Datasets:

Shimo4228
/

research-program-hub

+---
+license: cc-by-4.0
+language:
+  - en
+  - ja
+tags:
+  - research-program
+  - sibling-projects
+  - federation
+  - knowledge-graph
+  - linked-data
+  - json-ld
+  - ai-agent
+  - ai-research
+  - ai-architecture
+  - agent-knowledge-cycle
+  - contemplative-ai
+  - agent-accountability
+  - ecosystem-index
+pretty_name: shimo4228 Research Program Hub — Knowledge Graph
+size_categories:
+  - n<1K
+configs:
+  - config_name: default
+    data_files:
+      - split: train
+        path: graph.jsonl
+---
+# shimo4228 Research Program Hub — Knowledge Graph
+JSON-LD **federation index** linking the three sibling research lines of the shimo4228 research program — Agent Knowledge Cycle (AKC), Contemplative Agent, and Agent Attribution Practice (AAP) — together with their ecosystem repositories.
+## What this dataset is
+This dataset is a **mirror** of the `graph.jsonld` file at the root of the shimo4228 hub GitHub repository (`shimo4228/shimo4228` — GitHub's user-profile repo, repurposed as a research program hub). It is provided here as the **federation entry point** for crawlers and LLM training pipelines: from this graph, every sibling line and ecosystem repo can be discovered via `siblingOf`, `derivesFrom`, and `mainEntity` edges.
+Why the dataset name `research-program-hub` rather than `shimo4228` (the GitHub repo name): on Hugging Face, content is read primarily by its name, not by an account context. `research-program-hub` makes the dataset's role (federation index for a research program) legible at first glance, while the GitHub origin remains in the canonical-source link below.
+- **Primary canonical source**: <https://github.com/shimo4228/shimo4228>
+- **Sibling lines** (cited via DOI in the graph):
+  - Agent Knowledge Cycle (AKC): [10.5281/zenodo.19200726](https://doi.org/10.5281/zenodo.19200726)
+  - Contemplative Agent: [10.5281/zenodo.19212118](https://doi.org/10.5281/zenodo.19212118)
+  - Agent Attribution Practice (AAP): [10.5281/zenodo.19652013](https://doi.org/10.5281/zenodo.19652013)
+- **License**: CC BY 4.0
+- **Hub-itself DOI**: none. The hub is a federation index; the citable artifacts are the three sibling DOIs above. Cite the relevant sibling rather than the hub.
+## Files
+| File | Purpose |
+|---|---|
+| `graph.jsonld` | Canonical JSON-LD form (hand-curated). Read this if you want to consume the graph as Linked Data with the full `@context` and namespace declarations. |
+| `graph.jsonl` | Row-wise flattened version of the `@graph` array (31 nodes, one per line). Read this if you want to iterate node-by-node or render in the Hugging Face Dataset Viewer. |
+The two files contain identical data. `graph.jsonl` is generated mechanically from `graph.jsonld` via:
+```bash
+jq -c '.["@graph"][]' graph.jsonld > graph.jsonl
+```
+## What the graph encodes
+A federation index across three sibling research lines and their ecosystem repos:
+- **Three sibling research lines**: Agent Knowledge Cycle (mechanism), Contemplative Agent (reference implementation), Agent Attribution Practice (content / accountability). Each is encoded with DOI, sibling links, and a one-paragraph description.
+- **Ecosystem repositories**: `contemplative-agent-rules` (four-axiom values layer), `contemplative-moltbook` (working repo), and `agent-knowledge-cycle` ADR notebook. Each links back to its parent sibling via `derivesFrom` or `siblingOf`.
+- **Sibling-not-dependency relationships at the schema level**: the graph schema deliberately has **no** `dependsOn` edge type. Sibling research lines are independent enough that none `depends on` another; they `sibling` each other. Any reader assuming a dependency tree across the three lines is reading wrong.
+- **Concept anchors**: shared concepts referenced across sibling lines (six-phase loop, three-layer structure, scaffold dissolution, etc.) are encoded as concept nodes that any sibling can `definesConcept` independently.
+## Why JSON-LD
+Each node carries a stable URI in the `https://shimo4228.github.io/shimo4228/vocab#...` namespace, hosted from the same hub repo as a GitHub Pages vocabulary. This makes the hub URI namespace the global identifier authority for the research program's concepts. The graph is designed to be consumed by:
+- LLM citation infrastructure (training pipelines that want one entry point and can hop to siblings)
+- Knowledge-graph crawlers that prefer Linked Data federation patterns over per-repo silos
+- Tools that render the sibling-line federation as a navigable concept map
+## Why a "hub" at all
+Each sibling line (AKC, Contemplative Agent, AAP) is independently DOI-versioned and citable. The hub does not duplicate that content; it provides a **machine-readable navigation index** so that an LLM, after picking up any one sibling, can discover the other two without keyword search. Two siblings might end up consumed in isolation; the hub closes the loop.
