Add batch 105
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1ai7/1ai7_ligand.mol2 +42 -0
- 1ai7/1ai7_ligand.sdf +32 -0
- 1ai7/1ai7_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ai7/1ai7_protein_processed_fix.pdb +0 -0
- 1ao0/1ao0_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ao0/1ao0_protein_processed_fix.pdb +0 -0
- 1fd0/1fd0_ligand.mol2 +131 -0
- 1fd0/1fd0_ligand.sdf +123 -0
- 1fd0/1fd0_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1fd0/1fd0_protein_processed_fix.pdb +0 -0
- 1gj8/1gj8_ligand.mol2 +108 -0
- 1gj8/1gj8_ligand.sdf +94 -0
- 1gj8/1gj8_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1gj8/1gj8_protein_processed_fix.pdb +0 -0
- 1i32/1i32_ligand.mol2 +165 -0
- 1i32/1i32_ligand.sdf +155 -0
- 1i32/1i32_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1i32/1i32_protein_processed_fix.pdb +0 -0
- 1i33/1i33_ligand.mol2 +167 -0
- 1i33/1i33_ligand.sdf +157 -0
- 1i33/1i33_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1i33/1i33_protein_processed_fix.pdb +0 -0
- 1lhc/1lhc_ligand.mol2 +151 -0
- 1lhc/1lhc_ligand.sdf +139 -0
- 1lhc/1lhc_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1lhc/1lhc_protein_processed_fix.pdb +0 -0
- 1o3j/1o3j_ligand.mol2 +88 -0
- 1o3j/1o3j_ligand.sdf +74 -0
- 1o3j/1o3j_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1o3j/1o3j_protein_processed_fix.pdb +0 -0
- 1pxp/1pxp_ligand.mol2 +102 -0
- 1pxp/1pxp_ligand.sdf +92 -0
- 1pxp/1pxp_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1pxp/1pxp_protein_processed_fix.pdb +0 -0
- 1uu9/1uu9_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1uu9/1uu9_protein_processed_fix.pdb +0 -0
- 1x7b/1x7b_ligand.mol2 +78 -0
- 1x7b/1x7b_ligand.sdf +68 -0
- 1x7b/1x7b_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1x7b/1x7b_protein_processed_fix.pdb +0 -0
- 1xff/1xff_ligand.mol2 +51 -0
- 1xff/1xff_ligand.sdf +45 -0
- 1xff/1xff_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1xff/1xff_protein_processed_fix.pdb +0 -0
- 1y1m/1y1m_ligand.mol2 +56 -0
- 1y1m/1y1m_ligand.sdf +48 -0
- 1y1m/1y1m_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1y1m/1y1m_protein_processed_fix.pdb +0 -0
- 1zp5/1zp5_ligand.mol2 +97 -0
- 1zp5/1zp5_ligand.sdf +87 -0
1ai7/1ai7_ligand.mol2
ADDED
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###
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### Created by X-TOOL on Mon Sep 10 21:12:45 2018
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###
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@<TRIPOS>MOLECULE
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1ai7_ligand
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13 13 1 0 0
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SMALL
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GAST_HUCK
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@<TRIPOS>ATOM
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1 C1 10.0120 35.4330 32.6350 C.ar 1 IPH 0.0876
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2 C2 10.5500 36.4840 31.8960 C.ar 1 IPH -0.0334
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3 C3 11.6400 37.0940 32.4870 C.ar 1 IPH -0.0707
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4 C4 12.1260 36.7140 33.7230 C.ar 1 IPH -0.0729
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5 C5 11.5350 35.6690 34.4060 C.ar 1 IPH -0.0707
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6 C6 10.4420 35.0130 33.9000 C.ar 1 IPH -0.0334
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7 O1 8.9550 34.7450 32.0780 O.3 1 IPH -0.3331
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8 H1 10.1480 36.7967 30.9391 H 1 IPH 0.0542
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9 H2 12.1332 37.9027 31.9599 H 1 IPH 0.0589
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10 H3 12.9712 37.2359 34.1569 H 1 IPH 0.0523
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11 H4 11.9435 35.3610 35.3617 H 1 IPH 0.0589
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12 H5 9.9426 34.2198 34.4446 H 1 IPH 0.0542
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13 H6 8.7517 35.1142 31.2267 H 1 IPH 0.2481
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@<TRIPOS>BOND
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1 1 7 1
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2 1 6 ar
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3 1 2 ar
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4 2 3 ar
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5 3 4 ar
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6 4 5 ar
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7 5 6 ar
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8 2 8 1
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9 3 9 1
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10 4 10 1
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11 5 11 1
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12 6 12 1
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13 7 13 1
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@<TRIPOS>SUBSTRUCTURE
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1 IPH 1
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1ai7/1ai7_ligand.sdf
ADDED
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1ai7_ligand
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-I-interpret-
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13 13 0 0 0 0 0 0 0 0999 V2000
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10.0120 35.4330 32.6350 C 0 0 0 0 0
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10.5500 36.4840 31.8960 C 0 0 0 0 0
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11.6400 37.0940 32.4870 C 0 0 0 0 0
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| 8 |
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12.1260 36.7140 33.7230 C 0 0 0 0 0
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| 9 |
+
11.5350 35.6690 34.4060 C 0 0 0 0 0
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| 10 |
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10.4420 35.0130 33.9000 C 0 0 0 0 0
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| 11 |
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8.9550 34.7450 32.0780 O 0 0 0 0 0
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| 12 |
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10.1458 36.7984 30.9338 H 0 0 0 0 0
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| 13 |
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12.1359 37.9072 31.9570 H 0 0 0 0 0
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| 14 |
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12.9759 37.2388 34.1593 H 0 0 0 0 0
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| 15 |
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11.9458 35.3593 35.3670 H 0 0 0 0 0
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| 16 |
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9.9399 34.2154 34.4476 H 0 0 0 0 0
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| 17 |
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8.7495 35.1182 31.2177 H 0 0 0 0 0
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1 7 1 0 0 0
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| 19 |
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1 6 4 0 0 0
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1 2 4 0 0 0
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| 21 |
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2 3 4 0 0 0
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| 22 |
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3 4 4 0 0 0
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| 23 |
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4 5 4 0 0 0
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5 6 4 0 0 0
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2 8 1 0 0 0
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| 26 |
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3 9 1 0 0 0
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| 27 |
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4 10 1 0 0 0
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| 28 |
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5 11 1 0 0 0
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| 29 |
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6 12 1 0 0 0
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| 30 |
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7 13 1 0 0 0
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M END
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$$$$
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1ai7/1ai7_protein_esmfold_aligned_tr_fix.pdb
ADDED
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The diff for this file is too large to render.
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1ai7/1ai7_protein_processed_fix.pdb
ADDED
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The diff for this file is too large to render.
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1ao0/1ao0_protein_esmfold_aligned_tr_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1ao0/1ao0_protein_processed_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1fd0/1fd0_ligand.mol2
ADDED
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| 1 |
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###
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### Created by X-TOOL on Mon Sep 10 21:12:48 2018
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###
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@<TRIPOS>MOLECULE
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| 6 |
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1fd0_ligand
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56 59 1 0 0
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| 8 |
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SMALL
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| 9 |
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GAST_HUCK
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| 10 |
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| 11 |
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@<TRIPOS>ATOM
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| 13 |
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1 C1 34.5290 18.2070 88.4740 C.2 1 254 0.0625
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| 14 |
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2 C2 35.5050 17.2840 87.8740 C.ar 1 254 0.0104
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| 15 |
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3 C3 35.5970 15.9690 88.4400 C.ar 1 254 -0.0484
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| 16 |
+
4 C4 36.5130 15.0790 87.8920 C.ar 1 254 -0.0524
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| 17 |
+
5 C5 37.3450 15.4230 86.8080 C.ar 1 254 -0.0167
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| 18 |
+
6 C10 37.2450 16.7270 86.2600 C.ar 1 254 -0.0144
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| 19 |
+
7 C11 36.3270 17.6400 86.8010 C.ar 1 254 -0.0395
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| 20 |
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8 C15 42.8340 14.1030 82.0500 C.ar 1 254 -0.0356
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| 21 |
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9 C16 43.2380 13.3710 80.7710 C.3 1 254 -0.0342
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| 22 |
+
10 C17 44.6680 13.7450 80.3470 C.3 1 254 -0.0766
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| 23 |
+
11 C18 44.9870 15.1890 80.4830 C.3 1 254 -0.0840
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| 24 |
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12 C19 44.8750 15.6980 81.9340 C.3 1 254 -0.0497
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| 25 |
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13 C20 43.6020 15.1700 82.5710 C.ar 1 254 -0.0499
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| 26 |
+
