Datasets:
Download scripts/verify_hf_package.py from SeanWan05/MolAS-Active-Learning: direct link, hf CLI and curl.
- Browser
- Download file 3.82 kB
-
https://huggingface.co/datasets/SeanWan05/MolAS-Active-Learning/resolve/main/scripts/verify_hf_package.py
- Command line
-
hf download hf://datasets/SeanWan05/MolAS-Active-Learning/scripts/verify_hf_package.py
-
curl -L -o verify_hf_package.py https://huggingface.co/datasets/SeanWan05/MolAS-Active-Learning/resolve/main/scripts/verify_hf_package.py
3.82 kB
| #!/usr/bin/env python3 | |
| """Verify the complete local HF payload; never upload, train, dock, or unpickle.""" | |
| from __future__ import annotations | |
| import argparse | |
| import csv | |
| import hashlib | |
| import json | |
| from pathlib import Path | |
| import sys | |
| EXCLUDED = {'provenance/repository_files.json', 'provenance/final_verification.json', 'SHA256SUMS'} | |
| IGNORED_PARTS = {'.git', '.cache', '__pycache__', '.venv', 'outputs', 'scratch'} | |
| def files(root): | |
| return {p.relative_to(root).as_posix(): p for p in root.rglob('*') | |
| if p.is_file() and not any(x in IGNORED_PARTS for x in p.relative_to(root).parts) | |
| and p.name != '.DS_Store' and not p.name.endswith(('.pyc', '.pyo'))} | |
| def digest(path): | |
| with path.open('rb') as f: | |
| return hashlib.file_digest(f, 'sha256').hexdigest() | |
| def main(): | |
| parser = argparse.ArgumentParser(description=__doc__) | |
| parser.add_argument('--root', type=Path, default=Path(__file__).resolve().parents[1]) | |
| parser.add_argument('--strict-release', action='store_true', help='Also require recorded upload readiness.') | |
| parser.add_argument('--include-large-data', action='store_true', help='Compatibility flag; graphs are always checked.') | |
| args = parser.parse_args() | |
| root = args.root.resolve() | |
| manifest = json.loads((root / 'provenance/repository_files.json').read_text()) | |
| actual = files(root) | |
| expected = {x['path']: x for x in manifest['files']} | |
| errors = [] | |
| if set(actual) - EXCLUDED != set(expected): | |
| errors.append({'error': 'missing or unmanifested upload files', | |
| 'missing': sorted(set(expected) - set(actual)), | |
| 'extra': sorted(set(actual) - EXCLUDED - set(expected))}) | |
| for name, rec in expected.items(): | |
| path = root / name | |
| if not path.resolve().is_relative_to(root) or path.is_symlink(): | |
| errors.append({'path': name, 'error': 'unsafe path or symlink'}) | |
| elif not path.is_file(): | |
| errors.append({'path': name, 'error': 'missing'}) | |
| elif getattr(path.stat(), 'st_flags', 0) & 0x40000000: | |
| errors.append({'path': name, 'error': 'cloud placeholder'}) | |
| elif path.stat().st_size != rec['bytes'] or digest(path) != rec['sha256']: | |
| errors.append({'path': name, 'error': 'content mismatch'}) | |
| sums = {} | |
| for line in (root / 'SHA256SUMS').read_text().splitlines(): | |
| sha, name = line.split(' ', 1) | |
| sums[name] = sha | |
| wanted_sums = {name: rec['sha256'] for name, rec in expected.items()} | |
| wanted_sums['provenance/repository_files.json'] = digest(root / 'provenance/repository_files.json') | |
| if sums != wanted_sums: | |
| errors.append({'error': 'SHA256SUMS differs from the manifest'}) | |
| source = json.loads((root / 'provenance/source_copy_verification.json').read_text()) | |
| status = json.loads((root / 'provenance/release_status.json').read_text()) | |
| report = {'scope': 'Complete local HF upload payload, including all graph bytes; no scientific experiments', | |
| 'checked_files': len(expected), 'checked_bytes': sum(x['bytes'] for x in expected.values()), | |
| 'protein_graph_files': len([n for n in expected if n.startswith('data/external/protein_graphs_esmc_600m/')]), | |
| 'integrity_passed': not errors, 'errors': errors, | |
| 'source_bytes_verified': source['passed'], | |
| 'upload_payload_complete': status['upload_payload_complete'], | |
| 'publication_ready': status['publication_ready'], | |
| 'public_upload_performed': status.get('public_upload_performed', False), | |
| 'new_scientific_experiments': False} | |
| print(json.dumps(report, indent=2)) | |
| return 1 if errors else 2 if args.strict_release and not status['publication_ready'] else 0 | |
| if __name__ == '__main__': | |
| sys.exit(main()) | |