File size: 3,962 Bytes
eb2c013
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
{
  "1": "Segmental tubular bronchiectasis in both lungs",
  "finding_id": 1,
  "mask_stats": [
    {
      "z_span": [
        185,
        220
      ],
      "max_area_slice_index": 209,
      "bbox_xyxy": [
        130,
        242,
        201,
        343
      ],
      "max_area": 5300,
      "total_voxels": 123317,
      "num_slices_with_mask": 36,
      "entity_index": 0,
      "entity_value": 1,
      "selected_slices": [
        97,
        118,
        138,
        159,
        191,
        209,
        221,
        242,
        262,
        283,
        304,
        324,
        345,
        366,
        386,
        407
      ],
      "hit_slices": [
        191,
        209
      ],
      "hit_slices_info": {
        "191": {
          "area": 3388,
          "bbox_xyxy": [
            149,
            271,
            214,
            335
          ],
          "entity_value": 1,
          "used_fallback_union": false
        },
        "209": {
          "area": 5300,
          "bbox_xyxy": [
            130,
            242,
            201,
            343
          ],
          "entity_value": 1,
          "used_fallback_union": false
        }
      },
      "is_hit": 1,
      "export_source_csv": "/home/deeplearning/data/data2/wzc/LLM4SAM/Final_data_process_pipeline/data/ct_data_ori_npy_multi_finding/retrieval_by_mask_results_train_even_spacing/report_multi_mask_even_spacing_maxE3_ratio0.9_smooth9_minGap1.csv"
    },
    {
      "z_span": [
        180,
        230
      ],
      "max_area_slice_index": 191,
      "bbox_xyxy": [
        286,
        227,
        350,
        322
      ],
      "max_area": 4498,
      "total_voxels": 145402,
      "num_slices_with_mask": 51,
      "entity_index": 1,
      "entity_value": 2,
      "selected_slices": [
        97,
        118,
        138,
        159,
        191,
        209,
        221,
        242,
        262,
        283,
        304,
        324,
        345,
        366,
        386,
        407
      ],
      "hit_slices": [
        191,
        209,
        221
      ],
      "hit_slices_info": {
        "191": {
          "area": 4498,
          "bbox_xyxy": [
            286,
            227,
            350,
            322
          ],
          "entity_value": 2,
          "used_fallback_union": false
        },
        "209": {
          "area": 3098,
          "bbox_xyxy": [
            293,
            259,
            368,
            317
          ],
          "entity_value": 2,
          "used_fallback_union": false
        },
        "221": {
          "area": 2145,
          "bbox_xyxy": [
            299,
            261,
            351,
            321
          ],
          "entity_value": 2,
          "used_fallback_union": false
        }
      },
      "is_hit": 1,
      "export_source_csv": "/home/deeplearning/data/data2/wzc/LLM4SAM/Final_data_process_pipeline/data/ct_data_ori_npy_multi_finding/retrieval_by_mask_results_train_even_spacing/report_multi_mask_even_spacing_maxE3_ratio0.9_smooth9_minGap1.csv"
    }
  ],
  "meta": {
    "case": "train_2100_a_2.nii.gz",
    "split": "train"
  },
  "accepted_seeds": [
    {
      "mask_idx": 0,
      "seed_slice": 209,
      "max_area": 5300.0,
      "replaced_slice": 200
    },
    {
      "mask_idx": 1,
      "seed_slice": 191,
      "max_area": 4498.0,
      "replaced_slice": 180
    }
  ],
  "dropped_seeds": [],
  "export_summary": {
    "num_masks": 2,
    "hit_mask_count": 2,
    "is_hit_any": 1,
    "selected_slices": [
      97,
      118,
      138,
      159,
      191,
      209,
      221,
      242,
      262,
      283,
      304,
      324,
      345,
      366,
      386,
      407
    ],
    "export_source_csv": "/home/deeplearning/data/data2/wzc/LLM4SAM/Final_data_process_pipeline/data/ct_data_ori_npy_multi_finding/retrieval_by_mask_results_train_even_spacing/report_multi_mask_even_spacing_maxE3_ratio0.9_smooth9_minGap1.csv"
  }
}