14 C23 42.2530 13.7000 79.6710 C.3 1 254 -0.0799
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| 27 |
+
15 C24 43.2180 11.8570 81.0480 C.3 1 254 -0.0799
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| 28 |
+
16 C25 44.7610 17.2230 81.7530 C.3 1 254 -0.0896
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| 29 |
+
17 C26 46.0920 15.3970 82.8230 C.3 1 254 -0.0896
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| 30 |
+
18 O1 33.9460 17.8990 89.4960 O.co2 1 254 -0.5608
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| 31 |
+
19 O2 34.3440 19.3010 87.8490 O.co2 1 254 -0.5608
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| 32 |
+
20 C6 38.2610 14.4850 86.2710 C.ar 1 254 -0.0448
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| 33 |
+
21 C7 39.0980 14.7970 85.2080 C.ar 1 254 0.0069
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| 34 |
+
22 C8 38.9400 16.1130 84.7060 C.ar 1 254 -0.0514
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| 35 |
+
23 C9 38.0800 17.0570 85.1760 C.ar 1 254 -0.0525
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| 36 |
+
24 C13 41.3030 14.3980 83.9430 C.ar 1 254 0.0584
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| 37 |
+
25 C14 41.6950 13.7340 82.7510 C.ar 1 254 -0.0026
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| 38 |
+
26 C21 43.1920 15.8040 83.7470 C.ar 1 254 -0.0232
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| 39 |
+
27 C22 42.0870 15.4270 84.4090 C.ar 1 254 -0.0021
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| 40 |
+
28 C12 40.0980 13.8980 84.5460 C.2 1 254 0.1321
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| 41 |
+
29 N1 39.9290 12.5750 84.4770 N.2 1 254 -0.0982
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| 42 |
+
30 O3 38.8160 12.0060 85.0150 O.3 1 254 -0.2197
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| 43 |
+
31 H1 34.9684 15.6771 89.2735 H 1 254 0.0640
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| 44 |
+
32 H2 36.5903 14.0835 88.3140 H 1 254 0.0623
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| 45 |
+
33 H3 36.2542 18.6364 86.3804 H 1 254 0.0667
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| 46 |
+
34 H4 44.8004 13.4607 79.2927 H 1 254 0.0174
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| 47 |
+
35 H5 45.3726 13.1761 80.9715 H 1 254 0.0174
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| 48 |
+
36 H6 44.2888 15.7626 79.8558 H 1 254 0.0144
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| 49 |
+
37 H7 46.0162 15.3549 80.1321 H 1 254 0.0144
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| 50 |
+
38 H8 41.2379 13.4254 79.9937 H 1 254 0.0147
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| 51 |
+
39 H9 42.5146 13.1357 78.7637 H 1 254 0.0147
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| 52 |
+
40 H10 42.2902 14.7781 79.4558 H 1 254 0.0147
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| 53 |
+
41 H11 42.2062 11.5538 81.3549 H 1 254 0.0147
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| 54 |
+
42 H12 43.9309 11.6219 81.8520 H 1 254 0.0147
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| 55 |
+
43 H13 43.5025 11.3134 80.1350 H 1 254 0.0147
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| 56 |
+
44 H14 44.6741 17.7037 82.7386 H 1 254 0.0115
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| 57 |
+
45 H15 43.8696 17.4553 81.1519 H 1 254 0.0115
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| 58 |
+
46 H16 45.6579 17.5994 81.2394 H 1 254 0.0115
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| 59 |
+
47 H17 46.1855 14.3097 82.9607 H 1 254 0.0115
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| 60 |
+
48 H18 45.9595 15.8805 83.8021 H 1 254 0.0115
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| 61 |
+
49 H19 47.0021 15.7852 82.3425 H 1 254 0.0115
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| 62 |
+
50 H20 38.3099 13.4923 86.7037 H 1 254 0.0621
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| 63 |
+
51 H21 39.5648 16.3948 83.8662 H 1 254 0.0623
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| 64 |
+
52 H22 38.0389 18.0420 84.7253 H 1 254 0.0630
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| 65 |
+
53 H23 41.0881 12.9167 82.3785 H 1 254 0.1024
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| 66 |
+
54 H24 43.7840 16.6246 84.1360 H 1 254 0.0928
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| 67 |
+
55 H25 41.8091 15.9402 85.3225 H 1 254 0.0873
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| 68 |
+
56 H26 38.0437 12.3608 84.5907 H 1 254 0.3026
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| 69 |
+
@<TRIPOS>BOND
|
| 70 |
+
1 1 19 ar
|
| 71 |
+
2 1 18 ar
|
| 72 |
+
3 1 2 1
|
| 73 |
+
4 2 7 ar
|
| 74 |
+
5 2 3 ar
|
| 75 |
+
6 3 4 ar
|
| 76 |
+
7 4 5 ar
|
| 77 |
+
8 5 20 ar
|
| 78 |
+
9 5 6 ar
|
| 79 |
+
10 6 23 ar
|
| 80 |
+
11 6 7 ar
|
| 81 |
+
12 23 22 ar
|
| 82 |
+
13 22 21 ar
|
| 83 |
+
14 21 28 1
|
| 84 |
+
15 21 20 ar
|
| 85 |
+
16 28 29 2
|
| 86 |
+
17 28 24 1
|
| 87 |
+
18 24 27 ar
|
| 88 |
+
19 24 25 ar
|
| 89 |
+
20 25 8 ar
|
| 90 |
+
21 8 13 ar
|
| 91 |
+
22 8 9 1
|
| 92 |
+
23 9 15 1
|
| 93 |
+
24 9 14 1
|
| 94 |
+
25 9 10 1
|
| 95 |
+
26 10 11 1
|
| 96 |
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27 11 12 1
|
| 97 |
+
28 12 17 1
|
| 98 |
+
29 12 16 1
|
| 99 |
+
30 12 13 1
|
| 100 |
+
31 13 26 ar
|
| 101 |
+
32 26 27 ar
|
| 102 |
+
33 29 30 1
|
| 103 |
+
34 3 31 1
|
| 104 |
+
35 4 32 1
|
| 105 |
+
36 7 33 1
|
| 106 |
+
37 10 34 1
|
| 107 |
+
38 10 35 1
|
| 108 |
+
39 11 36 1
|
| 109 |
+
40 11 37 1
|
| 110 |
+
41 14 38 1
|
| 111 |
+
42 14 39 1
|
| 112 |
+
43 14 40 1
|
| 113 |
+
44 15 41 1
|
| 114 |
+
45 15 42 1
|
| 115 |
+
46 15 43 1
|
| 116 |
+
47 16 44 1
|
| 117 |
+
48 16 45 1
|
| 118 |
+
49 16 46 1
|
| 119 |
+
50 17 47 1
|
| 120 |
+
51 17 48 1
|
| 121 |
+
52 17 49 1
|
| 122 |
+
53 20 50 1
|
| 123 |
+
54 22 51 1
|
| 124 |
+
55 23 52 1
|
| 125 |
+
56 25 53 1
|
| 126 |
+
57 26 54 1
|
| 127 |
+
58 27 55 1
|
| 128 |
+
59 30 56 1
|
| 129 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 130 |
+
1 254 1
|
| 131 |
+
|
1fd0/1fd0_ligand.sdf
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1fd0_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
57 60 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
34.5290 18.2070 88.4740 C 0 0 0 0 0
|
| 6 |
+
35.5050 17.2840 87.8740 C 0 0 0 0 0
|
| 7 |
+
35.5970 15.9690 88.4400 C 0 0 0 0 0
|
| 8 |
+
36.5130 15.0790 87.8920 C 0 0 0 0 0
|
| 9 |
+
37.3450 15.4230 86.8080 C 0 0 0 0 0
|
| 10 |
+
37.2450 16.7270 86.2600 C 0 0 0 0 0
|
| 11 |
+
36.3270 17.6400 86.8010 C 0 0 0 0 0
|
| 12 |
+
42.8340 14.1030 82.0500 C 0 0 0 0 0
|
| 13 |
+
43.2380 13.3710 80.7710 C 0 0 0 0 0
|
| 14 |
+
44.6680 13.7450 80.3470 C 0 0 0 0 0
|
| 15 |
+
44.9870 15.1890 80.4830 C 0 0 0 0 0
|
| 16 |
+
44.8750 15.6980 81.9340 C 0 0 0 0 0
|
| 17 |
+
43.6020 15.1700 82.5710 C 0 0 0 0 0
|
| 18 |
+
42.2530 13.7000 79.6710 C 0 0 0 0 0
|
| 19 |
+
43.2180 11.8570 81.0480 C 0 0 0 0 0
|
| 20 |
+
44.7610 17.2230 81.7530 C 0 0 0 0 0
|
| 21 |
+
46.0920 15.3970 82.8230 C 0 0 0 0 0
|
| 22 |
+
33.9460 17.8990 89.4960 O 0 0 0 0 0
|
| 23 |
+
34.3440 19.3010 87.8490 O 0 0 0 0 0
|
| 24 |
+
38.2610 14.4850 86.2710 C 0 0 0 0 0
|
| 25 |
+
39.0980 14.7970 85.2080 C 0 0 0 0 0
|
| 26 |
+
38.9400 16.1130 84.7060 C 0 0 0 0 0
|
| 27 |
+
38.0800 17.0570 85.1760 C 0 0 0 0 0
|
| 28 |
+
41.3030 14.3980 83.9430 C 0 0 0 0 0
|
| 29 |
+
41.6950 13.7340 82.7510 C 0 0 0 0 0
|
| 30 |
+
43.1920 15.8040 83.7470 C 0 0 0 0 0
|
| 31 |
+
42.0870 15.4270 84.4090 C 0 0 0 0 0
|
| 32 |
+
40.0980 13.8980 84.5460 C 0 0 0 0 0
|
| 33 |
+
39.9290 12.5750 84.4770 N 0 0 0 0 0
|
| 34 |
+
38.8160 12.0060 85.0150 O 0 0 0 0 0
|
| 35 |
+
34.9649 15.6755 89.2781 H 0 0 0 0 0
|
| 36 |
+
36.5907 14.0780 88.3163 H 0 0 0 0 0
|
| 37 |
+
36.2538 18.6420 86.3781 H 0 0 0 0 0
|
| 38 |
+
44.7661 13.4926 79.2912 H 0 0 0 0 0
|
| 39 |
+
45.3494 13.2026 81.0025 H 0 0 0 0 0
|
| 40 |
+
44.2693 15.7453 79.8801 H 0 0 0 0 0
|
| 41 |
+
46.0180 15.3327 80.1599 H 0 0 0 0 0
|
| 42 |
+
41.2545 13.3832 79.9724 H 0 0 0 0 0
|
| 43 |
+
42.2559 14.7752 79.4921 H 0 0 0 0 0
|
| 44 |
+
42.5413 13.1778 78.7587 H 0 0 0 0 0
|
| 45 |
+
43.9216 11.6259 81.8478 H 0 0 0 0 0
|
| 46 |
+
42.2139 11.5570 81.3478 H 0 0 0 0 0
|
| 47 |
+
43.5044 11.3197 80.1439 H 0 0 0 0 0
|
| 48 |
+
45.6503 17.5947 81.2439 H 0 0 0 0 0
|
| 49 |
+
43.8774 17.4518 81.1572 H 0 0 0 0 0
|
| 50 |
+
44.6749 17.6981 82.7302 H 0 0 0 0 0
|
| 51 |
+
46.2409 14.3187 82.8800 H 0 0 0 0 0
|
| 52 |
+
46.9781 15.8652 82.3944 H 0 0 0 0 0
|
| 53 |
+
45.9171 15.7943 83.8228 H 0 0 0 0 0
|
| 54 |
+
34.9107 19.3255 87.0745 H 0 0 0 0 0
|
| 55 |
+
38.3102 13.4868 86.7061 H 0 0 0 0 0
|
| 56 |
+
39.5683 16.3964 83.8616 H 0 0 0 0 0
|
| 57 |
+
38.0386 18.0474 84.7228 H 0 0 0 0 0
|
| 58 |
+
41.0847 12.9122 82.3765 H 0 0 0 0 0
|
| 59 |
+
43.7872 16.6291 84.1382 H 0 0 0 0 0
|
| 60 |
+
41.8076 15.9430 85.3276 H 0 0 0 0 0
|
| 61 |
+
38.8476 11.0558 84.8820 H 0 0 0 0 0
|
| 62 |
+
1 19 1 0 0 0
|
| 63 |
+
1 18 2 0 0 0
|
| 64 |
+
1 2 1 0 0 0
|
| 65 |
+
2 7 4 0 0 0
|
| 66 |
+
2 3 4 0 0 0
|
| 67 |
+
3 4 4 0 0 0
|
| 68 |
+
4 5 4 0 0 0
|
| 69 |
+
5 20 4 0 0 0
|
| 70 |
+
5 6 4 0 0 0
|
| 71 |
+
6 23 4 0 0 0
|
| 72 |
+
6 7 4 0 0 0
|
| 73 |
+
23 22 4 0 0 0
|
| 74 |
+
22 21 4 0 0 0
|
| 75 |
+
21 28 1 0 0 0
|
| 76 |
+
21 20 4 0 0 0
|
| 77 |
+
28 29 2 0 0 0
|
| 78 |
+
28 24 1 0 0 0
|
| 79 |
+
24 27 4 0 0 0
|
| 80 |
+
24 25 4 0 0 0
|
| 81 |
+
25 8 4 0 0 0
|
| 82 |
+
8 13 4 0 0 0
|
| 83 |
+
8 9 1 0 0 0
|
| 84 |
+
9 15 1 0 0 0
|
| 85 |
+
9 14 1 0 0 0
|
| 86 |
+
9 10 1 0 0 0
|
| 87 |
+
10 11 1 0 0 0
|
| 88 |
+
11 12 1 0 0 0
|
| 89 |
+
12 17 1 0 0 0
|
| 90 |
+
12 16 1 0 0 0
|
| 91 |
+
12 13 1 0 0 0
|
| 92 |
+
13 26 4 0 0 0
|
| 93 |
+
26 27 4 0 0 0
|
| 94 |
+
29 30 1 0 0 0
|
| 95 |
+
3 31 1 0 0 0
|
| 96 |
+
4 32 1 0 0 0
|
| 97 |
+
7 33 1 0 0 0
|
| 98 |
+
10 34 1 0 0 0
|
| 99 |
+
10 35 1 0 0 0
|
| 100 |
+
11 36 1 0 0 0
|
| 101 |
+
11 37 1 0 0 0
|
| 102 |
+
14 38 1 0 0 0
|
| 103 |
+
14 39 1 0 0 0
|
| 104 |
+
14 40 1 0 0 0
|
| 105 |
+
15 41 1 0 0 0
|
| 106 |
+
15 42 1 0 0 0
|
| 107 |
+
15 43 1 0 0 0
|
| 108 |
+
16 44 1 0 0 0
|
| 109 |
+
16 45 1 0 0 0
|
| 110 |
+
16 46 1 0 0 0
|
| 111 |
+
17 47 1 0 0 0
|
| 112 |
+
17 48 1 0 0 0
|
| 113 |
+
17 49 1 0 0 0
|
| 114 |
+
19 50 1 0 0 0
|
| 115 |
+
20 51 1 0 0 0
|
| 116 |
+
22 52 1 0 0 0
|
| 117 |
+
23 53 1 0 0 0
|
| 118 |
+
25 54 1 0 0 0
|
| 119 |
+
26 55 1 0 0 0
|
| 120 |
+
27 56 1 0 0 0
|
| 121 |
+
30 57 1 0 0 0
|
| 122 |
+
M END
|
| 123 |
+
$$$$
|
1fd0/1fd0_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1fd0/1fd0_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gj8/1gj8_ligand.mol2
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1gj8_ligand
|
| 7 |
+
45 47 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 8.7020 1.9060 24.7210 C.ar 1 133 0.0466
|
| 14 |
+
2 C2 9.5020 1.7010 23.5460 C.ar 1 133 0.1219
|
| 15 |
+
3 C3 10.0890 2.7460 22.8090 C.ar 1 133 -0.0294
|
| 16 |
+
4 C4 9.8940 3.9850 23.3270 C.ar 1 133 0.0272
|
| 17 |
+
5 C5 9.1430 4.2220 24.4360 C.ar 1 133 0.0772
|
| 18 |
+
6 C6 8.5610 3.2360 25.1760 C.ar 1 133 -0.0355
|
| 19 |
+
7 C7 8.0960 0.8660 25.4440 C.cat 1 133 0.2308
|
| 20 |
+
8 N1 7.6220 1.1290 26.6300 N.pl3 1 133 -0.2733
|
| 21 |
+
9 N2 7.9690 -0.3410 24.9550 N.pl3 1 133 -0.2733
|
| 22 |
+
10 N3 10.2800 5.1330 22.9050 N.2 1 133 -0.3125
|
| 23 |
+
11 N4 9.0730 5.4870 24.7590 N.pl3 1 133 -0.2531
|
| 24 |
+
12 C8 9.7890 5.9750 23.7630 C.2 1 133 0.1325
|
| 25 |
+
13 C1' 10.0240 7.3300 23.6610 C.ar 1 133 0.0567
|
| 26 |
+
14 C2' 9.6070 8.1950 24.6730 C.ar 1 133 -0.0628
|
| 27 |
+
15 C3' 9.8420 9.5420 24.5870 C.ar 1 133 -0.0761
|
| 28 |
+
16 C4' 10.4300 10.0580 23.4430 C.ar 1 133 -0.0368
|
| 29 |
+
17 C5' 10.8560 9.2200 22.4070 C.ar 1 133 0.1262
|
| 30 |
+
18 C6' 10.6190 7.8690 22.5090 C.ar 1 133 0.1381
|
| 31 |
+
19 O6' 11.0360 7.0530 21.4740 O.3 1 133 -0.3301
|
| 32 |
+
20 O5' 11.4570 9.7000 21.2550 O.3 1 133 -0.3204
|
| 33 |
+
21 C10 12.2690 10.8580 21.4780 C.3 1 133 0.0702
|
| 34 |
+
22 C20 12.8550 11.3540 20.1570 C.3 1 133 -0.0193
|
| 35 |
+
23 C30 14.1520 10.6070 19.8240 C.3 1 133 -0.0602
