"""Test basic dataset integrity: format, required fields, property ranges, splits.""" import json from pathlib import Path DATASET = Path(__file__).parent.parent / "dataset/entries_final_v3.json" def load_dataset(): with open(DATASET) as f: return json.load(f) _ENTRIES = None def get_entries(): global _ENTRIES if _ENTRIES is None: _ENTRIES = load_dataset() return _ENTRIES class TestDatasetIntegrity: def setup_method(self): self.entries = get_entries() self.N = len(self.entries) def test_dataset_not_empty(self): assert self.N > 0, "Dataset is empty" def test_all_entries_have_formula(self): missing = [e for e in self.entries if not e.get("formula")] assert len(missing) == 0, f"{len(missing)} entries missing formula" def test_all_entries_have_structured_formula(self): missing = [e for e in self.entries if not e.get("structured_formula")] assert len(missing) == 0, f"{len(missing)} entries missing structured_formula" def test_all_entries_have_elements(self): missing = [e for e in self.entries if not e.get("elements")] assert len(missing) == 0, f"{len(missing)} entries missing elements" def test_all_entries_have_source(self): missing = [e for e in self.entries if not e.get("source")] assert len(missing) == 0, f"{len(missing)} entries missing source" def test_all_entries_have_quality_score(self): missing = [e for e in self.entries if e.get("quality_score") is None] assert len(missing) == 0, f"{len(missing)} entries missing quality_score" def test_all_entries_have_tier(self): missing = [e for e in self.entries if not e.get("tier")] assert len(missing) == 0, f"{len(missing)} entries missing tier" def test_all_entries_have_provenance(self): missing = [e for e in self.entries if not e.get("provenance")] assert len(missing) == 0, f"{len(missing)} entries missing provenance" def test_quality_score_range(self): scores = [e.get("quality_score", 0) for e in self.entries] assert all(0 <= s <= 100 for s in scores), "Quality score out of [0, 100]" def test_volume_non_negative(self): volumes = [e.get("volume", -1) for e in self.entries] assert all(v > 0 for v in volumes), f"{sum(1 for v in volumes if v <= 0)} entries with volume <= 0" def test_density_non_negative(self): densities = [e.get("density", -1) for e in self.entries] assert all(d >= 0 for d in densities), f"{sum(1 for d in densities if d < 0)} entries with density < 0" def test_known_sources(self): sources = set(e.get("source") for e in self.entries) assert sources <= {"mp", "oqmd", "jarvis"}, f"Unknown sources: {sources - {'mp', 'oqmd', 'jarvis'}}" def test_known_tiers(self): tiers = set(e.get("tier") for e in self.entries) assert tiers <= {"gold", "validated", "raw"}, f"Unknown tiers: {tiers - {'gold', 'validated', 'raw'}}" def test_no_stale_missing_spacegroup_flags(self): stale = [e for e in self.entries if e.get("source") == "oqmd" and e.get("space_group") is not None and "missing_spacegroup" in e.get("quality_flags", [])] assert len(stale) == 0, f"{len(stale)} OQMD entries have stale missing_spacegroup flag" def test_gold_tier_no_extreme_fe(self): extreme = [e for e in self.entries if e.get("tier") == "gold" and e.get("formation_energy_per_atom") is not None and abs(e.get("formation_energy_per_atom")) > 5] assert len(extreme) == 0, f"{len(extreme)} Gold entries have |FE| > 5 eV/atom" def test_gold_tier_no_extreme_eah(self): extreme = [e for e in self.entries if e.get("tier") == "gold" and e.get("energy_above_hull") is not None and e.get("energy_above_hull") > 5] assert len(extreme) == 0, f"{len(extreme)} Gold entries have EaH > 5 eV/atom" def test_tier_distribution(self): tiers = {} for e in self.entries: tiers[e.get("tier")] = tiers.get(e.get("tier"), 0) + 1 assert tiers.get("gold", 0) > 0, "No Gold entries" assert tiers.get("validated", 0) > 0, "No Validated entries" def test_source_distribution(self): for src in ["mp", "oqmd", "jarvis"]: cnt = sum(1 for e in self.entries if e.get("source") == src) assert cnt > 0, f"Source {src} has 0 entries" def test_splits_distinct(self): import json base = Path(__file__).parent.parent / "dataset/splits" splits = {} for name in ["random_80_10_10", "composition_held_out", "family_held_out", "chemistry_held_out"]: with open(base / f"{name}.json") as f: splits[name] = json.load(f) assert splits["random_80_10_10"]["train"] != splits["composition_held_out"]["train"], \ "composition_held_out is identical to random_80_10_10 — split bug" def test_splits_no_overlap(self): import json base = Path(__file__).parent.parent / "dataset/splits" for name in ["random_80_10_10", "composition_held_out", "family_held_out", "chemistry_held_out"]: with open(base / f"{name}.json") as f: sp = json.load(f) train_s = set(sp["train"]) val_s = set(sp["val"]) test_s = set(sp["test"]) assert len(train_s & val_s) == 0, f"{name}: train/val overlap" assert len(train_s & test_s) == 0, f"{name}: train/test overlap" assert len(val_s & test_s) == 0, f"{name}: val/test overlap"