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Upload change_lineage.py

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  1. change_lineage.py +117 -0
change_lineage.py ADDED
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+ import json
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+ import pickle
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+ import numpy as np
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+ import os
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+
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+
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+ def convert_lineage_to_split_genealogy(
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+ lineage_json_path: str,
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+ save_pkl_path: str,
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+ max_children: int = 8, # merge后每个粗点平均对应4个细点,留余量
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+ ):
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+ """
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+ 正确的转换方向:
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+
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+ lineage["L1"][i] = [a, b, c, d]
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+ 含义:L1第i个粗点 由 L0中的a,b,c,d细点 merge而来
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+ 反转:L1第i个粗点 → 子节点是 L0中的 a,b,c,d
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+
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+ genealogy[1]['children_ids'] shape (N_L1粗, max_children)
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+ 含义:L1第i个粗点,在L0中对应的细节点索引
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+
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+ 使用时:
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+ 父节点 = L3/L2/L1 的粗粒度高斯点
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+ 子节点 = 更细粒度的高斯点(向原始方向展开)
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+ 序列:L3(粗)→L2(细)→L1(更细)→L0(原始)
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+ """
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+ print(f"[convert] 加载 {lineage_json_path}")
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+ with open(lineage_json_path, 'r') as f:
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+ lineage = json.load(f)
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+
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+ genealogy = {}
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+
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+ # 注意方向:粗→细,所以 key 含义变了
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+ # genealogy[1]: L1粗节点 → L0细节点
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+ # genealogy[2]: L2粗节点 → L1细节点
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+ # genealogy[3]: L3粗节点 → L2细节点
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+ level_map = {
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+ "L1": 1,
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+ "L2": 2,
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+ "L3": 3,
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+ }
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+
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+ for level_name, gen_key in level_map.items():
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+ if level_name not in lineage:
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+ continue
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+
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+ # merge_list[粗点索引] = [细点索引, ...]
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+ merge_list = lineage[level_name]
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+ n_coarse = len(merge_list)
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+
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+ # 统计每个粗点有多少个细点
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+ child_counts = [len(parents) for parents in merge_list]
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+ max_actual = max(child_counts)
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+ avg_actual = np.mean(child_counts)
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+ print(f"[convert] {level_name}(粗→细方向):")
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+ print(f" 粗节点数={n_coarse}")
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+ print(f" 每个粗节点平均对应细节点数={avg_actual:.2f}")
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+ print(f" 最多子节点数={max_actual}")
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+
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+ # 直接用 merge_list 构建 children_ids
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+ # merge_list[i] 就是 L(k-1)_粗节点i 对应的所有 L(k-2)_细节点索引
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+ actual_max = min(max_actual, max_children)
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+ children_ids = np.full((n_coarse, actual_max), fill_value=-1, dtype=np.int32)
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+
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+ truncated = 0
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+ for coarse_idx, fine_indices in enumerate(merge_list):
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+ n = min(len(fine_indices), actual_max)
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+ children_ids[coarse_idx, :n] = fine_indices[:n]
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+ if len(fine_indices) > actual_max:
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+ truncated += 1
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+
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+ if truncated:
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+ print(f" ⚠️ {truncated} 个粗节点子节点数超过{actual_max}被截断")
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+
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+ genealogy[gen_key] = {
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+ 'children_ids': children_ids, # (N_coarse, max_children)
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+ }
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+
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+ with open(save_pkl_path, 'wb') as f:
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+ pickle.dump(genealogy, f, protocol=4)
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+
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+ size_mb = os.path.getsize(save_pkl_path) / 1024 / 1024
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+ print(f"\n[convert] 已保存 → {save_pkl_path} ({size_mb:.2f} MB)")
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+ return genealogy
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+
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+
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+ def verify(lineage_json_path, genealogy_pkl_path, n_sample=5):
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+ with open(lineage_json_path, 'r') as f:
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+ lineage = json.load(f)
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+ with open(genealogy_pkl_path, 'rb') as f:
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+ genealogy = pickle.load(f)
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+
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+ print("\n[verify] 抽查:粗节点的子节点应与 lineage 一致")
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+ for level_name, gen_key in [("L1", 1), ("L2", 2), ("L3", 3)]:
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+ if level_name not in lineage or gen_key not in genealogy:
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+ continue
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+ merge_list = lineage[level_name]
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+ children_ids = genealogy[gen_key]['children_ids']
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+ sample_idx = np.random.choice(len(merge_list), min(n_sample, len(merge_list)), replace=False)
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+ errors = 0
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+ for i in sample_idx:
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+ expected = set(merge_list[i])
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+ actual = set(int(x) for x in children_ids[i] if x >= 0)
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+ if not expected.issubset(actual):
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+ print(f" ❌ {level_name}[{i}]: expected={expected}, actual={actual}")
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+ errors += 1
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+ if errors == 0:
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+ print(f" ✅ {level_name}:{len(sample_idx)} 个粗节点验证通过")
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+
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+
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+ if __name__ == '__main__':
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+ genealogy = convert_lineage_to_split_genealogy(
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+ lineage_json_path="outputs/lineage.json",
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+ save_pkl_path="outputs/genealogy.pkl",
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+ max_children=4,
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+ )
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+ verify("outputs/lineage.json", "outputs/genealogy.pkl", n_sample=10)