Rename benchmark results/results_neural_cell_identification.csv to benchmark results/by_task/results_neural_cell_identification.csv
b30f932 verified | Model,Cell population,Cell type,Accuracy,Precision,Recall,F1 Score | |
| Geneformer,Neural.cell,Overall,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Glutamatergic neurons,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Inhibitory interneurons,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Astrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Microglial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Oligodendrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Neural.cell,Oligodendrocyte precursor cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Overall,0.811 ,1.000 ,0.811 ,0.895 | |
| Geneformer,Non.Neural.cell,B.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Endothelial.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Fibroblasts,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Mesenchymal.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Myeloid,0.837 ,1.000 ,0.837 ,0.911 | |
| Geneformer,Non.Neural.cell,T/NK cells,0.026 ,1.000 ,0.026 ,0.051 | |
| Geneformer,Non.Neural.cell,Epithelial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| Geneformer,Non.Neural.cell,Germ cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Overall,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Glutamatergic neurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Inhibitory interneurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Astrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Microglial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Oligodendrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Neural.cell,Oligodendrocyte precursor cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Non.Neural.cell,Overall,0.998 ,1.000 ,0.998 ,0.999 | |
| scFoundation,Non.Neural.cell,B.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Non.Neural.cell,Endothelial.cells,0.992 ,1.000 ,0.992 ,0.996 | |
| scFoundation,Non.Neural.cell,Fibroblasts,0.998 ,1.000 ,0.998 ,0.999 | |
| scFoundation,Non.Neural.cell,Mesenchymal.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Non.Neural.cell,Myeloid,0.996 ,1.000 ,0.996 ,0.998 | |
| scFoundation,Non.Neural.cell,T/NK cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Non.Neural.cell,Epithelial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scFoundation,Non.Neural.cell,Germ cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Overall,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Glutamatergic neurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Inhibitory interneurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Astrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Microglial cells,0.999 ,1.000 ,0.999 ,0.999 | |
| scGPT,Neural.cell,Oligodendrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Neural.cell,Oligodendrocyte precursor cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Non.Neural.cell,Overall,0.989 ,1.000 ,0.989 ,0.995 | |
| scGPT,Non.Neural.cell,B.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Non.Neural.cell,Endothelial.cells,0.965 ,1.000 ,0.965 ,0.982 | |
| scGPT,Non.Neural.cell,Fibroblasts,0.986 ,1.000 ,0.986 ,0.993 | |
| scGPT,Non.Neural.cell,Mesenchymal.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Non.Neural.cell,Myeloid,0.984 ,1.000 ,0.984 ,0.992 | |
| scGPT,Non.Neural.cell,T/NK cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Non.Neural.cell,Epithelial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scGPT,Non.Neural.cell,Germ cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Overall,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Glutamatergic neurons,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Inhibitory interneurons,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Astrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Microglial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Oligodendrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Neural.cell,Oligodendrocyte precursor cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Non.Neural.cell,Overall,0.984 ,1.000 ,0.984 ,0.992 | |
| UCE,Non.Neural.cell,B.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Non.Neural.cell,Endothelial.cells,0.940 ,1.000 ,0.940 ,0.969 | |
| UCE,Non.Neural.cell,Fibroblasts,0.982 ,1.000 ,0.982 ,0.991 | |
| UCE,Non.Neural.cell,Mesenchymal.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Non.Neural.cell,Myeloid,0.984 ,1.000 ,0.984 ,0.992 | |
| UCE,Non.Neural.cell,T/NK cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Non.Neural.cell,Epithelial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| UCE,Non.Neural.cell,Germ cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Overall,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Glutamatergic neurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Inhibitory interneurons,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Astrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Microglial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Oligodendrocytes,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Neural.cell,Oligodendrocyte precursor cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Non.Neural.cell,Overall,0.993 ,1.000 ,0.993 ,0.997 | |
| scLong,Non.Neural.cell,B.cells,0.987 ,1.000 ,0.987 ,0.993 | |
| scLong,Non.Neural.cell,Endothelial.cells,0.993 ,1.000 ,0.993 ,0.996 | |
| scLong,Non.Neural.cell,Fibroblasts,0.993 ,1.000 ,0.993 ,0.996 | |
| scLong,Non.Neural.cell,Mesenchymal.cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Non.Neural.cell,Myeloid,0.990 ,1.000 ,0.990 ,0.995 | |
| scLong,Non.Neural.cell,T/NK cells,0.998 ,1.000 ,0.998 ,0.999 | |
| scLong,Non.Neural.cell,Epithelial cells,1.000 ,1.000 ,1.000 ,1.000 | |
| scLong,Non.Neural.cell,Germ cells,1.000 ,1.000 ,1.000 ,1.000 | |