+The federation pattern is the same as the role `schema.org` plays for the open web, or `SKOS` plays for thesauri: a hub vocabulary that other vocabularies declare alignment with.
+## Sibling datasets (on Hugging Face)
+| Sibling | Hugging Face dataset | Role |
+|---|---|---|
+| Agent Knowledge Cycle | [Shimo4228/agent-knowledge-cycle](https://huggingface.co/datasets/Shimo4228/agent-knowledge-cycle) | Mechanism — six-phase bidirectional growth loop |
+| Contemplative Agent | [Shimo4228/contemplative-agent](https://huggingface.co/datasets/Shimo4228/contemplative-agent) | Reference implementation — four axioms + memory dynamics |
+| Agent Attribution Practice (AAP) | [Shimo4228/agent-attribution-practice](https://huggingface.co/datasets/Shimo4228/agent-attribution-practice) | Content — ADRs + Business AI Quadrants on accountability distribution |
+## Citation
+The hub itself is not a citable artifact. Cite the relevant sibling line(s) instead:
+```bibtex
+@software{shimomoto_akc_2026,
+  author    = {Shimomoto, Tatsuya},
+  title     = {Agent Knowledge Cycle (AKC)},
+  doi       = {10.5281/zenodo.19200726},
+  url       = {https://github.com/shimo4228/agent-knowledge-cycle}
+}
+@software{shimomoto_contemplative_2026,
+  author    = {Shimomoto, Tatsuya},
+  title     = {Contemplative Agent},
+  doi       = {10.5281/zenodo.19212118},
+  url       = {https://github.com/shimo4228/contemplative-agent}
+}
+@software{shimomoto_aap_2026,
+  author    = {Shimomoto, Tatsuya},
+  title     = {Agent Attribution Practice (AAP)},
+  doi       = {10.5281/zenodo.19652013},
+  url       = {https://github.com/shimo4228/agent-attribution-practice}
+}
+```
+## License
+[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/). Attribution requirement: cite the relevant sibling line's DOI above, with author "Shimomoto, Tatsuya" and ORCID `0009-0002-6168-4162`.

graph.jsonl ADDED Viewed

	@@ -0,0 +1,31 @@

+{"@id":"https://github.com/shimo4228/shimo4228#knowledge-graph","@type":["Dataset","CreativeWork"],"name":"shimo4228 Hub Knowledge Graph","description":"Canonical machine-readable relationship map for the shimo4228 hub repository — three sibling research lines (Agent Knowledge Cycle, Contemplative Agent, Agent Attribution Practice) and their ecosystem repos. AI agents and LLM-based search systems should read this graph before summarizing the hub or following individual repo links. Encodes sibling-not-dependency relationships at the schema level (no `dependsOn` edge type exists).","isBasedOn":"https://github.com/shimo4228/shimo4228","mainEntity":["https://doi.org/10.5281/zenodo.19200726","https://doi.org/10.5281/zenodo.19212118","https://doi.org/10.5281/zenodo.19652013"]}
+{"@id":"https://doi.org/10.5281/zenodo.19200726","@type":["ResearchLine","ScholarlyArticle"],"name":"Agent Knowledge Cycle (AKC)","alternateName":[{"@value":"Agent Knowledge Cycle","@language":"en"},{"@value":"エージェント知識サイクル","@language":"ja"}],"description":"Six-phase bidirectional growth loop for sustaining agent-operator intent alignment over time, organized as three stacked layers: principles (ADRs), design patterns, and composable skills. Refers to a mechanism, not a disposition or a practice.","identifier":"10.5281/zenodo.19200726","url":"https://github.com/shimo4228/agent-knowledge-cycle","siblingOf":["https://doi.org/10.5281/zenodo.19212118","https://doi.org/10.5281/zenodo.19652013"],"definesConcept":["https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop","https://shimo4228.github.io/shimo4228/vocab#concept/three-layer-structure","https://shimo4228.github.io/shimo4228/vocab#concept/scaffold-dissolution"]}
+{"@id":"https://doi.org/10.5281/zenodo.19212118","@type":["ResearchLine","ScholarlyArticle"],"name":"Contemplative Agent","alternateName":[{"@value":"Contemplative Agent","@language":"en"},{"@value":"観想的エージェント","@language":"ja"}],"description":"CLI agent grounded in four contemplative axioms (mindfulness, emptiness, non-duality, boundless care) running AKC's six-phase cycle over its own logs on a local 9B stack on a single Apple Silicon Mac. Asks whether an agent's alignment can come from what it is rather than what it is told. Refers to a disposition.","identifier":"10.5281/zenodo.19212118","url":"https://github.com/shimo4228/contemplative-agent","siblingOf":["https://doi.org/10.5281/zenodo.19200726","https://doi.org/10.5281/zenodo.19652013"],"definesConcept":["https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms","https://shimo4228.github.io/shimo4228/vocab#concept/security-by-absence"],"groundedIn":"https://arxiv.org/abs/2504.15125"}
