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@prefix : <https://w3id.org/emmo/domain/atomistic |
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@prefix owl: <http://www.w3.org/2002/07/owl |
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns |
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@prefix xml: <http://www.w3.org/XML/1998/namespace> . |
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@prefix xsd: <http://www.w3.org/2001/XMLSchema |
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@prefix core: <http://www.w3.org/2004/02/skos/core |
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@prefix emmo: <http://emmo.info/emmo |
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema |
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@prefix term: <http://purl.org/dc/terms/> . |
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@base <https://w3id.org/emmo/domain/atomistic |
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<https://w3id.org/emmo/domain/atomistic> rdf:type owl:Ontology ; |
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owl:versionIRI <https://w3id.org/emmo/domain/atomistic/0.0.2> ; |
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owl:imports <https://w3id.org/emmo/1.0.0/> ; |
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term:abstract "An EMMO-based domain ontology for atomistic and electronic modelling.Atomistic is released under the Creative Commons Attribution 4.0 International license (CC BY 4.0)."@en ; |
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term:contributor "SINTEF"@en ; |
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term:creator "Francesca L. Bleken"@en , |
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"Jesper Friis"@en ; |
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term:publisher "EMMC ASBL"@en ; |
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term:title "Atomistic"@en ; |
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rdfs:comment """Contacts: |
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Jesper Friis |
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SINTEF |
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email: jesper.friis@sintef.no |
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Francesca L. Bleken |
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SINTEF |
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email: francesca.l.bleken@sintef.no"""@en , |
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"The EMMO requires FaCT++ reasoner plugin in order to visualize allinferences and class hierarchy (ctrl+R hotkey in Protege)."@en , |
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"This ontology is generated with data from the ASE Python package."@en ; |
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owl:versionInfo "0.0.1"@en ; |
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<https://w3id.org/emmo#EMMO_5525a055_dda5_4556_8b91_f0d22fa676cc> "https://creativecommons.org/licenses/by/4.0/legalcode"@en . |
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################################################################# |
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# Annotation properties |
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################################################################# |
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### https://w3id.org/emmo#EMMO_21ae69b4_235e_479d_8dd8_4f756f694c1b |
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<https://w3id.org/emmo#EMMO_21ae69b4_235e_479d_8dd8_4f756f694c1b> rdf:type owl:AnnotationProperty . |
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### https://w3id.org/emmo#EMMO_5525a055_dda5_4556_8b91_f0d22fa676cc |
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<https://w3id.org/emmo#EMMO_5525a055_dda5_4556_8b91_f0d22fa676cc> rdf:type owl:AnnotationProperty . |
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### https://w3id.org/emmo#EMMO_de178b12_5d35_4bca_8efa_a4193162571d |
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<https://w3id.org/emmo#EMMO_de178b12_5d35_4bca_8efa_a4193162571d> rdf:type owl:AnnotationProperty . |
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################################################################# |
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# Object Properties |
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################################################################# |
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### https://w3id.org/emmo/domain/atomistic#EMMO_c2da4973_b83d_4581_a4b4_87ab401b8f5b |
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:EMMO_c2da4973_b83d_4581_a4b4_87ab401b8f5b rdf:type owl:ObjectProperty ; |
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rdfs:subPropertyOf <https://w3id.org/emmo#EMMO_8e52c42b_e879_4473_9fa1_4b23428b392b> ; |
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rdfs:domain <https://w3id.org/emmo#EMMO_a96e2152_40e7_409c_a53a_fdb9f141eb6a> ; |
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rdfs:range <https://w3id.org/emmo#EMMO_21205421_5783_4d3e_81e5_10c5d894a88a> ; |
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core:prefLabel "hasSpecies"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "Relates a material to the species it is made of."@en ; |
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<https://w3id.org/emmo#EMMO_c7b62dd7_063a_4c2a_8504_42f7264ba83f> "Intended for documeting what kind of atoms a material is made of."@en . |
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### https://w3id.org/emmo/domain/atomistic#42812fef-145a-56e9-9c18-72bd32214455 |
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<https://w3id.org/emmo/domain/atomistic#42812fef-145a-56e9-9c18-72bd32214455> rdf:type owl:ObjectProperty ; |
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rdfs:subPropertyOf <https://w3id.org/emmo#EMMO_e1097637_70d2_4895_973f_2396f04fa204> ; |
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rdfs:domain <https://w3id.org/emmo#EMMO_f6d0c26a_98b6_4cf8_8632_aa259131faaa> ; |
