Initial release: dependency-free reference implementation, conformance vectors, closed-form null model
5305b07 verified Download data/null_model_reference.json from SalutefaceAAC/synthidbio-sequence-pilot: direct link, hf CLI and curl.
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https://huggingface.co/datasets/SalutefaceAAC/synthidbio-sequence-pilot/resolve/main/data/null_model_reference.json
- Command line
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hf download hf://datasets/SalutefaceAAC/synthidbio-sequence-pilot/data/null_model_reference.json
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curl -L -o null_model_reference.json https://huggingface.co/datasets/SalutefaceAAC/synthidbio-sequence-pilot/resolve/main/data/null_model_reference.json
5.6 kB
| { | |
| "description": "Closed-form null statistics for each bundled sequence. corrected_se accounts for repeated 4-residue contexts, which the naive 0.5/sqrt(W*K) standard error ignores.", | |
| "keys": 25, | |
| "ngram": 4, | |
| "formula": "SE = 0.5 * sqrt(R/(W*K)), R = sum(m_i^2)/W", | |
| "rows": [ | |
| { | |
| "id": "5L33-baseline-1", | |
| "score": 0.5036893203883496, | |
| "z": 0.3744251257024371, | |
| "p_two_sided": 0.7080880525901443, | |
| "windows": 103, | |
| "distinct_contexts": 103, | |
| "repeated_contexts": 0, | |
| "repeat_inflation_R": 1.0, | |
| "effective_independent_bits": 2575.0, | |
| "null_mean": 0.5, | |
| "naive_se": 0.009853292781642932, | |
| "corrected_se": 0.009853292781642932, | |
| "null_threshold_p95": 0.5162072243693001, | |
| "null_threshold_p99": 0.522922186714877 | |
| }, | |
| { | |
| "id": "5L33-baseline-2", | |
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| "corrected_se": 0.009853292781642932, | |
| "null_threshold_p95": 0.5162072243693001, | |
| "null_threshold_p99": 0.522922186714877 | |
| }, | |
| { | |
| "id": "5L33-native", | |
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| "null_threshold_p99": 0.522922186714877 | |
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| } | |
| ] | |
| } | |