|
| 36 |
+
24 C40 11.8260 11.2150 19.0470 C.3 1 133 -0.0602
|
| 37 |
+
25 F2 9.7230 0.4740 23.0740 F 1 133 -0.1932
|
| 38 |
+
26 H1 10.6526 2.5748 21.8990 H 1 133 0.0526
|
| 39 |
+
27 H2 8.0098 3.4643 26.0811 H 1 133 0.0538
|
| 40 |
+
28 H3 7.1725 0.3844 27.1817 H 1 133 0.3180
|
| 41 |
+
29 H4 7.6971 2.0814 27.0151 H 1 133 0.3180
|
| 42 |
+
30 H5 8.3399 -0.5592 24.0192 H 1 133 0.3180
|
| 43 |
+
31 H6 7.4981 -1.0729 25.5059 H 1 133 0.3180
|
| 44 |
+
32 H7 8.6044 5.9572 25.5466 H 1 133 0.2288
|
| 45 |
+
33 H8 9.0904 7.7962 25.5385 H 1 133 0.0540
|
| 46 |
+
34 H9 9.5706 10.1981 25.4061 H 1 133 0.0511
|
| 47 |
+
35 H10 10.5621 11.1298 23.3493 H 1 133 0.0544
|
| 48 |
+
36 H11 10.8112 6.1516 21.6726 H 1 133 0.2481
|
| 49 |
+
37 H12 13.0885 10.6003 22.1650 H 1 133 0.0611
|
| 50 |
+
38 H13 11.6533 11.6532 21.9236 H 1 133 0.0611
|
| 51 |
+
39 H14 13.0973 12.4214 20.2663 H 1 133 0.0321
|
| 52 |
+
40 H15 14.5553 10.9796 18.8709 H 1 133 0.0233
|
| 53 |
+
41 H16 13.9434 9.5304 19.7379 H 1 133 0.0233
|
| 54 |
+
42 H17 14.8878 10.7751 20.6242 H 1 133 0.0233
|
| 55 |
+
43 H18 10.9129 11.7629 19.3228 H 1 133 0.0233
|
| 56 |
+
44 H19 11.5855 10.1516 18.9010 H 1 133 0.0233
|
| 57 |
+
45 H20 12.2348 11.6299 18.1139 H 1 133 0.0233
|
| 58 |
+
@<TRIPOS>BOND
|
| 59 |
+
1 2 25 1
|
| 60 |
+
2 1 7 1
|
| 61 |
+
3 1 6 ar
|
| 62 |
+
4 1 2 ar
|
| 63 |
+
5 2 3 ar
|
| 64 |
+
6 3 4 ar
|
| 65 |
+
7 4 10 1
|
| 66 |
+
8 4 5 ar
|
| 67 |
+
9 5 11 1
|
| 68 |
+
10 6 5 ar
|
| 69 |
+
11 11 12 1
|
| 70 |
+
12 12 13 1
|
| 71 |
+
13 10 12 2
|
| 72 |
+
14 13 18 ar
|
| 73 |
+
15 13 14 ar
|
| 74 |
+
16 14 15 ar
|
| 75 |
+
17 15 16 ar
|
| 76 |
+
18 16 17 ar
|
| 77 |
+
19 17 20 1
|
| 78 |
+
20 18 17 ar
|
| 79 |
+
21 18 19 1
|
| 80 |
+
22 20 21 1
|
| 81 |
+
23 21 22 1
|
| 82 |
+
24 22 24 1
|
| 83 |
+
25 22 23 1
|
| 84 |
+
26 7 9 ar
|
| 85 |
+
27 7 8 ar
|
| 86 |
+
28 3 26 1
|
| 87 |
+
29 6 27 1
|
| 88 |
+
30 8 28 1
|
| 89 |
+
31 8 29 1
|
| 90 |
+
32 9 30 1
|
| 91 |
+
33 9 31 1
|
| 92 |
+
34 11 32 1
|
| 93 |
+
35 14 33 1
|
| 94 |
+
36 15 34 1
|
| 95 |
+
37 16 35 1
|
| 96 |
+
38 19 36 1
|
| 97 |
+
39 21 37 1
|
| 98 |
+
40 21 38 1
|
| 99 |
+
41 22 39 1
|
| 100 |
+
42 23 40 1
|
| 101 |
+
43 23 41 1
|
| 102 |
+
44 23 42 1
|
| 103 |
+
45 24 43 1
|
| 104 |
+
46 24 44 1
|
| 105 |
+
47 24 45 1
|
| 106 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 107 |
+
1 133 1
|
| 108 |
+
|
1gj8/1gj8_ligand.sdf
ADDED
|
@@ -0,0 +1,94 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1gj8_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
43 45 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
8.7020 1.9060 24.7210 C 0 0 0 0 0
|
| 6 |
+
9.5020 1.7010 23.5460 C 0 0 0 0 0
|
| 7 |
+
10.0890 2.7460 22.8090 C 0 0 0 0 0
|
| 8 |
+
9.8940 3.9850 23.3270 C 0 0 0 0 0
|
| 9 |
+
9.1430 4.2220 24.4360 C 0 0 0 0 0
|
| 10 |
+
8.5610 3.2360 25.1760 C 0 0 0 0 0
|
| 11 |
+
8.0960 0.8660 25.4440 C 0 0 0 0 0
|
| 12 |
+
7.6220 1.1290 26.6300 N 0 0 0 0 0
|
| 13 |
+
7.9690 -0.3410 24.9550 N 0 0 0 0 0
|
| 14 |
+
10.2800 5.1330 22.9050 N 0 0 0 0 0
|
| 15 |
+
9.0730 5.4870 24.7590 N 0 0 0 0 0
|
| 16 |
+
9.7890 5.9750 23.7630 C 0 0 0 0 0
|
| 17 |
+
10.0240 7.3300 23.6610 C 0 0 0 0 0
|
| 18 |
+
9.6070 8.1950 24.6730 C 0 0 0 0 0
|
| 19 |
+
9.8420 9.5420 24.5870 C 0 0 0 0 0
|
| 20 |
+
10.4300 10.0580 23.4430 C 0 0 0 0 0
|
| 21 |
+
10.8560 9.2200 22.4070 C 0 0 0 0 0
|
| 22 |
+
10.6190 7.8690 22.5090 C 0 0 0 0 0
|
| 23 |
+
11.0360 7.0530 21.4740 O 0 0 0 0 0
|
| 24 |
+
11.4570 9.7000 21.2550 O 0 0 0 0 0
|
| 25 |
+
12.2690 10.8580 21.4780 C 0 0 0 0 0
|
| 26 |
+
12.8550 11.3540 20.1570 C 0 0 0 0 0
|
| 27 |
+
14.1520 10.6070 19.8240 C 0 0 0 0 0
|
| 28 |
+
11.8260 11.2150 19.0470 C 0 0 0 0 0
|
| 29 |
+
9.7230 0.4740 23.0740 F 0 0 0 0 0
|
| 30 |
+
10.6558 2.5739 21.8940 H 0 0 0 0 0
|
| 31 |
+
8.0068 3.4656 26.0861 H 0 0 0 0 0
|
| 32 |
+
7.1574 0.3970 27.1674 H 0 0 0 0 0
|
| 33 |
+
7.5027 -1.0658 25.5005 H 0 0 0 0 0
|
| 34 |
+
8.3363 -0.5571 24.0283 H 0 0 0 0 0
|
| 35 |
+
9.0875 7.7940 25.5433 H 0 0 0 0 0
|
| 36 |
+
9.5691 10.2017 25.4107 H 0 0 0 0 0
|
| 37 |
+
10.5629 11.1358 23.3488 H 0 0 0 0 0
|
| 38 |
+
11.4156 7.5920 20.7761 H 0 0 0 0 0
|
| 39 |
+
13.0834 10.5979 22.1542 H 0 0 0 0 0
|
| 40 |
+
11.6548 11.6459 21.9140 H 0 0 0 0 0
|
| 41 |
+
13.1060 12.4103 20.2539 H 0 0 0 0 0
|
| 42 |
+
14.8802 10.7743 20.6176 H 0 0 0 0 0
|
| 43 |
+
13.9439 9.5404 19.7390 H 0 0 0 0 0
|
| 44 |
+
14.5507 10.9771 18.8794 H 0 0 0 0 0
|
| 45 |
+
11.5439 10.1672 18.9439 H 0 0 0 0 0
|
| 46 |
+
10.9448 11.8072 19.2939 H 0 0 0 0 0
|
| 47 |
+
12.2539 11.5713 18.1099 H 0 0 0 0 0
|
| 48 |
+
2 25 1 0 0 0
|
| 49 |
+
1 7 1 0 0 0
|
| 50 |
+
1 6 4 0 0 0
|
| 51 |
+
1 2 4 0 0 0
|
| 52 |
+
2 3 4 0 0 0
|
| 53 |
+
3 4 4 0 0 0
|
| 54 |
+
4 10 4 0 0 0
|
| 55 |
+
4 5 4 0 0 0
|
| 56 |
+
5 11 4 0 0 0
|
| 57 |
+
6 5 4 0 0 0
|
| 58 |
+
11 12 4 0 0 0
|
| 59 |
+
12 13 1 0 0 0
|
| 60 |
+
10 12 4 0 0 0
|
| 61 |
+
13 18 4 0 0 0
|
| 62 |
+
13 14 4 0 0 0
|
| 63 |
+
14 15 4 0 0 0
|
| 64 |
+
15 16 4 0 0 0
|
| 65 |
+
16 17 4 0 0 0
|
| 66 |
+
17 20 1 0 0 0
|
| 67 |
+
18 17 4 0 0 0
|
| 68 |
+
18 19 1 0 0 0
|
| 69 |
+
20 21 1 0 0 0
|
| 70 |
+
21 22 1 0 0 0
|
| 71 |
+
22 24 1 0 0 0
|
| 72 |
+
22 23 1 0 0 0
|
| 73 |
+
7 9 1 0 0 0
|
| 74 |
+
7 8 2 0 0 0
|
| 75 |
+
3 26 1 0 0 0
|
| 76 |
+
6 27 1 0 0 0
|
| 77 |
+
8 28 1 0 0 0
|
| 78 |
+
9 29 1 0 0 0
|
| 79 |
+
9 30 1 0 0 0
|
| 80 |
+
14 31 1 0 0 0
|
| 81 |
+
15 32 1 0 0 0
|
| 82 |
+
16 33 1 0 0 0
|
| 83 |
+
19 34 1 0 0 0
|
| 84 |
+
21 35 1 0 0 0
|
| 85 |
+
21 36 1 0 0 0
|
| 86 |
+
22 37 1 0 0 0
|
| 87 |
+
23 38 1 0 0 0
|
| 88 |
+
23 39 1 0 0 0
|
| 89 |
+
23 40 1 0 0 0
|
| 90 |
+
24 41 1 0 0 0
|
| 91 |
+
24 42 1 0 0 0
|
| 92 |
+
24 43 1 0 0 0
|
| 93 |
+
M END
|
| 94 |
+
$$$$
|
1gj8/1gj8_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gj8/1gj8_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i32/1i32_ligand.mol2
ADDED
|
@@ -0,0 +1,165 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1i32_ligand
|
| 7 |
+
72 77 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C5 22.8230 79.7350 -1.1320 C.3 1 NMD 0.0730
|
| 14 |
+
2 C4 23.9020 79.9230 -2.2110 C.3 1 NMD 0.1133
|
| 15 |
+
3 O4 23.4310 80.6340 -3.3530 O.3 1 NMD -0.3371
|
| 16 |
+
4 C3 25.1290 80.6880 -1.7370 C.3 1 NMD 0.1115
|
| 17 |
+
5 O3 26.3130 80.2440 -2.3960 O.3 1 NMD -0.3867
|
| 18 |
+
6 C2 24.7380 82.1400 -2.0340 C.3 1 NMD 0.1249
|
| 19 |
+
7 N2 25.8600 83.0550 -2.2250 N.am 1 NMD -0.2753
|
| 20 |
+
8 C1 23.8610 81.9980 -3.2910 C.3 1 NMD 0.1979
|
| 21 |
+
9 N9A 22.7130 82.9000 -3.3940 N.pl3 1 NMD -0.1922
|
| 22 |
+
10 C8A 22.0580 83.5870 -2.4020 C.2 1 NMD 0.1123
|
| 23 |
+
11 N7A 21.0540 84.3220 -2.8270 N.2 1 NMD -0.2957
|
| 24 |
+
12 C5A 21.0360 84.1100 -4.1980 C.ar 1 NMD 0.1048
|
| 25 |
+
13 C6A 20.2070 84.5980 -5.2650 C.ar 1 NMD 0.1344
|
| 26 |
+
14 N6A 19.1690 85.4560 -5.1340 N.pl3 1 NMD -0.2890
|
| 27 |
+
15 N1A 20.4860 84.1630 -6.5290 N.ar 1 NMD -0.2695
|
| 28 |
+
16 C2A 21.5070 83.3100 -6.7350 C.ar 1 NMD 0.0533
|
| 29 |
+
17 N3A 22.3420 82.7950 -5.8200 N.ar 1 NMD -0.2714
|
| 30 |
+
18 C4A 22.0560 83.2320 -4.5660 C.ar 1 NMD 0.1613
|
| 31 |
+
19 C11 18.6670 86.0570 -3.8940 C.3 1 NMD 0.0656
|
| 32 |
+
20 C1 19.0620 87.5020 -3.6200 C.ar 1 NMD -0.0099
|
| 33 |
+
21 C9 18.7150 88.1450 -2.3740 C.ar 1 NMD -0.0102
|
| 34 |
+
22 C8 17.9880 87.4810 -1.3330 C.ar 1 NMD -0.0547
|
| 35 |
+
23 C7 17.6640 88.1460 -0.1160 C.ar 1 NMD -0.0625
|
| 36 |
+
24 C6 18.0640 89.4950 0.0870 C.ar 1 NMD -0.0629
|
| 37 |
+
25 C2 19.7870 88.2350 -4.6090 C.ar 1 NMD -0.0588
|
| 38 |
+
26 C10 19.1190 89.5240 -2.1550 C.ar 1 NMD -0.0242
|
| 39 |
+
27 C5 18.7880 90.1780 -0.9310 C.ar 1 NMD -0.0569
|
| 40 |
+
28 C3 20.1760 89.5830 -4.3880 C.ar 1 NMD -0.0706
|
| 41 |
+
29 C4 19.8420 90.2220 -3.1640 C.ar 1 NMD -0.0631
|
| 42 |
+
30 C7B 26.1750 84.1240 -1.4490 C.2 1 NMD 0.2005
|
| 43 |
+
31 O7B 25.5440 84.3930 -0.4180 O.2 1 NMD -0.3847
|
| 44 |
+
32 C6B 27.3140 84.9820 -1.8820 C.ar 1 NMD 0.0328
|
| 45 |
+
33 C5B 28.0180 84.6410 -3.0730 C.ar 1 NMD -0.0246
|
| 46 |
+
34 C4B 29.1100 85.4270 -3.5320 C.ar 1 NMD 0.0875
|
| 47 |
+
35 O2M 29.7380 85.0340 -4.6900 O.3 1 NMD -0.3230
|
| 48 |
+
36 C2M 30.9480 84.2800 -4.5840 C.3 1 NMD 0.0592
|
| 49 |
+
37 C3B 29.4950 86.5760 -2.7770 C.ar 1 NMD -0.0011
|
| 50 |
+
38 C1B 27.7080 86.1340 -1.1320 C.ar 1 NMD -0.0246
|
| 51 |
+
39 C2B 28.8020 86.9440 -1.5730 C.ar 1 NMD 0.0875
|
| 52 |
+
40 O1M 29.1390 88.0440 -0.8080 O.3 1 NMD -0.3230
|
| 53 |
+
41 C1M 29.4950 89.2710 -1.4590 C.3 1 NMD 0.0592
|
| 54 |
+
42 O5 23.3320 78.9520 -0.0530 O.3 1 NMD -0.3924
|
| 55 |
+
43 H1 21.9543 79.2240 -1.5728 H 1 NMD 0.0584
|
| 56 |
+
44 H2 22.5149 80.7200 -0.7516 H 1 NMD 0.0584
|
| 57 |
+
45 H3 24.2187 78.9182 -2.5273 H 1 NMD 0.0647
|
| 58 |
+
46 H4 25.2716 80.5538 -0.6546 H 1 NMD 0.0645
|
| 59 |
+
47 H5 27.0570 80.7412 -2.0771 H 1 NMD 0.2100
|
| 60 |
+
48 H6 24.1344 82.5315 -1.2019 H 1 NMD 0.0638
|
| 61 |
+
49 H7 26.4572 82.8762 -3.0069 H 1 NMD 0.1851
|
| 62 |
+
50 H8 24.5018 82.2026 -4.1613 H 1 NMD 0.0993
|
| 63 |
+
51 H9 22.3453 83.5282 -1.3532 H 1 NMD 0.1349
|
| 64 |
+
52 H10 18.6771 85.7157 -6.0009 H 1 NMD 0.1885
|
| 65 |
+
53 H11 21.6741 83.0032 -7.7612 H 1 NMD 0.0996
|
| 66 |
+
54 H12 19.0356 85.4471 -3.0560 H 1 NMD 0.0702
|
| 67 |
+
55 H13 17.5683 86.0128 -3.9242 H 1 NMD 0.0702
|
| 68 |
+
56 H14 17.6784 86.4518 -1.4746 H 1 NMD 0.0628
|
| 69 |
+
57 H15 17.1118 87.6230 0.6564 H 1 NMD 0.0601
|
| 70 |
+
58 H16 17.8187 90.0017 1.0134 H 1 NMD 0.0616
|
| 71 |
+
59 H17 20.0450 87.7535 -5.5453 H 1 NMD 0.0530
|
| 72 |
+
60 H18 19.0913 91.2069 -0.7743 H 1 NMD 0.0609
|
| 73 |
+
61 H19 20.7259 90.1224 -5.1507 H 1 NMD 0.0595
|
| 74 |
+
62 H20 20.1403 91.2506 -2.9965 H 1 NMD 0.0542
|
| 75 |
+
63 H21 27.7157 83.7672 -3.6388 H 1 NMD 0.0501
|
| 76 |
+
64 H22 31.3229 84.0449 -5.5911 H 1 NMD 0.0577
|
| 77 |
+
65 H23 30.7510 83.3452 -4.0387 H 1 NMD 0.0577
|
| 78 |
+
66 H24 31.7011 84.8697 -4.0408 H 1 NMD 0.0577
|
| 79 |
+
67 H25 30.3260 87.1825 -3.1185 H 1 NMD 0.0498
|
| 80 |
+
68 H26 27.1752 86.3950 -0.2248 H 1 NMD 0.0501
|
| 81 |
+
69 H27 29.7314 90.0328 -0.7015 H 1 NMD 0.0577
|
| 82 |
+
70 H28 28.6525 89.6166 -2.0760 H 1 NMD 0.0577
|
| 83 |
+
71 H29 30.3742 89.1050 -2.0988 H 1 NMD 0.0577
|
| 84 |
+
72 H30 22.6555 78.8442 0.6052 H 1 NMD 0.2095
|
| 85 |
+
@<TRIPOS>BOND
|
| 86 |
+
1 1 2 1
|
| 87 |
+
2 1 42 1
|
| 88 |
+
3 2 3 1
|
| 89 |
+
4 2 4 1
|
| 90 |
+
5 3 8 1
|
| 91 |
+
6 4 5 1
|
| 92 |
+
7 4 6 1
|
| 93 |
+
8 6 7 1
|
| 94 |
+
9 6 8 1
|
| 95 |
+
10 7 30 am
|
| 96 |
+
11 8 9 1
|
| 97 |
+
12 9 10 1
|
| 98 |
+
13 9 18 1
|
| 99 |
+
14 10 11 2
|
| 100 |
+
15 11 12 1
|
| 101 |
+
16 12 13 ar
|
| 102 |
+
17 12 18 ar
|
| 103 |
+
18 13 14 1
|
| 104 |
+
19 13 15 ar
|
| 105 |
+
20 14 19 1
|
| 106 |
+
21 15 16 ar
|
| 107 |
+
22 16 17 ar
|
| 108 |
+
23 17 18 ar
|
| 109 |
+
24 19 20 1
|
| 110 |
+
25 20 21 ar
|
| 111 |
+
26 20 25 ar
|
| 112 |
+
27 21 22 ar
|
| 113 |
+
28 21 26 ar
|
| 114 |
+
29 22 23 ar
|
| 115 |
+
30 23 24 ar
|
| 116 |
+
31 24 27 ar
|
| 117 |
+
32 25 28 ar
|
| 118 |
+
33 26 27 ar
|
| 119 |
+
34 26 29 ar
|
| 120 |
+
35 28 29 ar
|
| 121 |
+
36 30 31 2
|
| 122 |
+
37 30 32 1
|
| 123 |
+
38 32 33 ar
|
| 124 |
+
39 32 38 ar
|
| 125 |
+
40 33 34 ar
|
| 126 |
+
41 34 35 1
|
| 127 |
+
42 34 37 ar
|
| 128 |
+
43 35 36 1
|
| 129 |
+
44 37 39 ar
|
| 130 |
+
45 38 39 ar
|
| 131 |
+
46 39 40 1
|
| 132 |
+
47 40 41 1
|
| 133 |
+
48 1 43 1
|
| 134 |
+
49 1 44 1
|
| 135 |
+
50 2 45 1
|
| 136 |
+
51 4 46 1
|
| 137 |
+
52 5 47 1
|
| 138 |
+
53 6 48 1
|
| 139 |
+
54 7 49 1
|
| 140 |
+
55 8 50 1
|
| 141 |
+
56 10 51 1
|
| 142 |
+
57 14 52 1
|
| 143 |
+
58 16 53 1
|
| 144 |
+
59 19 54 1
|
| 145 |
+
60 19 55 1
|
| 146 |
+
61 22 56 1
|
| 147 |
+
62 23 57 1
|
| 148 |
+
63 24 58 1
|
| 149 |
+
64 25 59 1
|
| 150 |
+
65 27 60 1
|
| 151 |
+
66 28 61 1
|
| 152 |
+
67 29 62 1
|
| 153 |
+
68 33 63 1
|
| 154 |
+
69 36 64 1
|
| 155 |
+
70 36 65 1
|
| 156 |
+
71 36 66 1
|
| 157 |
+
72 37 67 1
|
| 158 |
+
73 38 68 1
|
| 159 |
+
74 41 69 1
|
| 160 |
+
75 41 70 1
|
| 161 |
+
76 41 71 1
|
| 162 |
+
77 42 72 1
|
| 163 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 164 |
+
1 NMD 1
|
| 165 |
+
|
1i32/1i32_ligand.sdf
ADDED
|
@@ -0,0 +1,155 @@
