Add batch 143
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1b55/1b55_ligand.mol2 +88 -0
- 1b55/1b55_ligand.sdf +94 -0
- 1b55/1b55_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1b55/1b55_protein_processed_fix.pdb +0 -0
- 1elc/1elc_ligand.mol2 +157 -0
- 1elc/1elc_ligand.sdf +147 -0
- 1elc/1elc_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1elc/1elc_protein_processed_fix.pdb +0 -0
- 1fvv/1fvv_ligand.mol2 +112 -0
- 1fvv/1fvv_ligand.sdf +102 -0
- 1fvv/1fvv_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1fvv/1fvv_protein_processed_fix.pdb +0 -0
- 1fwe/1fwe_ligand.mol2 +35 -0
- 1fwe/1fwe_ligand.sdf +25 -0
- 1fwe/1fwe_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1fwe/1fwe_protein_processed_fix.pdb +0 -0
- 1gni/1gni_ligand.mol2 +121 -0
- 1gni/1gni_ligand.sdf +113 -0
- 1gni/1gni_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1gni/1gni_protein_processed_fix.pdb +0 -0
- 1k1j/1k1j_ligand.mol2 +155 -0
- 1k1j/1k1j_ligand.sdf +143 -0
- 1k1j/1k1j_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1k1j/1k1j_protein_processed_fix.pdb +0 -0
- 1r6n/1r6n_ligand.mol2 +139 -0
- 1r6n/1r6n_ligand.sdf +131 -0
- 1r6n/1r6n_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1r6n/1r6n_protein_processed_fix.pdb +0 -0
- 1rst/1rst_ligand.mol2 +306 -0
- 1rst/1rst_ligand.sdf +292 -0
- 1rst/1rst_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1rst/1rst_protein_processed_fix.pdb +0 -0
- 1u71/1u71_ligand.mol2 +104 -0
- 1u71/1u71_ligand.sdf +94 -0
- 1u71/1u71_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1u71/1u71_protein_processed_fix.pdb +0 -0
- 1yyy/1yyy_ligand.mol2 +135 -0
- 1yyy/1yyy_ligand.sdf +121 -0
- 1yyy/1yyy_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1yyy/1yyy_protein_processed_fix.pdb +0 -0
- 2ael/2ael_ligand.mol2 +98 -0
- 2ael/2ael_ligand.sdf +88 -0
- 2ael/2ael_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2ael/2ael_protein_processed_fix.pdb +0 -0
- 2boi/2boi_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2boi/2boi_protein_processed_fix.pdb +0 -0
- 2ohk/2ohk_ligand.mol2 +55 -0
- 2ohk/2ohk_ligand.sdf +45 -0
- 2ohk/2ohk_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2ohk/2ohk_protein_processed_fix.pdb +0 -0
1b55/1b55_ligand.mol2
ADDED
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@@ -0,0 +1,88 @@
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| 1 |
+
###
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+
### Created by X-TOOL on Mon Sep 10 21:12:47 2018
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###
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@<TRIPOS>MOLECULE
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| 6 |
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1b55_ligand
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| 7 |
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36 36 1 0 0
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| 8 |
+
SMALL
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| 9 |
+
GAST_HUCK
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| 10 |
+
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| 11 |
+
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| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 -1.9790 4.5500 38.7310 C.3 1 4IP 0.1463
|
| 14 |
+
2 O1 -3.3050 4.6200 39.4460 O.3 1 4IP -0.2675
|
| 15 |
+
3 C2 -0.8500 5.4250 39.1840 C.3 1 4IP 0.1215
|
| 16 |
+
4 O2 -1.0420 6.8380 38.8990 O.3 1 4IP -0.3858
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| 17 |
+
5 C3 0.3240 4.8690 38.4730 C.3 1 4IP 0.1509
|
| 18 |
+
6 O3 1.5010 5.4200 39.0040 O.3 1 4IP -0.2672
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| 19 |
+
7 C4 0.1820 5.0170 36.9230 C.3 1 4IP 0.1550
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| 20 |
+
8 O4 1.3610 4.5130 36.3190 O.3 1 4IP -0.2669
|
| 21 |
+
9 C5 -0.9050 4.1360 36.4760 C.3 1 4IP 0.1509
|
| 22 |
+
10 O5 -1.1120 4.3720 35.0380 O.3 1 4IP -0.2672
|
| 23 |
+
11 C6 -2.1860 4.5000 37.2100 C.3 1 4IP 0.1215
|
| 24 |
+
12 O6 -3.0420 3.4270 36.9930 O.3 1 4IP -0.3858
|
| 25 |
+
13 P1 -3.8130 3.6270 40.6700 P.3 1 4IP 0.2013
|
| 26 |
+
14 OP1 -4.9810 4.2240 41.3230 O.co2 1 4IP -0.5537
|
| 27 |
+
15 OP2 -2.6980 3.4600 41.6390 O.co2 1 4IP -0.5537
|
| 28 |
+
16 OP3 -4.0120 2.4480 39.7660 O.co2 1 4IP -0.5537
|
| 29 |
+
17 P3 2.6050 4.5510 39.6380 P.3 1 4IP 0.2013
|
| 30 |
+
18 O10 3.4630 5.5730 40.0730 O.co2 1 4IP -0.5537
|
| 31 |
+
19 O11 1.8060 3.7860 40.5730 O.co2 1 4IP -0.5537
|
| 32 |
+
20 O12 3.0900 3.7480 38.5600 O.co2 1 4IP -0.5537
|
| 33 |
+
21 P4 2.3810 5.3220 35.5530 P.3 1 4IP 0.2013
|
| 34 |
+
22 OP4 1.8910 6.7140 35.6780 O.co2 1 4IP -0.5537
|
| 35 |
+
23 OP5 3.6580 5.0400 36.2540 O.co2 1 4IP -0.5537
|
| 36 |
+
24 OP6 2.2820 4.7790 34.2290 O.co2 1 4IP -0.5537
|
| 37 |
+
25 P5 -0.7220 3.4620 33.7510 P.3 1 4IP 0.2013
|
| 38 |
+
26 OP7 0.3140 4.2970 33.1410 O.co2 1 4IP -0.5537
|
| 39 |
+
27 OP8 -0.3560 2.1590 34.2350 O.co2 1 4IP -0.5537
|
| 40 |
+
28 OP9 -1.9840 3.4660 33.0630 O.co2 1 4IP -0.5537
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| 41 |
+
29 H1 -1.6123 3.5441 38.9834 H 1 4IP 0.0703
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| 42 |
+
30 H2 -0.7155 5.3165 40.2703 H 1 4IP 0.0654
|
| 43 |
+
31 H3 -1.8022 7.1549 39.3724 H 1 4IP 0.2100
|
| 44 |
+
