{ "PARSE_PROTEIN": 1, "PARSE_DNA": 1, "PARSE_RNA": 1, "PARSE_RNA_AS_DNA": 0, "NA_SHARED_TOKENS": 1, "NA_REF_ATOM": "C1'", "INCLUDE_PRED_NA_N": 1, "PROTEIN_BACKBONE_OCC_CUTOFF" : 0.8, "PROTEIN_SIDE_CHAIN_OCC_CUTOFF": 0.5, "DNA_BACKBONE_OCC_CUTOFF" : 0.8, "DNA_SIDE_CHAIN_OCC_CUTOFF": 0.5, "RNA_BACKBONE_OCC_CUTOFF" : 0.8, "RNA_SIDE_CHAIN_OCC_CUTOFF": 0.5, "LIGAND_OCC_CUTOFF": 0.01, "BATCH_TOKENS" : 6000, "EXCLUDE_RES" : ["HOH", "NA", "CL", "K", "BR"], "RANDOMIZE_NMR_MODEL" : 0, "CROP_LARGE_STRUCTURES" : 0, "MIN_OVERLAP_LENGTH": 5, "NUM_NEIGHBORS": 48, "ATOMS_TO_LOAD" : "all" }