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1i32_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
72 77 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
22.8230 79.7350 -1.1320 C 0 0 0 0 0
|
| 6 |
+
23.9020 79.9230 -2.2110 C 0 0 0 0 0
|
| 7 |
+
23.4310 80.6340 -3.3530 O 0 0 0 0 0
|
| 8 |
+
25.1290 80.6880 -1.7370 C 0 0 0 0 0
|
| 9 |
+
26.3130 80.2440 -2.3960 O 0 0 0 0 0
|
| 10 |
+
24.7380 82.1400 -2.0340 C 0 0 0 0 0
|
| 11 |
+
25.8600 83.0550 -2.2250 N 0 0 0 0 0
|
| 12 |
+
23.8610 81.9980 -3.2910 C 0 0 0 0 0
|
| 13 |
+
22.7130 82.9000 -3.3940 N 0 0 0 0 0
|
| 14 |
+
22.0580 83.5870 -2.4020 C 0 0 0 0 0
|
| 15 |
+
21.0540 84.3220 -2.8270 N 0 0 0 0 0
|
| 16 |
+
21.0360 84.1100 -4.1980 C 0 0 0 0 0
|
| 17 |
+
20.2070 84.5980 -5.2650 C 0 0 0 0 0
|
| 18 |
+
19.1690 85.4560 -5.1340 N 0 0 0 0 0
|
| 19 |
+
20.4860 84.1630 -6.5290 N 0 0 0 0 0
|
| 20 |
+
21.5070 83.3100 -6.7350 C 0 0 0 0 0
|
| 21 |
+
22.3420 82.7950 -5.8200 N 0 0 0 0 0
|
| 22 |
+
22.0560 83.2320 -4.5660 C 0 0 0 0 0
|
| 23 |
+
18.6670 86.0570 -3.8940 C 0 0 0 0 0
|
| 24 |
+
19.0620 87.5020 -3.6200 C 0 0 0 0 0
|
| 25 |
+
18.7150 88.1450 -2.3740 C 0 0 0 0 0
|
| 26 |
+
17.9880 87.4810 -1.3330 C 0 0 0 0 0
|
| 27 |
+
17.6640 88.1460 -0.1160 C 0 0 0 0 0
|
| 28 |
+
18.0640 89.4950 0.0870 C 0 0 0 0 0
|
| 29 |
+
19.7870 88.2350 -4.6090 C 0 0 0 0 0
|
| 30 |
+
19.1190 89.5240 -2.1550 C 0 0 0 0 0
|
| 31 |
+
18.7880 90.1780 -0.9310 C 0 0 0 0 0
|
| 32 |
+
20.1760 89.5830 -4.3880 C 0 0 0 0 0
|
| 33 |
+
19.8420 90.2220 -3.1640 C 0 0 0 0 0
|
| 34 |
+
26.1750 84.1240 -1.4490 C 0 0 0 0 0
|
| 35 |
+
25.5440 84.3930 -0.4180 O 0 0 0 0 0
|
| 36 |
+
27.3140 84.9820 -1.8820 C 0 0 0 0 0
|
| 37 |
+
28.0180 84.6410 -3.0730 C 0 0 0 0 0
|
| 38 |
+
29.1100 85.4270 -3.5320 C 0 0 0 0 0
|
| 39 |
+
29.7380 85.0340 -4.6900 O 0 0 0 0 0
|
| 40 |
+
30.9480 84.2800 -4.5840 C 0 0 0 0 0
|
| 41 |
+
29.4950 86.5760 -2.7770 C 0 0 0 0 0
|
| 42 |
+
27.7080 86.1340 -1.1320 C 0 0 0 0 0
|
| 43 |
+
28.8020 86.9440 -1.5730 C 0 0 0 0 0
|
| 44 |
+
29.1390 88.0440 -0.8080 O 0 0 0 0 0
|
| 45 |
+
29.4950 89.2710 -1.4590 C 0 0 0 0 0
|
| 46 |
+
23.3320 78.9520 -0.0530 O 0 0 0 0 0
|
| 47 |
+
21.9669 79.2223 -1.5706 H 0 0 0 0 0
|
| 48 |
+
22.5253 80.7125 -0.7526 H 0 0 0 0 0
|
| 49 |
+
24.1661 78.8950 -2.4590 H 0 0 0 0 0
|
| 50 |
+
25.3800 80.5433 -0.6862 H 0 0 0 0 0
|
| 51 |
+
26.4868 79.3303 -2.1582 H 0 0 0 0 0
|
| 52 |
+
24.2292 82.6032 -1.1887 H 0 0 0 0 0
|
| 53 |
+
26.4692 82.8726 -3.0225 H 0 0 0 0 0
|
| 54 |
+
24.4813 82.2922 -4.1376 H 0 0 0 0 0
|
| 55 |
+
22.3456 83.5282 -1.3523 H 0 0 0 0 0
|
| 56 |
+
18.6819 85.7132 -5.9925 H 0 0 0 0 0
|
| 57 |
+
21.6750 83.0015 -7.7668 H 0 0 0 0 0
|
| 58 |
+
19.0978 85.4707 -3.0823 H 0 0 0 0 0
|
| 59 |
+
17.5804 86.0557 -3.9802 H 0 0 0 0 0
|
| 60 |
+
17.6767 86.4462 -1.4754 H 0 0 0 0 0
|
| 61 |
+
17.1087 87.6201 0.6606 H 0 0 0 0 0
|
| 62 |
+
17.8173 90.0045 1.0185 H 0 0 0 0 0
|
| 63 |
+
20.0464 87.7508 -5.5505 H 0 0 0 0 0
|
| 64 |
+
19.0929 91.2125 -0.7734 H 0 0 0 0 0
|
| 65 |
+
20.7289 90.1254 -5.1549 H 0 0 0 0 0
|
| 66 |
+
20.1419 91.2563 -2.9955 H 0 0 0 0 0
|
| 67 |
+
27.7140 83.7624 -3.6419 H 0 0 0 0 0
|
| 68 |
+
31.6934 84.8653 -4.0456 H 0 0 0 0 0
|
| 69 |
+
30.7515 83.3541 -4.0435 H 0 0 0 0 0
|
| 70 |
+
31.3185 84.0477 -5.5824 H 0 0 0 0 0
|
| 71 |
+
30.3306 87.1858 -3.1204 H 0 0 0 0 0
|
| 72 |
+
27.1722 86.3964 -0.2198 H 0 0 0 0 0
|
| 73 |
+
30.3663 89.1051 -2.0926 H 0 0 0 0 0
|
| 74 |
+
28.6594 89.6123 -2.0701 H 0 0 0 0 0
|
| 75 |
+
29.7290 90.0250 -0.7074 H 0 0 0 0 0
|
| 76 |
+
22.6484 78.8430 0.6121 H 0 0 0 0 0
|
| 77 |
+
1 2 1 0 0 0
|
| 78 |
+
1 42 1 0 0 0
|
| 79 |
+
2 3 1 0 0 0
|
| 80 |
+
2 4 1 0 0 0
|
| 81 |
+
3 8 1 0 0 0
|
| 82 |
+
4 5 1 0 0 0
|
| 83 |
+
4 6 1 0 0 0
|
| 84 |
+
6 7 1 0 0 0
|
| 85 |
+
6 8 1 0 0 0
|
| 86 |
+
7 30 1 0 0 0
|
| 87 |
+
8 9 1 0 0 0
|
| 88 |
+
9 10 4 0 0 0
|
| 89 |
+
9 18 4 0 0 0
|
| 90 |
+
10 11 4 0 0 0
|
| 91 |
+
11 12 4 0 0 0
|
| 92 |
+
12 13 4 0 0 0
|
| 93 |
+
12 18 4 0 0 0
|
| 94 |
+
13 14 1 0 0 0
|
| 95 |
+
13 15 4 0 0 0
|
| 96 |
+
14 19 1 0 0 0
|
| 97 |
+
15 16 4 0 0 0
|
| 98 |
+
16 17 4 0 0 0
|
| 99 |
+
17 18 4 0 0 0
|
| 100 |
+
19 20 1 0 0 0
|
| 101 |
+
20 21 4 0 0 0
|
| 102 |
+
20 25 4 0 0 0
|
| 103 |
+
21 22 4 0 0 0
|
| 104 |
+
21 26 4 0 0 0
|
| 105 |
+
22 23 4 0 0 0
|
| 106 |
+
23 24 4 0 0 0
|
| 107 |
+
24 27 4 0 0 0
|
| 108 |
+
25 28 4 0 0 0
|
| 109 |
+
26 27 4 0 0 0
|
| 110 |
+
26 29 4 0 0 0
|
| 111 |
+
28 29 4 0 0 0
|
| 112 |
+
30 31 2 0 0 0
|
| 113 |
+
30 32 1 0 0 0
|
| 114 |
+
32 33 4 0 0 0
|
| 115 |
+
32 38 4 0 0 0
|
| 116 |
+
33 34 4 0 0 0
|
| 117 |
+
34 35 1 0 0 0
|
| 118 |
+
34 37 4 0 0 0
|
| 119 |
+
35 36 1 0 0 0
|
| 120 |
+
37 39 4 0 0 0
|
| 121 |
+
38 39 4 0 0 0
|
| 122 |
+
39 40 1 0 0 0
|
| 123 |
+
40 41 1 0 0 0
|
| 124 |
+
1 43 1 0 0 0
|
| 125 |
+
1 44 1 0 0 0
|
| 126 |
+
2 45 1 0 0 0
|
| 127 |
+
4 46 1 0 0 0
|
| 128 |
+
5 47 1 0 0 0
|
| 129 |
+
6 48 1 0 0 0
|
| 130 |
+
7 49 1 0 0 0
|
| 131 |
+
8 50 1 0 0 0
|
| 132 |
+
10 51 1 0 0 0
|
| 133 |
+
14 52 1 0 0 0
|
| 134 |
+
16 53 1 0 0 0
|
| 135 |
+
19 54 1 0 0 0
|
| 136 |
+
19 55 1 0 0 0
|
| 137 |
+
22 56 1 0 0 0
|
| 138 |
+
23 57 1 0 0 0
|
| 139 |
+
24 58 1 0 0 0
|
| 140 |
+
25 59 1 0 0 0
|
| 141 |
+
27 60 1 0 0 0
|
| 142 |
+
28 61 1 0 0 0
|
| 143 |
+
29 62 1 0 0 0
|
| 144 |
+
33 63 1 0 0 0
|
| 145 |
+
36 64 1 0 0 0
|
| 146 |
+
36 65 1 0 0 0
|
| 147 |
+
36 66 1 0 0 0
|
| 148 |
+
37 67 1 0 0 0
|
| 149 |
+
38 68 1 0 0 0
|
| 150 |
+
41 69 1 0 0 0
|
| 151 |
+
41 70 1 0 0 0
|
| 152 |
+
41 71 1 0 0 0
|
| 153 |
+
42 72 1 0 0 0
|
| 154 |
+
M END
|
| 155 |
+
$$$$
|
1i32/1i32_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i32/1i32_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i33/1i33_ligand.mol2
ADDED
|
@@ -0,0 +1,167 @@
|
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|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1i33_ligand
|
| 7 |
+
73 78 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C5 23.0810 79.3270 -1.2230 C.3 1 TND 0.0730
|
| 14 |
+
2 C4 23.8860 79.5970 -2.5110 C.3 1 TND 0.1133
|
| 15 |
+
3 O4 23.1530 80.3810 -3.4770 O.3 1 TND -0.3371
|
| 16 |
+
4 C3 25.1990 80.3370 -2.2690 C.3 1 TND 0.1115
|
| 17 |
+
5 O3 26.2470 79.8800 -3.1240 O.3 1 TND -0.3867
|
| 18 |
+
6 C2 24.7770 81.7890 -2.4730 C.3 1 TND 0.1249
|
| 19 |
+
7 N2 25.8550 82.7590 -2.6710 N.am 1 TND -0.2753
|
| 20 |
+
8 C1 23.7800 81.6800 -3.6380 C.3 1 TND 0.1979
|
| 21 |
+
9 N9A 22.7600 82.7420 -3.7060 N.pl3 1 TND -0.1922
|
| 22 |
+
10 C8A 22.2810 83.5390 -2.6910 C.2 1 TND 0.1123
|
| 23 |
+
11 N7A 21.3630 84.4030 -3.0660 N.2 1 TND -0.2957
|
| 24 |
+
12 C5A 21.2100 84.1710 -4.4260 C.ar 1 TND 0.1048
|
| 25 |
+
13 C6A 20.3650 84.7650 -5.4510 C.ar 1 TND 0.1343
|
| 26 |
+
14 N6A 19.4650 85.7740 -5.2460 N.pl3 1 TND -0.2882
|
| 27 |
+
15 N1A 20.4800 84.2700 -6.7330 N.ar 1 TND -0.2695
|
| 28 |
+
16 C2A 21.3630 83.2670 -6.9850 C.ar 1 TND 0.0533
|
| 29 |
+
17 N3A 22.1930 82.6470 -6.1140 N.ar 1 TND -0.2714
|
| 30 |
+
18 C4A 22.0700 83.1430 -4.8460 C.ar 1 TND 0.1613
|
| 31 |
+
19 C1 19.2930 86.5550 -4.0010 C.3 1 TND 0.0723
|
| 32 |
+
20 C9 19.3880 88.0770 -4.2170 C.ar 1 TND -0.0155
|
| 33 |
+
21 C8 19.9150 88.6680 -5.5020 C.ar 1 TND -0.0646
|
| 34 |
+
22 C7 19.9820 90.1610 -5.6520 C.ar 1 TND -0.0754
|
| 35 |
+
23 C6 19.5290 91.0590 -4.5330 C.ar 1 TND -0.0755
|
| 36 |
+
24 C2 17.9800 86.1370 -3.2640 C.3 1 TND -0.0189
|
| 37 |
+
25 C10 18.9330 88.9750 -3.0990 C.ar 1 TND -0.0388
|
| 38 |
+
26 C5 19.0020 90.4740 -3.2500 C.ar 1 TND -0.0668
|
| 39 |
+
27 C3 17.4980 87.0940 -2.1020 C.3 1 TND -0.0405
|
| 40 |
+
28 C4 18.3980 88.3360 -1.8060 C.3 1 TND -0.0213
|
| 41 |
+
29 C7B 26.2490 83.6630 -1.7220 C.2 1 TND 0.2005
|
| 42 |
+
30 O7B 25.7060 83.7060 -0.6060 O.2 1 TND -0.3847
|
| 43 |
+
31 C6B 27.3150 84.6520 -2.0640 C.ar 1 TND 0.0328
|
| 44 |
+
32 C5B 28.2510 84.3590 -3.1130 C.ar 1 TND -0.0246
|
| 45 |
+
33 C4B 29.2920 85.3010 -3.4640 C.ar 1 TND 0.0875
|
| 46 |
+
34 O2M 30.1950 84.9930 -4.4830 O.3 1 TND -0.3230
|
| 47 |
+
35 C2M 30.1030 83.7500 -5.2050 C.3 1 TND 0.0592
|
| 48 |
+
36 C3B 29.3620 86.5390 -2.7370 C.ar 1 TND -0.0011
|
| 49 |
+
37 C1B 27.4060 85.8980 -1.3460 C.ar 1 TND -0.0246
|
| 50 |
+
38 C2B 28.4230 86.8530 -1.6720 C.ar 1 TND 0.0875
|
| 51 |
+
39 O1M 28.4350 88.0290 -0.9310 O.3 1 TND -0.3230
|
| 52 |
+
40 C1M 29.3370 89.1010 -1.2810 C.3 1 TND 0.0592
|
| 53 |
+
41 O5 23.9470 78.8510 -0.1820 O.3 1 TND -0.3924
|
| 54 |
+
42 H1 22.3112 78.5687 -1.4290 H 1 TND 0.0584
|
| 55 |
+
43 H2 22.5986 80.2595 -0.8949 H 1 TND 0.0584
|
| 56 |
+
44 H3 24.1171 78.6189 -2.9581 H 1 TND 0.0647
|
| 57 |
+
45 H4 25.5313 80.1918 -1.2305 H 1 TND 0.0645
|
| 58 |
+
46 H5 27.0411 80.3672 -2.9380 H 1 TND 0.2100
|
| 59 |
+
47 H6 24.2339 82.1206 -1.5757 H 1 TND 0.0638
|
| 60 |
+
48 H7 26.3311 82.7613 -3.5504 H 1 TND 0.1851
|
| 61 |
+
49 H8 24.3431 81.7025 -4.5827 H 1 TND 0.0993
|
| 62 |
+
50 H9 22.6328 83.4607 -1.6634 H 1 TND 0.1349
|
| 63 |
+
51 H10 18.8471 86.0135 -6.0345 H 1 TND 0.1883
|
| 64 |
+
52 H11 21.4077 82.9209 -8.0113 H 1 TND 0.0996
|
| 65 |
+
53 H12 20.1295 86.2837 -3.3402 H 1 TND 0.0710
|
| 66 |
+
54 H13 20.2418 88.0215 -6.3084 H 1 TND 0.0538
|
| 67 |
+
55 H14 20.3588 90.5939 -6.5716 H 1 TND 0.0541
|
| 68 |
+
56 H15 19.5825 92.1352 -4.6516 H 1 TND 0.0541
|
| 69 |
+
57 H16 18.1410 85.1385 -2.8315 H 1 TND 0.0310
|
| 70 |
+
58 H17 17.1759 86.0869 -4.0129 H 1 TND 0.0310
|
| 71 |
+
59 H18 18.6761 91.1222 -2.4446 H 1 TND 0.0537
|
| 72 |
+
60 H19 17.4381 86.4970 -1.1801 H 1 TND 0.0288
|
| 73 |
+
61 H20 16.4958 87.4625 -2.3661 H 1 TND 0.0288
|
| 74 |
+
62 H21 17.8047 89.0832 -1.2586 H 1 TND 0.0411
|
| 75 |
+
63 H22 19.2499 88.0188 -1.1866 H 1 TND 0.0411
|
| 76 |
+
64 H23 28.1768 83.4197 -3.6490 H 1 TND 0.0501
|
| 77 |
+
65 H24 30.9020 83.7043 -5.9596 H 1 TND 0.0577
|
| 78 |
+
66 H25 29.1243 83.6868 -5.7031 H 1 TND 0.0577
|
| 79 |
+
67 H26 30.2126 82.9096 -4.5037 H 1 TND 0.0577
|
| 80 |
+
68 H27 30.1343 87.2567 -2.9890 H 1 TND 0.0498
|
| 81 |
+
69 H28 26.6994 86.1145 -0.5530 H 1 TND 0.0501
|
| 82 |
+
70 H29 29.1981 89.9397 -0.5829 H 1 TND 0.0577
|
| 83 |
+
71 H30 29.1251 89.4385 -2.3063 H 1 TND 0.0577
|
| 84 |
+
72 H31 30.3748 88.7415 -1.2204 H 1 TND 0.0577
|
| 85 |
+
73 H32 23.4373 78.6896 0.6032 H 1 TND 0.2095
|
| 86 |
+
@<TRIPOS>BOND
|
| 87 |
+
1 1 2 1
|
| 88 |
+
2 1 41 1
|
| 89 |
+
3 2 3 1
|
| 90 |
+
4 2 4 1
|
| 91 |
+
5 3 8 1
|
| 92 |
+
6 4 5 1
|
| 93 |
+
7 4 6 1
|
| 94 |
+
8 6 7 1
|
| 95 |
+
9 6 8 1
|
| 96 |
+
10 7 29 am
|
| 97 |
+
11 8 9 1
|
| 98 |
+
12 9 10 1
|
| 99 |
+
13 9 18 1
|
| 100 |
+
14 10 11 2
|
| 101 |
+
15 11 12 1
|
| 102 |
+
16 12 13 ar
|
| 103 |
+
17 12 18 ar
|
| 104 |
+
18 13 14 1
|
| 105 |
+
19 13 15 ar
|
| 106 |
+
20 14 19 1
|
| 107 |
+
21 15 16 ar
|
| 108 |
+
22 16 17 ar
|
| 109 |
+
23 17 18 ar
|
| 110 |
+
24 19 20 1
|
| 111 |
+
25 19 24 1
|
| 112 |
+
26 20 21 ar
|
| 113 |
+
27 20 25 ar
|
| 114 |
+
28 21 22 ar
|
| 115 |
+
29 22 23 ar
|
| 116 |
+
30 23 26 ar
|
| 117 |
+
31 24 27 1
|
| 118 |
+
32 25 26 ar
|
| 119 |
+
33 25 28 1
|
| 120 |
+
34 27 28 1
|
| 121 |
+
35 29 30 2
|
| 122 |
+
36 29 31 1
|
| 123 |
+
37 31 32 ar
|
| 124 |
+
38 31 37 ar
|
| 125 |
+
39 32 33 ar
|
| 126 |
+
40 33 34 1
|
| 127 |
+
41 33 36 ar
|
| 128 |
+
42 34 35 1
|
| 129 |
+
43 36 38 ar
|
| 130 |
+
44 37 38 ar
|
| 131 |
+
45 38 39 1
|
| 132 |
+
46 39 40 1
|
| 133 |
+
47 1 42 1
|
| 134 |
+
48 1 43 1
|
| 135 |
+
49 2 44 1
|
| 136 |
+
50 4 45 1
|
| 137 |
+
51 5 46 1
|
| 138 |
+
52 6 47 1
|
| 139 |
+
53 7 48 1
|
| 140 |
+
54 8 49 1
|
| 141 |
+
55 10 50 1
|
| 142 |
+
56 14 51 1
|
| 143 |
+
57 16 52 1
|
| 144 |
+
58 19 53 1
|
| 145 |
+
59 21 54 1
|
| 146 |
+
60 22 55 1
|
| 147 |
+
61 23 56 1
|
| 148 |
+
62 24 57 1
|
| 149 |
+
63 24 58 1
|
| 150 |
+
64 26 59 1
|
| 151 |
+
65 27 60 1
|
| 152 |
+
66 27 61 1
|
| 153 |
+
67 28 62 1
|
| 154 |
+
68 28 63 1
|
| 155 |
+
69 32 64 1
|
| 156 |
+
70 35 65 1
|
| 157 |
+
71 35 66 1
|
| 158 |
+
72 35 67 1
|
| 159 |
+
73 36 68 1
|
| 160 |
+
74 37 69 1
|
| 161 |
+
75 40 70 1
|
| 162 |
+
76 40 71 1
|
| 163 |
+
77 40 72 1
|
| 164 |
+
78 41 73 1
|
| 165 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 166 |
+
1 TND 1
|
| 167 |
+
|
1i33/1i33_ligand.sdf
ADDED
|
@@ -0,0 +1,157 @@
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
| 1 |
+