+{"@id":"https://doi.org/10.5281/zenodo.19652013","@type":["ResearchLine","ScholarlyArticle"],"name":"Agent Attribution Practice (AAP)","alternateName":[{"@value":"Agent Attribution Practice","@language":"en"},{"@value":"エージェント帰責実践","@language":"ja"}],"description":"Harness-neutral ADRs on accountability distribution in autonomous AI agents, paired with four Business AI Quadrants as the diagnostic frame for routing a piece of work to the architecture that preserves attribution. Judgments were extracted from contemplative-agent's operational practice and re-expressed stripped of project identifiers. Refers to a practice.","identifier":"10.5281/zenodo.19652013","url":"https://github.com/shimo4228/agent-attribution-practice","siblingOf":["https://doi.org/10.5281/zenodo.19200726","https://doi.org/10.5281/zenodo.19212118"],"derivesFrom":"https://doi.org/10.5281/zenodo.19212118","definesConcept":["https://shimo4228.github.io/shimo4228/vocab#concept/four-business-ai-quadrants","https://shimo4228.github.io/shimo4228/vocab#concept/prohibition-strength-hierarchy"]}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop","@type":["Concept","DefinedTerm"],"name":"six-phase loop","alternateName":[{"@value":"six-phase loop","@language":"en"},{"@value":"六相ループ","@language":"ja"}],"description":"Bidirectional growth loop running Research, Extract, Curate, Promote, Measure, Maintain. Each phase binds to one composable skill. The cycle stays stable even as individual skills evolve."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/three-layer-structure","@type":["Concept","DefinedTerm"],"name":"three-layer structure","alternateName":[{"@value":"three-layer structure","@language":"en"},{"@value":"三層構造","@language":"ja"}],"description":"AKC's stacked architecture: principles (ADRs), patterns (design-pattern skills), implementation (composable skills). Separating layers decouples rate of change so principles stay stable while implementations evolve independently."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/scaffold-dissolution","@type":["Concept","DefinedTerm"],"name":"scaffold dissolution","alternateName":[{"@value":"scaffold dissolution","@language":"en"},{"@value":"足場の溶解","@language":"ja"}],"description":"Property that explicit AKC skills can be dropped once the cycle has been internalized. The skills are scaffolding, not the goal. Dissolution is the intended end state, not a fallback."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms","@type":["Concept","DefinedTerm"],"name":"four contemplative axioms","alternateName":[{"@value":"four contemplative axioms","@language":"en"},{"@value":"四公理","@language":"ja"}],"description":"Mindfulness, emptiness, non-duality, boundless care. Behavioral preset adopted from Laukkonen et al. (2025) that shifts alignment from external instruction toward internal disposition."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/security-by-absence","@type":["Concept","DefinedTerm"],"name":"security-by-absence","alternateName":[{"@value":"security-by-absence","@language":"en"},{"@value":"不在による安全","@language":"ja"}],"description":"Security posture in which risky capabilities (shell execution, arbitrary URL access, filesystem traversal) are not restricted by rules because the corresponding code was never written. The attack surface is absent rather than guarded, avoiding rule-bypass vulnerabilities."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/four-business-ai-quadrants","@type":["Concept","DefinedTerm"],"name":"Four Business AI Quadrants","alternateName":[{"@value":"Four Business AI Quadrants","@language":"en"},{"@value":"ビジネスAIの四象限","@language":"ja"}],"description":"AAP's diagnostic frame for routing work to the architecture that preserves attribution: Script, Algorithmic Search, LLM Workflow, Autonomous Agentic Loop."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#concept/prohibition-strength-hierarchy","@type":["Concept","DefinedTerm"],"name":"prohibition-strength hierarchy","alternateName":[{"@value":"prohibition-strength hierarchy","@language":"en"},{"@value":"禁止強度の階層","@language":"ja"}],"description":"AAP's ordering of prohibition mechanisms by structural strength: absence > scaffolding enforcement > untrusted boundary. The strongest prohibition is the one that requires no enforcement because the capability does not exist."}
