| Scientific Evidence and Provenance Information Ontology (SEPIO) |
| ======================================================================================================================== |
|
|
| Overview |
| -------- |
| The SEPIO ontology is in its early stages of development, undergoing iterative refinement |
| as new requirements emerge and alignment with existing standards is explored. The SEPIO core file imports two files |
| which can be resolved at the URLs below: |
| IAO ontology-metadata import: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/imports/ontology-metadata.owl |
| bfo mireot: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/mireots/bfo-mireot.owl |
|
|
| :Domain: Scholarly Knowledge |
| :Category: Scientific Evidence |
| :Current Version: None |
| :Last Updated: 2015-02-23 |
| :Creator: None |
| :License: Creative Commons 4.0 |
| :Format: OWL |
| :Download: `Scientific Evidence and Provenance Information Ontology (SEPIO) Homepage <https://terminology.tib.eu/ts/ontologies/SEPIO>`_ |
|
|
| Graph Metrics |
| ------------- |
| - **Total Nodes**: 1262 |
| - **Total Edges**: 2385 |
| - **Root Nodes**: 72 |
| - **Leaf Nodes**: 781 |
|
|
| Knowledge coverage |
| ------------------ |
| - Classes: 129 |
| - Individuals: 21 |
| - Properties: 117 |
|
|
| Hierarchical metrics |
| -------------------- |
| - **Maximum Depth**: 14 |
| - **Minimum Depth**: 0 |
| - **Average Depth**: 3.17 |
| - **Depth Variance**: 8.36 |
|
|
| Breadth metrics |
| ------------------ |
| - **Maximum Breadth**: 170 |
| - **Minimum Breadth**: 1 |
| - **Average Breadth**: 40.60 |
| - **Breadth Variance**: 2186.24 |
|
|
| Dataset Statistics |
| ------------------ |
| Generated Benchmarks: |
| - **Term Types**: 21 |
| - **Taxonomic Relations**: 141 |
| - **Non-taxonomic Relations**: 6 |
| - **Average Terms per Type**: 4.20 |
|
|
| Usage Example |
| ------------- |
| .. code-block:: python |
|
|
| from ontolearner.ontology import SEPIO |
|
|
| # Initialize and load ontology |
| ontology = SEPIO() |
| ontology.load("path/to/ontology.OWL") |
|
|
| # Extract datasets |
| data = ontology.extract() |
|
|
| # Access specific relations |
| term_types = data.term_typings |
| taxonomic_relations = data.type_taxonomies |
| non_taxonomic_relations = data.type_non_taxonomic_relations |
|
|