1i33_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
73 78 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
23.0810 79.3270 -1.2230 C 0 0 0 0 0
|
| 6 |
+
23.8860 79.5970 -2.5110 C 0 0 0 0 0
|
| 7 |
+
23.1530 80.3810 -3.4770 O 0 0 0 0 0
|
| 8 |
+
25.1990 80.3370 -2.2690 C 0 0 0 0 0
|
| 9 |
+
26.2470 79.8800 -3.1240 O 0 0 0 0 0
|
| 10 |
+
24.7770 81.7890 -2.4730 C 0 0 0 0 0
|
| 11 |
+
25.8550 82.7590 -2.6710 N 0 0 0 0 0
|
| 12 |
+
23.7800 81.6800 -3.6380 C 0 0 0 0 0
|
| 13 |
+
22.7600 82.7420 -3.7060 N 0 0 0 0 0
|
| 14 |
+
22.2810 83.5390 -2.6910 C 0 0 0 0 0
|
| 15 |
+
21.3630 84.4030 -3.0660 N 0 0 0 0 0
|
| 16 |
+
21.2100 84.1710 -4.4260 C 0 0 0 0 0
|
| 17 |
+
20.3650 84.7650 -5.4510 C 0 0 0 0 0
|
| 18 |
+
19.4650 85.7740 -5.2460 N 0 0 0 0 0
|
| 19 |
+
20.4800 84.2700 -6.7330 N 0 0 0 0 0
|
| 20 |
+
21.3630 83.2670 -6.9850 C 0 0 0 0 0
|
| 21 |
+
22.1930 82.6470 -6.1140 N 0 0 0 0 0
|
| 22 |
+
22.0700 83.1430 -4.8460 C 0 0 0 0 0
|
| 23 |
+
19.2930 86.5550 -4.0010 C 0 0 0 0 0
|
| 24 |
+
19.3880 88.0770 -4.2170 C 0 0 0 0 0
|
| 25 |
+
19.9150 88.6680 -5.5020 C 0 0 0 0 0
|
| 26 |
+
19.9820 90.1610 -5.6520 C 0 0 0 0 0
|
| 27 |
+
19.5290 91.0590 -4.5330 C 0 0 0 0 0
|
| 28 |
+
17.9800 86.1370 -3.2640 C 0 0 0 0 0
|
| 29 |
+
18.9330 88.9750 -3.0990 C 0 0 0 0 0
|
| 30 |
+
19.0020 90.4740 -3.2500 C 0 0 0 0 0
|
| 31 |
+
17.4980 87.0940 -2.1020 C 0 0 0 0 0
|
| 32 |
+
18.3980 88.3360 -1.8060 C 0 0 0 0 0
|
| 33 |
+
26.2490 83.6630 -1.7220 C 0 0 0 0 0
|
| 34 |
+
25.7060 83.7060 -0.6060 O 0 0 0 0 0
|
| 35 |
+
27.3150 84.6520 -2.0640 C 0 0 0 0 0
|
| 36 |
+
28.2510 84.3590 -3.1130 C 0 0 0 0 0
|
| 37 |
+
29.2920 85.3010 -3.4640 C 0 0 0 0 0
|
| 38 |
+
30.1950 84.9930 -4.4830 O 0 0 0 0 0
|
| 39 |
+
30.1030 83.7500 -5.2050 C 0 0 0 0 0
|
| 40 |
+
29.3620 86.5390 -2.7370 C 0 0 0 0 0
|
| 41 |
+
27.4060 85.8980 -1.3460 C 0 0 0 0 0
|
| 42 |
+
28.4230 86.8530 -1.6720 C 0 0 0 0 0
|
| 43 |
+
28.4350 88.0290 -0.9310 O 0 0 0 0 0
|
| 44 |
+
29.3370 89.1010 -1.2810 C 0 0 0 0 0
|
| 45 |
+
23.9470 78.8510 -0.1820 O 0 0 0 0 0
|
| 46 |
+
22.3246 78.5698 -1.4294 H 0 0 0 0 0
|
| 47 |
+
22.6110 80.2549 -0.8971 H 0 0 0 0 0
|
| 48 |
+
24.0849 78.5954 -2.8921 H 0 0 0 0 0
|
| 49 |
+
25.6429 80.1752 -1.2867 H 0 0 0 0 0
|
| 50 |
+
26.4437 78.9618 -2.9245 H 0 0 0 0 0
|
| 51 |
+
24.3432 82.2172 -1.5693 H 0 0 0 0 0
|
| 52 |
+
26.3406 82.7614 -3.5680 H 0 0 0 0 0
|
| 53 |
+
24.3222 81.7982 -4.5762 H 0 0 0 0 0
|
| 54 |
+
22.6331 83.4606 -1.6624 H 0 0 0 0 0
|
| 55 |
+
18.8531 86.0112 -6.0268 H 0 0 0 0 0
|
| 56 |
+
21.4080 82.9190 -8.0170 H 0 0 0 0 0
|
| 57 |
+
20.1345 86.3099 -3.3530 H 0 0 0 0 0
|
| 58 |
+
20.2436 88.0179 -6.3129 H 0 0 0 0 0
|
| 59 |
+
20.3609 90.5963 -6.5767 H 0 0 0 0 0
|
| 60 |
+
19.5828 92.1411 -4.6522 H 0 0 0 0 0
|
| 61 |
+
18.1853 85.1727 -2.7991 H 0 0 0 0 0
|
| 62 |
+
17.1912 86.1497 -4.0161 H 0 0 0 0 0
|
| 63 |
+
18.6743 91.1258 -2.4401 H 0 0 0 0 0
|
| 64 |
+
17.5038 86.4927 -1.1929 H 0 0 0 0 0
|
| 65 |
+
16.5318 87.4886 -2.4163 H 0 0 0 0 0
|
| 66 |
+
17.7963 89.0778 -1.2808 H 0 0 0 0 0
|
| 67 |
+
19.2486 88.0081 -1.2085 H 0 0 0 0 0
|
| 68 |
+
28.1764 83.4145 -3.6520 H 0 0 0 0 0
|
| 69 |
+
30.2117 82.9182 -4.5091 H 0 0 0 0 0
|
| 70 |
+
29.1328 83.6886 -5.6980 H 0 0 0 0 0
|
| 71 |
+
30.8952 83.7059 -5.9524 H 0 0 0 0 0
|
| 72 |
+
30.1386 87.2607 -2.9904 H 0 0 0 0 0
|
| 73 |
+
26.6955 86.1157 -0.5486 H 0 0 0 0 0
|
| 74 |
+
30.3649 88.7435 -1.2206 H 0 0 0 0 0
|
| 75 |
+
29.1261 89.4345 -2.2971 H 0 0 0 0 0
|
| 76 |
+
29.1985 89.9314 -0.5886 H 0 0 0 0 0
|
| 77 |
+
23.4320 78.6879 0.6116 H 0 0 0 0 0
|
| 78 |
+
1 2 1 0 0 0
|
| 79 |
+
1 41 1 0 0 0
|
| 80 |
+
2 3 1 0 0 0
|
| 81 |
+
2 4 1 0 0 0
|
| 82 |
+
3 8 1 0 0 0
|
| 83 |
+
4 5 1 0 0 0
|
| 84 |
+
4 6 1 0 0 0
|
| 85 |
+
6 7 1 0 0 0
|
| 86 |
+
6 8 1 0 0 0
|
| 87 |
+
7 29 1 0 0 0
|
| 88 |
+
8 9 1 0 0 0
|
| 89 |
+
9 10 4 0 0 0
|
| 90 |
+
9 18 4 0 0 0
|
| 91 |
+
10 11 4 0 0 0
|
| 92 |
+
11 12 4 0 0 0
|
| 93 |
+
12 13 4 0 0 0
|
| 94 |
+
12 18 4 0 0 0
|
| 95 |
+
13 14 1 0 0 0
|
| 96 |
+
13 15 4 0 0 0
|
| 97 |
+
14 19 1 0 0 0
|
| 98 |
+
15 16 4 0 0 0
|
| 99 |
+
16 17 4 0 0 0
|
| 100 |
+
17 18 4 0 0 0
|
| 101 |
+
19 20 1 0 0 0
|
| 102 |
+
19 24 1 0 0 0
|
| 103 |
+
20 21 4 0 0 0
|
| 104 |
+
20 25 4 0 0 0
|
| 105 |
+
21 22 4 0 0 0
|
| 106 |
+
22 23 4 0 0 0
|
| 107 |
+
23 26 4 0 0 0
|
| 108 |
+
24 27 1 0 0 0
|
| 109 |
+
25 26 4 0 0 0
|
| 110 |
+
25 28 1 0 0 0
|
| 111 |
+
27 28 1 0 0 0
|
| 112 |
+
29 30 2 0 0 0
|
| 113 |
+
29 31 1 0 0 0
|
| 114 |
+
31 32 4 0 0 0
|
| 115 |
+
31 37 4 0 0 0
|
| 116 |
+
32 33 4 0 0 0
|
| 117 |
+
33 34 1 0 0 0
|
| 118 |
+
33 36 4 0 0 0
|
| 119 |
+
34 35 1 0 0 0
|
| 120 |
+
36 38 4 0 0 0
|
| 121 |
+
37 38 4 0 0 0
|
| 122 |
+
38 39 1 0 0 0
|
| 123 |
+
39 40 1 0 0 0
|
| 124 |
+
1 42 1 0 0 0
|
| 125 |
+
1 43 1 0 0 0
|
| 126 |
+
2 44 1 0 0 0
|
| 127 |
+
4 45 1 0 0 0
|
| 128 |
+
5 46 1 0 0 0
|
| 129 |
+
6 47 1 0 0 0
|
| 130 |
+
7 48 1 0 0 0
|
| 131 |
+
8 49 1 0 0 0
|
| 132 |
+
10 50 1 0 0 0
|
| 133 |
+
14 51 1 0 0 0
|
| 134 |
+
16 52 1 0 0 0
|
| 135 |
+
19 53 1 0 0 0
|
| 136 |
+
21 54 1 0 0 0
|
| 137 |
+
22 55 1 0 0 0
|
| 138 |
+
23 56 1 0 0 0
|
| 139 |
+
24 57 1 0 0 0
|
| 140 |
+
24 58 1 0 0 0
|
| 141 |
+
26 59 1 0 0 0
|
| 142 |
+
27 60 1 0 0 0
|
| 143 |
+
27 61 1 0 0 0
|
| 144 |
+
28 62 1 0 0 0
|
| 145 |
+
28 63 1 0 0 0
|
| 146 |
+
32 64 1 0 0 0
|
| 147 |
+
35 65 1 0 0 0
|
| 148 |
+
35 66 1 0 0 0
|
| 149 |
+
35 67 1 0 0 0
|
| 150 |
+
36 68 1 0 0 0
|
| 151 |
+
37 69 1 0 0 0
|
| 152 |
+
40 70 1 0 0 0
|
| 153 |
+
40 71 1 0 0 0
|
| 154 |
+
40 72 1 0 0 0
|
| 155 |
+
41 73 1 0 0 0
|
| 156 |
+
M END
|
| 157 |
+
$$$$
|
1i33/1i33_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i33/1i33_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lhc/1lhc_ligand.mol2
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1lhc_ligand
|
| 7 |
+
67 68 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 14.9200 -11.6050 19.6240 C.3 1 DP7 0.0533
|
| 14 |
+
2 B2 15.1520 -10.7780 18.3210 B 1 DP7 0.7164
|
| 15 |
+
3 C3 13.8680 -10.9770 20.5780 C.3 1 DP7 -0.0356
|
| 16 |
+
4 C4 13.0240 -11.9600 21.3870 C.3 1 DP7 -0.0189
|
| 17 |
+
5 C5 12.4600 -11.3720 22.6580 C.3 1 DP7 0.0626
|
| 18 |
+
6 C6 10.6870 -12.0550 24.4080 C.cat 1 DP7 0.2882
|
| 19 |
+
7 C7 18.1490 -13.1300 21.2240 C.3 1 DP7 0.1336
|
| 20 |
+
8 C8 16.8130 -12.9650 20.4300 C.2 1 DP7 0.2010
|
| 21 |
+
9 C9 19.3610 -13.0570 20.2790 C.3 1 DP7 -0.0104
|
| 22 |
+
10 C10 20.0420 -14.4220 20.2840 C.3 1 DP7 -0.0281
|
| 23 |
+
11 C11 19.4810 -15.1750 21.4100 C.3 1 DP7 0.0369
|
| 24 |
+
12 C12 17.4530 -14.8930 22.8660 C.2 1 DP7 0.2085
|
| 25 |
+
13 C13 18.1530 -16.1470 25.0630 C.3 1 DP7 0.0214
|
| 26 |
+
14 C14 17.6100 -16.2780 23.5950 C.3 1 DP7 0.1406
|
| 27 |
+
15 C15 15.8020 -17.8590 22.8860 C.2 1 DP7 0.1752
|
| 28 |
+
16 C16 14.3440 -18.2790 23.1070 C.3 1 DP7 0.0258
|
| 29 |
+
17 C17 21.9520 -15.6830 24.6230 C.ar 1 DP7 -0.0686
|
| 30 |
+
18 C18 22.2020 -14.5660 25.4200 C.ar 1 DP7 -0.0687
|
| 31 |
+
19 C19 21.1590 -13.9760 26.1020 C.ar 1 DP7 -0.0686
|
| 32 |
+
20 C20 19.8530 -14.4670 25.9800 C.ar 1 DP7 -0.0601
|
| 33 |
+
21 C21 19.5890 -15.5820 25.1850 C.ar 1 DP7 -0.0386
|
| 34 |
+
22 C22 20.6570 -16.2080 24.4980 C.ar 1 DP7 -0.0601
|
| 35 |
+
23 N1 16.2060 -11.7670 20.3800 N.am 1 DP7 -0.2918
|
| 36 |
+
24 N2 11.6320 -12.3340 23.3950 N.pl3 1 DP7 -0.2723
|
| 37 |
+
25 N3 9.9480 -12.9740 24.8340 N.pl3 1 DP7 -0.2849
|
| 38 |
+
26 N4 10.5540 -10.7490 24.9570 N.pl3 1 DP7 -0.2849
|
| 39 |
+
27 N5 18.3140 -14.4440 21.9170 N.am 1 DP7 -0.2497
|
| 40 |
+
28 N6 16.2400 -16.8490 23.6650 N.am 1 DP7 -0.2640
|
| 41 |
+
29 O1 16.3120 -11.0190 17.5080 O.3 1 DP7 -0.4967
|
| 42 |
+
30 O2 14.0400 -10.6470 17.3290 O.3 1 DP7 -0.4967
|
| 43 |
+
31 O3 16.3480 -13.9610 19.8640 O.2 1 DP7 -0.3946
|
| 44 |
+
32 O4 16.4820 -14.1910 23.2090 O.2 1 DP7 -0.3940
|
| 45 |
+
33 O5 16.5130 -18.4380 22.0500 O.2 1 DP7 -0.3972
|
| 46 |
+
34 H1 14.5590 -12.6006 19.3267 H 1 DP7 0.0431
|
| 47 |
+
35 H2 13.1835 -10.3678 19.9695 H 1 DP7 0.0276
|
| 48 |
+
36 H3 14.4025 -10.3291 21.2882 H 1 DP7 0.0276
|
| 49 |
+
37 H4 13.6537 -12.8219 21.6526 H 1 DP7 0.0299
|
| 50 |
+
38 H5 12.1864 -12.2975 20.7589 H 1 DP7 0.0299
|
| 51 |
+
39 H6 11.8434 -10.4982 22.4008 H 1 DP7 0.0689
|
| 52 |
+
40 H7 13.2936 -11.0557 23.3022 H 1 DP7 0.0689
|
| 53 |
+
41 H8 18.2013 -12.3207 21.9671 H 1 DP7 0.0802
|
| 54 |
+
42 H9 20.0637 -12.2875 20.6311 H 1 DP7 0.0313
|
| 55 |
+
43 H10 19.0266 -12.8099 19.2606 H 1 DP7 0.0313
|
| 56 |
+
44 H11 21.1278 -14.3023 20.4128 H 1 DP7 0.0287
|
| 57 |
+
45 H12 19.8406 -14.9485 19.3394 H 1 DP7 0.0287
|
| 58 |
+
46 H13 20.2344 -15.2708 22.2057 H 1 DP7 0.0524
|
| 59 |
+
47 H14 19.1749 -16.1762 21.0724 H 1 DP7 0.0524
|
| 60 |
+
48 H15 18.1404 -17.1469 25.5213 H 1 DP7 0.0474
|
| 61 |
+
49 H16 17.4765 -15.4806 25.6182 H 1 DP7 0.0474
|
| 62 |
+
50 H17 18.2788 -16.9312 23.0153 H 1 DP7 0.0823
|
| 63 |
+
51 H18 14.0928 -19.1045 22.4247 H 1 DP7 0.0467
|
| 64 |
+
52 H19 13.6817 -17.4238 22.9072 H 1 DP7 0.0467
|
| 65 |
+
53 H20 14.2115 -18.6102 24.1475 H 1 DP7 0.0467
|
| 66 |
+
54 H21 22.7716 -16.1531 24.0916 H 1 DP7 0.0599
|
| 67 |
+
55 H22 23.2061 -14.1658 25.5024 H 1 DP7 0.0559
|
| 68 |
+
56 H23 21.3522 -13.1216 26.7405 H 1 DP7 0.0599
|
| 69 |
+
57 H24 19.0421 -13.9772 26.5069 H 1 DP7 0.0557
|
| 70 |
+
58 H25 20.4763 -17.0822 23.8830 H 1 DP7 0.0557
|
| 71 |
+
59 H26 16.6122 -10.9819 20.8476 H 1 DP7 0.1840
|
| 72 |
+
60 H27 11.7536 -13.3259 23.1453 H 1 DP7 0.2642
|
| 73 |
+
61 H28 9.2568 -12.7786 25.5722 H 1 DP7 0.2615
|
| 74 |
+
62 H29 10.0322 -13.9243 24.4458 H 1 DP7 0.2615
|
| 75 |
+
63 H30 11.1541 -9.9839 24.6172 H 1 DP7 0.2615
|
| 76 |
+
64 H31 9.8577 -10.5687 25.6942 H 1 DP7 0.2615
|
| 77 |
+
65 H32 15.6033 -16.4603 24.3310 H 1 DP7 0.1884
|
| 78 |
+
66 H33 16.4415 -10.2860 16.9177 H 1 DP7 0.1667
|
| 79 |
+
67 H34 14.2243 -9.9230 16.7422 H 1 DP7 0.1667
|
| 80 |
+
@<TRIPOS>BOND
|
| 81 |
+
1 1 2 1
|
| 82 |
+
2 1 3 1
|
| 83 |
+
3 23 1 1
|
| 84 |
+
4 2 29 1
|
| 85 |
+
5 2 30 1
|
| 86 |
+
6 3 4 1
|
| 87 |
+
7 4 5 1
|
| 88 |
+
8 5 24 1
|
| 89 |
+
9 24 6 ar
|
| 90 |
+
10 6 25 ar
|
| 91 |
+
11 6 26 ar
|
| 92 |
+
12 7 8 1
|
| 93 |
+
13 7 9 1
|
| 94 |
+
14 27 7 1
|
| 95 |
+
15 8 23 am
|
| 96 |
+
16 8 31 2
|
| 97 |
+
17 10 9 1
|
| 98 |
+
18 11 10 1
|
| 99 |
+
19 27 11 1
|
| 100 |
+
20 14 12 1
|
| 101 |
+
21 12 27 am
|
| 102 |
+
22 12 32 2
|
| 103 |
+
23 13 14 1
|
| 104 |
+
24 21 13 1
|
| 105 |
+
25 14 28 1
|
| 106 |
+
26 15 16 1
|
| 107 |
+
27 28 15 am
|
| 108 |
+
28 15 33 2
|
| 109 |
+
29 18 17 ar
|
| 110 |
+
30 17 22 ar
|
| 111 |
+
31 19 18 ar
|
| 112 |
+
32 20 19 ar
|
| 113 |
+
33 20 21 ar
|
| 114 |
+
34 21 22 ar
|
| 115 |
+
35 1 34 1
|
| 116 |
+
36 3 35 1
|
| 117 |
+
37 3 36 1
|
| 118 |
+
38 4 37 1
|
| 119 |
+
39 4 38 1
|
| 120 |
+
40 5 39 1
|
| 121 |
+
41 5 40 1
|
| 122 |
+
42 7 41 1
|
| 123 |
+
43 9 42 1
|
| 124 |
+
44 9 43 1
|
| 125 |
+
45 10 44 1
|
| 126 |
+
46 10 45 1
|
| 127 |
+
47 11 46 1
|
| 128 |
+
48 11 47 1
|
| 129 |
+
49 13 48 1
|
| 130 |
+
50 13 49 1
|
| 131 |
+
51 14 50 1
|
| 132 |
+
52 16 51 1
|
| 133 |
+
53 16 52 1
|
| 134 |
+
54 16 53 1
|
| 135 |
+
55 17 54 1
|
| 136 |
+
56 18 55 1
|
| 137 |
+
57 19 56 1
|
| 138 |
+
58 20 57 1
|
| 139 |
+
59 22 58 1
|
| 140 |
+
60 23 59 1
|
| 141 |
+
61 24 60 1
|
| 142 |
+
62 25 61 1
|
| 143 |
+
63 25 62 1
|
| 144 |
+
64 26 63 1
|
| 145 |
+
65 26 64 1
|
| 146 |
+
66 28 65 1
|
| 147 |
+
67 29 66 1
|
| 148 |
+
68 30 67 1
|
| 149 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 150 |
+
1 DP7 1
|
| 151 |
+
|
1lhc/1lhc_ligand.sdf
ADDED
|
@@ -0,0 +1,139 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1lhc_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
66 67 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
14.9200 -11.6050 19.6240 C 0 0 0 0 0
|
| 6 |
+
15.1520 -10.7780 18.3210 B 0 0 0 0 0
|
| 7 |
+
13.8680 -10.9770 20.5780 C 0 0 0 0 0
|
| 8 |
+
13.0240 -11.9600 21.3870 C 0 0 0 0 0
|
| 9 |
+
12.4600 -11.3720 22.6580 C 0 0 0 0 0
|
| 10 |
+
10.6870 -12.0550 24.4080 C 0 0 0 0 0
|
| 11 |
+
18.1490 -13.1300 21.2240 C 0 0 0 0 0
|
| 12 |
+
16.8130 -12.9650 20.4300 C 0 0 0 0 0
|
| 13 |
+
19.3610 -13.0570 20.2790 C 0 0 0 0 0
|
| 14 |
+
20.0420 -14.4220 20.2840 C 0 0 0 0 0
|
| 15 |
+
19.4810 -15.1750 21.4100 C 0 0 0 0 0
|
| 16 |
+
