"""Generate benchmark splits: random, formula-grouped, family-held-out, chemistry-held-out.""" import json, random, os from pathlib import Path from collections import defaultdict random.seed(42) DATASET = Path(__file__).parent.parent / "dataset/entries_final_v3.json" SPLITS_DIR = Path(__file__).parent.parent / "dataset/splits" SPLITS_DIR.mkdir(parents=True, exist_ok=True) with open(DATASET) as f: entries = json.load(f) N = len(entries) # Group by formula for formula-held-out split formula_groups = defaultdict(list) for i, e in enumerate(entries): f = e.get("structured_formula") or e.get("formula", "") formula_groups[f].append(i) formulas = list(formula_groups.keys()) random.shuffle(formulas) n_formula = len(formulas) n_train_f = int(0.8 * n_formula) n_val_f = int(0.1 * n_formula) train_formulas = set(formulas[:n_train_f]) val_formulas = set(formulas[n_train_f:n_train_f + n_val_f]) test_formulas = set(formulas[n_train_f + n_val_f:]) comp_train = sorted(i for f in train_formulas for i in formula_groups[f]) comp_val = sorted(i for f in val_formulas for i in formula_groups[f]) comp_test = sorted(i for f in test_formulas for i in formula_groups[f]) # Validate no overlap assert len(set(comp_train) & set(comp_val)) == 0 assert len(set(comp_train) & set(comp_test)) == 0 assert len(set(comp_val) & set(comp_test)) == 0 assert len(comp_train) + len(comp_val) + len(comp_test) == N composition = { "type": "composition_held_out", "seed": 42, "train": comp_train, "val": comp_val, "test": comp_test, } with open(SPLITS_DIR / "composition_held_out.json", "w") as f: json.dump(composition, f, indent=2) print(f"composition_held_out: train={len(comp_train):,} val={len(comp_val):,} test={len(comp_test):,}") print(f" Unique formulas: train={len(train_formulas):,} val={len(val_formulas):,} test={len(test_formulas):,}") # Verify it's different from random import json with open(SPLITS_DIR / "random_80_10_10.json") as f: random_split = json.load(f) is_same = (random_split["train"] == comp_train and random_split["val"] == comp_val and random_split["test"] == comp_test) print(f" Different from random: {not is_same}")