32 H4 0.3547 3.7894 38.6818 H 1 4IP 0.0706
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| 45 |
+
33 H5 -0.0024 6.0638 36.6399 H 1 4IP 0.0710
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| 46 |
+
34 H6 -0.6456 3.0833 36.6618 H 1 4IP 0.0706
|
| 47 |
+
35 H7 -2.5994 5.4486 36.8369 H 1 4IP 0.0654
|
| 48 |
+
36 H8 -3.1889 3.3242 36.0601 H 1 4IP 0.2100
|
| 49 |
+
@<TRIPOS>BOND
|
| 50 |
+
1 1 11 1
|
| 51 |
+
2 1 3 1
|
| 52 |
+
3 1 2 1
|
| 53 |
+
4 2 13 1
|
| 54 |
+
5 13 16 ar
|
| 55 |
+
6 13 15 ar
|
| 56 |
+
7 13 14 ar
|
| 57 |
+
8 3 5 1
|
| 58 |
+
9 3 4 1
|
| 59 |
+
10 5 7 1
|
| 60 |
+
11 5 6 1
|
| 61 |
+
12 6 17 1
|
| 62 |
+
13 17 20 ar
|
| 63 |
+
14 17 19 ar
|
| 64 |
+
15 17 18 ar
|
| 65 |
+
16 7 9 1
|
| 66 |
+
17 7 8 1
|
| 67 |
+
18 8 21 1
|
| 68 |
+
19 21 24 ar
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| 69 |
+
20 21 23 ar
|
| 70 |
+
21 21 22 ar
|
| 71 |
+
22 9 11 1
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| 72 |
+
23 9 10 1
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| 73 |
+
24 10 25 1
|
| 74 |
+
25 25 28 ar
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| 75 |
+
26 25 27 ar
|
| 76 |
+
27 25 26 ar
|
| 77 |
+
28 11 12 1
|
| 78 |
+
29 1 29 1
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| 79 |
+
30 3 30 1
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| 80 |
+
31 4 31 1
|
| 81 |
+
32 5 32 1
|
| 82 |
+
33 7 33 1
|
| 83 |
+
34 9 34 1
|
| 84 |
+
35 11 35 1
|
| 85 |
+
36 12 36 1
|
| 86 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 87 |
+
1 4IP 1
|
| 88 |
+
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1b55/1b55_ligand.sdf
ADDED
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@@ -0,0 +1,94 @@
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| 1 |
+
1b55_ligand
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| 2 |
+
-I-interpret-
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| 3 |
+
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| 4 |
+
44 44 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-1.9790 4.5500 38.7310 C 0 0 0 0 0
|
| 6 |
+
-3.3050 4.6200 39.4460 O 0 0 0 0 0
|
| 7 |
+
-0.8500 5.4250 39.1840 C 0 0 0 0 0
|
| 8 |
+
-1.0420 6.8380 38.8990 O 0 0 0 0 0
|
| 9 |
+
0.3240 4.8690 38.4730 C 0 0 0 0 0
|
| 10 |
+
1.5010 5.4200 39.0040 O 0 0 0 0 0
|
| 11 |
+
0.1820 5.0170 36.9230 C 0 0 0 0 0
|
| 12 |
+
1.3610 4.5130 36.3190 O 0 0 0 0 0
|
| 13 |
+
-0.9050 4.1360 36.4760 C 0 0 0 0 0
|
| 14 |
+
-1.1120 4.3720 35.0380 O 0 0 0 0 0
|
| 15 |
+
-2.1860 4.5000 37.2100 C 0 0 0 0 0
|
| 16 |
+
-3.0420 3.4270 36.9930 O 0 0 0 0 0
|
| 17 |
+
-3.8130 3.6270 40.6700 P 0 0 0 0 0
|
| 18 |
+
-4.9810 4.2240 41.3230 O 0 0 0 0 0
|
| 19 |
+
-2.6980 3.4600 41.6390 O 0 0 0 0 0
|
| 20 |
+
-4.0120 2.4480 39.7660 O 0 0 0 0 0
|
| 21 |
+
2.6050 4.5510 39.6380 P 0 0 0 0 0
|
| 22 |
+
3.4630 5.5730 40.0730 O 0 0 0 0 0
|
| 23 |
+
1.8060 3.7860 40.5730 O 0 0 0 0 0
|
| 24 |
+
3.0900 3.7480 38.5600 O 0 0 0 0 0
|
| 25 |
+
2.3810 5.3220 35.5530 P 0 0 0 0 0
|
| 26 |
+
1.8910 6.7140 35.6780 O 0 0 0 0 0
|
| 27 |
+
3.6580 5.0400 36.2540 O 0 0 0 0 0
|
| 28 |
+
2.2820 4.7790 34.2290 O 0 0 0 0 0
|
| 29 |
+
-0.7220 3.4620 33.7510 P 0 0 0 0 0
|
| 30 |
+
0.3140 4.2970 33.1410 O 0 0 0 0 0
|
| 31 |
+
-0.3560 2.1590 34.2350 O 0 0 0 0 0
|
| 32 |
+
-1.9840 3.4660 33.0630 O 0 0 0 0 0
|
| 33 |
+
-1.5651 3.6006 39.0708 H 0 0 0 0 0
|
| 34 |
+
-0.7472 5.4114 40.2691 H 0 0 0 0 0
|
| 35 |
+
-1.8102 7.1583 39.3774 H 0 0 0 0 0
|
| 36 |
+
0.3804 3.7932 38.6389 H 0 0 0 0 0
|
| 37 |
+
0.0006 6.0601 36.6638 H 0 0 0 0 0
|
| 38 |
+
-0.6517 3.0945 36.6740 H 0 0 0 0 0
|
| 39 |
+
-2.5436 5.4691 36.8621 H 0 0 0 0 0
|
| 40 |
+
-3.8787 3.5924 37.4336 H 0 0 0 0 0
|
| 41 |
+
-1.9437 3.0682 41.1927 H 0 0 0 0 0
|
| 42 |
+
-3.1634 2.1690 39.4143 H 0 0 0 0 0
|
| 43 |
+
1.2867 3.1372 40.0924 H 0 0 0 0 0
|
| 44 |
+
2.4346 3.0825 38.3382 H 0 0 0 0 0
|
| 45 |
+
1.9891 7.0061 36.5872 H 0 0 0 0 0
|
| 46 |
+
3.6371 5.4382 37.1273 H 0 0 0 0 0
|
| 47 |
+
1.1190 4.2368 33.6606 H 0 0 0 0 0
|
| 48 |
+
0.4907 2.2120 34.6844 H 0 0 0 0 0
|
| 49 |
+
1 11 1 0 0 0
|
| 50 |
+
1 3 1 0 0 0
|
| 51 |
+
1 2 1 0 0 0
|
| 52 |
+
2 13 1 0 0 0
|
| 53 |
+
13 16 1 0 0 0
|
| 54 |
+
13 15 1 0 0 0
|
| 55 |
+
13 14 2 0 0 0
|
| 56 |
+
3 5 1 0 0 0
|
| 57 |
+
3 4 1 0 0 0
|
| 58 |
+
5 7 1 0 0 0
|
| 59 |
+
5 6 1 0 0 0
|
| 60 |
+
6 17 1 0 0 0
|
| 61 |
+
17 20 1 0 0 0
|
| 62 |
+
17 19 1 0 0 0
|
| 63 |
+
17 18 2 0 0 0
|
| 64 |
+
7 9 1 0 0 0
|
| 65 |
+
7 8 1 0 0 0
|
| 66 |
+
8 21 1 0 0 0
|
| 67 |
+
21 24 2 0 0 0
|
| 68 |
+
21 23 1 0 0 0
|
| 69 |
+
21 22 1 0 0 0
|
| 70 |
+
9 11 1 0 0 0
|
| 71 |
+
9 10 1 0 0 0
|
| 72 |
+
10 25 1 0 0 0
|
| 73 |
+
25 28 2 0 0 0
|
| 74 |
+
25 27 1 0 0 0
|
| 75 |
+
25 26 1 0 0 0
|
| 76 |
+
11 12 1 0 0 0
|
| 77 |
+
1 29 1 0 0 0
|
| 78 |
+
3 30 1 0 0 0
|
| 79 |
+
4 31 1 0 0 0
|
| 80 |
+
5 32 1 0 0 0
|
| 81 |
+
7 33 1 0 0 0
|
| 82 |
+
9 34 1 0 0 0
|
| 83 |
+
11 35 1 0 0 0
|
| 84 |
+
12 36 1 0 0 0
|
| 85 |
+
15 37 1 0 0 0
|
| 86 |
+
16 38 1 0 0 0
|
| 87 |
+
19 39 1 0 0 0
|
| 88 |
+
20 40 1 0 0 0
|
| 89 |
+
22 41 1 0 0 0
|
| 90 |
+
23 42 1 0 0 0
|
| 91 |
+
26 43 1 0 0 0
|
| 92 |
+
27 44 1 0 0 0
|
| 93 |
+
M END
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| 94 |
+
$$$$