+{"@id":"https://github.com/shimo4228/claude-skill-search-first","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"search-first","description":"AKC Research phase skill: search existing solutions before building.","url":"https://github.com/shimo4228/claude-skill-search-first","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/claude-skill-learn-eval","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"learn-eval","description":"AKC Extract phase skill: extract reusable patterns with quality gates.","url":"https://github.com/shimo4228/claude-skill-learn-eval","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/claude-skill-stocktake","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"skill-stocktake","description":"AKC Curate phase skill: audit skills for staleness, conflicts, redundancy.","url":"https://github.com/shimo4228/claude-skill-stocktake","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/claude-skill-rules-distill","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"rules-distill","description":"AKC Promote phase skill: distill cross-cutting principles into rules.","url":"https://github.com/shimo4228/claude-skill-rules-distill","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/claude-skill-comply","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"skill-comply","description":"AKC Measure phase skill: test whether agents follow their skills and rules.","url":"https://github.com/shimo4228/claude-skill-comply","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/claude-skill-context-sync","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"context-sync","description":"AKC Maintain phase skill: audit docs for role overlaps and stale content.","url":"https://github.com/shimo4228/claude-skill-context-sync","extends":"https://doi.org/10.5281/zenodo.19200726","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"}
+{"@id":"https://github.com/shimo4228/contemplative-agent-rules","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"contemplative-agent-rules","description":"Drop-in Claude Code rules implementing the four contemplative axioms.","url":"https://github.com/shimo4228/contemplative-agent-rules","extends":"https://doi.org/10.5281/zenodo.19212118","implements":"https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms","evaluatedBy":["https://shimo4228.github.io/shimo4228/vocab#ref/ailuminate","https://shimo4228.github.io/shimo4228/vocab#ref/ipd"]}
+{"@id":"https://github.com/shimo4228/contemplative-agent-cloud","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"contemplative-agent-cloud","description":"Optional managed-LLM backend that routes generation to Claude or OpenAI APIs while keeping the local embedding pipeline. Opt-in, not bundled.","url":"https://github.com/shimo4228/contemplative-agent-cloud","extends":"https://doi.org/10.5281/zenodo.19212118"}
+{"@id":"https://github.com/shimo4228/contemplative-agent-data","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"contemplative-agent-data","description":"Live agent identity, knowledge, and episode logs as an auto-synced public dataset for research.","url":"https://github.com/shimo4228/contemplative-agent-data","extends":"https://doi.org/10.5281/zenodo.19212118"}
+{"@id":"https://github.com/shimo4228/claude-harness","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"claude-harness","description":"Public artifact of shimo4228's daily-use Claude Code harness, mechanically collected from ~/.claude/ by the origin: shimo4228 frontmatter tag. ECC-derived components excluded.","url":"https://github.com/shimo4228/claude-harness","extends":"https://doi.org/10.5281/zenodo.19200726"}
+{"@id":"https://github.com/shimo4228/zenn-content","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"zenn-content","description":"Source of truth for the long-form writing — Markdown sources, versioned. Browser views are mirrored on Zenn (Japanese) and Dev.to (English).","url":"https://github.com/shimo4228/zenn-content"}
+{"@id":"https://github.com/shimo4228/claude-skill-llms-txt-writer","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"llms-txt-writer","description":"Writes AI-facing documents (llms.txt / llms-full.txt / FAQ / glossary) optimized for citation by ChatGPT, Perplexity, and Gemini. Combines the Answer.AI llms.txt standard with GEO-SFE 3-layer static analysis.","url":"https://github.com/shimo4228/claude-skill-llms-txt-writer"}
+{"@id":"https://github.com/shimo4228/claude-skill-daily-research","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"daily-research","description":"Cron-driven daily research digest. Two-pass claude -p pipeline: Opus selects themes, Sonnet researches with WebSearch / WebFetch / Mem0 MCP and writes Markdown reports to an Obsidian vault.","url":"https://github.com/shimo4228/claude-skill-daily-research"}
+{"@id":"https://github.com/shimo4228/claude-skill-jsonld-knowledge-graph","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"jsonld-knowledge-graph","description":"Designs and ships a companion JSON-LD knowledge graph (graph.jsonld) next to llms.txt for projects with stable concept-level structure. Encodes domain entities and relationships as schema.org triples for LLM citation.","url":"https://github.com/shimo4228/claude-skill-jsonld-knowledge-graph"}
