Add 4jlj
Browse files- 4jlj_ligand.mol2 +108 -0
- 4jlj_ligand.sdf +98 -0
- 4jlj_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 4jlj_protein_processed_fix.pdb +0 -0
4jlj_ligand.mol2
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:13:18 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
4jlj_ligand
|
| 7 |
+
45 47 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 FAD -35.9100 8.4440 2.0140 F 1 1NM -0.2463
|
| 14 |
+
2 CAJ -36.4120 8.0900 0.5490 C.3 1 1NM 0.1173
|
| 15 |
+
3 CAK -35.8030 9.0180 -0.5170 C.3 1 1NM 0.0961
|
| 16 |
+
4 OAQ -36.7030 9.0820 -1.6540 O.3 1 1NM -0.3180
|
| 17 |
+
5 CAZ -36.4710 10.0710 -2.5640 C.ar 1 1NM 0.1254
|
| 18 |
+
6 CAI -35.1850 10.4850 -2.9530 C.ar 1 1NM -0.0255
|
| 19 |
+
7 CAY -37.6160 10.6490 -3.1250 C.ar 1 1NM 0.1259
|
| 20 |
+
8 OAP -38.8160 10.1820 -2.7070 O.3 1 1NM -0.3206
|
| 21 |
+
9 CAA -39.8940 10.8620 -3.3820 C.3 1 1NM 0.0585
|
| 22 |
+
10 CAF -37.5220 11.6630 -4.0700 C.ar 1 1NM -0.0344
|
| 23 |
+
11 CAE -36.2490 12.0870 -4.4420 C.ar 1 1NM -0.0645
|
| 24 |
+
12 CAW -35.0940 11.5060 -3.9010 C.ar 1 1NM 0.0005
|
| 25 |
+
13 CBA -33.9400 12.0090 -4.3180 C.2 1 1NM 0.0976
|
| 26 |
+
14 NAO -32.7530 11.8760 -3.7250 N.2 1 1NM -0.3103
|
| 27 |
+
15 SAS -33.7910 12.9730 -5.6440 S.3 1 1NM -0.0232
|
| 28 |
+
16 CAG -32.1390 13.2200 -5.4650 C.2 1 1NM 0.0032
|
| 29 |
+
17 CAV -31.7700 12.5410 -4.3680 C.2 1 1NM 0.0098
|
| 30 |
+
18 CAL -30.3100 12.5150 -3.8740 C.3 1 1NM 0.0467
|
| 31 |
+
19 SAR -29.4760 10.9250 -4.2650 S.3 1 1NM -0.0518
|
| 32 |
+
20 C2 -27.7830 11.2900 -4.1340 C.ar 1 1NM 0.1334
|
| 33 |
+
21 N3 -26.9000 10.2650 -4.2370 N.ar 1 1NM -0.2611
|
| 34 |
+
22 N1 -27.3620 12.5660 -3.9650 N.ar 1 1NM -0.2611
|
| 35 |
+
23 C6 -26.0600 12.8160 -3.8850 C.ar 1 1NM 0.1021
|
| 36 |
+
24 NAB -25.6720 14.0660 -3.7360 N.pl3 1 1NM -0.3204
|
| 37 |
+
25 C5 -25.1240 11.7680 -3.9700 C.ar 1 1NM 0.0131
|
| 38 |
+
26 C4 -25.5900 10.4680 -4.1490 C.ar 1 1NM 0.1021
|
| 39 |
+
27 NAC -24.7310 9.4440 -4.2640 N.pl3 1 1NM -0.3204
|
| 40 |
+
28 H -37.5073 8.1860 0.5175 H 1 1NM 0.0642
|
| 41 |
+
29 H -36.1280 7.0525 0.3187 H 1 1NM 0.0642
|
| 42 |
+
30 H -34.8289 8.6213 -0.8390 H 1 1NM 0.0635
|
| 43 |
+
31 H -35.6677 10.0252 -0.0960 H 1 1NM 0.0635
|
| 44 |
+
32 H -34.2965 10.0282 -2.5323 H 1 1NM 0.0544
|
| 45 |
+
33 H -40.8568 10.4662 -3.0265 H 1 1NM 0.0576
|
| 46 |
+
34 H -39.8085 10.6988 -4.4665 H 1 1NM 0.0576
|
| 47 |
+
35 H -39.8390 11.9395 -3.1678 H 1 1NM 0.0576
|
| 48 |
+
36 H -38.4099 12.1091 -4.5032 H 1 1NM 0.0529
|
| 49 |
+
37 H -36.1488 12.8860 -5.1677 H 1 1NM 0.0547
|
| 50 |
+
38 H -31.4947 13.8139 -6.1116 H 1 1NM 0.0584
