Model,Cell population,Cell type,Accuracy,Precision,Recall,F1 Score
Geneformer,Stem.cell,Overall,1,1,1,1
Geneformer,Stem.cell,Hematopoietic Stem Cells,1,1,1,1
Geneformer,Stem.cell,Neural Stem Cells,1,1,1,1
Geneformer,Stem.cell,Mesenchymal Stem Cells,1,1,1,1
Geneformer,Stem.cell,Embryonic Stem Cells,1,1,1,1
Geneformer,Non.Stem.cell,Overall,0.522,1,0.522,0.686
Geneformer,Non.Stem.cell,Astrocytes,1,1,1,1
Geneformer,Non.Stem.cell,B.cells,1,1,1,1
Geneformer,Non.Stem.cell,Endothelial cells,1,1,1,1
Geneformer,Non.Stem.cell,Epithelial cells,1,1,1,1
Geneformer,Non.Stem.cell,Fibroblasts,1,1,1,1
Geneformer,Non.Stem.cell,Germ cells,1,1,1,1
Geneformer,Non.Stem.cell,Glioblasts,0.997,1,0.997,0.998
Geneformer,Non.Stem.cell,Microglias,0.306,1,0.306,0.469
Geneformer,Non.Stem.cell,Myeloid cells,0,0,0,0
Geneformer,Non.Stem.cell,Neuron,0,0,0,0
Geneformer,Non.Stem.cell,Neuronal.IPCs ,0,0,0,0
Geneformer,Non.Stem.cell,Oligodendrocytes,0,0,0,0
Geneformer,Non.Stem.cell,OPCs,0,0,0,0
Geneformer,Non.Stem.cell,T/NK cells,0,0,0,0
scFoundation,Stem.cell,Overall,0.979,1,0.979,0.989
scFoundation,Stem.cell,Hematopoietic Stem Cells,0.998,1,0.998,0.999
scFoundation,Stem.cell,Neural Stem Cells,0.947,1,0.947,0.973
scFoundation,Stem.cell,Mesenchymal Stem Cells,0.971,1,0.971,0.985
scFoundation,Stem.cell,Embryonic Stem Cells,1,1,1,1
scFoundation,Non.Stem.cell,Overall,0.961,1,0.961,0.98
scFoundation,Non.Stem.cell,Astrocytes,1,1,1,1
scFoundation,Non.Stem.cell,B.cells,0.987,1,0.987,0.993
scFoundation,Non.Stem.cell,Endothelial cells,0.998,1,0.998,0.999
scFoundation,Non.Stem.cell,Epithelial cells,1,1,1,1
scFoundation,Non.Stem.cell,Fibroblasts,0.906,1,0.906,0.951
scFoundation,Non.Stem.cell,Germ cells,1,1,1,1
scFoundation,Non.Stem.cell,Glioblasts,0.732,1,0.732,0.845
scFoundation,Non.Stem.cell,Microglias,1,1,1,1
scFoundation,Non.Stem.cell,Myeloid cells,0.981,1,0.981,0.99
scFoundation,Non.Stem.cell,Neuron,1,1,1,1
scFoundation,Non.Stem.cell,Neuronal.IPCs ,0.857,1,0.857,0.923
scFoundation,Non.Stem.cell,Oligodendrocytes,1,1,1,1
scFoundation,Non.Stem.cell,OPCs,1,1,1,1
scFoundation,Non.Stem.cell,T/NK cells,0.996,1,0.996,0.998
scGPT,Stem.cell,Overall,0.964,1,0.964,0.982
scGPT,Stem.cell,Hematopoietic Stem Cells,0.936,1,0.936,0.967
scGPT,Stem.cell,Neural Stem Cells,0.94,1,0.94,0.969
scGPT,Stem.cell,Mesenchymal Stem Cells,0.982,1,0.982,0.991
scGPT,Stem.cell,Embryonic Stem Cells,0.997,1,0.997,0.998
scGPT,Non.Stem.cell,Overall,0.957,1,0.957,0.978
scGPT,Non.Stem.cell,Astrocytes,1,1,1,1
scGPT,Non.Stem.cell,B.cells,0.998,1,0.998,0.999