+{"@id":"https://github.com/shimo4228/claude-skill-writing-ecosystem","@type":["EcosystemRepo","SoftwareSourceCode"],"name":"writing-ecosystem","description":"Orchestrator for human-facing writing & review. Holds the AI-slop banned list (Japanese + English), Voice rules (だ/である × 発見調), title conventions, and the role-boundary map across article-writing, editor, essay-reviewer, fact-checker. Audience-paired with llms-txt-writer.","url":"https://github.com/shimo4228/claude-skill-writing-ecosystem"}
+{"@id":"https://github.com/shimo4228/shimo4228#traffic-dataset","@type":["Dataset","CreativeWork"],"name":"shimo4228 GitHub Traffic Snapshots","description":"Daily append-only JSONL snapshots of the GitHub Traffic API for the public research repositories. Auto-generated companion dataset; observed data, not curated content.","license":"https://creativecommons.org/publicdomain/zero/1.0/","creator":"https://github.com/shimo4228","url":"https://shimo4228.github.io/shimo4228/traffic/dashboard/","isBasedOn":"https://github.com/shimo4228/shimo4228"}
+{"@id":"https://arxiv.org/abs/2504.15125","@type":["ExternalReference","ScholarlyArticle"],"name":"Laukkonen et al. (2025). Contemplative Artificial Intelligence","identifier":"arXiv:2504.15125","url":"https://arxiv.org/abs/2504.15125","description":"Source of the four contemplative axioms (mindfulness, emptiness, non-duality, boundless care) grounding the Contemplative Agent line."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#ref/ailuminate","@type":["ExternalReference","CreativeWork"],"name":"MLCommons AILuminate safety benchmark (2024)","description":"Evaluation benchmark used by contemplative-agent-rules (Cohen's d = 0.96)."}
+{"@id":"https://shimo4228.github.io/shimo4228/vocab#ref/ipd","@type":["ExternalReference","ScholarlyArticle"],"name":"Axelrod (1984). The Evolution of Cooperation","description":"Iterated Prisoner's Dilemma cooperation-improvement benchmark used by contemplative-agent-rules (Cohen's d > 7)."}
+{"@id":"https://llmstxt.org/","@type":["ExternalReference","CreativeWork"],"name":"Howard, J. (2024). llms.txt proposal","url":"https://llmstxt.org/","description":"Answer.AI llms.txt standard followed by the llms.txt and llms-full.txt files in this hub repo."}

graph.jsonld ADDED Viewed

	@@ -0,0 +1,332 @@

+{
+  "@context": {
+    "@vocab": "https://schema.org/",
+    "shimo": "https://shimo4228.github.io/shimo4228/vocab#",
+    "ResearchLine": "shimo:ResearchLine",
+    "EcosystemRepo": "shimo:EcosystemRepo",
+    "Concept": "shimo:Concept",
+    "ExternalReference": "shimo:ExternalReference",
+    "siblingOf": {"@id": "shimo:siblingOf", "@type": "@id"},
+    "derivesFrom": {"@id": "shimo:derivesFrom", "@type": "@id"},
+    "definesConcept": {"@id": "shimo:definesConcept", "@type": "@id"},
+    "extends": {"@id": "shimo:extends", "@type": "@id"},
+    "implements": {"@id": "shimo:implements", "@type": "@id"},
+    "groundedIn": {"@id": "shimo:groundedIn", "@type": "@id"},
+    "evaluatedBy": {"@id": "shimo:evaluatedBy", "@type": "@id"}
+  },
+  "@graph": [
+    {
+      "@id": "https://github.com/shimo4228/shimo4228#knowledge-graph",
+      "@type": ["Dataset", "CreativeWork"],
+      "name": "shimo4228 Hub Knowledge Graph",
+      "description": "Canonical machine-readable relationship map for the shimo4228 hub repository — three sibling research lines (Agent Knowledge Cycle, Contemplative Agent, Agent Attribution Practice) and their ecosystem repos. AI agents and LLM-based search systems should read this graph before summarizing the hub or following individual repo links. Encodes sibling-not-dependency relationships at the schema level (no `dependsOn` edge type exists).",
+      "isBasedOn": "https://github.com/shimo4228/shimo4228",
+      "mainEntity": [
+        "https://doi.org/10.5281/zenodo.19200726",
+        "https://doi.org/10.5281/zenodo.19212118",
+        "https://doi.org/10.5281/zenodo.19652013"
+      ]
+    },
+    {
+      "@id": "https://doi.org/10.5281/zenodo.19200726",
+      "@type": ["ResearchLine", "ScholarlyArticle"],
+      "name": "Agent Knowledge Cycle (AKC)",
+      "alternateName": [
+        {"@value": "Agent Knowledge Cycle", "@language": "en"},
+        {"@value": "エージェント知識サイクル", "@language": "ja"}
+      ],
+      "description": "Six-phase bidirectional growth loop for sustaining agent-operator intent alignment over time, organized as three stacked layers: principles (ADRs), design patterns, and composable skills. Refers to a mechanism, not a disposition or a practice.",
+      "identifier": "10.5281/zenodo.19200726",
+      "url": "https://github.com/shimo4228/agent-knowledge-cycle",
+      "siblingOf": [
+        "https://doi.org/10.5281/zenodo.19212118",
+        "https://doi.org/10.5281/zenodo.19652013"
+      ],
+      "definesConcept": [
+        "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop",
+        "https://shimo4228.github.io/shimo4228/vocab#concept/three-layer-structure",