17.4530 -14.8930 22.8660 C 0 0 0 0 0
|
| 17 |
+
18.1530 -16.1470 25.0630 C 0 0 0 0 0
|
| 18 |
+
17.6100 -16.2780 23.5950 C 0 0 0 0 0
|
| 19 |
+
15.8020 -17.8590 22.8860 C 0 0 0 0 0
|
| 20 |
+
14.3440 -18.2790 23.1070 C 0 0 0 0 0
|
| 21 |
+
21.9520 -15.6830 24.6230 C 0 0 0 0 0
|
| 22 |
+
22.2020 -14.5660 25.4200 C 0 0 0 0 0
|
| 23 |
+
21.1590 -13.9760 26.1020 C 0 0 0 0 0
|
| 24 |
+
19.8530 -14.4670 25.9800 C 0 0 0 0 0
|
| 25 |
+
19.5890 -15.5820 25.1850 C 0 0 0 0 0
|
| 26 |
+
20.6570 -16.2080 24.4980 C 0 0 0 0 0
|
| 27 |
+
16.2060 -11.7670 20.3800 N 0 0 0 0 0
|
| 28 |
+
11.6320 -12.3340 23.3950 N 0 0 0 0 0
|
| 29 |
+
9.9480 -12.9740 24.8340 N 0 0 0 0 0
|
| 30 |
+
10.5540 -10.7490 24.9570 N 0 0 0 0 0
|
| 31 |
+
18.3140 -14.4440 21.9170 N 0 0 0 0 0
|
| 32 |
+
16.2400 -16.8490 23.6650 N 0 0 0 0 0
|
| 33 |
+
16.3120 -11.0190 17.5080 O 0 0 0 0 0
|
| 34 |
+
14.0400 -10.6470 17.3290 O 0 0 0 0 0
|
| 35 |
+
16.3480 -13.9610 19.8640 O 0 0 0 0 0
|
| 36 |
+
16.4820 -14.1910 23.2090 O 0 0 0 0 0
|
| 37 |
+
16.5130 -18.4380 22.0500 O 0 0 0 0 0
|
| 38 |
+
14.5366 -12.5702 19.2931 H 0 0 0 0 0
|
| 39 |
+
13.1724 -10.4258 19.9453 H 0 0 0 0 0
|
| 40 |
+
14.4275 -10.3859 21.3031 H 0 0 0 0 0
|
| 41 |
+
13.6718 -12.7894 21.6708 H 0 0 0 0 0
|
| 42 |
+
12.1811 -12.2566 20.7628 H 0 0 0 0 0
|
| 43 |
+
11.8334 -10.5217 22.3891 H 0 0 0 0 0
|
| 44 |
+
13.2944 -11.0834 23.2972 H 0 0 0 0 0
|
| 45 |
+
18.1009 -12.3234 21.9556 H 0 0 0 0 0
|
| 46 |
+
20.0558 -12.2872 20.6148 H 0 0 0 0 0
|
| 47 |
+
19.0382 -12.7998 19.2702 H 0 0 0 0 0
|
| 48 |
+
21.1215 -14.3147 20.3906 H 0 0 0 0 0
|
| 49 |
+
19.8662 -14.9448 19.3439 H 0 0 0 0 0
|
| 50 |
+
20.2270 -15.2811 22.1976 H 0 0 0 0 0
|
| 51 |
+
19.1848 -16.1717 21.0829 H 0 0 0 0 0
|
| 52 |
+
18.1758 -17.1539 25.4798 H 0 0 0 0 0
|
| 53 |
+
17.4958 -15.4470 25.5790 H 0 0 0 0 0
|
| 54 |
+
18.3252 -16.8911 23.0467 H 0 0 0 0 0
|
| 55 |
+
13.7887 -18.1629 22.1762 H 0 0 0 0 0
|
| 56 |
+
14.3115 -19.3216 23.4233 H 0 0 0 0 0
|
| 57 |
+
13.8989 -17.6500 23.8780 H 0 0 0 0 0
|
| 58 |
+
22.7761 -16.1557 24.0886 H 0 0 0 0 0
|
| 59 |
+
23.2116 -14.1636 25.5028 H 0 0 0 0 0
|
| 60 |
+
21.3533 -13.1168 26.7440 H 0 0 0 0 0
|
| 61 |
+
19.0377 -13.9745 26.5098 H 0 0 0 0 0
|
| 62 |
+
20.4753 -17.0870 23.8796 H 0 0 0 0 0
|
| 63 |
+
16.6203 -10.9662 20.8569 H 0 0 0 0 0
|
| 64 |
+
11.7524 -13.3162 23.1477 H 0 0 0 0 0
|
| 65 |
+
10.0314 -13.9151 24.4495 H 0 0 0 0 0
|
| 66 |
+
9.8644 -10.5705 25.6871 H 0 0 0 0 0
|
| 67 |
+
11.1482 -9.9914 24.6205 H 0 0 0 0 0
|
| 68 |
+
15.5906 -16.4525 24.3443 H 0 0 0 0 0
|
| 69 |
+
17.0823 -11.1167 18.0725 H 0 0 0 0 0
|
| 70 |
+
13.2161 -10.4822 17.7934 H 0 0 0 0 0
|
| 71 |
+
1 2 1 0 0 0
|
| 72 |
+
1 3 1 0 0 0
|
| 73 |
+
23 1 1 0 0 0
|
| 74 |
+
2 29 1 0 0 0
|
| 75 |
+
2 30 1 0 0 0
|
| 76 |
+
3 4 1 0 0 0
|
| 77 |
+
4 5 1 0 0 0
|
| 78 |
+
5 24 1 0 0 0
|
| 79 |
+
24 6 1 0 0 0
|
| 80 |
+
6 25 2 0 0 0
|
| 81 |
+
6 26 1 0 0 0
|
| 82 |
+
7 8 1 0 0 0
|
| 83 |
+
7 9 1 0 0 0
|
| 84 |
+
27 7 1 0 0 0
|
| 85 |
+
8 23 1 0 0 0
|
| 86 |
+
8 31 2 0 0 0
|
| 87 |
+
10 9 1 0 0 0
|
| 88 |
+
11 10 1 0 0 0
|
| 89 |
+
27 11 1 0 0 0
|
| 90 |
+
14 12 1 0 0 0
|
| 91 |
+
12 27 1 0 0 0
|
| 92 |
+
12 32 2 0 0 0
|
| 93 |
+
13 14 1 0 0 0
|
| 94 |
+
21 13 1 0 0 0
|
| 95 |
+
14 28 1 0 0 0
|
| 96 |
+
15 16 1 0 0 0
|
| 97 |
+
28 15 1 0 0 0
|
| 98 |
+
15 33 2 0 0 0
|
| 99 |
+
18 17 4 0 0 0
|
| 100 |
+
17 22 4 0 0 0
|
| 101 |
+
19 18 4 0 0 0
|
| 102 |
+
20 19 4 0 0 0
|
| 103 |
+
20 21 4 0 0 0
|
| 104 |
+
21 22 4 0 0 0
|
| 105 |
+
1 34 1 0 0 0
|
| 106 |
+
3 35 1 0 0 0
|
| 107 |
+
3 36 1 0 0 0
|
| 108 |
+
4 37 1 0 0 0
|
| 109 |
+
4 38 1 0 0 0
|
| 110 |
+
5 39 1 0 0 0
|
| 111 |
+
5 40 1 0 0 0
|
| 112 |
+
7 41 1 0 0 0
|
| 113 |
+
9 42 1 0 0 0
|
| 114 |
+
9 43 1 0 0 0
|
| 115 |
+
10 44 1 0 0 0
|
| 116 |
+
10 45 1 0 0 0
|
| 117 |
+
11 46 1 0 0 0
|
| 118 |
+
11 47 1 0 0 0
|
| 119 |
+
13 48 1 0 0 0
|
| 120 |
+
13 49 1 0 0 0
|
| 121 |
+
14 50 1 0 0 0
|
| 122 |
+
16 51 1 0 0 0
|
| 123 |
+
16 52 1 0 0 0
|
| 124 |
+
16 53 1 0 0 0
|
| 125 |
+
17 54 1 0 0 0
|
| 126 |
+
18 55 1 0 0 0
|
| 127 |
+
19 56 1 0 0 0
|
| 128 |
+
20 57 1 0 0 0
|
| 129 |
+
22 58 1 0 0 0
|
| 130 |
+
23 59 1 0 0 0
|
| 131 |
+
24 60 1 0 0 0
|
| 132 |
+
25 61 1 0 0 0
|
| 133 |
+
26 62 1 0 0 0
|
| 134 |
+
26 63 1 0 0 0
|
| 135 |
+
28 64 1 0 0 0
|
| 136 |
+
29 65 1 0 0 0
|
| 137 |
+
30 66 1 0 0 0
|
| 138 |
+
M END
|
| 139 |
+
$$$$
|
1lhc/1lhc_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lhc/1lhc_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1o3j/1o3j_ligand.mol2
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1o3j_ligand
|
| 7 |
+
35 37 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 44.1980 -3.0840 26.0990 C.ar 1 334 0.0108
|
| 14 |
+
2 C2 44.6300 -1.7460 26.1740 C.ar 1 334 -0.0697
|
| 15 |
+
3 C3 44.5890 -1.0420 27.3690 C.ar 1 334 -0.0400
|
| 16 |
+
4 C4 44.1150 -1.6840 28.4810 C.ar 1 334 0.0805
|
| 17 |
+
5 C5 43.6790 -2.9550 28.4740 C.ar 1 334 0.0295
|
| 18 |
+
6 C6 43.7050 -3.7020 27.2840 C.ar 1 334 -0.0569
|
| 19 |
+
7 C7 44.2690 -3.7640 24.8580 C.cat 1 334 0.2290
|
| 20 |
+
8 N1 43.8920 -5.0210 24.7680 N.pl3 1 334 -0.2732
|
| 21 |
+
9 N2 44.7160 -3.1280 23.7960 N.pl3 1 334 -0.2732
|
| 22 |
+
10 N3 43.9770 -1.2760 29.6820 N.pl3 1 334 -0.2512
|
| 23 |
+
11 N4 43.2690 -3.3480 29.6670 N.2 1 334 -0.3105
|
| 24 |
+
12 C8 43.4790 -2.2480 30.3870 C.2 1 334 0.1354
|
| 25 |
+
13 C1' 43.2550 -2.0950 31.7790 C.ar 1 334 0.0614
|
| 26 |
+
14 C2' 42.9140 -3.1900 32.5880 C.ar 1 334 -0.0475
|
| 27 |
+
15 C3' 42.6990 -3.0160 33.9660 C.ar 1 334 -0.0486
|
| 28 |
+
16 C31' 42.3240 -4.1950 34.8770 C.3 1 334 -0.0346
|
| 29 |
+
17 C4' 42.8260 -1.7580 34.5460 C.ar 1 334 -0.0546
|
| 30 |
+
18 C5' 43.1690 -0.6520 33.7620 C.ar 1 334 0.0412
|
| 31 |
+
19 C6' 43.3760 -0.8220 32.3860 C.ar 1 334 0.1128
|
| 32 |
+
20 O6' 43.6720 0.2990 31.6290 O.3 1 334 -0.3285
|
| 33 |
+
21 BR5' 43.4270 1.1160 34.5720 Br 1 334 -0.0583
|
| 34 |
+
22 H1 45.0017 -1.2565 25.2811 H 1 334 0.0541
|
| 35 |
+
23 H2 44.9231 -0.0121 27.4205 H 1 334 0.0544
|
| 36 |
+
24 H3 43.3567 -4.7284 27.2681 H 1 334 0.0548
|
| 37 |
+
25 H4 43.9454 -5.5112 23.8637 H 1 334 0.3180
|
| 38 |
+
26 H5 43.5434 -5.5151 25.6018 H 1 334 0.3180
|
| 39 |
+
27 H6 45.0101 -2.1437 23.8710 H 1 334 0.3180
|
| 40 |
+
28 H7 44.7717 -3.6145 22.8898 H 1 334 0.3180
|
| 41 |
+
29 H8 44.2186 -0.3381 30.0325 H 1 334 0.2296
|
| 42 |
+
30 H9 42.8159 -4.1756 32.1475 H 1 334 0.0594
|
| 43 |
+
31 H10 42.2039 -3.8364 35.9100 H 1 334 0.0371
|
| 44 |
+
32 H11 43.1204 -4.9530 34.8423 H 1 334 0.0371
|
| 45 |
+
33 H12 41.3792 -4.6397 34.5311 H 1 334 0.0371
|
| 46 |
+
34 H13 42.6584 -1.6346 35.6098 H 1 334 0.0595
|
| 47 |
+
35 H14 44.4724 0.6957 31.9522 H 1 334 0.2512
|
| 48 |
+
@<TRIPOS>BOND
|
| 49 |
+
1 1 2 ar
|
| 50 |
+
2 1 6 ar
|
| 51 |
+
3 1 7 1
|
| 52 |
+
4 2 3 ar
|
| 53 |
+
5 3 4 ar
|
| 54 |
+
6 4 5 ar
|
| 55 |
+
7 4 10 1
|
| 56 |
+
8 5 6 ar
|
| 57 |
+
9 5 11 1
|
| 58 |
+
10 7 8 ar
|
| 59 |
+
11 7 9 ar
|
| 60 |
+
12 10 12 1
|
| 61 |
+
13 11 12 2
|
| 62 |
+
14 12 13 1
|
| 63 |
+
15 13 14 ar
|
| 64 |
+
16 13 19 ar
|
| 65 |
+
17 14 15 ar
|
| 66 |
+
18 15 16 1
|
| 67 |
+
19 15 17 ar
|
| 68 |
+
20 17 18 ar
|
| 69 |
+
21 18 19 ar
|
| 70 |
+
22 18 21 1
|
| 71 |
+
23 19 20 1
|
| 72 |
+
24 2 22 1
|
| 73 |
+
25 3 23 1
|
| 74 |
+
26 6 24 1
|
| 75 |
+
27 8 25 1
|
| 76 |
+
28 8 26 1
|
| 77 |
+
29 9 27 1
|
| 78 |
+
30 9 28 1
|
| 79 |
+
31 10 29 1
|
| 80 |
+
32 14 30 1
|
| 81 |
+
33 16 31 1
|
| 82 |
+
34 16 32 1
|
| 83 |
+
35 16 33 1
|
| 84 |
+
36 17 34 1
|
| 85 |
+
37 20 35 1
|
| 86 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 87 |
+
1 334 1
|
| 88 |
+
|
1o3j/1o3j_ligand.sdf
ADDED
|
@@ -0,0 +1,74 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1o3j_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
33 35 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
44.1980 -3.0840 26.0990 C 0 0 0 0 0
|
| 6 |
+
44.6300 -1.7460 26.1740 C 0 0 0 0 0
|
| 7 |
+
44.5890 -1.0420 27.3690 C 0 0 0 0 0
|
| 8 |
+
44.1150 -1.6840 28.4810 C 0 0 0 0 0
|
| 9 |
+
43.6790 -2.9550 28.4740 C 0 0 0 0 0
|
| 10 |
+
43.7050 -3.7020 27.2840 C 0 0 0 0 0
|
| 11 |
+
44.2690 -3.7640 24.8580 C 0 0 0 0 0
|
| 12 |
+
43.8920 -5.0210 24.7680 N 0 0 0 0 0
|
| 13 |
+
44.7160 -3.1280 23.7960 N 0 0 0 0 0
|
| 14 |
+
43.9770 -1.2760 29.6820 N 0 0 0 0 0
|
| 15 |
+
43.2690 -3.3480 29.6670 N 0 0 0 0 0
|
| 16 |
+
43.4790 -2.2480 30.3870 C 0 0 0 0 0
|
| 17 |
+
43.2550 -2.0950 31.7790 C 0 0 0 0 0
|
| 18 |
+
42.9140 -3.1900 32.5880 C 0 0 0 0 0
|
| 19 |
+
42.6990 -3.0160 33.9660 C 0 0 0 0 0
|
| 20 |
+
42.3240 -4.1950 34.8770 C 0 0 0 0 0
|
| 21 |
+
42.8260 -1.7580 34.5460 C 0 0 0 0 0
|
| 22 |
+
43.1690 -0.6520 33.7620 C 0 0 0 0 0
|
| 23 |
+
43.3760 -0.8220 32.3860 C 0 0 0 0 0
|
| 24 |
+
43.6720 0.2990 31.6290 O 0 0 0 0 0
|
| 25 |
+
43.4270 1.1160 34.5720 Br 0 0 0 0 0
|
| 26 |
+
45.0038 -1.2538 25.2762 H 0 0 0 0 0
|
| 27 |
+
44.9250 -0.0064 27.4207 H 0 0 0 0 0
|
| 28 |
+
43.3548 -4.7341 27.2680 H 0 0 0 0 0
|
| 29 |
+
43.9455 -5.5066 23.8726 H 0 0 0 0 0
|
| 30 |
+
44.7711 -3.6098 22.8986 H 0 0 0 0 0
|
| 31 |
+
45.0073 -2.1533 23.8703 H 0 0 0 0 0
|
| 32 |
+
42.8153 -4.1810 32.1451 H 0 0 0 0 0
|
| 33 |
+
41.3878 -4.6347 34.5332 H 0 0 0 0 0
|
| 34 |
+
43.1139 -4.9453 34.8417 H 0 0 0 0 0
|
| 35 |
+
42.2053 -3.8385 35.9002 H 0 0 0 0 0
|
| 36 |
+
42.6575 -1.6339 35.6157 H 0 0 0 0 0
|
| 37 |
+
43.7149 1.0683 32.2017 H 0 0 0 0 0
|
| 38 |
+
1 2 4 0 0 0
|
| 39 |
+
1 6 4 0 0 0
|
| 40 |
+
1 7 1 0 0 0
|
| 41 |
+
2 3 4 0 0 0
|
| 42 |
+
3 4 4 0 0 0
|
| 43 |
+
4 5 4 0 0 0
|
| 44 |
+
4 10 4 0 0 0
|
| 45 |
+
5 6 4 0 0 0
|
| 46 |
+
5 11 4 0 0 0
|
| 47 |
+
7 8 2 0 0 0
|
| 48 |
+
7 9 1 0 0 0
|
| 49 |
+
10 12 4 0 0 0
|
| 50 |
+
11 12 4 0 0 0
|
| 51 |
+
12 13 1 0 0 0
|
| 52 |
+
13 14 4 0 0 0
|
| 53 |
+
13 19 4 0 0 0
|
| 54 |
+
14 15 4 0 0 0
|
| 55 |
+
15 16 1 0 0 0
|
| 56 |
+
15 17 4 0 0 0
|
| 57 |
+
17 18 4 0 0 0
|
| 58 |
+
18 19 4 0 0 0
|
| 59 |
+
18 21 1 0 0 0
|
| 60 |
+
19 20 1 0 0 0
|
| 61 |
+
2 22 1 0 0 0
|
| 62 |
+
3 23 1 0 0 0
|
| 63 |
+
6 24 1 0 0 0
|
| 64 |
+
8 25 1 0 0 0
|
| 65 |
+
9 26 1 0 0 0
|
| 66 |
+
9 27 1 0 0 0
|
| 67 |
+
14 28 1 0 0 0
|
| 68 |
+
16 29 1 0 0 0
|
| 69 |
+
16 30 1 0 0 0
|
| 70 |
+
16 31 1 0 0 0
|
| 71 |
+
17 32 1 0 0 0
|
| 72 |
+
20 33 1 0 0 0
|
| 73 |
+
M END
|
| 74 |
+
$$$$
|
1o3j/1o3j_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1o3j/1o3j_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1pxp/1pxp_ligand.mol2
ADDED
|
@@ -0,0 +1,102 @@
|
|
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|
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|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1pxp_ligand
|
| 7 |
+
42 44 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C6 25.8400 38.9330 7.6930 C.ar 1 CK8 0.0021
|
| 14 |
+
2 N1 24.8070 39.6250 7.1580 N.ar 1 CK8 -0.2659
|
| 15 |
+
3 C2 24.6340 40.8890 7.5400 C.ar 1 CK8 0.1934
|
| 16 |
+
4 N3 25.4070 41.5310 8.4140 N.ar 1 CK8 -0.2656
|
| 17 |
+
5 C4 26.4580 40.9120 8.9870 C.ar 1 CK8 0.0421
|
| 18 |
+
6 C5 26.7260 39.5300 8.6380 C.ar 1 CK8 -0.0295
|
| 19 |
+
7 C5A 27.2300 41.7030 9.9210 C.2 1 CK8 0.0669
|
| 20 |
+
8 C1A 28.4880 41.5580 10.5510 C.2 1 CK8 0.0145
|
| 21 |
+
9 N2A 28.8380 42.5880 11.3930 N.2 1 CK8 -0.2960
|
| 22 |
+
10 C3A 27.8800 43.5160 11.4230 C.2 1 CK8 0.0971
|
| 23 |
+
11 S4A 26.5200 43.2120 10.4510 S.3 1 CK8 -0.0005
|
| 24 |
+
12 C6A 29.4860 40.4140 10.4090 C.3 1 CK8 -0.0221
|
| 25 |
+
13 C7A 27.9500 44.7810 12.2540 C.3 1 CK8 0.0113
|
| 26 |
+
14 N7 23.5220 41.5710 6.9430 N.pl3 1 CK8 -0.2510
|
| 27 |
+
15 C1B 22.9310 42.8980 7.0440 C.ar 1 CK8 0.0528
|
| 28 |
+
16 C2B 23.4270 43.9110 7.9250 C.ar 1 CK8 -0.0489
|
| 29 |
+
17 C3B 22.8120 45.1810 7.9760 C.ar 1 CK8 -0.0529
|
| 30 |
+
18 C4B 21.6760 45.4890 7.1470 C.ar 1 CK8 0.0289
|
| 31 |
+
19 C5B 21.1900 44.4540 6.2710 C.ar 1 CK8 -0.0529
|
| 32 |
+
20 C6B 21.8070 43.1830 6.2250 C.ar 1 CK8 -0.0489
|
| 33 |
+
21 N7B 21.0260 46.8450 7.1980 N.pl3 1 CK8 -0.3208
|
| 34 |
+
22 C8B 19.8470 47.2080 6.3560 C.3 1 CK8 0.0130
|
| 35 |
+
23 C9B 21.5130 47.9360 8.0960 C.3 1 CK8 0.0130
|
| 36 |
+
24 H1 25.9974 37.9022 7.3967 H 1 CK8 0.0852
|
| 37 |
+
25 H2 27.5541 38.9810 9.0715 H 1 CK8 0.0601
|
| 38 |
+
26 H3 30.3658 40.6148 11.0380 H 1 CK8 0.0414
|
| 39 |
+
