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SMART Protocols Ontology: Workflow Module (SP-Workflow)
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Overview
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SP-Workflow module represents: i) the executable elements of a protocol; ii) the experimental actions
and material entities that participates in instructions (sample/specimen, organisms, reagents,
instruments); and iii) the order of execution of the instructions.
:Domain: Scholarly Knowledge
:Category: Workflows
:Current Version: 4.0
:Last Updated: 2013-07-01
:Creator: http://oxgiraldo.wordpress.com
:License: Creative Commons Attribution 4.0 International (CC BY 4.0)
:Format: OWL
:Download: `SMART Protocols Ontology: Workflow Module (SP-Workflow) Homepage <https://github.com/SMARTProtocols/SMART-Protocols>`_
Graph Metrics
-------------
- **Total Nodes**: 1446
- **Total Edges**: 3017
- **Root Nodes**: 4
- **Leaf Nodes**: 834
Knowledge coverage
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- Classes: 419
- Individuals: 5
- Properties: 17
Hierarchical metrics
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- **Maximum Depth**: 13
- **Minimum Depth**: 0
- **Average Depth**: 7.23
- **Depth Variance**: 8.19
Breadth metrics
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- **Maximum Breadth**: 36
- **Minimum Breadth**: 3
- **Average Breadth**: 14.07
- **Breadth Variance**: 120.78
Dataset Statistics
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Generated Benchmarks:
- **Term Types**: 5
- **Taxonomic Relations**: 577
- **Non-taxonomic Relations**: 22
- **Average Terms per Type**: 1.00
Usage Example
-------------
.. code-block:: python
from ontolearner.ontology import SPWorkflow
# Initialize and load ontology
ontology = SPWorkflow()
ontology.load("path/to/ontology.OWL")
# Extract datasets
data = ontology.extract()
# Access specific relations
term_types = data.term_typings
taxonomic_relations = data.type_taxonomies
non_taxonomic_relations = data.type_non_taxonomic_relations
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