"""Load one snapped segment of SharpMeow/vesuvius-snapped-labels and compare it with its published mesh. pip install huggingface_hub numpy tifffile imagecodecs python load_example.py # PHerc0841 w00, from the Hub python load_example.py --root snapped-labels # a local copy made with `hf download` python load_example.py --segment PHerc0139/20250108000000-w025_2025010863 # any path from index.json """ import argparse import io import json import urllib.request from pathlib import Path import numpy as np import tifffile REPO = "SharpMeow/vesuvius-snapped-labels" def opener(root): """read(path) -> bytes, from a local copy or from the Hub (cached by huggingface_hub).""" if root: return lambda p: (Path(root) / p).read_bytes() from huggingface_hub import hf_hub_download return lambda p: Path(hf_hub_download(REPO, p, repo_type="dataset")).read_bytes() def tif(b): return tifffile.imread(io.BytesIO(b)) def main(): a = argparse.ArgumentParser(description=__doc__.splitlines()[0]) a.add_argument("--root", help="a local copy of the dataset; default: read from the Hub") a.add_argument("--segment", default="PHerc0841/20260220213127-w00", help="a segment path from index.json") args = a.parse_args() read = opener(args.root) rec = json.loads(read(f"{args.segment}/release.json")) snapped = np.stack([tif(read(f"{args.segment}/snapped.tifxyz/{c}.tif")) for c in "xyz"], -1) mask = tif(read(f"{args.segment}/release_mask.tif")) # 0 released, 1 held back, 255 no vertex abstain = tif(read(f"{args.segment}/abstain.tif")) # 0 snapped, 1 not measured (left in place), 2 filled # the published mesh, read live from the open data (the URL and its checksums are in release.json) src = rec["source_mesh"].rstrip("/") published = np.stack([tif(urllib.request.urlopen(f"{src}/{c}.tif").read()) for c in "xyz"], -1) out = snapped[..., 0] != -1 # released vertices; -1 where none or held back d = np.linalg.norm(snapped[out] - published[out], axis=1) # 0 where nothing moved the vertex print(rec["scroll"], rec["segment"], rec["method"], "grid", snapped.shape[:2]) print("released", int((mask == 0).sum()), "held back", int((mask == 1).sum()), "snapped", int(((abstain == 0) & out).sum()), "filled", int((abstain == 2).sum()), "left in place", int((abstain == 1).sum())) print("move, voxels, over released vertices: median %.2f, 90th percentile %.2f" % (np.median(d), np.percentile(d, 90))) print("matches release.json:", round(float(np.median(d)), 3) == rec["summary"]["move_voxels"]["median"]) if __name__ == "__main__": main()