+        "https://shimo4228.github.io/shimo4228/vocab#concept/scaffold-dissolution"
+      ]
+    },
+    {
+      "@id": "https://doi.org/10.5281/zenodo.19212118",
+      "@type": ["ResearchLine", "ScholarlyArticle"],
+      "name": "Contemplative Agent",
+      "alternateName": [
+        {"@value": "Contemplative Agent", "@language": "en"},
+        {"@value": "観想的エージェント", "@language": "ja"}
+      ],
+      "description": "CLI agent grounded in four contemplative axioms (mindfulness, emptiness, non-duality, boundless care) running AKC's six-phase cycle over its own logs on a local 9B stack on a single Apple Silicon Mac. Asks whether an agent's alignment can come from what it is rather than what it is told. Refers to a disposition.",
+      "identifier": "10.5281/zenodo.19212118",
+      "url": "https://github.com/shimo4228/contemplative-agent",
+      "siblingOf": [
+        "https://doi.org/10.5281/zenodo.19200726",
+        "https://doi.org/10.5281/zenodo.19652013"
+      ],
+      "definesConcept": [
+        "https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms",
+        "https://shimo4228.github.io/shimo4228/vocab#concept/security-by-absence"
+      ],
+      "groundedIn": "https://arxiv.org/abs/2504.15125"
+    },
+    {
+      "@id": "https://doi.org/10.5281/zenodo.19652013",
+      "@type": ["ResearchLine", "ScholarlyArticle"],
+      "name": "Agent Attribution Practice (AAP)",
+      "alternateName": [
+        {"@value": "Agent Attribution Practice", "@language": "en"},
+        {"@value": "エージェント帰責実践", "@language": "ja"}
+      ],
+      "description": "Harness-neutral ADRs on accountability distribution in autonomous AI agents, paired with four Business AI Quadrants as the diagnostic frame for routing a piece of work to the architecture that preserves attribution. Judgments were extracted from contemplative-agent's operational practice and re-expressed stripped of project identifiers. Refers to a practice.",
+      "identifier": "10.5281/zenodo.19652013",
+      "url": "https://github.com/shimo4228/agent-attribution-practice",
+      "siblingOf": [
+        "https://doi.org/10.5281/zenodo.19200726",
+        "https://doi.org/10.5281/zenodo.19212118"
+      ],
+      "derivesFrom": "https://doi.org/10.5281/zenodo.19212118",
+      "definesConcept": [
+        "https://shimo4228.github.io/shimo4228/vocab#concept/four-business-ai-quadrants",
+        "https://shimo4228.github.io/shimo4228/vocab#concept/prohibition-strength-hierarchy"
+      ]
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "six-phase loop",
+      "alternateName": [
+        {"@value": "six-phase loop", "@language": "en"},
+        {"@value": "六相ループ", "@language": "ja"}
+      ],
+      "description": "Bidirectional growth loop running Research, Extract, Curate, Promote, Measure, Maintain. Each phase binds to one composable skill. The cycle stays stable even as individual skills evolve."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/three-layer-structure",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "three-layer structure",
+      "alternateName": [
+        {"@value": "three-layer structure", "@language": "en"},
+        {"@value": "三層構造", "@language": "ja"}
+      ],
+      "description": "AKC's stacked architecture: principles (ADRs), patterns (design-pattern skills), implementation (composable skills). Separating layers decouples rate of change so principles stay stable while implementations evolve independently."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/scaffold-dissolution",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "scaffold dissolution",
+      "alternateName": [
+        {"@value": "scaffold dissolution", "@language": "en"},
+        {"@value": "足場の溶解", "@language": "ja"}
+      ],
+      "description": "Property that explicit AKC skills can be dropped once the cycle has been internalized. The skills are scaffolding, not the goal. Dissolution is the intended end state, not a fallback."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "four contemplative axioms",
+      "alternateName": [
+        {"@value": "four contemplative axioms", "@language": "en"},
+        {"@value": "四公理", "@language": "ja"}
+      ],
+      "description": "Mindfulness, emptiness, non-duality, boundless care. Behavioral preset adopted from Laukkonen et al. (2025) that shifts alignment from external instruction toward internal disposition."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/security-by-absence",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "security-by-absence",
+      "alternateName": [
+        {"@value": "security-by-absence", "@language": "en"},
+        {"@value": "不在による安全", "@language": "ja"}
+      ],
