import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D from read_node import read_dat_file, read_result_file import os import numpy as np import pyvista as pv from scipy.spatial import distance_matrix """ folder_path = r"D:\AnK\FatigueNet\Fatigue_Life\datasets\Raw data\shaft_high\life_D15_d5_r1" folder_base_name = os.path.basename(folder_path).replace("_data", "") dat_file_path = os.path.join(folder_path, f"{folder_base_name}.dat") fatigue_life_path = os.path.join(folder_path, f"{folder_base_name}.txt") positions, connectivity = read_dat_file(dat_file_path) positions = np.array(positions) connectivity = np.array(connectivity) # Calculate appropriate sphere size based on point density # Find minimum distance between points to avoid overlap from scipy.spatial.distance import pdist distances = pdist(positions) min_distance = np.min(distances) max_distance = np.max(distances) print(f"Min distance between points: {min_distance:.6f}") print(f"Max distance between points: {max_distance:.6f}") # Matplotlib version (for comparison) x = positions[:, 0] y = positions[:, 1] z = positions[:, 2] fig = plt.figure(figsize=(10, 8)) ax = fig.add_subplot(111, projection='3d') ax.scatter(x, y, z, c='red', s=50, alpha=0.8) ax.set_xlabel('X') ax.set_ylabel('Y') ax.set_zlabel('Z') ax.set_title('3D Points Visualization - Matplotlib') ax.grid(True) plt.show() """ #......................................................................................................................................................................................... #......................................................................................................................................................................................... """ import os import numpy as np import pyvista as pv from scipy.spatial.distance import pdist from read_node import read_dat_file # === Load dataset === folder_path = r"D:\AnK\FatigueNet\Fatigue_Life\datasets\Raw data\shaft_high\life_D15_d5_r1" folder_base_name = os.path.basename(folder_path).replace("_data", "") dat_file_path = os.path.join(folder_path, f"{folder_base_name}.dat") # Read point positions positions, connectivity = read_dat_file(dat_file_path) #print(connectivity) #print(positions) positions = np.array(positions) connectivity = np.array(connectivity) # === Compute spacing metrics === distances = pdist(positions) min_distance = np.min(distances) max_distance = np.max(distances) print(f"Min distance between points: {min_distance:.6f}") print(f"Max distance between points: {max_distance:.6f}") # === Create PyVista point cloud === point_cloud = pv.PolyData(positions) # === Option A: Use glyphs (spheres) for geometric visualization === # Choose adaptive sphere size sphere_radius = min_distance * 0.35 # 10% of min spacing sphere = pv.Sphere(radius=sphere_radius) # Attach dummy scalar field (optional, for glyph binding) point_cloud["id"] = np.arange(len(positions)) # Generate glyphs glyphs = point_cloud.glyph(geom=sphere, scale=False) # === PyVista Plot === plotter = pv.Plotter() plotter.add_mesh(glyphs, color="red", opacity=1.0, show_scalar_bar=False) # Add axes and grid plotter.add_axes() plotter.show_grid() plotter.set_background("white") plotter.add_title("3D Point Cloud - PyVista (Spheres)") # Display plotter.show() """ #......................................................................................................................................................................................... #......................................................................................................................................................................................... """ import os import numpy as np import pyvista as pv from scipy.spatial.distance import pdist from read_node import read_dat_file, read_result_file # Make sure these are available # === Load dataset === folder_path = r"D:\AnK\FatigueNet\Fatigue_Life\datasets\Raw data\shaft_high\life_D15_d5_r1" folder_base_name = os.path.basename(folder_path).replace("_data", "") dat_file_path = os.path.join(folder_path, f"{folder_base_name}.dat") fatigue_life_path = os.path.join(folder_path, f"{folder_base_name}.txt") positions, connectivity = read_dat_file(dat_file_path) #print(connectivity) #print(positions) positions = np.array(positions) connectivity = np.array(connectivity) fatigue_life = np.array(read_result_file(fatigue_life_path)) assert positions.shape[0] == fatigue_life.shape[0], "Mismatch between points and fatigue data!" # === Compute spacing metrics === distances = pdist(positions) min_distance = np.min(distances) max_distance = np.max(distances) print(f"Min distance between points: {min_distance:.6f}") print(f"Max distance between points: {max_distance:.6f}") # === Create point cloud and attach fatigue life === point_cloud = pv.PolyData(positions) point_cloud["fatigue_life"] = fatigue_life # <-- this is used for coloring point_cloud["fatigue_life"] = np.log10(fatigue_life + 1e-12) # comment this if you want the absolute mapping of the life on nodes # === Create glyphs (spheres) === sphere_radius = min_distance * 0.35 sphere = pv.Sphere(radius=sphere_radius) glyphs = point_cloud.glyph(geom=sphere, scale=False) # === PyVista plot === plotter = pv.Plotter() plotter.add_mesh(glyphs, scalars="fatigue_life", cmap="viridis", # or try "plasma", "coolwarm", "inferno" opacity=1.0, show_scalar_bar=True) plotter.add_axes() plotter.show_grid() plotter.set_background("white") plotter.add_title("3D Point Cloud Colored by Fatigue Life") plotter.show() """ #......................................................................................................................................................................................... # visualization with connectivity #......................................................................................................................................................................................... import os import numpy as np import pyvista as pv from scipy.spatial.distance import pdist from read_node import read_dat_file, read_result_file # Make sure these are available # === Load dataset === folder_path = r"D:\AnK\FatigueNet\Fatigue_Life\Visuize\life_D15_d5_r2" folder_base_name = os.path.basename(folder_path).replace("_data", "") dat_file_path = os.path.join(folder_path, f"{folder_base_name}.dat") fatigue_life_path = os.path.join(folder_path, f"{folder_base_name}.txt") positions, connectivity = read_dat_file(dat_file_path) #print(connectivity) #print(positions) positions = np.array(positions) connectivity = np.array(connectivity) fatigue_life = np.array(read_result_file(fatigue_life_path)) # Convert connectivity to VTK format for unstructured grid n_elements = len(connectivity) cell_types = np.full(n_elements, pv.CellType.TETRA, dtype=np.uint8) if np.min(connectivity) > 0: connectivity -= 1 # Format: [n_points, pt1, pt2, pt3, pt4, ...] cells = [] for conn in connectivity: cells.append(4) cells.extend(conn) cells = np.array(cells) # Build unstructured grid grid = pv.UnstructuredGrid(cells, cell_types, positions) # Attach fatigue life as point data grid["fatigue_life"] = fatigue_life # Plot plotter = pv.Plotter() plotter.add_mesh(grid, scalars="fatigue_life", cmap="viridis_r", show_edges=True) plotter.add_axes() plotter.show_grid() plotter.set_background("white") plotter.add_title("Fatigue Mesh Visualization (Connected Elements)") plotter.show()