|
| 51 |
+
39 H -30.3018 12.6610 -2.7838 H 1 1NM 0.0546
|
| 52 |
+
40 H -29.7572 13.3337 -4.3578 H 1 1NM 0.0546
|
| 53 |
+
41 H -24.6686 14.2895 -3.6711 H 1 1NM 0.1796
|
| 54 |
+
42 H -26.3720 14.8198 -3.6844 H 1 1NM 0.1796
|
| 55 |
+
43 H -24.0613 11.9690 -3.8975 H 1 1NM 0.0494
|
| 56 |
+
44 H -23.7172 9.6119 -4.1943 H 1 1NM 0.1796
|
| 57 |
+
45 H -25.0853 8.4898 -4.4220 H 1 1NM 0.1796
|
| 58 |
+
@<TRIPOS>BOND
|
| 59 |
+
1 1 2 1
|
| 60 |
+
2 2 3 1
|
| 61 |
+
3 3 4 1
|
| 62 |
+
4 4 5 1
|
| 63 |
+
5 5 6 ar
|
| 64 |
+
6 5 7 ar
|
| 65 |
+
7 6 12 ar
|
| 66 |
+
8 7 8 1
|
| 67 |
+
9 7 10 ar
|
| 68 |
+
10 8 9 1
|
| 69 |
+
11 10 11 ar
|
| 70 |
+
12 11 12 ar
|
| 71 |
+
13 12 13 1
|
| 72 |
+
14 13 14 2
|
| 73 |
+
15 13 15 1
|
| 74 |
+
16 14 17 1
|
| 75 |
+
17 15 16 1
|
| 76 |
+
18 16 17 2
|
| 77 |
+
19 17 18 1
|
| 78 |
+
20 18 19 1
|
| 79 |
+
21 19 20 1
|
| 80 |
+
22 20 21 ar
|
| 81 |
+
23 20 22 ar
|
| 82 |
+
24 21 26 ar
|
| 83 |
+
25 22 23 ar
|
| 84 |
+
26 23 24 1
|
| 85 |
+
27 23 25 ar
|
| 86 |
+
28 25 26 ar
|
| 87 |
+
29 26 27 1
|
| 88 |
+
30 2 28 1
|
| 89 |
+
31 2 29 1
|
| 90 |
+
32 3 30 1
|
| 91 |
+
33 3 31 1
|
| 92 |
+
34 6 32 1
|
| 93 |
+
35 9 33 1
|
| 94 |
+
36 9 34 1
|
| 95 |
+
37 9 35 1
|
| 96 |
+
38 10 36 1
|
| 97 |
+
39 11 37 1
|
| 98 |
+
40 16 38 1
|
| 99 |
+
41 18 39 1
|
| 100 |
+
42 18 40 1
|
| 101 |
+
43 24 41 1
|
| 102 |
+
44 24 42 1
|
| 103 |
+
45 25 43 1
|
| 104 |
+
46 27 44 1
|
| 105 |
+
47 27 45 1
|
| 106 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 107 |
+
1 1NM 1
|
| 108 |
+
|
4jlj_ligand.sdf
ADDED
|
@@ -0,0 +1,98 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
4jlj_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
45 47 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-35.9100 8.4440 2.0140 F 0 0 0 0 0
|
| 6 |
+
-36.4120 8.0900 0.5490 C 0 0 0 0 0
|
| 7 |
+
-35.8030 9.0180 -0.5170 C 0 0 0 0 0
|
| 8 |
+
-36.7030 9.0820 -1.6540 O 0 0 0 0 0
|
| 9 |
+
-36.4710 10.0710 -2.5640 C 0 0 0 0 0
|
| 10 |
+
-35.1850 10.4850 -2.9530 C 0 0 0 0 0
|
| 11 |
+
-37.6160 10.6490 -3.1250 C 0 0 0 0 0
|
| 12 |
+
-38.8160 10.1820 -2.7070 O 0 0 0 0 0
|
| 13 |
+
-39.8940 10.8620 -3.3820 C 0 0 0 0 0
|
| 14 |
+
-37.5220 11.6630 -4.0700 C 0 0 0 0 0
|
| 15 |
+
-36.2490 12.0870 -4.4420 C 0 0 0 0 0
|
| 16 |
+
-35.0940 11.5060 -3.9010 C 0 0 0 0 0
|
| 17 |
+
-33.9400 12.0090 -4.3180 C 0 0 0 0 0
|
| 18 |
+
-32.7530 11.8760 -3.7250 N 0 0 0 0 0
|
| 19 |
+
-33.7910 12.9730 -5.6440 S 0 0 0 0 0
|
| 20 |
+
-32.1390 13.2200 -5.4650 C 0 0 0 0 0
|
| 21 |
+
-31.7700 12.5410 -4.3680 C 0 0 0 0 0
|
| 22 |
+
-30.3100 12.5150 -3.8740 C 0 0 0 0 0