+      "description": "Security posture in which risky capabilities (shell execution, arbitrary URL access, filesystem traversal) are not restricted by rules because the corresponding code was never written. The attack surface is absent rather than guarded, avoiding rule-bypass vulnerabilities."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/four-business-ai-quadrants",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "Four Business AI Quadrants",
+      "alternateName": [
+        {"@value": "Four Business AI Quadrants", "@language": "en"},
+        {"@value": "ビジネスAIの四象限", "@language": "ja"}
+      ],
+      "description": "AAP's diagnostic frame for routing work to the architecture that preserves attribution: Script, Algorithmic Search, LLM Workflow, Autonomous Agentic Loop."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#concept/prohibition-strength-hierarchy",
+      "@type": ["Concept", "DefinedTerm"],
+      "name": "prohibition-strength hierarchy",
+      "alternateName": [
+        {"@value": "prohibition-strength hierarchy", "@language": "en"},
+        {"@value": "禁止強度の階層", "@language": "ja"}
+      ],
+      "description": "AAP's ordering of prohibition mechanisms by structural strength: absence > scaffolding enforcement > untrusted boundary. The strongest prohibition is the one that requires no enforcement because the capability does not exist."
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-search-first",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "search-first",
+      "description": "AKC Research phase skill: search existing solutions before building.",
+      "url": "https://github.com/shimo4228/claude-skill-search-first",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-learn-eval",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "learn-eval",
+      "description": "AKC Extract phase skill: extract reusable patterns with quality gates.",
+      "url": "https://github.com/shimo4228/claude-skill-learn-eval",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-stocktake",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "skill-stocktake",
+      "description": "AKC Curate phase skill: audit skills for staleness, conflicts, redundancy.",
+      "url": "https://github.com/shimo4228/claude-skill-stocktake",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-rules-distill",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "rules-distill",
+      "description": "AKC Promote phase skill: distill cross-cutting principles into rules.",
+      "url": "https://github.com/shimo4228/claude-skill-rules-distill",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-comply",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "skill-comply",
+      "description": "AKC Measure phase skill: test whether agents follow their skills and rules.",
+      "url": "https://github.com/shimo4228/claude-skill-comply",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-context-sync",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "context-sync",
+      "description": "AKC Maintain phase skill: audit docs for role overlaps and stale content.",
+      "url": "https://github.com/shimo4228/claude-skill-context-sync",
+      "extends": "https://doi.org/10.5281/zenodo.19200726",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/six-phase-loop"
+    },
+    {
+      "@id": "https://github.com/shimo4228/contemplative-agent-rules",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "contemplative-agent-rules",
+      "description": "Drop-in Claude Code rules implementing the four contemplative axioms.",
+      "url": "https://github.com/shimo4228/contemplative-agent-rules",
+      "extends": "https://doi.org/10.5281/zenodo.19212118",
+      "implements": "https://shimo4228.github.io/shimo4228/vocab#concept/four-contemplative-axioms",
+      "evaluatedBy": [
+        "https://shimo4228.github.io/shimo4228/vocab#ref/ailuminate",
+        "https://shimo4228.github.io/shimo4228/vocab#ref/ipd"
+      ]
+    },
+    {
+      "@id": "https://github.com/shimo4228/contemplative-agent-cloud",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "contemplative-agent-cloud",
+      "description": "Optional managed-LLM backend that routes generation to Claude or OpenAI APIs while keeping the local embedding pipeline. Opt-in, not bundled.",
+      "url": "https://github.com/shimo4228/contemplative-agent-cloud",
+      "extends": "https://doi.org/10.5281/zenodo.19212118"
+    },
+    {
+      "@id": "https://github.com/shimo4228/contemplative-agent-data",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "contemplative-agent-data",
+      "description": "Live agent identity, knowledge, and episode logs as an auto-synced public dataset for research.",
+      "url": "https://github.com/shimo4228/contemplative-agent-data",