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1b55/1b55_protein_esmfold_aligned_tr_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1b55/1b55_protein_processed_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1elc/1elc_ligand.mol2
ADDED
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1elc_ligand
|
| 7 |
+
70 71 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C 42.8050 20.7570 36.2120 C.2 1 0Z3 0.3031
|
| 14 |
+
2 O 43.2220 19.6600 35.7850 O.2 1 0Z3 -0.3349
|
| 15 |
+
3 CT 43.3350 22.1690 35.5980 C.3 1 0Z3 0.4751
|
| 16 |
+
4 F1 44.5760 22.5880 35.9040 F 1 0Z3 -0.1699
|
| 17 |
+
5 F2 43.3400 22.1380 34.2310 F 1 0Z3 -0.1699
|
| 18 |
+
6 F3 42.5450 23.2360 35.9070 F 1 0Z3 -0.1699
|
| 19 |
+
7 N 41.9850 20.7120 37.3110 N.am 1 0Z3 -0.2576
|
| 20 |
+
8 CA 41.1470 19.5470 37.7390 C.3 1 0Z3 0.1313
|
| 21 |
+
9 C 39.9350 20.2470 38.3590 C.2 1 0Z3 0.2042
|
| 22 |
+
10 O 39.5500 20.1350 39.5140 O.2 1 0Z3 -0.3944
|
| 23 |
+
11 CB 41.6950 18.6340 38.8360 C.3 1 0Z3 -0.0121
|
| 24 |
+
12 CG 41.7310 17.1930 38.3090 C.3 1 0Z3 -0.0440
|
| 25 |
+
13 CD 42.0520 16.1940 39.4090 C.3 1 0Z3 -0.0124
|
| 26 |
+
14 CE 42.4190 14.8100 38.8540 C.3 1 0Z3 -0.0354
|
| 27 |
+
15 NZ 43.7640 14.7820 38.3030 N.4 1 0Z3 0.2185
|
| 28 |
+
16 N 39.2820 20.8490 37.3710 N.am 1 0Z3 -0.2614
|
| 29 |
+
17 CA 38.3090 21.8990 37.4870 C.3 1 0Z3 0.1458
|
| 30 |
+
18 C 36.8880 21.5760 36.9920 C.2 1 0Z3 0.2295
|
| 31 |
+
19 O 36.1860 20.7300 37.5860 O.2 1 0Z3 -0.3830
|
| 32 |
+
20 CB 39.0710 22.9630 36.7310 C.3 1 0Z3 0.0219
|
| 33 |
+
21 CG 39.5100 24.0670 37.6060 C.ar 1 0Z3 -0.0385
|
| 34 |
+
22 CD1 40.4130 23.8390 38.6290 C.ar 1 0Z3 -0.0601
|
| 35 |
+
23 CD2 38.9750 25.3110 37.3900 C.ar 1 0Z3 -0.0601
|
| 36 |
+
24 CE1 40.7890 24.8850 39.4520 C.ar 1 0Z3 -0.0686
|
| 37 |
+
25 CE2 39.3470 26.3550 38.2160 C.ar 1 0Z3 -0.0686
|
| 38 |
+
26 CZ 40.2460 26.1450 39.2320 C.ar 1 0Z3 -0.0687
|
| 39 |
+
27 N1 36.5460 22.4810 36.0050 N.am 1 0Z3 -0.2357
|
| 40 |
+
28 C1 35.5440 22.3810 35.1150 C.ar 1 0Z3 0.0597
|
| 41 |
+
29 C2 35.2290 21.1470 34.5420 C.ar 1 0Z3 -0.0473
|
| 42 |
+
30 C3 34.3760 21.0890 33.4530 C.ar 1 0Z3 -0.0730
|
| 43 |
+
31 C4 33.8090 22.2580 32.9150 C.ar 1 0Z3 -0.0550
|
| 44 |
+
32 C5 34.1070 23.5020 33.4970 C.ar 1 0Z3 -0.0730
|
| 45 |
+
33 C6 34.9690 23.5580 34.5920 C.ar 1 0Z3 -0.0473
|
| 46 |
+
34 C1' 32.9050 22.1250 31.6650 C.3 1 0Z3 -0.0199
|
| 47 |
+
35 C2' 33.7410 21.4370 30.5710 C.3 1 0Z3 -0.0548
|
| 48 |
+
36 C3' 32.3370 23.4620 31.2430 C.3 1 0Z3 -0.0548
|
| 49 |
+
37 H1 41.9430 21.5338 37.8793 H 1 0Z3 0.1891
|
| 50 |
+
38 H2 40.8789 18.9380 36.8631 H 1 0Z3 0.0802
|
| 51 |
+
39 H3 41.0439 18.6876 39.7210 H 1 0Z3 0.0313
|
| 52 |
+
40 H4 42.7117 18.9532 39.1088 H 1 0Z3 0.0313
|
| 53 |
+
41 H5 42.5008 17.1197 37.5267 H 1 0Z3 0.0269
|
| 54 |
+
42 H6 40.7483 16.9465 37.8807 H 1 0Z3 0.0269
|
| 55 |
+
43 H7 41.1718 16.0912 40.0607 H 1 0Z3 0.0317
|
| 56 |
+
44 H8 42.9004 16.5755 39.9961 H 1 0Z3 0.0317
|
| 57 |
+
45 H9 41.7048 14.5451 38.0604 H 1 0Z3 0.0813
|
| 58 |
+
46 H10 42.3534 14.0726 39.6675 H 1 0Z3 0.0813
|
| 59 |
+
47 H11 43.9637 13.8588 37.9510 H 1 0Z3 0.1994
|
| 60 |
+
48 H12 44.4276 15.0173 39.0243 H 1 0Z3 0.1994
|
| 61 |
+
49 H13 43.8333 15.4503 37.5516 H 1 0Z3 0.1994
|
| 62 |
+
50 H14 39.4910 20.5366 36.4443 H 1 0Z3 0.1885
|
| 63 |
+
51 H15 38.2052 22.1957 38.5411 H 1 0Z3 0.0828
|
| 64 |
+
52 H16 38.4201 23.3727 35.9446 H 1 0Z3 0.0474
|
| 65 |
+
53 H17 39.9577 22.5030 36.2704 H 1 0Z3 0.0474
|
| 66 |
+
54 H18 40.8229 22.8476 38.7844 H 1 0Z3 0.0557
|
| 67 |
+
55 H19 38.2701 25.4734 36.5826 H 1 0Z3 0.0557
|
| 68 |
+
56 H20 41.4970 24.7242 40.2570 H 1 0Z3 0.0599
|
| 69 |
+
57 H21 38.9276 27.3425 38.0610 H 1 0Z3 0.0599
|
| 70 |
+
58 H22 40.5357 26.9719 39.8702 H 1 0Z3 0.0559
|
| 71 |
+
59 H23 37.1091 23.3053 35.9463 H 1 0Z3 0.2235
|
| 72 |
+
60 H24 35.6518 20.2357 34.9493 H 1 0Z3 0.0487
|
| 73 |
+
61 H25 34.1418 20.1284 33.0086 H 1 0Z3 0.0520
|
| 74 |
+
62 H26 33.6705 24.4105 33.0981 H 1 0Z3 0.0520
|
| 75 |
+
63 H27 35.1993 24.5153 35.0455 H 1 0Z3 0.0487
|
| 76 |
+
64 H28 32.0561 21.4707 31.9126 H 1 0Z3 0.0428
|
| 77 |
+
65 H29 33.1324 21.3231 29.6618 H 1 0Z3 0.0251
|
| 78 |
+
66 H30 34.0622 20.4459 30.9238 H 1 0Z3 0.0251
|
| 79 |
+
67 H31 34.6258 22.0504 30.3455 H 1 0Z3 0.0251
|
| 80 |
+
68 H32 31.7548 23.8911 32.0718 H 1 0Z3 0.0251
|
| 81 |
+
69 H33 31.6835 23.3234 30.3691 H 1 0Z3 0.0251
|
| 82 |
+
70 H34 33.1596 24.1437 30.9813 H 1 0Z3 0.0251
|
| 83 |
+
@<TRIPOS>BOND
|
| 84 |
+
1 7 8 1
|
| 85 |
+
2 8 11 1
|
| 86 |
+
3 8 9 1
|
| 87 |
+
4 9 10 2
|
| 88 |
+
5 11 12 1
|
| 89 |
+
6 12 13 1
|
| 90 |
+
7 13 14 1
|
| 91 |
+
8 14 15 1
|
| 92 |
+
9 16 17 1
|
| 93 |
+
10 17 20 1
|
| 94 |
+
11 17 18 1
|
| 95 |
+
12 18 19 2
|
| 96 |
+
13 20 21 1
|
| 97 |
+
14 21 22 ar
|
| 98 |
+
15 21 23 ar
|
| 99 |
+
16 23 25 ar
|
| 100 |
+
17 25 26 ar
|
| 101 |
+
18 24 26 ar
|
| 102 |
+
19 22 24 ar
|
| 103 |
+
20 9 16 am
|
| 104 |
+
21 1 2 2
|
| 105 |
+
22 1 3 1
|
| 106 |
+
23 7 1 am
|
| 107 |
+
24 3 4 1
|
| 108 |
+
25 3 5 1
|
| 109 |
+
26 3 6 1
|
| 110 |
+
27 18 27 am
|
| 111 |
+
28 27 28 1
|
| 112 |
+
29 28 29 ar
|
| 113 |
+
30 28 33 ar
|
| 114 |
+
31 29 30 ar
|
| 115 |
+
32 30 31 ar
|
| 116 |
+
33 31 32 ar
|
| 117 |
+
34 31 34 1
|
| 118 |
+
35 32 33 ar
|
| 119 |
+
36 34 35 1
|
| 120 |
+
37 34 36 1
|
| 121 |
+
38 7 37 1
|
| 122 |
+
39 8 38 1
|
| 123 |
+
40 11 39 1
|
| 124 |
+
41 11 40 1
|
| 125 |