scGPT,Non.Stem.cell,Endothelial cells,1,1,1,1
scGPT,Non.Stem.cell,Epithelial cells,1,1,1,1
scGPT,Non.Stem.cell,Fibroblasts,0.931,1,0.931,0.964
scGPT,Non.Stem.cell,Germ cells,1,1,1,1
scGPT,Non.Stem.cell,Glioblasts,0.675,1,0.675,0.806
scGPT,Non.Stem.cell,Microglias,1,1,1,1
scGPT,Non.Stem.cell,Myeloid cells,0.992,1,0.992,0.996
scGPT,Non.Stem.cell,Neuron,1,1,1,1
scGPT,Non.Stem.cell,Neuronal.IPCs ,0.807,1,0.807,0.893
scGPT,Non.Stem.cell,Oligodendrocytes,0.998,1,0.998,0.999
scGPT,Non.Stem.cell,OPCs,1,1,1,1
scGPT,Non.Stem.cell,T/NK cells,0.996,1,0.996,0.998
UCE,Stem.cell,Overall,0.979,1,0.979,0.989
UCE,Stem.cell,Hematopoietic Stem Cells,0.999,1,0.999,0.999
UCE,Stem.cell,Neural Stem Cells,0.934,1,0.934,0.966
UCE,Stem.cell,Mesenchymal Stem Cells,0.984,1,0.984,0.992
UCE,Stem.cell,Embryonic Stem Cells,1,1,1,1
UCE,Non.Stem.cell,Overall,0.963,1,0.963,0.981
UCE,Non.Stem.cell,Astrocytes,1,1,1,1
UCE,Non.Stem.cell,B.cells,0.999,1,0.999,0.999
UCE,Non.Stem.cell,Endothelial cells,0.999,1,0.999,0.999
UCE,Non.Stem.cell,Epithelial cells,1,1,1,1
UCE,Non.Stem.cell,Fibroblasts,0.943,1,0.943,0.971
UCE,Non.Stem.cell,Germ cells,1,1,1,1
UCE,Non.Stem.cell,Glioblasts,0.743,1,0.743,0.853
UCE,Non.Stem.cell,Microglias,1,1,1,1
UCE,Non.Stem.cell,Myeloid cells,0.989,1,0.989,0.994
UCE,Non.Stem.cell,Neuron,1,1,1,1
UCE,Non.Stem.cell,Neuronal.IPCs ,0.816,1,0.816,0.899
UCE,Non.Stem.cell,Oligodendrocytes,1,1,1,1
UCE,Non.Stem.cell,OPCs,1,1,1,1
UCE,Non.Stem.cell,T/NK cells,0.999,1,0.999,0.999
scLong,Stem.cell,Overall,0.904,1,0.904,0.95
scLong,Stem.cell,Hematopoietic Stem Cells,0.989,1,0.989,0.994
scLong,Stem.cell,Neural Stem Cells,0.8,1,0.8,0.889
scLong,Stem.cell,Mesenchymal Stem Cells,0.83,1,0.83,0.907
scLong,Stem.cell,Embryonic Stem Cells,0.997,1,0.997,0.998
scLong,Non.Stem.cell,Overall,0.704,1,0.704,0.827
scLong,Non.Stem.cell,Astrocytes,0.994,1,0.994,0.997
scLong,Non.Stem.cell,B.cells,0.74,1,0.74,0.851
scLong,Non.Stem.cell,Endothelial cells,0.627,1,0.627,0.771
scLong,Non.Stem.cell,Epithelial cells,0.5,1,0.5,0.667
scLong,Non.Stem.cell,Fibroblasts,0.281,1,0.281,0.439
scLong,Non.Stem.cell,Germ cells,0.929,1,0.929,0.963
scLong,Non.Stem.cell,Glioblasts,0.425,1,0.425,0.596
scLong,Non.Stem.cell,Microglias,0.993,1,0.993,0.996
scLong,Non.Stem.cell,Myeloid cells,0.613,1,0.613,0.76
scLong,Non.Stem.cell,Neuron,1,1,1,1
scLong,Non.Stem.cell,Neuronal.IPCs ,0.263,1,0.263,0.416
scLong,Non.Stem.cell,Oligodendrocytes,0.995,1,0.995,0.997
scLong,Non.Stem.cell,OPCs,0.997,1,0.997,0.998
scLong,Non.Stem.cell,T/NK cells,0.505,1,0.505,0.671