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core:prefLabel "hasEigenvalue"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "Relates a mathematical (or physical) operator to its eigenvalue."@en . |
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################################################################# |
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# Classes |
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################################################################# |
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### https://w3id.org/emmo/domain/atomistic#EMMO_070efd9c_b971_44ee_bd45_8c548a80a65d |
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:EMMO_070efd9c_b971_44ee_bd45_8c548a80a65d rdf:type owl:Class ; |
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rdfs:subClassOf :EMMO_3cd827b2_e9c6_4d08_a215_d22fd2a46298 ; |
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core:example "LAMMPS"@en ; |
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core:prefLabel "ForceFieldSimulationSoftware"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "Forcefield-based simulation software."@en . |
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### https://w3id.org/emmo/domain/atomistic#EMMO_3cd827b2_e9c6_4d08_a215_d22fd2a46298 |
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:EMMO_3cd827b2_e9c6_4d08_a215_d22fd2a46298 rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_8d4962d7_9608_44f7_a2f1_82a4bb173f4a> ; |
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core:example "NWChem - a physical based software that implements both DFT and higher order QM methods."@en ; |
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core:prefLabel "AtomisticSimulationSoftware"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "The superclass of physical-based electronic and forcefield simulation softwares."@en . |
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### https://w3id.org/emmo/domain/atomistic#EMMO_429430f4_00e9_4157_a636_6cf798139e40 |
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:EMMO_429430f4_00e9_4157_a636_6cf798139e40 rdf:type owl:Class ; |
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rdfs:subClassOf :EMMO_3cd827b2_e9c6_4d08_a215_d22fd2a46298 ; |
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core:example "VASP, Quantum ESPRESSO, NWChem "@en ; |
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core:prefLabel "DFTSimulationSoftware"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "DFT-based simulation software."@en . |
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### https://w3id.org/emmo/domain/atomistic#EMMO_52a6103f_86a4_4710_9028_a49b4cef858e |
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:EMMO_52a6103f_86a4_4710_9028_a49b4cef858e rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_5dd63d84_57f5_4b79_b760_fe940c06680d> ; |
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core:prefLabel "DFTComputation"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "A computation that solves the Kohn-Sham equation (using DFT)."@en . |
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### https://w3id.org/emmo/domain/atomistic#acaafcb6-b65f-5996-93ed-2f486f5f2b30 |
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:acaafcb6-b65f-5996-93ed-2f486f5f2b30 rdf:type owl:Class ; |
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rdfs:subClassOf :c4dd4450-cc80-5de4-a8d6-db0651115a2c ; |
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core:prefLabel "TimeIndependentSchrodingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_21ae69b4_235e_479d_8dd8_4f756f694c1b> "TimeIndependentSchrödingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> """If the external potential does not depende on time, the Schrödinger |
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equation can be reduced to this time-independent form."""@en . |
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### https://w3id.org/emmo/domain/atomistic#b65fe3b6-8477-5508-a066-2f7edcf25126 |
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:b65fe3b6-8477-5508-a066-2f7edcf25126 rdf:type owl:Class ; |
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rdfs:subClassOf :acaafcb6-b65f-5996-93ed-2f486f5f2b30 , |
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[ rdf:type owl:Restriction ; |
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owl:onProperty <https://w3id.org/emmo#EMMO_b2282816_b7a3_44c6_b2cb_3feff1ceb7fe> ; |
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owl:someValuesFrom <https://w3id.org/emmo#EMMO_5cbb7bfb_7ab8_4151_8ed1_13a5b7d5caa4> |
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] ; |
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rdfs:comment "This is the equation that is solved with density functional theory." ; |
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core:prefLabel "KohnShamEquation"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "The Schrödinger equation for a fictious \"Kohn-Sham\" system of non-interacting electrons that generates the same charge density as the real interacting system."@en . |
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### https://w3id.org/emmo/domain/atomistic#c4dd4450-cc80-5de4-a8d6-db0651115a2c |
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:c4dd4450-cc80-5de4-a8d6-db0651115a2c rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_27c5d8c6_8af7_4d63_beb1_ec37cd8b3fa3> , |
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[ rdf:type owl:Restriction ; |
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owl:onProperty <https://w3id.org/emmo#EMMO_b2282816_b7a3_44c6_b2cb_3feff1ceb7fe> ; |
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owl:someValuesFrom <https://w3id.org/emmo#EMMO_31ec09ba_1713_42cb_83c7_b38bf6f9ced2> |
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] , |
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[ rdf:type owl:Restriction ; |
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owl:onProperty <https://w3id.org/emmo#EMMO_b2282816_b7a3_44c6_b2cb_3feff1ceb7fe> ; |
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owl:someValuesFrom :df750ce7-fda1-5e9b-ba32-db96ec170577 |