+
42 12 41 1
|
| 126 |
+
43 12 42 1
|
| 127 |
+
44 13 43 1
|
| 128 |
+
45 13 44 1
|
| 129 |
+
46 14 45 1
|
| 130 |
+
47 14 46 1
|
| 131 |
+
48 15 47 1
|
| 132 |
+
49 15 48 1
|
| 133 |
+
50 15 49 1
|
| 134 |
+
51 16 50 1
|
| 135 |
+
52 17 51 1
|
| 136 |
+
53 20 52 1
|
| 137 |
+
54 20 53 1
|
| 138 |
+
55 22 54 1
|
| 139 |
+
56 23 55 1
|
| 140 |
+
57 24 56 1
|
| 141 |
+
58 25 57 1
|
| 142 |
+
59 26 58 1
|
| 143 |
+
60 27 59 1
|
| 144 |
+
61 29 60 1
|
| 145 |
+
62 30 61 1
|
| 146 |
+
63 32 62 1
|
| 147 |
+
64 33 63 1
|
| 148 |
+
65 34 64 1
|
| 149 |
+
66 35 65 1
|
| 150 |
+
67 35 66 1
|
| 151 |
+
68 35 67 1
|
| 152 |
+
69 36 68 1
|
| 153 |
+
70 36 69 1
|
| 154 |
+
71 36 70 1
|
| 155 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 156 |
+
1 0Z3 1
|
| 157 |
+
|
1elc/1elc_ligand.sdf
ADDED
|
@@ -0,0 +1,147 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1elc_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
70 71 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
42.8050 20.7570 36.2120 C 0 0 0 0 0
|
| 6 |
+
43.2220 19.6600 35.7850 O 0 0 0 0 0
|
| 7 |
+
43.3350 22.1690 35.5980 C 0 0 0 0 0
|
| 8 |
+
44.5760 22.5880 35.9040 F 0 0 0 0 0
|
| 9 |
+
43.3400 22.1380 34.2310 F 0 0 0 0 0
|
| 10 |
+
42.5450 23.2360 35.9070 F 0 0 0 0 0
|
| 11 |
+
41.9850 20.7120 37.3110 N 0 0 0 0 0
|
| 12 |
+
41.1470 19.5470 37.7390 C 0 0 0 0 0
|
| 13 |
+
39.9350 20.2470 38.3590 C 0 0 0 0 0
|
| 14 |
+
39.5500 20.1350 39.5140 O 0 0 0 0 0
|
| 15 |
+
41.6950 18.6340 38.8360 C 0 0 0 0 0
|
| 16 |
+
41.7310 17.1930 38.3090 C 0 0 0 0 0
|
| 17 |
+
42.0520 16.1940 39.4090 C 0 0 0 0 0
|
| 18 |
+
42.4190 14.8100 38.8540 C 0 0 0 0 0
|
| 19 |
+
43.7640 14.7820 38.3030 N 0 3 0 0 0
|
| 20 |
+
39.2820 20.8490 37.3710 N 0 0 0 0 0
|
| 21 |
+
38.3090 21.8990 37.4870 C 0 0 0 0 0
|
| 22 |
+
36.8880 21.5760 36.9920 C 0 0 0 0 0
|
| 23 |
+
36.1860 20.7300 37.5860 O 0 0 0 0 0
|
| 24 |
+
39.0710 22.9630 36.7310 C 0 0 0 0 0
|
| 25 |
+
39.5100 24.0670 37.6060 C 0 0 0 0 0
|
| 26 |
+
40.4130 23.8390 38.6290 C 0 0 0 0 0
|
| 27 |
+
38.9750 25.3110 37.3900 C 0 0 0 0 0
|
| 28 |
+
40.7890 24.8850 39.4520 C 0 0 0 0 0
|
| 29 |
+
39.3470 26.3550 38.2160 C 0 0 0 0 0
|
| 30 |
+
40.2460 26.1450 39.2320 C 0 0 0 0 0
|
| 31 |
+
36.5460 22.4810 36.0050 N 0 0 0 0 0
|
| 32 |
+
35.5440 22.3810 35.1150 C 0 0 0 0 0
|
| 33 |
+
35.2290 21.1470 34.5420 C 0 0 0 0 0
|
| 34 |
+
34.3760 21.0890 33.4530 C 0 0 0 0 0
|
| 35 |
+
33.8090 22.2580 32.9150 C 0 0 0 0 0
|
| 36 |
+
34.1070 23.5020 33.4970 C 0 0 0 0 0
|
| 37 |
+
34.9690 23.5580 34.5920 C 0 0 0 0 0
|
| 38 |
+
32.9050 22.1250 31.6650 C 0 0 0 0 0
|
| 39 |
+
33.7410 21.4370 30.5710 C 0 0 0 0 0
|
| 40 |
+
32.3370 23.4620 31.2430 C 0 0 0 0 0
|
| 41 |
+
41.9421 21.5502 37.8906 H 0 0 0 0 0
|
| 42 |
+
41.0171 18.8908 36.8784 H 0 0 0 0 0
|
| 43 |
+
41.0546 18.6892 39.7163 H 0 0 0 0 0
|
| 44 |
+
42.7006 18.9513 39.1121 H 0 0 0 0 0
|
| 45 |
+
42.5100 17.1266 37.5495 H 0 0 0 0 0
|
| 46 |
+
40.7474 16.9523 37.9055 H 0 0 0 0 0
|
| 47 |
+
41.1652 16.0828 40.0329 H 0 0 0 0 0
|
| 48 |
+
42.9085 16.5712 39.9677 H 0 0 0 0 0
|
| 49 |
+
41.7187 14.5671 38.0549 H 0 0 0 0 0
|
| 50 |
+
42.3714 14.0915 39.6723 H 0 0 0 0 0
|
| 51 |
+
43.9650 13.8475 37.9471 H 0 0 0 0 0
|
| 52 |
+
43.8329 15.4586 37.5429 H 0 0 0 0 0
|
| 53 |
+
44.4345 15.0203 39.0338 H 0 0 0 0 0
|
| 54 |
+
39.4952 20.5303 36.4258 H 0 0 0 0 0
|
| 55 |
+
38.0182 22.1658 38.5031 H 0 0 0 0 0
|
| 56 |
+
38.4086 23.3773 35.9710 H 0 0 0 0 0
|
| 57 |
+
39.9587 22.5005 36.2994 H 0 0 0 0 0
|
| 58 |
+
40.8252 22.8421 38.7853 H 0 0 0 0 0
|
| 59 |
+
38.2662 25.4743 36.5782 H 0 0 0 0 0
|
| 60 |
+
41.5009 24.7233 40.2614 H 0 0 0 0 0
|
| 61 |
+
38.9253 27.3480 38.0602 H 0 0 0 0 0
|
| 62 |
+
40.5373 26.9765 39.8737 H 0 0 0 0 0
|
| 63 |
+
37.1204 23.3218 35.9452 H 0 0 0 0 0
|
| 64 |
+
35.6541 20.2307 34.9516 H 0 0 0 0 0
|
| 65 |
+
34.1405 20.1231 33.0061 H 0 0 0 0 0
|
| 66 |
+
33.6681 24.4156 33.0959 H 0 0 0 0 0
|
| 67 |
+
35.2006 24.5206 35.0480 H 0 0 0 0 0
|
| 68 |
+
32.0275 21.5146 31.8780 H 0 0 0 0 0
|
| 69 |
+
34.6174 22.0457 30.3485 H 0 0 0 0 0
|
| 70 |
+
34.0586 20.4551 30.9218 H 0 0 0 0 0
|
| 71 |
+
33.1370 21.3247 29.6707 H 0 0 0 0 0
|
| 72 |
+
31.7410 23.8753 32.0567 H 0 0 0 0 0
|
| 73 |
+
33.1538 24.1439 31.0064 H 0 0 0 0 0
|
| 74 |
+
31.7084 23.3268 30.3629 H 0 0 0 0 0
|
| 75 |
+
7 8 1 0 0 0
|
| 76 |
+
8 11 1 0 0 0
|
| 77 |
+
8 9 1 0 0 0
|
| 78 |
+
9 10 2 0 0 0
|
| 79 |
+
11 12 1 0 0 0
|
| 80 |
+
12 13 1 0 0 0
|
| 81 |
+
13 14 1 0 0 0
|
| 82 |
+
14 15 1 0 0 0
|
| 83 |
+
16 17 1 0 0 0
|
| 84 |
+
17 20 1 0 0 0
|
| 85 |
+
17 18 1 0 0 0
|
| 86 |
+
18 19 2 0 0 0
|
| 87 |
+
20 21 1 0 0 0
|
| 88 |
+
21 22 4 0 0 0
|
| 89 |
+
21 23 4 0 0 0
|
| 90 |
+
23 25 4 0 0 0
|
| 91 |
+
25 26 4 0 0 0
|
| 92 |
+
24 26 4 0 0 0
|
| 93 |
+
22 24 4 0 0 0
|
| 94 |
+
9 16 1 0 0 0
|
| 95 |
+
1 2 2 0 0 0
|
| 96 |
+
1 3 1 0 0 0
|
| 97 |
+
7 1 1 0 0 0
|
| 98 |
+
3 4 1 0 0 0
|
| 99 |
+
3 5 1 0 0 0
|
| 100 |
+
3 6 1 0 0 0
|
| 101 |
+
18 27 1 0 0 0
|
| 102 |
+
27 28 1 0 0 0
|
| 103 |
+
28 29 4 0 0 0
|
| 104 |
+
28 33 4 0 0 0
|
| 105 |
+
29 30 4 0 0 0
|
| 106 |
+
30 31 4 0 0 0
|
| 107 |
+
31 32 4 0 0 0
|
| 108 |
+
31 34 1 0 0 0
|
| 109 |
+
32 33 4 0 0 0
|
| 110 |
+
34 35 1 0 0 0
|
| 111 |
+
34 36 1 0 0 0
|
| 112 |
+
7 37 1 0 0 0
|
| 113 |
+
8 38 1 0 0 0
|
| 114 |
+
11 39 1 0 0 0
|
| 115 |
