cases (median gain
170
- ~0.5×) are included so the pair covers the degenerate no-smear case. Off-axis targets
171
- away from the 45 mm focus improve most (median ~1.35×; up to ~5–9×); targets at the
172
- focal depth (~45 mm) and weak-elevation-focus probes (`efocus_deep_90`, `elev_unfocused`)
173
- have little smear to recover. The eSAF back-projection uses a fixed elevational focus
174
- of 45 mm; per-depth focus tuning (see `../docs/eSAF_focus_depth_study_JP.md`) can further
175
- sharpen deep off-axis cases but was not applied here (single as-designed focus).
 
 
 
 
 
 
 
 
 
176
  - **Simulated** data (Field II spatial-impulse-response model): realistic transducer
177
  field, but no tissue attenuation, aberration, multiple scattering, or electronic
178
  noise. Not a substitute for measured data.
 
107
  the eSAF output produced with the published algorithm `../matlab/saf/safrot_backproj.m`:
108
  in-plane DAS → `recon_3d` → `safrot_backproj`, f-number 45/8). A FWHM-vs-depth
109
  overview across probes is `sim_dataset_out/dataset_overview_r4.png`
110
+ (`../sim/dataset_overview.m`). The zea `.hdf5` acquisitions are **hosted on Hugging
111
+ Face** at <https://huggingface.co/datasets/RyoMurakami/OpenH-RF-eSAF> (git-LFS; not
112
+ committed to the GitHub code repo). The MATLAB `.mat`/`_ref.png` intermediates are
113
+ reproducible from source and kept on lab storage.
114
 
115
  ## Dataset Quantification
116
  - **Acquisitions:** **195** = **190 simulated** + **5 measured phantom**.
 
168
  - **Paired SAF label — on-axis targets (r0 = 0) do not narrow, by design.** eSAF
169
  refocuses the *rotational elevation smear*; a target sitting on the rotation axis has
170
  essentially no smear, so its `saf_bmode_volume` is not sharper than the input (arc-FWHM
171
+ gain 1). This is expected physics, not a defect — the 40 on-axis cases (median gain
172
+ 1.00×) are included so the pair covers the degenerate no-smear case. Off-axis targets
173
+ (n=120, median gain 1.75×, up to ~12×) and paired/oblique targets (n=30, median 3.71×)
174
+ improve clearly; targets at the focal depth (~45 mm) and weak-elevation-focus probes
175
+ (`efocus_deep_90`, `elev_unfocused`) have less smear to recover. Across all 195 cases,
176
+ median arc-FWHM gain is 1.36× (42 cases < 1×, mostly the on-axis/near-focus group above).
177
+ Arc-FWHM is measured on a **centred** reconstruction: the smear circle passes through both
178
+ the rotation axis and the target (not a circle centred on the rotation axis). The eSAF
179
+ back-projection uses a fixed elevational focus of 45 mm; per-depth focus tuning (see
180
+ `../docs/eSAF_focus_depth_study_JP.md`) can further sharpen deep off-axis cases but was
181
+ not applied here (single as-designed focus).
182
+ - **Measured phantom depth window.** The real reflector bead sits **~4 mm off the rotation
183
+ axis** (not on-axis) and, for each scan, slightly deeper than the folder's nominal depth
184
+ label; labels are reconstructed over the interactively-identified reflector depth window
185
+ (not a naive nominal-depth ± 2 mm window), which matters because a mis-centred window can
186
+ pick up near-axis clutter instead of the actual bead.
187
  - **Simulated** data (Field II spatial-impulse-response model): realistic transducer
188
  field, but no tissue attenuation, aberration, multiple scattering, or electronic
189
  noise. Not a substitute for measured data.