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README.md
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> `.h5ad` files are not natively supported by the Hugging Face Dataset Viewer.
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> Users are expected to download the files and load them locally using standard single-cell analysis tools such as **Scanpy** or **Seurat**.
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### Directory Structure
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SingleCell-Unseen-Benchmark/
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├── tumor/ # Tumor cell datasets (.h5ad)
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├── stem/ # Stem cell datasets (.h5ad)
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├── neural/ # Neural cell datasets (.h5ad)
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├── normal/ # Normal cell datasets (.h5ad)
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├── results/ # Benchmark results
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└── README.md
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## Benchmark Results
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In addition to raw datasets, we provide **complete benchmark evaluation results** under the `results/` directory.
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### Results Organization
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results/
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├── by_model/
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│ ├── geneformer/
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│ │ ├── tumor_identification.csv
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│ │ ├── primary_site_tracing.csv
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│ │ └── ...
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│ ├── scfoundation/
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│ ├── scgpt/
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│ ├── uce/
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│ └── sclong/
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└── by_task/
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├── tumor_identification.csv
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├── primary_site_tracing.csv
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├── stem_identification.csv
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└── ...
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### Design Rationale
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> `.h5ad` files are not natively supported by the Hugging Face Dataset Viewer.
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> Users are expected to download the files and load them locally using standard single-cell analysis tools such as **Scanpy** or **Seurat**.
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## Benchmark Results
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In addition to raw datasets, we provide **complete benchmark evaluation results** under the `results/` directory.
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### Design Rationale
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