+
11 40 1 0 0 0
|
| 116 |
+
12 41 1 0 0 0
|
| 117 |
+
12 42 1 0 0 0
|
| 118 |
+
13 43 1 0 0 0
|
| 119 |
+
13 44 1 0 0 0
|
| 120 |
+
14 45 1 0 0 0
|
| 121 |
+
14 46 1 0 0 0
|
| 122 |
+
15 47 1 0 0 0
|
| 123 |
+
15 48 1 0 0 0
|
| 124 |
+
15 49 1 0 0 0
|
| 125 |
+
16 50 1 0 0 0
|
| 126 |
+
17 51 1 0 0 0
|
| 127 |
+
20 52 1 0 0 0
|
| 128 |
+
20 53 1 0 0 0
|
| 129 |
+
22 54 1 0 0 0
|
| 130 |
+
23 55 1 0 0 0
|
| 131 |
+
24 56 1 0 0 0
|
| 132 |
+
25 57 1 0 0 0
|
| 133 |
+
26 58 1 0 0 0
|
| 134 |
+
27 59 1 0 0 0
|
| 135 |
+
29 60 1 0 0 0
|
| 136 |
+
30 61 1 0 0 0
|
| 137 |
+
32 62 1 0 0 0
|
| 138 |
+
33 63 1 0 0 0
|
| 139 |
+
34 64 1 0 0 0
|
| 140 |
+
35 65 1 0 0 0
|
| 141 |
+
35 66 1 0 0 0
|
| 142 |
+
35 67 1 0 0 0
|
| 143 |
+
36 68 1 0 0 0
|
| 144 |
+
36 69 1 0 0 0
|
| 145 |
+
36 70 1 0 0 0
|
| 146 |
+
M END
|
| 147 |
+
$$$$
|
1elc/1elc_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1elc/1elc_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1fvv/1fvv_ligand.mol2
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1fvv_ligand
|
| 7 |
+
46 50 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O1 -11.2220 207.9760 109.2120 O.2 1 107 -0.2894
|
| 14 |
+
2 C2 -12.1710 207.5020 109.8420 C.2 1 107 0.2426
|
| 15 |
+
3 N3 -13.3600 207.1380 109.3200 N.2 1 107 -0.3257
|
| 16 |
+
4 C4 -14.2170 206.7500 110.3000 C.2 1 107 0.0057
|
| 17 |
+
5 C5 -15.6380 206.3600 110.1900 C.2 1 107 -0.0493
|
| 18 |
+
6 C6 -16.3860 205.9670 111.3900 C.2 1 107 -0.0475
|
| 19 |
+
7 C7 -15.7410 206.0270 112.6900 C.2 1 107 0.0427
|
| 20 |
+
8 N8 -16.2320 205.7140 113.9500 N.2 1 107 -0.3016
|
| 21 |
+
9 C9 -15.3040 205.8370 114.9320 C.2 1 107 0.0774
|
| 22 |
+
10 S10 -13.8140 206.4530 114.4280 S.3 1 107 0.0090
|
| 23 |
+
11 C11 -14.2920 206.4680 112.8160 C.2 1 107 0.0781
|
| 24 |
+
12 C12 -13.5570 206.8060 111.5860 C.2 1 107 0.0600
|
| 25 |
+
13 C13 -12.2030 207.2550 111.3270 C.2 1 107 0.1047
|
| 26 |
+
14 C14 -11.1760 207.4750 112.1700 C.3 1 107 0.0974
|
| 27 |
+
15 N15 -10.1070 208.4390 111.7920 N.pl3 1 107 -0.2988
|
| 28 |
+
16 C16 -9.0990 208.8850 112.5560 C.ar 1 107 0.0416
|
| 29 |
+
17 C17 -9.2420 209.2080 114.0130 C.ar 1 107 -0.0424
|
| 30 |
+
18 C18 -8.0670 209.5940 114.7840 C.ar 1 107 -0.0465
|
| 31 |
+
19 C19 -6.7650 209.7680 114.0980 C.ar 1 107 0.1013
|
| 32 |
+
20 C20 -6.6070 209.4480 112.6660 C.ar 1 107 -0.0465
|
| 33 |
+
21 C21 -7.7830 209.0220 111.8860 C.ar 1 107 -0.0424
|
| 34 |
+
22 S22 -5.4220 210.3800 115.0540 S.o2 1 107 0.0867
|
| 35 |
+
23 O23 -4.2100 210.2890 114.2980 O.2 1 107 -0.1456
|
| 36 |
+
24 O24 -5.8540 211.6490 115.5540 O.2 1 107 -0.1456
|
| 37 |
+
25 N25 -5.2170 209.3650 116.3500 N.am 1 107 -0.1707
|
| 38 |
+
26 C27 -3.5620 206.0480 115.3440 C.ar 1 107 -0.0586
|
| 39 |
+
27 C28 -3.8620 205.2520 116.5560 C.ar 1 107 -0.0524
|
| 40 |
+
28 C29 -4.7090 205.8750 117.5970 C.ar 1 107 -0.0099
|
| 41 |
+
29 N30 -5.1930 207.2180 117.4430 N.ar 1 107 -0.2899
|
| 42 |
+
30 C31 -4.8230 208.0270 116.3130 C.ar 1 107 0.1336
|
| 43 |
+
31 C32 -4.0220 207.4320 115.1920 C.ar 1 107 -0.0176
|
| 44 |
+
32 H1 -16.1302 206.3642 109.2186 H 1 107 0.0483
|
| 45 |
+
33 H2 -17.4189 205.6323 111.3062 H 1 107 0.0741
|
| 46 |
+
34 H3 -15.5043 205.5599 115.9659 H 1 107 0.1178
|
| 47 |
+
35 H4 -10.6861 206.5043 112.3366 H 1 107 0.0866
|
| 48 |
+
36 H5 -11.6098 207.8338 113.1150 H 1 107 0.0866
|
| 49 |
+
37 H6 -10.1459 208.8069 110.8307 H 1 107 0.1810
|
| 50 |
+
38 H7 -10.2138 209.1548 114.4903 H 1 107 0.0515
|
| 51 |
+
39 H8 -8.1450 209.7530 115.8534 H 1 107 0.0602
|
| 52 |
+
40 H9 -5.6351 209.5255 112.1922 H 1 107 0.0602
|
| 53 |
+
41 H10 -7.6864 208.8098 110.8274 H 1 107 0.0515
|
| 54 |
+
42 H11 -5.3947 209.7535 117.2542 H 1 107 0.2227
|
| 55 |
+
43 H12 -2.9855 205.5944 114.5459 H 1 107 0.0685
|
| 56 |
+
44 H13 -3.4742 204.2469 116.6765 H 1 107 0.0562
|
| 57 |
+
45 H14 -4.9671 205.3111 118.4861 H 1 107 0.0768
|
| 58 |
+
46 H15 -3.7916 208.0052 114.3013 H 1 107 0.0577
|
| 59 |
+
@<TRIPOS>BOND
|
| 60 |
+
1 2 1 2
|
| 61 |
+
2 2 3 1
|
| 62 |
+
3 13 2 1
|
| 63 |
+
4 4 3 2
|
| 64 |
+
5 4 5 1
|
| 65 |
+
6 12 4 1
|
| 66 |
+
7 5 6 2
|
| 67 |
+
8 7 6 1
|
| 68 |
+
9 7 8 1
|
| 69 |
+
10 11 7 2
|
| 70 |
+
11 9 8 2
|
| 71 |
+
12 10 9 1
|
| 72 |
+
13 11 10 1
|
| 73 |
+
14 12 11 1
|
| 74 |
+
15 13 12 2
|
| 75 |
+
16 14 13 1
|
| 76 |
+
17 15 14 1
|
| 77 |
+
18 16 15 1
|
| 78 |
+
19 17 16 ar
|
| 79 |
+
20 21 16 ar
|
| 80 |
+
21 18 17 ar
|
| 81 |
+
22 19 18 ar
|
| 82 |
+
23 19 20 ar
|
| 83 |
+
24 22 19 1
|
| 84 |
+
25 20 21 ar
|
| 85 |
+
26 22 23 2
|
| 86 |
+
27 22 24 2
|
| 87 |
+
28 25 22 am
|
| 88 |
+
29 30 25 1
|
| 89 |
+
30 27 26 ar
|
| 90 |
+
31 26 31 ar
|
| 91 |
+
32 28 27 ar
|
| 92 |
+
33 29 28 ar
|
| 93 |
+
34 29 30 ar
|
| 94 |
+
35 30 31 ar
|
| 95 |
+
36 5 32 1
|
| 96 |
+
37 6 33 1
|
| 97 |
+
38 9 34 1
|
| 98 |
+
39 14 35 1
|
| 99 |
+
40 14 36 1
|
| 100 |
+
41 15 37 1
|
| 101 |
+
42 17 38 1
|
| 102 |
+
43 18 39 1
|
| 103 |
+
44 20 40 1
|
| 104 |
+
45 21 41 1
|
| 105 |
+
46 25 42 1
|
| 106 |
+
47 26 43 1
|
| 107 |
+
48 27 44 1
|
| 108 |
+
49 28 45 1
|
| 109 |
+
50 31 46 1
|
| 110 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 111 |
+
1 107 1
|
| 112 |
+
|
1fvv/1fvv_ligand.sdf
ADDED
|
@@ -0,0 +1,102 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1fvv_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
