Create README.md
Browse files
README.md
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset_info:
|
| 2 |
+
features:
|
| 3 |
+
- name: tumor_bam
|
| 4 |
+
dtype: binary
|
| 5 |
+
- name: normal_bam
|
| 6 |
+
dtype: binary
|
| 7 |
+
splits:
|
| 8 |
+
- {name: hcc1143, num_bytes: "XX GB"}
|
| 9 |
+
license: cc-by-4.0
|
| 10 |
+
task_categories:
|
| 11 |
+
- bioinformatics
|
| 12 |
+
- neoantigen-prediction
|
| 13 |
+
---
|
| 14 |
+
|
| 15 |
+
# OpenVaxGen HCC1143 Dataset
|
| 16 |
+
|
| 17 |
+
## Overview
|
| 18 |
+
HCC1143 breast cancer cell line tumor/normal BAM files (hg38 aligned) for proof-of-concept mRNA vaccine design. Public data from ATCC/DepMap/CCLE—no patient info, fully open for research.[web:54][web:57]
|
| 19 |
+
|
| 20 |
+
full genome tumor and normal in the full data
|
| 21 |
+
chr 17 in the test data
|
| 22 |
+
chr 6 and alt contig related stuff in hla
|