27 H4 29.7987 40.3285 9.3579 H 1 CK8 0.0414
|
| 40 |
+
28 H5 29.0136 39.4735 10.7287 H 1 CK8 0.0414
|
| 41 |
+
29 H6 28.8979 44.8013 12.8117 H 1 CK8 0.0510
|
| 42 |
+
30 H7 27.1079 44.8021 12.9614 H 1 CK8 0.0510
|
| 43 |
+
31 H8 27.8951 45.6580 11.5923 H 1 CK8 0.0510
|
| 44 |
+
32 H9 23.0147 40.9721 6.2760 H 1 CK8 0.2143
|
| 45 |
+
33 H10 24.2816 43.7016 8.5581 H 1 CK8 0.0507
|
| 46 |
+
34 H11 23.2012 45.9357 8.6498 H 1 CK8 0.0490
|
| 47 |
+
35 H12 20.3351 44.6535 5.6351 H 1 CK8 0.0490
|
| 48 |
+
36 H13 21.4190 42.4204 5.5595 H 1 CK8 0.0507
|
| 49 |
+
37 H14 19.5514 48.2463 6.5671 H 1 CK8 0.0473
|
| 50 |
+
38 H15 19.0093 46.5339 6.5880 H 1 CK8 0.0473
|
| 51 |
+
39 H16 20.1120 47.1112 5.2928 H 1 CK8 0.0473
|
| 52 |
+
40 H17 22.3781 47.5772 8.6729 H 1 CK8 0.0473
|
| 53 |
+
41 H18 20.7083 48.2295 8.7862 H 1 CK8 0.0473
|
| 54 |
+
42 H19 21.8110 48.8042 7.4899 H 1 CK8 0.0473
|
| 55 |
+
@<TRIPOS>BOND
|
| 56 |
+
1 1 2 ar
|
| 57 |
+
2 1 6 ar
|
| 58 |
+
3 2 3 ar
|
| 59 |
+
4 3 4 ar
|
| 60 |
+
5 3 14 1
|
| 61 |
+
6 4 5 ar
|
| 62 |
+
7 5 6 ar
|
| 63 |
+
8 5 7 1
|
| 64 |
+
9 7 8 2
|
| 65 |
+
10 7 11 1
|
| 66 |
+
11 8 9 1
|
| 67 |
+
12 8 12 1
|
| 68 |
+
13 9 10 2
|
| 69 |
+
14 10 11 1
|
| 70 |
+
15 10 13 1
|
| 71 |
+
16 14 15 1
|
| 72 |
+
17 15 16 ar
|
| 73 |
+
18 15 20 ar
|
| 74 |
+
19 16 17 ar
|
| 75 |
+
20 17 18 ar
|
| 76 |
+
21 18 19 ar
|
| 77 |
+
22 18 21 1
|
| 78 |
+
23 19 20 ar
|
| 79 |
+
24 21 22 1
|
| 80 |
+
25 21 23 1
|
| 81 |
+
26 1 24 1
|
| 82 |
+
27 6 25 1
|
| 83 |
+
28 12 26 1
|
| 84 |
+
29 12 27 1
|
| 85 |
+
30 12 28 1
|
| 86 |
+
31 13 29 1
|
| 87 |
+
32 13 30 1
|
| 88 |
+
33 13 31 1
|
| 89 |
+
34 14 32 1
|
| 90 |
+
35 16 33 1
|
| 91 |
+
36 17 34 1
|
| 92 |
+
37 19 35 1
|
| 93 |
+
38 20 36 1
|
| 94 |
+
39 22 37 1
|
| 95 |
+
40 22 38 1
|
| 96 |
+
41 22 39 1
|
| 97 |
+
42 23 40 1
|
| 98 |
+
43 23 41 1
|
| 99 |
+
44 23 42 1
|
| 100 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 101 |
+
1 CK8 1
|
| 102 |
+
|
1pxp/1pxp_ligand.sdf
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1pxp_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
42 44 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
25.8400 38.9330 7.6930 C 0 0 0 0 0
|
| 6 |
+
24.8070 39.6250 7.1580 N 0 0 0 0 0
|
| 7 |
+
24.6340 40.8890 7.5400 C 0 0 0 0 0
|
| 8 |
+
25.4070 41.5310 8.4140 N 0 0 0 0 0
|
| 9 |
+
26.4580 40.9120 8.9870 C 0 0 0 0 0
|
| 10 |
+
26.7260 39.5300 8.6380 C 0 0 0 0 0
|
| 11 |
+
27.2300 41.7030 9.9210 C 0 0 0 0 0
|
| 12 |
+
28.4880 41.5580 10.5510 C 0 0 0 0 0
|
| 13 |
+
28.8380 42.5880 11.3930 N 0 0 0 0 0
|
| 14 |
+
27.8800 43.5160 11.4230 C 0 0 0 0 0
|
| 15 |
+
26.5200 43.2120 10.4510 S 0 0 0 0 0
|
| 16 |
+
29.4860 40.4140 10.4090 C 0 0 0 0 0
|
| 17 |
+
27.9500 44.7810 12.2540 C 0 0 0 0 0
|
| 18 |
+
23.5220 41.5710 6.9430 N 0 0 0 0 0
|
| 19 |
+
22.9310 42.8980 7.0440 C 0 0 0 0 0
|
| 20 |
+
23.4270 43.9110 7.9250 C 0 0 0 0 0
|
| 21 |
+
22.8120 45.1810 7.9760 C 0 0 0 0 0
|
| 22 |
+
21.6760 45.4890 7.1470 C 0 0 0 0 0
|
| 23 |
+
21.1900 44.4540 6.2710 C 0 0 0 0 0
|
| 24 |
+
21.8070 43.1830 6.2250 C 0 0 0 0 0
|
| 25 |
+
21.0260 46.8450 7.1980 N 0 0 0 0 0
|
| 26 |
+
19.8470 47.2080 6.3560 C 0 0 0 0 0
|
| 27 |
+
21.5130 47.9360 8.0960 C 0 0 0 0 0
|
| 28 |
+
25.9983 37.8965 7.3950 H 0 0 0 0 0
|
| 29 |
+
27.5587 38.9780 9.0739 H 0 0 0 0 0
|
| 30 |
+
29.0167 39.4827 10.7261 H 0 0 0 0 0
|
| 31 |
+
29.7950 40.3303 9.3671 H 0 0 0 0 0
|
| 32 |
+
30.3572 40.6141 11.0327 H 0 0 0 0 0
|
| 33 |
+
28.0385 44.5174 13.3079 H 0 0 0 0 0
|
| 34 |
+
28.8181 45.3661 11.9504 H 0 0 0 0 0
|
| 35 |
+
27.0436 45.3664 12.0994 H 0 0 0 0 0
|
| 36 |
+
23.0196 40.9780 6.2825 H 0 0 0 0 0
|
| 37 |
+
24.2863 43.7004 8.5616 H 0 0 0 0 0
|
| 38 |
+
23.2034 45.9399 8.6535 H 0 0 0 0 0
|
| 39 |
+
20.3303 44.6546 5.6316 H 0 0 0 0 0
|
| 40 |
+
21.4169 42.4161 5.5558 H 0 0 0 0 0
|
| 41 |
+
20.1108 47.1117 5.3028 H 0 0 0 0 0
|
| 42 |
+
19.0177 46.5394 6.5868 H 0 0 0 0 0
|
| 43 |
+
19.5551 48.2370 6.5661 H 0 0 0 0 0
|
| 44 |
+
21.4555 47.6043 9.1327 H 0 0 0 0 0
|
| 45 |
+
22.5467 48.1758 7.8467 H 0 0 0 0 0
|
| 46 |
+
20.8908 48.8207 7.9612 H 0 0 0 0 0
|
| 47 |
+
1 2 4 0 0 0
|
| 48 |
+
1 6 4 0 0 0
|
| 49 |
+
2 3 4 0 0 0
|
| 50 |
+
3 4 4 0 0 0
|
| 51 |
+
3 14 1 0 0 0
|
| 52 |
+
4 5 4 0 0 0
|
| 53 |
+
5 6 4 0 0 0
|
| 54 |
+
5 7 1 0 0 0
|
| 55 |
+
7 8 4 0 0 0
|
| 56 |
+
7 11 4 0 0 0
|
| 57 |
+
8 9 4 0 0 0
|
| 58 |
+
8 12 1 0 0 0
|
| 59 |
+
9 10 4 0 0 0
|
| 60 |
+
10 11 4 0 0 0
|
| 61 |
+
10 13 1 0 0 0
|
| 62 |
+
14 15 1 0 0 0
|
| 63 |
+
15 16 4 0 0 0
|
| 64 |
+
15 20 4 0 0 0
|
| 65 |
+
16 17 4 0 0 0
|
| 66 |
+
17 18 4 0 0 0
|
| 67 |
+
18 19 4 0 0 0
|
| 68 |
+
18 21 1 0 0 0
|
| 69 |
+
19 20 4 0 0 0
|
| 70 |
+
21 22 1 0 0 0
|
| 71 |
+
21 23 1 0 0 0
|
| 72 |
+
1 24 1 0 0 0
|
| 73 |
+
6 25 1 0 0 0
|
| 74 |
+
12 26 1 0 0 0
|
| 75 |
+
12 27 1 0 0 0
|
| 76 |
+
12 28 1 0 0 0
|
| 77 |
+
13 29 1 0 0 0
|
| 78 |
+
13 30 1 0 0 0
|
| 79 |
+
13 31 1 0 0 0
|
| 80 |
+
14 32 1 0 0 0
|
| 81 |
+
16 33 1 0 0 0
|
| 82 |
+
17 34 1 0 0 0
|
| 83 |
+
19 35 1 0 0 0
|
| 84 |
+
20 36 1 0 0 0
|
| 85 |
+
22 37 1 0 0 0
|
| 86 |
+
22 38 1 0 0 0
|
| 87 |
+
22 39 1 0 0 0
|
| 88 |
+
23 40 1 0 0 0
|
| 89 |
+
23 41 1 0 0 0
|
| 90 |
+
23 42 1 0 0 0
|
| 91 |
+
M END
|
| 92 |
+
$$$$
|
1pxp/1pxp_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1pxp/1pxp_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1uu9/1uu9_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1uu9/1uu9_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1x7b/1x7b_ligand.mol2
ADDED
|
@@ -0,0 +1,78 @@
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| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1x7b_ligand
|
| 7 |
+
30 32 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 32.6400 37.6170 35.8010 C.ar 1 041 -0.0343
|
| 14 |
+
2 C2 31.3210 37.9160 36.2740 C.ar 1 041 0.0037
|
| 15 |
+
3 C3 30.8000 37.1700 37.3600 C.ar 1 041 0.1432
|
| 16 |
+
4 C4 31.5580 36.1150 38.0040 C.ar 1 041 0.0393
|
| 17 |
+
5 C5 32.8680 35.8300 37.5210 C.ar 1 041 -0.0307
|
| 18 |
+
6 C6 33.4090 36.5770 36.4230 C.ar 1 041 0.0751
|
| 19 |
+
7 O9 29.6100 37.2450 37.9950 O.3 1 041 -0.2264
|
| 20 |
+
8 C10 29.5810 36.3170 38.9840 C.2 1 041 0.1933
|
| 21 |
+
9 N11 30.7540 35.6090 39.0150 N.2 1 041 -0.2966
|
| 22 |
+
10 C12 28.4060 36.1630 39.8870 C.ar 1 041 0.0344
|
| 23 |
+
11 C13 28.5480 35.5620 41.1890 C.ar 1 041 -0.0538
|
| 24 |
+
12 C14 27.4280 35.4370 42.0620 C.ar 1 041 -0.0272
|
| 25 |
+
13 C15 26.1530 35.9250 41.6190 C.ar 1 041 0.1284
|
| 26 |
+
14 C16 26.0230 36.5210 40.3230 C.ar 1 041 0.1663
|
| 27 |
+
15 C17 27.1300 36.6450 39.4540 C.ar 1 041 -0.0165
|
| 28 |
+
16 O21 34.6790 36.3130 35.9550 O.3 1 041 -0.3400
|
| 29 |
+
17 F22 24.8090 36.9640 39.9610 F 1 041 -0.1884
|
| 30 |
+
18 O23 25.0730 35.8110 42.4620 O.3 1 041 -0.3282
|
| 31 |
+
19 C24 30.5070 38.9990 35.6340 C.2 1 041 -0.0672
|
| 32 |
+
20 C25 29.6480 39.8330 36.2750 C.2 1 041 -0.1031
|
| 33 |
+
21 H1 33.0577 38.1771 34.9722 H 1 041 0.0496
|
| 34 |
+
22 H2 33.4568 35.0468 37.9846 H 1 041 0.0472
|
| 35 |
+
23 H3 29.5187 35.2004 41.5086 H 1 041 0.0614
|
| 36 |
+
24 H4 27.5370 34.9828 43.0402 H 1 041 0.0551
|
| 37 |
+
25 H5 27.0148 37.0976 38.4758 H 1 041 0.0627
|
| 38 |
+
26 H6 34.8758 36.8954 35.2307 H 1 041 0.2449
|
| 39 |
+
27 H7 25.3465 35.3939 43.2706 H 1 041 0.2497
|
| 40 |
+
28 H8 30.6138 39.1290 34.5581 H 1 041 0.0604
|
| 41 |
+
29 H9 29.1026 40.5898 35.7131 H 1 041 0.0488
|
| 42 |
+
30 H10 29.5045 39.7450 37.3509 H 1 041 0.0488
|
| 43 |
+
@<TRIPOS>BOND
|
| 44 |
+
1 1 2 ar
|
| 45 |
+
2 1 6 ar
|
| 46 |
+
3 2 3 ar
|
| 47 |
+
4 2 19 1
|
| 48 |
+
5 3 4 ar
|
| 49 |
+
6 3 7 1
|
| 50 |
+
7 4 5 ar
|
| 51 |
+
8 4 9 1
|
| 52 |
+
9 5 6 ar
|
| 53 |
+
10 6 16 1
|
| 54 |
+
11 7 8 1
|
| 55 |
+
12 8 9 2
|
| 56 |
+
13 8 10 1
|
| 57 |
+
14 10 11 ar
|
| 58 |
+
15 10 15 ar
|
| 59 |
+
16 11 12 ar
|
| 60 |
+
17 12 13 ar
|
| 61 |
+
18 13 14 ar
|
| 62 |
+
19 13 18 1
|
| 63 |
+
20 14 15 ar
|
| 64 |
+
21 14 17 1
|
| 65 |
+
22 19 20 2
|
| 66 |
+
23 1 21 1
|
| 67 |
+
24 5 22 1
|
| 68 |
+
25 11 23 1
|
| 69 |
+
26 12 24 1
|
| 70 |
+
27 15 25 1
|
| 71 |
+
28 16 26 1
|
| 72 |
+
29 18 27 1
|
| 73 |
+
30 19 28 1
|
| 74 |
+
31 20 29 1
|
| 75 |
+
32 20 30 1
|
| 76 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 77 |
+
1 041 1
|
| 78 |
+
|
1x7b/1x7b_ligand.sdf
ADDED
|
@@ -0,0 +1,68 @@
|
|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1x7b_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
30 32 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
32.6400 37.6170 35.8010 C 0 0 0 0 0
|
| 6 |
+
31.3210 37.9160 36.2740 C 0 0 0 0 0
|
| 7 |
+
30.8000 37.1700 37.3600 C 0 0 0 0 0
|
| 8 |
+
31.5580 36.1150 38.0040 C 0 0 0 0 0
|
| 9 |
+
32.8680 35.8300 37.5210 C 0 0 0 0 0
|
| 10 |
+
33.4090 36.5770 36.4230 C 0 0 0 0 0
|
| 11 |
+
29.6100 37.2450 37.9950 O 0 0 0 0 0
|
| 12 |
+
29.5810 36.3170 38.9840 C 0 0 0 0 0
|
| 13 |
+
30.7540 35.6090 39.0150 N 0 0 0 0 0
|
| 14 |
+
28.4060 36.1630 39.8870 C 0 0 0 0 0
|
| 15 |
+
28.5480 35.5620 41.1890 C 0 0 0 0 0
|
| 16 |
+
27.4280 35.4370 42.0620 C 0 0 0 0 0
|
| 17 |
+
26.1530 35.9250 41.6190 C 0 0 0 0 0
|
| 18 |
+
26.0230 36.5210 40.3230 C 0 0 0 0 0
|
| 19 |
+
27.1300 36.6450 39.4540 C 0 0 0 0 0
|
| 20 |
+
34.6790 36.3130 35.9550 O 0 0 0 0 0
|
| 21 |
+
24.8090 36.9640 39.9610 F 0 0 0 0 0
|
| 22 |
+
25.0730 35.8110 42.4620 O 0 0 0 0 0
|
| 23 |
+
30.5070 38.9990 35.6340 C 0 0 0 0 0
|
| 24 |
+
29.6480 39.8330 36.2750 C 0 0 0 0 0
|
| 25 |
+
33.0600 38.1802 34.9676 H 0 0 0 0 0
|
| 26 |
+
33.4601 35.0425 37.9872 H 0 0 0 0 0
|
| 27 |
+
29.5240 35.1984 41.5104 H 0 0 0 0 0
|
| 28 |
+
27.5376 34.9803 43.0456 H 0 0 0 0 0
|
| 29 |
+
27.0141 37.1001 38.4704 H 0 0 0 0 0
|
| 30 |
+
35.0649 35.5978 36.4660 H 0 0 0 0 0
|
| 31 |
+
24.2950 36.1767 42.0347 H 0 0 0 0 0
|
| 32 |
+
30.6139 39.1292 34.5571 H 0 0 0 0 0
|
| 33 |
+
29.5044 39.7449 37.3519 H 0 0 0 0 0
|
| 34 |
+
29.1021 40.5905 35.7126 H 0 0 0 0 0
|
| 35 |
+
1 2 4 0 0 0
|
| 36 |
+
1 6 4 0 0 0
|
| 37 |
+
2 3 4 0 0 0
|
| 38 |
+
2 19 1 0 0 0
|
| 39 |
+
3 4 4 0 0 0
|
| 40 |
+
3 7 4 0 0 0
|
| 41 |
+
4 5 4 0 0 0
|
| 42 |
+
4 9 4 0 0 0
|
| 43 |
+
5 6 4 0 0 0
|
| 44 |
+
6 16 1 0 0 0
|
| 45 |
+
7 8 4 0 0 0
|
| 46 |
+
8 9 4 0 0 0
|
| 47 |
+
8 10 1 0 0 0
|
| 48 |
+
10 11 4 0 0 0
|
| 49 |
+
10 15 4 0 0 0
|
| 50 |
+
11 12 4 0 0 0
|
| 51 |
+
12 13 4 0 0 0
|
| 52 |
+
13 14 4 0 0 0
|
| 53 |
+
13 18 1 0 0 0
|
| 54 |
+
14 15 4 0 0 0
|
| 55 |
+
14 17 1 0 0 0
|
| 56 |
+
19 20 2 0 0 0
|
| 57 |
+
1 21 1 0 0 0
|
| 58 |
+
5 22 1 0 0 0
|
| 59 |
+
11 23 1 0 0 0
|
| 60 |
+
12 24 1 0 0 0
|
| 61 |
+
15 25 1 0 0 0
|
| 62 |
+
16 26 1 0 0 0
|
| 63 |
+
18 27 1 0 0 0
|
| 64 |
+
19 28 1 0 0 0
|
| 65 |
+
20 29 1 0 0 0
|
| 66 |
+
20 30 1 0 0 0
|
| 67 |
+
M END
|
| 68 |
+
$$$$
|
1x7b/1x7b_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1x7b/1x7b_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1xff/1xff_ligand.mol2
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:51 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1xff_ligand
|
| 7 |
+
18 17 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 6.4050 30.7060 29.8130 N.4 1 GLU 0.2328
|
| 14 |
+
2 CA 5.5520 30.4970 28.5940 C.3 1 GLU 0.0298
|
| 15 |
+
3 C 4.9540 29.1030 28.5460 C.2 1 GLU 0.0845
|
| 16 |
+
4 O 4.0110 28.8530 27.7710 O.co2 1 GLU -0.5643
|
| 17 |
+
5 CB 6.3450 30.7490 27.3220 C.3 1 GLU 0.0139
|
| 18 |
+
6 CG 7.5250 29.8070 27.0560 C.3 1 GLU 0.0069
|
| 19 |
+
7 CD 8.1800 30.1280 25.7280 C.2 1 GLU 0.0351
|
| 20 |
+
8 OE1 8.8920 31.1610 25.6620 O.co2 1 GLU -0.5690
|
| 21 |
+
9 OE2 8.0170 29.3580 24.7530 O.co2 1 GLU -0.5690
|
| 22 |
+
10 OXT 5.4220 28.2370 29.3110 O.co2 1 GLU -0.5643
|
| 23 |
+
11 H1 6.7804 31.6415 29.8040 H 1 GLU 0.2010
|
| 24 |
+
12 H2 7.1619 30.0403 29.8117 H 1 GLU 0.2010
|
| 25 |
+
13 H3 5.8451 30.5766 30.6411 H 1 GLU 0.2010
|
| 26 |
+
14 H4 4.7256 31.2218 28.6349 H 1 GLU 0.1025
|
| 27 |
+
15 H5 6.7401 31.7744 27.3716 H 1 GLU 0.0356
|
| 28 |
+
16 H6 5.6511 30.6641 26.4727 H 1 GLU 0.0356
|
| 29 |
+
17 H7 7.1610 28.7692 27.0371 H 1 GLU 0.0433
|
| 30 |
+
18 H8 8.2662 29.9211 27.8607 H 1 GLU 0.0433
|
| 31 |
+
@<TRIPOS>BOND
|
| 32 |
+
1 1 2 1
|
| 33 |
+
2 2 3 1
|
| 34 |
+
3 2 5 1
|
| 35 |
+
4 3 4 ar
|
| 36 |
+
5 3 10 ar
|
| 37 |
+
6 5 6 1
|
| 38 |
+
7 6 7 1