46 50 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-11.2220 207.9760 109.2120 O 0 0 0 0 0
|
| 6 |
+
-12.1710 207.5020 109.8420 C 0 0 0 0 0
|
| 7 |
+
-13.3600 207.1380 109.3200 N 0 0 0 0 0
|
| 8 |
+
-14.2170 206.7500 110.3000 C 0 0 0 0 0
|
| 9 |
+
-15.6380 206.3600 110.1900 C 0 0 0 0 0
|
| 10 |
+
-16.3860 205.9670 111.3900 C 0 0 0 0 0
|
| 11 |
+
-15.7410 206.0270 112.6900 C 0 0 0 0 0
|
| 12 |
+
-16.2320 205.7140 113.9500 N 0 0 0 0 0
|
| 13 |
+
-15.3040 205.8370 114.9320 C 0 0 0 0 0
|
| 14 |
+
-13.8140 206.4530 114.4280 S 0 0 0 0 0
|
| 15 |
+
-14.2920 206.4680 112.8160 C 0 0 0 0 0
|
| 16 |
+
-13.5570 206.8060 111.5860 C 0 0 0 0 0
|
| 17 |
+
-12.2030 207.2550 111.3270 C 0 0 0 0 0
|
| 18 |
+
-11.1760 207.4750 112.1700 C 0 0 0 0 0
|
| 19 |
+
-10.1070 208.4390 111.7920 N 0 0 0 0 0
|
| 20 |
+
-9.0990 208.8850 112.5560 C 0 0 0 0 0
|
| 21 |
+
-9.2420 209.2080 114.0130 C 0 0 0 0 0
|
| 22 |
+
-8.0670 209.5940 114.7840 C 0 0 0 0 0
|
| 23 |
+
-6.7650 209.7680 114.0980 C 0 0 0 0 0
|
| 24 |
+
-6.6070 209.4480 112.6660 C 0 0 0 0 0
|
| 25 |
+
-7.7830 209.0220 111.8860 C 0 0 0 0 0
|
| 26 |
+
-5.4220 210.3800 115.0540 S 0 0 0 0 0
|
| 27 |
+
-4.2100 210.2890 114.2980 O 0 0 0 0 0
|
| 28 |
+
-5.8540 211.6490 115.5540 O 0 0 0 0 0
|
| 29 |
+
-5.2170 209.3650 116.3500 N 0 0 0 0 0
|
| 30 |
+
-3.5620 206.0480 115.3440 C 0 0 0 0 0
|
| 31 |
+
-3.8620 205.2520 116.5560 C 0 0 0 0 0
|
| 32 |
+
-4.7090 205.8750 117.5970 C 0 0 0 0 0
|
| 33 |
+
-5.1930 207.2180 117.4430 N 0 0 0 0 0
|
| 34 |
+
-4.8230 208.0270 116.3130 C 0 0 0 0 0
|
| 35 |
+
-4.0220 207.4320 115.1920 C 0 0 0 0 0
|
| 36 |
+
-16.1306 206.3642 109.2177 H 0 0 0 0 0
|
| 37 |
+
-17.4198 205.6320 111.3061 H 0 0 0 0 0
|
| 38 |
+
-15.5045 205.5596 115.9669 H 0 0 0 0 0
|
| 39 |
+
-10.6673 206.5136 112.2413 H 0 0 0 0 0
|
| 40 |
+
-11.6364 207.9084 113.0579 H 0 0 0 0 0
|
| 41 |
+
-10.1455 208.8033 110.8400 H 0 0 0 0 0
|
| 42 |
+
-10.2192 209.1545 114.4929 H 0 0 0 0 0
|
| 43 |
+
-8.1455 209.7538 115.8594 H 0 0 0 0 0
|
| 44 |
+
-5.6298 209.5259 112.1895 H 0 0 0 0 0
|
| 45 |
+
-7.6858 208.8086 110.8215 H 0 0 0 0 0
|
| 46 |
+
-5.3983 209.7613 117.2722 H 0 0 0 0 0
|
| 47 |
+
-2.9824 205.5919 114.5415 H 0 0 0 0 0
|
| 48 |
+
-3.4721 204.2414 116.6772 H 0 0 0 0 0
|
| 49 |
+
-4.9685 205.3080 118.4910 H 0 0 0 0 0
|
| 50 |
+
-3.7903 208.0084 114.2963 H 0 0 0 0 0
|
| 51 |
+
2 1 2 0 0 0
|
| 52 |
+
2 3 1 0 0 0
|
| 53 |
+
13 2 1 0 0 0
|
| 54 |
+
4 3 2 0 0 0
|
| 55 |
+
4 5 1 0 0 0
|
| 56 |
+
12 4 1 0 0 0
|
| 57 |
+
5 6 2 0 0 0
|
| 58 |
+
7 6 1 0 0 0
|
| 59 |
+
7 8 4 0 0 0
|
| 60 |
+
11 7 4 0 0 0
|
| 61 |
+
9 8 4 0 0 0
|
| 62 |
+
10 9 4 0 0 0
|
| 63 |
+
11 10 4 0 0 0
|
| 64 |
+
12 11 1 0 0 0
|
| 65 |
+
13 12 2 0 0 0
|
| 66 |
+
14 13 1 0 0 0
|
| 67 |
+
15 14 1 0 0 0
|
| 68 |
+
16 15 1 0 0 0
|
| 69 |
+
17 16 4 0 0 0
|
| 70 |
+
21 16 4 0 0 0
|
| 71 |
+
18 17 4 0 0 0
|
| 72 |
+
19 18 4 0 0 0
|
| 73 |
+
19 20 4 0 0 0
|
| 74 |
+
22 19 1 0 0 0
|
| 75 |
+
20 21 4 0 0 0
|
| 76 |
+
22 23 2 0 0 0
|
| 77 |
+
22 24 2 0 0 0
|
| 78 |
+
25 22 1 0 0 0
|
| 79 |
+
30 25 1 0 0 0
|
| 80 |
+
27 26 4 0 0 0
|
| 81 |
+
26 31 4 0 0 0
|
| 82 |
+
28 27 4 0 0 0
|
| 83 |
+
29 28 4 0 0 0
|
| 84 |
+
29 30 4 0 0 0
|
| 85 |
+
30 31 4 0 0 0
|
| 86 |
+
5 32 1 0 0 0
|
| 87 |
+
6 33 1 0 0 0
|
| 88 |
+
9 34 1 0 0 0
|
| 89 |
+
14 35 1 0 0 0
|
| 90 |
+
14 36 1 0 0 0
|
| 91 |
+
15 37 1 0 0 0
|
| 92 |
+
17 38 1 0 0 0
|
| 93 |
+
18 39 1 0 0 0
|
| 94 |
+
20 40 1 0 0 0
|
| 95 |
+
21 41 1 0 0 0
|
| 96 |
+
25 42 1 0 0 0
|
| 97 |
+
26 43 1 0 0 0
|
| 98 |
+
27 44 1 0 0 0
|
| 99 |
+
28 45 1 0 0 0
|
| 100 |
+
31 46 1 0 0 0
|
| 101 |
+
M END
|
| 102 |
+
$$$$
|
1fvv/1fvv_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1fvv/1fvv_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1fwe/1fwe_ligand.mol2
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Fri Nov 18 12:10:00 2016
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1fwe_ligand
|
| 7 |
+
10 9 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 70.7460 108.0780 71.6150 C.3 1 HAE 0.0273
|
| 14 |
+
2 C2 69.3800 107.4350 71.5780 C.2 1 HAE 0.1957
|
| 15 |
+
3 O2 68.6350 107.6130 70.6140 O.2 1 HAE -0.3973
|
| 16 |
+
4 N 69.0620 106.6910 72.6110 N.am 1 HAE -0.1645
|
| 17 |
+
5 O 67.8240 106.1210 72.8270 O.3 1 HAE -0.2717
|
| 18 |
+
6 H 71.2559 107.8021 72.5498 H 1 HAE 0.0466
|
| 19 |
+
7 H 70.6380 109.1715 71.5652 H 1 HAE 0.0466
|
| 20 |
+
8 H 71.3391 107.7287 70.7570 H 1 HAE 0.0466
|
| 21 |
+
9 H 69.7721 106.5241 73.2950 H 1 HAE 0.2216
|
| 22 |
+
10 H 67.8403 105.6298 73.6400 H 1 HAE 0.2490
|
| 23 |
+
@<TRIPOS>BOND
|
| 24 |
+
1 1 2 1
|
| 25 |
+
2 2 3 2
|
| 26 |
+
3 2 4 am
|
| 27 |
+
4 4 5 1
|
| 28 |
+
5 1 6 1
|
| 29 |
+
6 1 7 1
|
| 30 |
+
7 1 8 1
|
| 31 |
+
8 4 9 1
|
| 32 |
+
9 5 10 1
|
| 33 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 34 |
+
1 HAE 1
|
| 35 |
+
|
1fwe/1fwe_ligand.sdf
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1fwe_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
10 9 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
70.7460 108.0780 71.6150 C 0 0 0 0 0
|
| 6 |
+
69.3800 107.4350 71.5780 C 0 0 0 0 0
|
| 7 |
+
68.6350 107.6130 70.6140 O 0 0 0 0 0
|
| 8 |
+
69.0620 106.6910 72.6110 N 0 0 0 0 0
|
| 9 |
+
67.8240 106.1210 72.8270 O 0 0 0 0 0
|
| 10 |
+
71.3326 107.7311 70.7643 H 0 0 0 0 0
|
| 11 |