|
| 23 |
+
-29.4760 10.9250 -4.2650 S 0 0 0 0 0
|
| 24 |
+
-27.7830 11.2900 -4.1340 C 0 0 0 0 0
|
| 25 |
+
-26.9000 10.2650 -4.2370 N 0 0 0 0 0
|
| 26 |
+
-27.3620 12.5660 -3.9650 N 0 0 0 0 0
|
| 27 |
+
-26.0600 12.8160 -3.8850 C 0 0 0 0 0
|
| 28 |
+
-25.6720 14.0660 -3.7360 N 0 0 0 0 0
|
| 29 |
+
-25.1240 11.7680 -3.9700 C 0 0 0 0 0
|
| 30 |
+
-25.5900 10.4680 -4.1490 C 0 0 0 0 0
|
| 31 |
+
-24.7310 9.4440 -4.2640 N 0 0 0 0 0
|
| 32 |
+
-37.4950 8.2111 0.5241 H 0 0 0 0 0
|
| 33 |
+
-36.1048 7.0687 0.3237 H 0 0 0 0 0
|
| 34 |
+
-34.8353 8.6295 -0.8344 H 0 0 0 0 0
|
| 35 |
+
-35.6635 10.0157 -0.1008 H 0 0 0 0 0
|
| 36 |
+
-34.2916 10.0257 -2.5300 H 0 0 0 0 0
|
| 37 |
+
-39.8383 11.9295 -3.1690 H 0 0 0 0 0
|
| 38 |
+
-39.8081 10.6996 -4.4564 H 0 0 0 0 0
|
| 39 |
+
-40.8474 10.4690 -3.0289 H 0 0 0 0 0
|
| 40 |
+
-38.4148 12.1116 -4.5056 H 0 0 0 0 0
|
| 41 |
+
-36.1483 12.8904 -5.1718 H 0 0 0 0 0
|
| 42 |
+
-31.4941 13.8145 -6.1122 H 0 0 0 0 0
|
| 43 |
+
-30.3153 12.6388 -2.7911 H 0 0 0 0 0
|
| 44 |
+
-29.7671 13.3160 -4.3757 H 0 0 0 0 0
|
| 45 |
+
-26.3652 14.8125 -3.6849 H 0 0 0 0 0
|
| 46 |
+
-24.6784 14.2874 -3.6717 H 0 0 0 0 0
|
| 47 |
+
-24.0554 11.9701 -3.8971 H 0 0 0 0 0
|
| 48 |
+
-25.0819 8.4991 -4.4205 H 0 0 0 0 0
|
| 49 |
+
-23.7270 9.6103 -4.1950 H 0 0 0 0 0
|
| 50 |
+
1 2 1 0 0 0
|
| 51 |
+
2 3 1 0 0 0
|
| 52 |
+
3 4 1 0 0 0
|
| 53 |
+
4 5 1 0 0 0
|
| 54 |
+
5 6 4 0 0 0
|
| 55 |
+
5 7 4 0 0 0
|
| 56 |
+
6 12 4 0 0 0
|
| 57 |
+
7 8 1 0 0 0
|
| 58 |
+
7 10 4 0 0 0
|
| 59 |
+
8 9 1 0 0 0
|
| 60 |
+
10 11 4 0 0 0
|
| 61 |
+
11 12 4 0 0 0
|
| 62 |
+
12 13 1 0 0 0
|
| 63 |
+
13 14 4 0 0 0
|
| 64 |
+
13 15 4 0 0 0
|
| 65 |
+
14 17 4 0 0 0
|
| 66 |
+
15 16 4 0 0 0
|
| 67 |
+
16 17 4 0 0 0
|
| 68 |
+
17 18 1 0 0 0
|
| 69 |
+
18 19 1 0 0 0
|
| 70 |
+
19 20 1 0 0 0
|
| 71 |
+
20 21 4 0 0 0
|
| 72 |
+
20 22 4 0 0 0
|
| 73 |
+
21 26 4 0 0 0
|
| 74 |
+
22 23 4 0 0 0
|
| 75 |
+
23 24 1 0 0 0
|
| 76 |
+
23 25 4 0 0 0
|
| 77 |
+
25 26 4 0 0 0
|
| 78 |
+
26 27 1 0 0 0
|
| 79 |
+
2 28 1 0 0 0
|
| 80 |
+
2 29 1 0 0 0
|
| 81 |
+
3 30 1 0 0 0
|
| 82 |
+
3 31 1 0 0 0
|
| 83 |
+
6 32 1 0 0 0
|
| 84 |
+
9 33 1 0 0 0
|
| 85 |
+
9 34 1 0 0 0
|
| 86 |
+
9 35 1 0 0 0
|
| 87 |
+
10 36 1 0 0 0
|
| 88 |
+
11 37 1 0 0 0
|
| 89 |
+
16 38 1 0 0 0
|
| 90 |
+
18 39 1 0 0 0
|
| 91 |
+
18 40 1 0 0 0
|
| 92 |
+
24 41 1 0 0 0
|
| 93 |
+
24 42 1 0 0 0
|
| 94 |
+
25 43 1 0 0 0
|
| 95 |
+
27 44 1 0 0 0
|
| 96 |
+
27 45 1 0 0 0
|
| 97 |
+
M END
|
| 98 |
+
$$$$
|
4jlj_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
4jlj_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|