Rename results/by_model/uce_metrics.csv to benchmark results/by_model/uce_metrics.csv
4f97c01 verified | "Category ",Task,Prediction type,Cell population,Primary_site/cell type,Accuracy,Precision,Recall,F1 Score | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Overall,0.923,1,0.923,0.96 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Lung,0.961,1,0.961,0.98 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Pancreas,0.998,1,0.998,0.999 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Colorectal,0.983,1,0.983,0.991 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Cervical ,0.987,1,0.987,0.993 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Kidney,0.928,1,0.928,0.963 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Liver,0.936,1,0.936,0.967 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Ovarian,0.995,1,0.995,0.997 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Esophageal,0.903,1,0.903,0.949 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Gastric,0.976,1,0.976,0.988 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Breast,0.979,1,0.979,0.989 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Head-neck,0.79,1,0.79,0.883 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Glioma,0.347,1,0.347,0.515 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Lymphoma,0.801,1,0.801,0.89 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Melanoma,0.993,1,0.993,0.996 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Thyroid,0.808,1,0.808,0.894 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,DSRCT,0.999,1,0.999,0.999 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Myeloma,0.973,1,0.973,0.986 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Osteosarcoma,0.992,1,0.992,0.996 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Retinoblastoma,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Prostate,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Primary tumor cells ,Seminoma,0.825,1,0.825,0.904 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Overall,0.948,1,0.948,0.973 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Lung,0.984,1,0.984,0.992 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Pancreas,0.997,1,0.997,0.998 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Colorectal,0.925,1,0.925,0.961 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Liver,0.994,1,0.994,0.997 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Ovarian,0.96,1,0.96,0.98 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Gastric,0.869,1,0.869,0.93 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Breast,0.948,1,0.948,0.973 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Head-neck,0.96,1,0.96,0.98 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Melanoma,0.884,1,0.884,0.938 | |
| Tumor,Tumor cell identification,Binary,Metastatic tumor cells ,Thyroid,0.964,1,0.964,0.982 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Overall,0.425,1,0.425,0.597 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Lung,0.9,1,0.9,0.947 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Colorectal,0.059,1,0.059,0.111 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Liver,0.053,1,0.053,0.101 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Breast,0.46,1,0.46,0.63 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Melanoma,0.33,1,0.33,0.497 | |
| Tumor,Tumor cell identification,Binary,Circulating Tumor Cells,Prostate,0.935,1,0.935,0.966 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Overall,0.93,1,0.93,0.964 | |
| Tumor,Tumor cell identification,Binary,Normal cells,B cells,0.878,1,0.878,0.935 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Myeloid,0.861,1,0.861,0.925 | |
| Tumor,Tumor cell identification,Binary,Normal cells,T/NK cells,0.637,1,0.637,0.778 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Endothelial cells,0.903,1,0.903,0.949 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Epithelial cells,0.983,1,0.983,0.992 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Fibroblasts,0.893,1,0.893,0.943 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Mesenchymal cells,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Germ cells,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Neural stem cells,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Glioblasts,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Neuronal IPCs,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Neuron,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Astrocytes,0.88,1,0.88,0.936 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Oligodendrocytes,0.908,1,0.908,0.952 | |
| Tumor,Tumor cell identification,Binary,Normal cells,Microglias,1,1,1,1 | |
| Tumor,Tumor cell identification,Binary,Normal cells,OPCs,1,1,1,1 | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Overall,0.769,0.751 (Macro),0.781 (Macro),0.739 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Lung,0.107,0.059 (Macro),0.107 (Macro),0.193 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Pancreas,0.882,0.143 (Macro),0.882 (Macro),0.937 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Colorectal,0.939,0.200 (Macro),0.939 (Macro),0.969 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Cervical ,0.819,0.083 (Macro),0.819 (Macro),0.900 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Kidney,0.945,0.250 (Macro),0.945 (Macro),0.972 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Liver,0.346,0.083 (Macro),0.346 (Macro),0.514 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Ovarian,0.981,0.111 (Macro),0.981 (Macro),0.990 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Esophageal,0.462,0.091 (Macro),0.462 (Macro),0.632 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Gastric,0.488,0.067 (Macro),0.488 (Macro),0.656 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Breast,0.845,0.100 (Macro),0.845 (Macro),0.916 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Head-neck,0.357,0.250 (Macro),0.357 (Macro),0.526 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Glioma,0.999,0.500 (Macro),0.999 (Macro),0.999 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Lymphoma,0.922,0.167 (Macro),0.922 (Macro),0.959 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Melanoma,0.987,0.200 (Macro),0.987 (Macro),0.993 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Thyroid,0.813,0.071 (Macro),0.813 (Macro),0.897 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,DSRCT,0.993,0.200 (Macro),0.993 (Macro),0.996 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Myeloma,0.947,0.091 (Macro),0.947 (Macro),0.973 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Osteosarcoma,0.981,0.167 (Macro),0.981 (Macro),0.990 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Retinoblastoma,0.999,0.500 (Macro),0.999 (Macro),0.999 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Primary tumor cells ,Prostate,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Overall,0.658,0.318 (Macro),0.707 (Macro),0.593 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Lung,0.042,0.067 (Macro),0.042 (Macro),0.081 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Pancreas,0.983,0.200 (Macro),0.983 (Macro),0.991 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Colorectal,0.655,0.125 (Macro),0.655 (Macro),0.792 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Liver,0.992,0.250 (Macro),0.992 (Macro),0.996 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Ovarian,0.952,0.333 (Macro),0.952 (Macro),0.975 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Gastric,0.307,0.063 (Macro),0.307 (Macro),0.470 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Breast,0.85,0.167 (Macro),0.850 (Macro),0.919 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Head-neck,0.436,0.111 (Macro),0.436 (Macro),0.608 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Melanoma,0.969,0.250 (Macro),0.969 (Macro),0.984 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Metastatic tumor cells ,Thyroid,0.887,0.100 (Macro),0.887 (Macro),0.940 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Overall,0.157,0.194 (Macro),0.160 (Macro),0.342 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Lung,0,0.000 (Macro),0.000 (Macro),NA (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Colorectal,0,0.000 (Macro),0.000 (Macro),NA (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Liver,0.425,0.167 (Macro),0.425 (Macro),0.596 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Breast,0.064,0.071 (Macro),0.064 (Macro),0.120 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Melanoma,0.211,0.125 (Macro),0.211 (Macro),0.348 (Macro) | |
| Tumor,Primary site tracing,Multi-class,Circulating Tumor Cells,Prostate,0.26,0.091 (Macro),0.260 (Macro),0.412 (Macro) | |
| Stem,Stem cell identification,Binary,Stem.cell,Overall,0.979,1,0.979,0.989 | |
| Stem,Stem cell identification,Binary,Stem.cell,Hematopoietic Stem Cells,0.999,1,0.999,0.999 | |
| Stem,Stem cell identification,Binary,Stem.cell,Neural Stem Cells,0.934,1,0.934,0.966 | |
| Stem,Stem cell identification,Binary,Stem.cell,Mesenchymal Stem Cells,0.984,1,0.984,0.992 | |
| Stem,Stem cell identification,Binary,Stem.cell,Embryonic Stem Cells,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Overall,0.963,1,0.963,0.981 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Astrocytes,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,B.cells,0.999,1,0.999,0.999 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Endothelial cells,0.999,1,0.999,0.999 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Epithelial cells,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Fibroblasts,0.943,1,0.943,0.971 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Germ cells,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Glioblasts,0.743,1,0.743,0.853 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Microglias,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Myeloid cells,0.989,1,0.989,0.994 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Neuron,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Neuronal.IPCs ,0.816,1,0.816,0.899 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,Oligodendrocytes,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,OPCs,1,1,1,1 | |
| Stem,Stem cell identification,Binary,Non.Stem.cell,T/NK cells,0.999,1,0.999,0.999 | |
| Stem,Stem cell subtype classification,Multi-class,Stem.cell,Overall,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Stem,Stem cell subtype classification,Multi-class,Stem.cell,Hematopoietic Stem Cells,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Stem,Stem cell subtype classification,Multi-class,Stem.cell,Neural Stem Cells,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Stem,Stem cell subtype classification,Multi-class,Stem.cell,Mesenchymal Stem Cells,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Neural,Neural cell identification,Binary,Neural.cell,Overall,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Glutamatergic neurons,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Inhibitory interneurons,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Astrocytes,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Microglial cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Oligodendrocytes,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Neural.cell,Oligodendrocyte precursor cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Overall,0.984,1,0.984,0.992 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,B.cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Endothelial.cells,0.94,1,0.94,0.969 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Fibroblasts,0.982,1,0.982,0.991 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Mesenchymal.cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Myeloid,0.984,1,0.984,0.992 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,T/NK cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Epithelial cells,1,1,1,1 | |
| Neural,Neural cell identification,Binary,Non.Neural.cell,Germ cells,1,1,1,1 | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Overall,0.998,0.998 (Macro),0.998 (Macro),0.998 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Glutamatergic neurons,0.998,0.500 (Macro),0.998 (Macro),0.999 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Inhibitory interneurons,0.996,0.333 (Macro),0.996 (Macro),0.998 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Astrocytes,0.998,0.333 (Macro),0.998 (Macro),0.999 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Microglial cells,1,1.000 (Macro),1.000 (Macro),1.000 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Oligodendrocytes,0.998,0.500 (Macro),0.998 (Macro),0.999 (Macro) | |
| Neural,Neural cell subtype classification,Multi-class,Neural.cell,Oligodendrocyte precursor cells,0.999,0.500 (Macro),0.999 (Macro),0.999 (Macro) | |