+
70.6376 109.1615 71.5656 H 0 0 0 0 0
|
| 12 |
+
71.2502 107.8039 72.5417 H 0 0 0 0 0
|
| 13 |
+
69.7863 106.5207 73.3087 H 0 0 0 0 0
|
| 14 |
+
67.8405 105.6246 73.6485 H 0 0 0 0 0
|
| 15 |
+
1 2 1 0 0 0
|
| 16 |
+
2 3 2 0 0 0
|
| 17 |
+
2 4 1 0 0 0
|
| 18 |
+
4 5 1 0 0 0
|
| 19 |
+
1 6 1 0 0 0
|
| 20 |
+
1 7 1 0 0 0
|
| 21 |
+
1 8 1 0 0 0
|
| 22 |
+
4 9 1 0 0 0
|
| 23 |
+
5 10 1 0 0 0
|
| 24 |
+
M END
|
| 25 |
+
$$$$
|
1fwe/1fwe_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1fwe/1fwe_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gni/1gni_ligand.mol2
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1gni_ligand
|
| 7 |
+
53 52 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 29.8480 12.4910 35.5290 C.2 1 OLA 0.0348
|
| 14 |
+
2 O1 29.0440 13.4120 35.8070 O.co2 1 OLA -0.5690
|
| 15 |
+
3 O2 29.4660 11.3690 35.1310 O.co2 1 OLA -0.5690
|
| 16 |
+
4 C2 31.3590 12.7330 35.6690 C.3 1 OLA 0.0002
|
| 17 |
+
5 C3 31.6740 13.6900 36.8330 C.3 1 OLA -0.0414
|
| 18 |
+
6 C4 33.1970 13.8230 36.8300 C.3 1 OLA -0.0515
|
| 19 |
+
7 C5 33.6470 15.2850 36.8820 C.3 1 OLA -0.0528
|
| 20 |
+
8 C6 35.1420 15.4200 36.5820 C.3 1 OLA -0.0515
|
| 21 |
+
9 C7 35.4050 15.8770 35.1430 C.3 1 OLA -0.0464
|
| 22 |
+
10 C8 36.6180 15.1890 34.5120 C.3 1 OLA -0.0365
|
| 23 |
+
11 C9 37.1540 15.9590 33.2960 C.2 1 OLA -0.0987
|
| 24 |
+
12 C10 37.1270 15.5550 31.9990 C.2 1 OLA -0.0987
|
| 25 |
+
13 C11 36.5580 14.2480 31.4630 C.3 1 OLA -0.0365
|
| 26 |
+
14 C12 35.6750 14.4660 30.2420 C.3 1 OLA -0.0464
|
| 27 |
+
15 C13 34.4940 13.4960 30.2550 C.3 1 OLA -0.0515
|
| 28 |
+
16 C14 33.6810 13.5500 28.9680 C.3 1 OLA -0.0529
|
| 29 |
+
17 C15 32.5900 12.4970 28.9760 C.3 1 OLA -0.0531
|
| 30 |
+
18 C16 32.5080 11.8090 27.6250 C.3 1 OLA -0.0533
|
| 31 |
+
19 C17 33.1240 10.4130 27.6620 C.3 1 OLA -0.0559
|
| 32 |
+
20 C18 32.0470 9.3460 27.6640 C.3 1 OLA -0.0653
|
| 33 |
+
21 H1 31.7386 13.1710 34.7341 H 1 OLA 0.0430
|
| 34 |
+
22 H2 31.8592 11.7707 35.8527 H 1 OLA 0.0430
|
| 35 |
+
23 H3 31.3241 13.2681 37.7867 H 1 OLA 0.0283
|
| 36 |
+
24 H4 31.1995 14.6687 36.6689 H 1 OLA 0.0283
|
| 37 |
+
25 H5 33.5915 13.3629 35.9121 H 1 OLA 0.0266
|
| 38 |
+
26 H6 33.6009 13.2961 37.7071 H 1 OLA 0.0266
|
| 39 |
+
27 H7 33.4459 15.6859 37.8864 H 1 OLA 0.0265
|
| 40 |
+
28 H8 33.0790 15.8611 36.1367 H 1 OLA 0.0265
|
| 41 |
+
29 H9 35.6240 14.4435 36.7371 H 1 OLA 0.0267
|
| 42 |
+
30 H10 35.5767 16.1574 37.2728 H 1 OLA 0.0267
|
| 43 |
+
31 H11 35.5797 16.9630 35.1460 H 1 OLA 0.0285
|
| 44 |
+
32 H12 34.5170 15.6501 34.5348 H 1 OLA 0.0285
|
| 45 |
+
33 H13 36.3248 14.1787 34.1905 H 1 OLA 0.0388
|
| 46 |
+
34 H14 37.4161 15.1168 35.2655 H 1 OLA 0.0388
|
| 47 |
+
35 H15 37.6030 16.9311 33.4942 H 1 OLA 0.0450
|
| 48 |
+
36 H16 37.5569 16.2367 31.2666 H 1 OLA 0.0450
|
| 49 |
+
37 H17 35.9593 13.7713 32.2531 H 1 OLA 0.0388
|
| 50 |
+
38 H18 37.3913 13.5861 31.1845 H 1 OLA 0.0388
|
| 51 |
+
39 H19 36.2693 14.3004 29.3313 H 1 OLA 0.0285
|
| 52 |
+
40 H20 35.2954 15.4984 30.2495 H 1 OLA 0.0285
|
| 53 |
+
41 H21 33.8363 13.7521 31.0987 H 1 OLA 0.0267
|
| 54 |
+
42 H22 34.8784 12.4738 30.3868 H 1 OLA 0.0267
|
| 55 |
+
43 H23 34.3484 13.3713 28.1120 H 1 OLA 0.0265
|
| 56 |
+
44 H24 33.2213 14.5448 28.8732 H 1 OLA 0.0265
|
| 57 |
+
45 H25 31.6251 12.9765 29.1976 H 1 OLA 0.0265
|
| 58 |
+
46 H26 32.8141 11.7488 29.7506 H 1 OLA 0.0265
|
| 59 |
+
47 H27 33.0467 12.4163 26.8827 H 1 OLA 0.0265
|
| 60 |
+
48 H28 31.4511 11.7242 27.3321 H 1 OLA 0.0265
|
| 61 |
+
49 H29 33.7326 10.3120 28.5727 H 1 OLA 0.0263
|
| 62 |
+
50 H30 33.7631 10.2778 26.7770 H 1 OLA 0.0263
|
| 63 |
+
51 H31 32.5162 8.3515 27.6909 H 1 OLA 0.0230
|
| 64 |
+
52 H32 31.4369 9.4391 26.7534 H 1 OLA 0.0230
|
| 65 |
+
53 H33 31.4064 9.4732 28.5491 H 1 OLA 0.0230
|
| 66 |
+
@<TRIPOS>BOND
|
| 67 |
+
1 1 2 ar
|
| 68 |
+
2 1 3 ar
|
| 69 |
+
3 1 4 1
|
| 70 |
+
4 4 5 1
|
| 71 |
+
5 5 6 1
|
| 72 |
+
6 6 7 1
|
| 73 |
+
7 7 8 1
|
| 74 |
+
8 8 9 1
|
| 75 |
+
9 9 10 1
|
| 76 |
+
10 10 11 1
|
| 77 |
+
11 11 12 2
|
| 78 |
+
12 12 13 1
|
| 79 |
+
13 13 14 1
|
| 80 |
+
14 14 15 1
|
| 81 |
+
15 15 16 1
|
| 82 |
+
16 16 17 1
|
| 83 |
+
17 17 18 1
|
| 84 |
+
18 18 19 1
|
| 85 |
+
19 19 20 1
|
| 86 |
+
20 4 21 1
|
| 87 |
+
21 4 22 1
|
| 88 |
+
22 5 23 1
|
| 89 |
+
23 5 24 1
|
| 90 |
+
24 6 25 1
|
| 91 |
+
25 6 26 1
|
| 92 |
+
26 7 27 1
|
| 93 |
+
27 7 28 1
|
| 94 |
+
28 8 29 1
|
| 95 |
+
29 8 30 1
|
| 96 |
+
30 9 31 1
|
| 97 |
+
31 9 32 1
|
| 98 |
+
32 10 33 1
|
| 99 |
+
33 10 34 1
|
| 100 |
+
34 11 35 1
|
| 101 |
+
35 12 36 1
|
| 102 |
+
36 13 37 1
|
| 103 |
+
37 13 38 1
|
| 104 |
+
38 14 39 1
|
| 105 |
+
39 14 40 1
|
| 106 |
+
40 15 41 1
|
| 107 |
+
41 15 42 1
|
| 108 |
+
42 16 43 1
|
| 109 |
+
43 16 44 1
|
| 110 |
+
44 17 45 1
|
| 111 |
+
45 17 46 1
|
| 112 |
+
46 18 47 1
|
| 113 |
+
47 18 48 1
|
| 114 |
+
48 19 49 1
|
| 115 |
+
49 19 50 1
|
| 116 |
+
50 20 51 1
|
| 117 |
+
51 20 52 1
|
| 118 |
+
52 20 53 1
|
| 119 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 120 |
+
1 OLA 1
|
| 121 |
+
|
1gni/1gni_ligand.sdf
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1gni_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
54 53 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
29.8480 12.4910 35.5290 C 0 0 0 0 0
|
| 6 |
+
29.0440 13.4120 35.8070 O 0 0 0 0 0
|