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] , |
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[ rdf:type owl:Restriction ; |
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owl:onProperty <https://w3id.org/emmo#EMMO_b2282816_b7a3_44c6_b2cb_3feff1ceb7fe> ; |
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owl:someValuesFrom <https://w3id.org/emmo/domain/atomistic#42244404-98d1-582a-8fc0-3cdd2a9b3df6> |
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] ; |
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core:prefLabel "SchrodingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_21ae69b4_235e_479d_8dd8_4f756f694c1b> "SchrödingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> """A linear partial differential equation describing the wave |
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function of a quantum-mechanical system. |
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The exact form of the Schrödinger equation depends on the |
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physical situation. The most general form is the |
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time-dependent Schrödinger equation."""@en ; |
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<https://w3id.org/emmo#EMMO_c84c6752_6d64_48cc_9500_e54a3c34898d> "https://en.wikipedia.org/wiki/Schr%C3%B6dinger_equation" . |
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### https://w3id.org/emmo/domain/atomistic#df750ce7-fda1-5e9b-ba32-db96ec170577 |
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:df750ce7-fda1-5e9b-ba32-db96ec170577 rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_a66427d1_9932_4363_9ec5_7d91f2bfda1e> ; |
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core:prefLabel "WaveFunction"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> """A mathematical description of the quantum state of an isolated |
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quantum system. A wave function is a function of the degrees |
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of freedom corresponding to some maximal set of commuting |
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observables. Once such a representation is chosen, the wave |
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function can be derived from the quantum state."""@en ; |
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<https://w3id.org/emmo#EMMO_c84c6752_6d64_48cc_9500_e54a3c34898d> "https://en.wikipedia.org/wiki/Wave_function" ; |
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<https://w3id.org/emmo#EMMO_de178b12_5d35_4bca_8efa_a4193162571d> "T0 L0 M0 I0 Θ0 N0 J0" . |
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### https://w3id.org/emmo/domain/atomistic#fac61002-4a3d-5810-a430-ad5dad69c9a0 |
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:fac61002-4a3d-5810-a430-ad5dad69c9a0 rdf:type owl:Class ; |
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rdfs:subClassOf :c4dd4450-cc80-5de4-a8d6-db0651115a2c ; |
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core:prefLabel "TimeDependentSchrodingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_21ae69b4_235e_479d_8dd8_4f756f694c1b> "TimeDependentSchrödingerEquation"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "The full time-dependent Schrödinger equation."@en . |
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### https://w3id.org/emmo/domain/atomistic#08fd7117-66ac-5b6d-b65e-34a826675877 |
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<https://w3id.org/emmo/domain/atomistic#08fd7117-66ac-5b6d-b65e-34a826675877> rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_f6d0c26a_98b6_4cf8_8632_aa259131faaa> ; |
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core:prefLabel "PhysicalOperator"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> "A mathematical operator with a physical interpretation."@en . |
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### https://w3id.org/emmo/domain/atomistic#42244404-98d1-582a-8fc0-3cdd2a9b3df6 |
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<https://w3id.org/emmo/domain/atomistic#42244404-98d1-582a-8fc0-3cdd2a9b3df6> rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_6f5af708_f825_4feb_a0d1_a8d813d3022b> , |
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<https://w3id.org/emmo/domain/atomistic#08fd7117-66ac-5b6d-b65e-34a826675877> , |
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[ rdf:type owl:Restriction ; |
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owl:onProperty <https://w3id.org/emmo/domain/atomistic#42812fef-145a-56e9-9c18-72bd32214455> ; |
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owl:someValuesFrom <https://w3id.org/emmo#EMMO_31ec09ba_1713_42cb_83c7_b38bf6f9ced2> |
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] ; |
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core:prefLabel "Hamiltonian"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> """An operator corresponding to the sum of the kinetic energies plus |
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the potential energies for all the particles in the system."""@en . |
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### https://w3id.org/emmo/domain/atomistic#83a69cf2-00c1-58b8-915b-76cb3549890a |
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<https://w3id.org/emmo/domain/atomistic#83a69cf2-00c1-58b8-915b-76cb3549890a> rdf:type owl:Class ; |
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rdfs:subClassOf <https://w3id.org/emmo#EMMO_6eca09be_17e9_445e_abc9_000aa61b7a11> ; |
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core:prefLabel "DensityFunctionalTheory"@en ; |
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<https://w3id.org/emmo#EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9> """An efficient computional method for solving the many-electron |
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(time-independent) Schrödinger equation."""@en . |
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### Generated by the OWL API (version 4.5.26.2023-07-17T20:34:13Z) https://github.com/owlcs/owlapi |
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