doubting-ms-marco / examples /evaluate.py
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"""Score a run on the strict Doubting MS MARCO dev qrels, or export TREC qrels from the package.
Score: python evaluate.py --qrels trec/dev.strict.qrels --run run.trec
run.trec has TREC run lines "query_id Q0 passage_id rank score tag"; a passage is ranked by descending score
(ties broken by passage id). MRR@10, nDCG@10 (binary gain) and Recall@100 are averaged over the queries with
at least one relevant pair in the qrels (the strict subset); queries absent from the run score 0.
Malformed lines, non-finite scores and a passage listed twice for one query are errors.
Export: python evaluate.py --export-train-qrels train.qrels [--package DIR]
writes the `qrels` train split as TREC qrels "query_id 0 passage_id grade" (needs pyarrow).
No other packages are needed for scoring.
"""
import argparse
import collections
import glob
import math
import os
import sys
def read_qrels(path):
rel, seen = collections.defaultdict(dict), set()
with open(path) as f:
for n, line in enumerate(f, 1):
x = line.split()
if not x:
continue
if len(x) != 4 or not x[3].lstrip("-").isdigit():
raise ValueError(f"{path}:{n}: expected 'query_id 0 passage_id grade'")
if (x[0], x[2]) in seen:
raise ValueError(f"{path}:{n}: pair {x[0]} {x[2]} listed twice")
seen.add((x[0], x[2]))
if int(x[3]) > 0:
rel[x[0]][x[2]] = int(x[3])
return rel
def read_run(path):
run = collections.defaultdict(dict)
with open(path) as f:
for n, line in enumerate(f, 1):
x = line.split()
if not x:
continue
if len(x) != 6:
raise ValueError(f"{path}:{n}: expected 'query_id Q0 passage_id rank score tag'")
score = float(x[4])
if not math.isfinite(score):
raise ValueError(f"{path}:{n}: score {x[4]} is not finite")
if x[2] in run[x[0]]:
raise ValueError(f"{path}:{n}: passage {x[2]} listed twice for query {x[0]}")
run[x[0]][x[2]] = score
return {q: [d for d, _ in sorted(s.items(), key=lambda kv: (-kv[1], kv[0]))] for q, s in run.items()}
def score(qrels, run):
out = collections.defaultdict(float)
for q, rel in qrels.items():
ranked = run.get(q, [])
rr = next((1.0 / (i + 1) for i, d in enumerate(ranked[:10]) if d in rel), 0.0)
dcg = sum(1.0 / math.log2(i + 2) for i, d in enumerate(ranked[:10]) if d in rel)
idcg = sum(1.0 / math.log2(i + 2) for i in range(min(10, len(rel))))
out["MRR@10"] += rr
out["nDCG@10"] += dcg / idcg
out["Recall@100"] += len(set(ranked[:100]) & set(rel)) / len(rel)
n = len(qrels)
return {k: v / n for k, v in out.items()}, n
def export_train(package, out):
import pyarrow.parquet as pq
n = 0
with open(out, "w") as f:
for path in sorted(glob.glob(os.path.join(package, "data", "qrels", "train-*.parquet"))):
t = pq.read_table(path)
for q, p, g in zip(t["query_id"].to_pylist(), t["passage_id"].to_pylist(), t["grade"].to_pylist()):
f.write(f"{q} 0 {p} {g}\n")
n += 1
return n
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--qrels")
ap.add_argument("--run")
ap.add_argument("--export-train-qrels")
ap.add_argument("--package", default=os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
a = ap.parse_args()
if a.export_train_qrels:
print(f"wrote {export_train(a.package, a.export_train_qrels):,} qrels lines to {a.export_train_qrels}")
return
if not (a.qrels and a.run):
ap.error("give --qrels and --run, or --export-train-qrels")
try:
metrics, n = score(read_qrels(a.qrels), read_run(a.run))
except ValueError as e:
sys.exit(f"error: {e}")
for k, v in metrics.items():
print(f"{k}\t{v:.6f}")
print(f"queries\t{n}")
if __name__ == "__main__":
main()