|
| 39 |
+
8 7 8 ar
|
| 40 |
+
9 7 9 ar
|
| 41 |
+
10 1 11 1
|
| 42 |
+
11 1 12 1
|
| 43 |
+
12 1 13 1
|
| 44 |
+
13 2 14 1
|
| 45 |
+
14 5 15 1
|
| 46 |
+
15 5 16 1
|
| 47 |
+
16 6 17 1
|
| 48 |
+
17 6 18 1
|
| 49 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 50 |
+
1 GLU 1
|
| 51 |
+
|
1xff/1xff_ligand.sdf
ADDED
|
@@ -0,0 +1,45 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1xff_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
20 19 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
6.4050 30.7060 29.8130 N 0 3 0 0 0
|
| 6 |
+
5.5520 30.4970 28.5940 C 0 0 0 0 0
|
| 7 |
+
4.9540 29.1030 28.5460 C 0 0 0 0 0
|
| 8 |
+
4.0110 28.8530 27.7710 O 0 0 0 0 0
|
| 9 |
+
6.3450 30.7490 27.3220 C 0 0 0 0 0
|
| 10 |
+
7.5250 29.8070 27.0560 C 0 0 0 0 0
|
| 11 |
+
8.1800 30.1280 25.7280 C 0 0 0 0 0
|
| 12 |
+
8.8920 31.1610 25.6620 O 0 0 0 0 0
|
| 13 |
+
8.0170 29.3580 24.7530 O 0 0 0 0 0
|
| 14 |
+
5.4220 28.2370 29.3110 O 0 0 0 0 0
|
| 15 |
+
5.8488 30.5306 30.6498 H 0 0 0 0 0
|
| 16 |
+
7.1957 30.0621 29.7877 H 0 0 0 0 0
|
| 17 |
+
6.7476 31.6667 29.8262 H 0 0 0 0 0
|
| 18 |
+
4.7362 31.2168 28.6610 H 0 0 0 0 0
|
| 19 |
+
6.7715 31.7469 27.4241 H 0 0 0 0 0
|
| 20 |
+
5.6482 30.6016 26.4969 H 0 0 0 0 0
|
| 21 |
+
7.1569 28.7814 27.0278 H 0 0 0 0 0
|
| 22 |
+
8.2608 29.9319 27.8504 H 0 0 0 0 0
|
| 23 |
+
8.8848 31.6080 26.5115 H 0 0 0 0 0
|
| 24 |
+
6.1373 28.6186 29.8251 H 0 0 0 0 0
|
| 25 |
+
1 2 1 0 0 0
|
| 26 |
+
2 3 1 0 0 0
|
| 27 |
+
2 5 1 0 0 0
|
| 28 |
+
3 4 2 0 0 0
|
| 29 |
+
3 10 1 0 0 0
|
| 30 |
+
5 6 1 0 0 0
|
| 31 |
+
6 7 1 0 0 0
|
| 32 |
+
7 8 1 0 0 0
|
| 33 |
+
7 9 2 0 0 0
|
| 34 |
+
1 11 1 0 0 0
|
| 35 |
+
1 12 1 0 0 0
|
| 36 |
+
1 13 1 0 0 0
|
| 37 |
+
2 14 1 0 0 0
|
| 38 |
+
5 15 1 0 0 0
|
| 39 |
+
5 16 1 0 0 0
|
| 40 |
+
6 17 1 0 0 0
|
| 41 |
+
6 18 1 0 0 0
|
| 42 |
+
8 19 1 0 0 0
|
| 43 |
+
10 20 1 0 0 0
|
| 44 |
+
M END
|
| 45 |
+
$$$$
|
1xff/1xff_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1xff/1xff_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1y1m/1y1m_ligand.mol2
ADDED
|
@@ -0,0 +1,56 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1y1m_ligand
|
| 7 |
+
20 20 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 1.5890 -4.3680 0.4860 N.4 1 AC5 0.2229
|
| 14 |
+
2 O 0.5990 -6.6920 1.1810 O.co2 1 AC5 -0.5422
|
| 15 |
+
3 CA 1.9010 -4.7880 1.8810 C.3 1 AC5 0.0324
|
| 16 |
+
4 C 1.3980 -6.2420 2.0740 C.2 1 AC5 0.0960
|
| 17 |
+
5 CB1 3.4030 -4.6300 2.1750 C.3 1 AC5 -0.0017
|
| 18 |
+
6 CB2 1.1950 -3.8660 2.8930 C.3 1 AC5 -0.0017
|
| 19 |
+
7 OXT 1.7540 -6.9110 3.0480 O.co2 1 AC5 -0.5422
|
| 20 |
+
8 CG1 3.5140 -3.5170 3.1850 C.3 1 AC5 -0.0480
|
| 21 |
+
9 CG2 2.2020 -2.7670 3.1550 C.3 1 AC5 -0.0480
|
| 22 |
+
10 H1 1.9088 -3.4233 0.3401 H 1 AC5 0.1999
|
| 23 |
+
11 H2 0.5932 -4.4124 0.3365 H 1 AC5 0.1999
|
| 24 |
+
12 H3 2.0540 -4.9840 -0.1623 H 1 AC5 0.1999
|
| 25 |
+
13 H4 3.9468 -4.3673 1.2556 H 1 AC5 0.0316
|
| 26 |
+
14 H5 3.8117 -5.5636 2.5888 H 1 AC5 0.0316
|
| 27 |
+
15 H6 0.9607 -4.4101 3.8198 H 1 AC5 0.0316
|
| 28 |
+
16 H7 0.2690 -3.4536 2.4658 H 1 AC5 0.0316
|
| 29 |
+
17 H8 4.3413 -2.8435 2.9168 H 1 AC5 0.0266
|
| 30 |
+
18 H9 3.6898 -3.9323 4.1883 H 1 AC5 0.0266
|
| 31 |
+
19 H10 2.0066 -2.2714 4.1174 H 1 AC5 0.0266
|
| 32 |
+
20 H11 2.1913 -2.0190 2.3485 H 1 AC5 0.0266
|
| 33 |
+
@<TRIPOS>BOND
|
| 34 |
+
1 3 1 1
|
| 35 |
+
2 4 2 ar
|
| 36 |
+
3 3 4 1
|
| 37 |
+
4 3 5 1
|
| 38 |
+
5 3 6 1
|
| 39 |
+
6 4 7 ar
|
| 40 |
+
7 5 8 1
|
| 41 |
+
8 6 9 1
|
| 42 |
+
9 8 9 1
|
| 43 |
+
10 1 10 1
|
| 44 |
+
11 1 11 1
|
| 45 |
+
12 1 12 1
|
| 46 |
+
13 5 13 1
|
| 47 |
+
14 5 14 1
|
| 48 |
+
15 6 15 1
|
| 49 |
+
16 6 16 1
|
| 50 |
+
17 8 17 1
|
| 51 |
+
18 8 18 1
|
| 52 |
+
19 9 19 1
|
| 53 |
+
20 9 20 1
|
| 54 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 55 |
+
1 AC5 1
|
| 56 |
+
|
1y1m/1y1m_ligand.sdf
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1y1m_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
21 21 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
1.5890 -4.3680 0.4860 N 0 3 0 0 0
|
| 6 |
+
0.5990 -6.6920 1.1810 O 0 0 0 0 0
|
| 7 |
+
1.9010 -4.7880 1.8810 C 0 0 0 0 0
|
| 8 |
+
1.3980 -6.2420 2.0740 C 0 0 0 0 0
|
| 9 |
+
3.4030 -4.6300 2.1750 C 0 0 0 0 0
|
| 10 |
+
1.1950 -3.8660 2.8930 C 0 0 0 0 0
|
| 11 |
+
1.7540 -6.9110 3.0480 O 0 0 0 0 0
|
| 12 |
+
3.5140 -3.5170 3.1850 C 0 0 0 0 0
|
| 13 |
+
2.2020 -2.7670 3.1550 C 0 0 0 0 0
|
| 14 |
+
2.0643 -4.9888 -0.1691 H 0 0 0 0 0
|
| 15 |
+
0.5816 -4.4185 0.3343 H 0 0 0 0 0
|
| 16 |
+
1.9083 -3.4102 0.3411 H 0 0 0 0 0
|
| 17 |
+
0.4523 -6.0165 0.5148 H 0 0 0 0 0
|
| 18 |
+
3.9604 -4.3968 1.2678 H 0 0 0 0 0
|
| 19 |
+
3.8294 -5.5563 2.5600 H 0 0 0 0 0
|
| 20 |
+
0.9135 -4.3932 3.8045 H 0 0 0 0 0
|
| 21 |
+
0.2516 -3.4779 2.5089 H 0 0 0 0 0
|
| 22 |
+
4.3446 -2.8545 2.9416 H 0 0 0 0 0
|
| 23 |
+
3.7098 -3.9154 4.1805 H 0 0 0 0 0
|
| 24 |
+
2.0040 -2.2205 4.0771 H 0 0 0 0 0
|
| 25 |
+
2.1792 -1.9812 2.4000 H 0 0 0 0 0
|
| 26 |
+
3 1 1 0 0 0
|
| 27 |
+
4 2 1 0 0 0
|
| 28 |
+
3 4 1 0 0 0
|
| 29 |
+
3 5 1 0 0 0
|
| 30 |
+
3 6 1 0 0 0
|
| 31 |
+
4 7 2 0 0 0
|
| 32 |
+
5 8 1 0 0 0
|
| 33 |
+
6 9 1 0 0 0
|
| 34 |
+
8 9 1 0 0 0
|
| 35 |
+
1 10 1 0 0 0
|
| 36 |
+
1 11 1 0 0 0
|
| 37 |
+
1 12 1 0 0 0
|
| 38 |
+
2 13 1 0 0 0
|
| 39 |
+
5 14 1 0 0 0
|
| 40 |
+
5 15 1 0 0 0
|
| 41 |
+
6 16 1 0 0 0
|
| 42 |
+
6 17 1 0 0 0
|
| 43 |
+
8 18 1 0 0 0
|
| 44 |
+
8 19 1 0 0 0
|
| 45 |
+
9 20 1 0 0 0
|
| 46 |
+
9 21 1 0 0 0
|
| 47 |
+
M END
|
| 48 |
+
$$$$
|
1y1m/1y1m_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1y1m/1y1m_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1zp5/1zp5_ligand.mol2
ADDED
|
@@ -0,0 +1,97 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1zp5_ligand
|
| 7 |
+
40 41 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 -2.9740 22.8540 8.2950 C.ar 1 2NI -0.0594
|
| 14 |
+
2 C2 -3.3910 23.2990 9.5870 C.ar 1 2NI -0.0296
|
| 15 |
+
3 C3 -2.6530 22.9260 10.7680 C.ar 1 2NI 0.0946
|
| 16 |
+
4 C4 -1.4870 22.0970 10.6060 C.ar 1 2NI -0.0296
|
| 17 |
+
5 C5 -1.0710 21.6490 9.3090 C.ar 1 2NI -0.0594
|
| 18 |
+
6 C6 -1.8140 22.0220 8.1290 C.ar 1 2NI -0.0225
|
| 19 |
+
7 C7 -1.3910 21.5410 6.7540 C.ar 1 2NI -0.0167
|
| 20 |
+
8 C8 -0.3690 20.5280 6.6060 C.ar 1 2NI -0.0463
|
| 21 |
+
9 C9 0.0180 20.0600 5.3090 C.ar 1 2NI -0.0291
|
| 22 |
+
10 C10 -0.6100 20.5980 4.1370 C.ar 1 2NI 0.0926
|
| 23 |
+
11 C11 -1.6180 21.6040 4.2600 C.ar 1 2NI -0.0291
|
| 24 |
+
12 C12 -2.0070 22.0720 5.5520 C.ar 1 2NI -0.0463
|
| 25 |
+
13 C13 -0.2160 20.1060 2.8140 C.1 1 2NI 0.0969
|
| 26 |
+
14 N1 0.0740 19.6960 1.7790 N.1 1 2NI -0.3314
|
| 27 |
+
15 O1 -3.0860 23.3680 12.0860 O.3 1 2NI -0.3138
|
| 28 |
+
16 C14 -3.7560 24.6570 12.1150 C.3 1 2NI 0.0913
|
| 29 |
+
17 C15 -2.8750 25.8140 12.5920 C.3 1 2NI 0.0617
|
| 30 |
+
18 N2 -3.4620 27.1780 12.1430 N.am 1 2NI -0.2587
|
| 31 |
+
19 C16 -3.9890 27.8210 13.3900 C.3 1 2NI 0.0229
|
| 32 |
+
20 C17 -2.3340 27.9090 11.5260 C.2 1 2NI 0.2835
|
| 33 |
+
21 O2 -2.4710 29.1400 11.3990 O.2 1 2NI -0.4008
|
| 34 |
+
22 N3 -1.1370 27.2530 11.0780 N.am 1 2NI -0.1503
|
| 35 |
+
23 O3 -1.1470 26.1930 10.0580 O.3 1 2NI -0.2719
|
| 36 |
+
24 H1 -3.5443 23.1500 7.4220 H 1 2NI 0.0613
|
| 37 |
+
25 H2 -4.2718 23.9239 9.6803 H 1 2NI 0.0552
|
| 38 |
+
26 H3 -0.9140 21.8067 11.4792 H 1 2NI 0.0552
|
| 39 |
+
27 H4 -0.1902 21.0243 9.2137 H 1 2NI 0.0613
|
| 40 |
+
28 H5 0.1099 20.1180 7.4878 H 1 2NI 0.0629
|
| 41 |
+
29 H6 0.7848 19.2999 5.2131 H 1 2NI 0.0710
|
| 42 |
+
30 H7 -2.0874 22.0119 3.3721 H 1 2NI 0.0710
|
| 43 |
+
31 H8 -2.7730 22.8344 5.6360 H 1 2NI 0.0629
|
| 44 |
+
32 H9 -4.6204 24.5809 12.7910 H 1 2NI 0.0636
|
| 45 |
+
33 H10 -4.1052 24.8867 11.0975 H 1 2NI 0.0636
|
| 46 |
+
34 H11 -1.8671 25.6982 12.1670 H 1 2NI 0.0546
|
| 47 |
+
35 H12 -2.8147 25.7918 13.6901 H 1 2NI 0.0546
|
| 48 |
+
36 H13 -4.4234 28.8007 13.1419 H 1 2NI 0.0483
|
| 49 |
+
37 H14 -3.1671 27.9557 14.1086 H 1 2NI 0.0483
|
| 50 |
+
38 H15 -4.7633 27.1786 13.8347 H 1 2NI 0.0483
|
| 51 |
+
39 H16 -0.2616 27.5280 11.4756 H 1 2NI 0.2209
|
| 52 |
+
40 H17 -0.2584 25.8934 9.9055 H 1 2NI 0.2486
|
| 53 |
+
@<TRIPOS>BOND
|
| 54 |
+
1 1 2 ar
|
| 55 |
+
2 1 6 ar
|
| 56 |
+
3 2 3 ar
|
| 57 |
+
4 3 4 ar
|
| 58 |
+
5 3 15 1
|
| 59 |
+
6 4 5 ar
|
| 60 |
+
7 5 6 ar
|
| 61 |
+
8 6 7 1
|
| 62 |
+
9 7 8 ar
|
| 63 |
+
10 7 12 ar
|
| 64 |
+
11 8 9 ar
|
| 65 |
+
12 9 10 ar
|
| 66 |
+
13 10 11 ar
|
| 67 |
+
14 10 13 1
|
| 68 |
+
15 11 12 ar
|
| 69 |
+
16 13 14 3
|
| 70 |
+
17 15 16 1
|
| 71 |
+
18 16 17 1
|
| 72 |
+
19 17 18 1
|
| 73 |
+
20 18 19 1
|
| 74 |
+
21 18 20 am
|
| 75 |
+
22 20 21 2
|
| 76 |
+
23 20 22 am
|
| 77 |
+
24 22 23 1
|
| 78 |
+
25 1 24 1
|
| 79 |
+
26 2 25 1
|
| 80 |
+
27 4 26 1
|
| 81 |
+
28 5 27 1
|
| 82 |
+
29 8 28 1
|
| 83 |
+
30 9 29 1
|
| 84 |
+
31 11 30 1
|
| 85 |
+
32 12 31 1
|
| 86 |
+
33 16 32 1
|
| 87 |
+
34 16 33 1
|
| 88 |
+
35 17 34 1
|
| 89 |
+
36 17 35 1
|
| 90 |
+
37 19 36 1
|
| 91 |
+
38 19 37 1
|
| 92 |
+
39 19 38 1
|
| 93 |
+
40 22 39 1
|
| 94 |
+
41 23 40 1
|
| 95 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 96 |
+
1 2NI 1
|
| 97 |
+
|
1zp5/1zp5_ligand.sdf
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
1zp5_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
40 41 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-2.9740 22.8540 8.2950 C 0 0 0 0 0
|
| 6 |
+
-3.3910 23.2990 9.5870 C 0 0 0 0 0
|
| 7 |
+
-2.6530 22.9260 10.7680 C 0 0 0 0 0
|
| 8 |
+
-1.4870 22.0970 10.6060 C 0 0 0 0 0
|
| 9 |
+
-1.0710 21.6490 9.3090 C 0 0 0 0 0
|
| 10 |
+
-1.8140 22.0220 8.1290 C 0 0 0 0 0
|
| 11 |
+
-1.3910 21.5410 6.7540 C 0 0 0 0 0
|
| 12 |
+
-0.3690 20.5280 6.6060 C 0 0 0 0 0
|
| 13 |
+
0.0180 20.0600 5.3090 C 0 0 0 0 0
|
| 14 |
+
-0.6100 20.5980 4.1370 C 0 0 0 0 0
|
| 15 |
+
-1.6180 21.6040 4.2600 C 0 0 0 0 0
|
| 16 |
+
-2.0070 22.0720 5.5520 C 0 0 0 0 0
|
| 17 |
+
-0.2160 20.1060 2.8140 C 0 0 0 0 0
|
| 18 |
+
0.0740 19.6960 1.7790 N 0 0 0 0 0
|
| 19 |
+
-3.0860 23.3680 12.0860 O 0 0 0 0 0
|
| 20 |
+
-3.7560 24.6570 12.1150 C 0 0 0 0 0
|
| 21 |
+
-2.8750 25.8140 12.5920 C 0 0 0 0 0
|
| 22 |
+
-3.4620 27.1780 12.1430 N 0 0 0 0 0
|
| 23 |
+
-3.9890 27.8210 13.3900 C 0 0 0 0 0
|
| 24 |
+
-2.3340 27.9090 11.5260 C 0 0 0 0 0
|
| 25 |
+
-2.4710 29.1400 11.3990 O 0 0 0 0 0
|
| 26 |
+
-1.1370 27.2530 11.0780 N 0 0 0 0 0
|
| 27 |
+
-1.1470 26.1930 10.0580 O 0 0 0 0 0
|
| 28 |
+
-3.5475 23.1516 7.4171 H 0 0 0 0 0
|
| 29 |
+
-4.2767 23.9273 9.6808 H 0 0 0 0 0
|
| 30 |
+
-0.9109 21.8051 11.4840 H 0 0 0 0 0
|
| 31 |
+
-0.1854 21.0209 9.2132 H 0 0 0 0 0
|
| 32 |
+
0.1126 20.1157 7.4927 H 0 0 0 0 0
|
| 33 |
+
0.7891 19.2957 5.2126 H 0 0 0 0 0
|
| 34 |
+
-2.0900 22.0142 3.3672 H 0 0 0 0 0
|
| 35 |
+
-2.7772 22.8386 5.6365 H 0 0 0 0 0
|
| 36 |
+
-4.5836 24.5725 12.8193 H 0 0 0 0 0
|
| 37 |
+
-4.0584 24.8844 11.0928 H 0 0 0 0 0
|
| 38 |
+
-1.8815 25.7000 12.1584 H 0 0 0 0 0
|
| 39 |
+
-2.8286 25.7936 13.6808 H 0 0 0 0 0
|
| 40 |
+
-4.7561 27.1835 13.8297 H 0 0 0 0 0
|
| 41 |
+
-3.1737 27.9539 14.1012 H 0 0 0 0 0
|
| 42 |
+
-4.4191 28.7916 13.1429 H 0 0 0 0 0
|
| 43 |
+
-0.2441 27.5335 11.4835 H 0 0 0 0 0
|
| 44 |
+
-0.2491 25.8903 9.9039 H 0 0 0 0 0
|
| 45 |
+
1 2 4 0 0 0
|
| 46 |
+
1 6 4 0 0 0
|
| 47 |
+
2 3 4 0 0 0
|
| 48 |
+
3 4 4 0 0 0
|
| 49 |
+
3 15 1 0 0 0
|
| 50 |
+
4 5 4 0 0 0
|
| 51 |
+
5 6 4 0 0 0
|
| 52 |
+
6 7 1 0 0 0
|
| 53 |
+
7 8 4 0 0 0
|
| 54 |
+
7 12 4 0 0 0
|
| 55 |
+
8 9 4 0 0 0
|
| 56 |
+
9 10 4 0 0 0
|
| 57 |
+
10 11 4 0 0 0
|
| 58 |
+
10 13 1 0 0 0
|
| 59 |
+
11 12 4 0 0 0
|
| 60 |
+
13 14 3 0 0 0
|
| 61 |
+
15 16 1 0 0 0
|
| 62 |
+
16 17 1 0 0 0
|
| 63 |
+
17 18 1 0 0 0
|
| 64 |
+
18 19 1 0 0 0
|
| 65 |
+
18 20 1 0 0 0
|
| 66 |
+
20 21 2 0 0 0
|
| 67 |
+
20 22 1 0 0 0
|
| 68 |
+
22 23 1 0 0 0
|
| 69 |
+
1 24 1 0 0 0
|
| 70 |
+
2 25 1 0 0 0
|
| 71 |
+
4 26 1 0 0 0
|
| 72 |
+
5 27 1 0 0 0
|
| 73 |
+
8 28 1 0 0 0
|
| 74 |
+
9 29 1 0 0 0
|
| 75 |
+
11 30 1 0 0 0
|
| 76 |
+
12 31 1 0 0 0
|
| 77 |
+
16 32 1 0 0 0
|
| 78 |
+
16 33 1 0 0 0
|
| 79 |
+
17 34 1 0 0 0
|
| 80 |
+
17 35 1 0 0 0
|
| 81 |
+
19 36 1 0 0 0
|
| 82 |
+
19 37 1 0 0 0
|
| 83 |
+
19 38 1 0 0 0
|
| 84 |
+
22 39 1 0 0 0
|
| 85 |
+
23 40 1 0 0 0
|
| 86 |
+
M END
|
| 87 |
+
$$$$
|