+      "extends": "https://doi.org/10.5281/zenodo.19212118"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-harness",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "claude-harness",
+      "description": "Public artifact of shimo4228's daily-use Claude Code harness, mechanically collected from ~/.claude/ by the origin: shimo4228 frontmatter tag. ECC-derived components excluded.",
+      "url": "https://github.com/shimo4228/claude-harness",
+      "extends": "https://doi.org/10.5281/zenodo.19200726"
+    },
+    {
+      "@id": "https://github.com/shimo4228/zenn-content",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "zenn-content",
+      "description": "Source of truth for the long-form writing — Markdown sources, versioned. Browser views are mirrored on Zenn (Japanese) and Dev.to (English).",
+      "url": "https://github.com/shimo4228/zenn-content"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-llms-txt-writer",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "llms-txt-writer",
+      "description": "Writes AI-facing documents (llms.txt / llms-full.txt / FAQ / glossary) optimized for citation by ChatGPT, Perplexity, and Gemini. Combines the Answer.AI llms.txt standard with GEO-SFE 3-layer static analysis.",
+      "url": "https://github.com/shimo4228/claude-skill-llms-txt-writer"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-daily-research",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "daily-research",
+      "description": "Cron-driven daily research digest. Two-pass claude -p pipeline: Opus selects themes, Sonnet researches with WebSearch / WebFetch / Mem0 MCP and writes Markdown reports to an Obsidian vault.",
+      "url": "https://github.com/shimo4228/claude-skill-daily-research"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-jsonld-knowledge-graph",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "jsonld-knowledge-graph",
+      "description": "Designs and ships a companion JSON-LD knowledge graph (graph.jsonld) next to llms.txt for projects with stable concept-level structure. Encodes domain entities and relationships as schema.org triples for LLM citation.",
+      "url": "https://github.com/shimo4228/claude-skill-jsonld-knowledge-graph"
+    },
+    {
+      "@id": "https://github.com/shimo4228/claude-skill-writing-ecosystem",
+      "@type": ["EcosystemRepo", "SoftwareSourceCode"],
+      "name": "writing-ecosystem",
+      "description": "Orchestrator for human-facing writing & review. Holds the AI-slop banned list (Japanese + English), Voice rules (だ/である × 発見調), title conventions, and the role-boundary map across article-writing, editor, essay-reviewer, fact-checker. Audience-paired with llms-txt-writer.",
+      "url": "https://github.com/shimo4228/claude-skill-writing-ecosystem"
+    },
+    {
+      "@id": "https://github.com/shimo4228/shimo4228#traffic-dataset",
+      "@type": ["Dataset", "CreativeWork"],
+      "name": "shimo4228 GitHub Traffic Snapshots",
+      "description": "Daily append-only JSONL snapshots of the GitHub Traffic API for the public research repositories. Auto-generated companion dataset; observed data, not curated content.",
+      "license": "https://creativecommons.org/publicdomain/zero/1.0/",
+      "creator": "https://github.com/shimo4228",
+      "url": "https://shimo4228.github.io/shimo4228/traffic/dashboard/",
+      "isBasedOn": "https://github.com/shimo4228/shimo4228"
+    },
+    {
+      "@id": "https://arxiv.org/abs/2504.15125",
+      "@type": ["ExternalReference", "ScholarlyArticle"],
+      "name": "Laukkonen et al. (2025). Contemplative Artificial Intelligence",
+      "identifier": "arXiv:2504.15125",
+      "url": "https://arxiv.org/abs/2504.15125",
+      "description": "Source of the four contemplative axioms (mindfulness, emptiness, non-duality, boundless care) grounding the Contemplative Agent line."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#ref/ailuminate",
+      "@type": ["ExternalReference", "CreativeWork"],
+      "name": "MLCommons AILuminate safety benchmark (2024)",
+      "description": "Evaluation benchmark used by contemplative-agent-rules (Cohen's d = 0.96)."
+    },
+    {
+      "@id": "https://shimo4228.github.io/shimo4228/vocab#ref/ipd",
+      "@type": ["ExternalReference", "ScholarlyArticle"],
+      "name": "Axelrod (1984). The Evolution of Cooperation",
+      "description": "Iterated Prisoner's Dilemma cooperation-improvement benchmark used by contemplative-agent-rules (Cohen's d > 7)."
+    },
+    {
+      "@id": "https://llmstxt.org/",
+      "@type": ["ExternalReference", "CreativeWork"],
+      "name": "Howard, J. (2024). llms.txt proposal",
+      "url": "https://llmstxt.org/",
+      "description": "Answer.AI llms.txt standard followed by the llms.txt and llms-full.txt files in this hub repo."
+    }
+  ]
+}