| 7 |
+
29.4660 11.3690 35.1310 O 0 0 0 0 0
|
| 8 |
+
31.3590 12.7330 35.6690 C 0 0 0 0 0
|
| 9 |
+
31.6740 13.6900 36.8330 C 0 0 0 0 0
|
| 10 |
+
33.1970 13.8230 36.8300 C 0 0 0 0 0
|
| 11 |
+
33.6470 15.2850 36.8820 C 0 0 0 0 0
|
| 12 |
+
35.1420 15.4200 36.5820 C 0 0 0 0 0
|
| 13 |
+
35.4050 15.8770 35.1430 C 0 0 0 0 0
|
| 14 |
+
36.6180 15.1890 34.5120 C 0 0 0 0 0
|
| 15 |
+
37.1540 15.9590 33.2960 C 0 0 0 0 0
|
| 16 |
+
37.1270 15.5550 31.9990 C 0 0 0 0 0
|
| 17 |
+
36.5580 14.2480 31.4630 C 0 0 0 0 0
|
| 18 |
+
35.6750 14.4660 30.2420 C 0 0 0 0 0
|
| 19 |
+
34.4940 13.4960 30.2550 C 0 0 0 0 0
|
| 20 |
+
33.6810 13.5500 28.9680 C 0 0 0 0 0
|
| 21 |
+
32.5900 12.4970 28.9760 C 0 0 0 0 0
|
| 22 |
+
32.5080 11.8090 27.6250 C 0 0 0 0 0
|
| 23 |
+
33.1240 10.4130 27.6620 C 0 0 0 0 0
|
| 24 |
+
32.0470 9.3460 27.6640 C 0 0 0 0 0
|
| 25 |
+
29.5333 14.1873 36.0918 H 0 0 0 0 0
|
| 26 |
+
31.7229 13.1828 34.7452 H 0 0 0 0 0
|
| 27 |
+
31.8439 11.7773 35.8680 H 0 0 0 0 0
|
| 28 |
+
31.3025 13.3078 37.7838 H 0 0 0 0 0
|
| 29 |
+
31.1827 14.6550 36.7085 H 0 0 0 0 0
|
| 30 |
+
33.5750 13.3834 35.9070 H 0 0 0 0 0
|
| 31 |
+
33.5844 13.3162 37.7139 H 0 0 0 0 0
|
| 32 |
+
33.4589 15.6697 37.8844 H 0 0 0 0 0
|
| 33 |
+
33.0910 15.8453 36.1303 H 0 0 0 0 0
|
| 34 |
+
35.6046 14.4423 36.7171 H 0 0 0 0 0
|
| 35 |
+
35.5569 16.1688 37.2567 H 0 0 0 0 0
|
| 36 |
+
35.6040 16.9485 35.1650 H 0 0 0 0 0
|
| 37 |
+
34.5292 15.6205 34.5469 H 0 0 0 0 0
|
| 38 |
+
36.3101 14.1984 34.1774 H 0 0 0 0 0
|
| 39 |
+
37.4093 15.1432 35.2602 H 0 0 0 0 0
|
| 40 |
+
37.6034 16.9320 33.4944 H 0 0 0 0 0
|
| 41 |
+
37.5573 16.2373 31.2659 H 0 0 0 0 0
|
| 42 |
+
35.9497 13.7954 32.2461 H 0 0 0 0 0
|
| 43 |
+
37.3912 13.6090 31.1704 H 0 0 0 0 0
|
| 44 |
+
36.2657 14.2926 29.3425 H 0 0 0 0 0
|
| 45 |
+
35.2945 15.4873 30.2581 H 0 0 0 0 0
|
| 46 |
+
33.8380 13.7757 31.0793 H 0 0 0 0 0
|
| 47 |
+
34.8895 12.4858 30.3609 H 0 0 0 0 0
|
| 48 |
+
34.3452 13.3617 28.1245 H 0 0 0 0 0
|
| 49 |
+
33.2194 14.5339 28.8848 H 0 0 0 0 0
|
| 50 |
+
31.6348 12.9773 29.1882 H 0 0 0 0 0
|
| 51 |
+
32.8198 11.7537 29.7394 H 0 0 0 0 0
|
| 52 |
+
33.0602 12.4083 26.9011 H 0 0 0 0 0
|
| 53 |
+
31.4570 11.7128 27.3526 H 0 0 0 0 0
|
| 54 |
+
33.7159 10.3152 28.5721 H 0 0 0 0 0
|
| 55 |
+
33.7464 10.2810 26.7769 H 0 0 0 0 0
|
| 56 |
+
31.4130 9.4732 28.5415 H 0 0 0 0 0
|
| 57 |
+
31.4432 9.4393 26.7613 H 0 0 0 0 0
|
| 58 |
+
32.5132 8.3611 27.6906 H 0 0 0 0 0
|
| 59 |
+
1 2 1 0 0 0
|
| 60 |
+
1 3 2 0 0 0
|
| 61 |
+
1 4 1 0 0 0
|
| 62 |
+
4 5 1 0 0 0
|
| 63 |
+
5 6 1 0 0 0
|
| 64 |
+
6 7 1 0 0 0
|
| 65 |
+
7 8 1 0 0 0
|
| 66 |
+
8 9 1 0 0 0
|
| 67 |
+
9 10 1 0 0 0
|
| 68 |
+
10 11 1 0 0 0
|
| 69 |
+
11 12 2 0 0 0
|
| 70 |
+
12 13 1 0 0 0
|
| 71 |
+
13 14 1 0 0 0
|
| 72 |
+
14 15 1 0 0 0
|
| 73 |
+
15 16 1 0 0 0
|
| 74 |
+
16 17 1 0 0 0
|
| 75 |
+
17 18 1 0 0 0
|
| 76 |
+
18 19 1 0 0 0
|
| 77 |
+
19 20 1 0 0 0
|
| 78 |
+
2 21 1 0 0 0
|
| 79 |
+
4 22 1 0 0 0
|
| 80 |
+
4 23 1 0 0 0
|
| 81 |
+
5 24 1 0 0 0
|
| 82 |
+
5 25 1 0 0 0
|
| 83 |
+
6 26 1 0 0 0
|
| 84 |
+
6 27 1 0 0 0
|
| 85 |
+
7 28 1 0 0 0
|
| 86 |
+
7 29 1 0 0 0
|
| 87 |
+
8 30 1 0 0 0
|
| 88 |
+
8 31 1 0 0 0
|
| 89 |
+
9 32 1 0 0 0
|
| 90 |
+
9 33 1 0 0 0
|
| 91 |
+
10 34 1 0 0 0
|
| 92 |
+
10 35 1 0 0 0
|
| 93 |
+
11 36 1 0 0 0
|
| 94 |
+
12 37 1 0 0 0
|
| 95 |
+
13 38 1 0 0 0
|
| 96 |
+
13 39 1 0 0 0
|
| 97 |
+
14 40 1 0 0 0
|
| 98 |
+
14 41 1 0 0 0
|
| 99 |
+
15 42 1 0 0 0
|
| 100 |
+
15 43 1 0 0 0
|
| 101 |
+
16 44 1 0 0 0
|
| 102 |
+
16 45 1 0 0 0
|
| 103 |
+
17 46 1 0 0 0
|
| 104 |
+
17 47 1 0 0 0
|
| 105 |
+
18 48 1 0 0 0
|
| 106 |
+
18 49 1 0 0 0
|
| 107 |
+
19 50 1 0 0 0
|
| 108 |
+
19 51 1 0 0 0
|
| 109 |
+
20 52 1 0 0 0
|
| 110 |
+
20 53 1 0 0 0
|
| 111 |
+
20 54 1 0 0 0
|
| 112 |
+
M END
|
| 113 |
+
$$$$
|
1gni/1gni_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gni/1gni_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1k1j/1k1j_ligand.mol2
ADDED
|
@@ -0,0 +1,155 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1k1j_ligand
|
| 7 |
+
68 71 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C65 -3.0350 5.6090 20.2470 C.ar 1 FD2 -0.0390
|
| 14 |
+
2 C66 -3.6800 6.8610 20.1780 C.ar 1 FD2 -0.0549
|
| 15 |
+
3 C64 -1.6740 5.5160 19.8930 C.ar 1 FD2 -0.0601
|
| 16 |
+
4 C63 -0.9650 6.6510 19.4760 C.ar 1 FD2 -0.0686
|
| 17 |
+
5 C62 -1.6110 7.8990 19.4040 C.ar 1 FD2 -0.0635
|
| 18 |
+
6 C61 -2.9750 8.0140 19.7580 C.ar 1 FD2 0.0192
|
| 19 |
+
7 C25 -3.6690 9.3600 19.6700 C.cat 1 FD2 0.2340
|
| 20 |
+
8 N43 -2.9760 10.4020 19.2870 N.pl3 1 FD2 -0.2722
|
| 21 |
+
9 N54 -4.9510 9.4660 19.9690 N.pl3 1 FD2 -0.2722
|
| 22 |
+
10 C34 -3.8050 4.3610 20.7070 C.3 1 FD2 0.0179
|
| 23 |
+
11 C31 -3.7930 4.1530 22.2540 C.3 1 FD2 0.1358
|
| 24 |
+
12 C35 -2.4690 4.5140 22.9040 C.2 1 FD2 0.2023
|
| 25 |
+
13 O36 -2.4170 5.6590 23.3450 O.2 1 FD2 -0.3946
|
| 26 |
+
14 N81 -1.4140 3.6780 23.0210 N.am 1 FD2 -0.2712
|
| 27 |
+
15 C71 -1.5090 2.3460 22.4450 C.3 1 FD2 0.0363
|
| 28 |
+
16 C72 -1.0240 1.3160 23.4920 C.3 1 FD2 -0.0114
|
| 29 |
+
17 C74 0.3360 3.1580 24.6370 C.3 1 FD2 -0.0114
|
| 30 |
+
18 C75 -0.1640 4.1730 23.5710 C.3 1 FD2 0.0363
|
| 31 |
+
19 C40 0.3750 1.7080 24.0550 C.3 1 FD2 0.0637
|
| 32 |
+
20 C48 0.7960 0.8060 25.0540 C.2 1 FD2 0.2367
|
| 33 |
+
21 O49 0.1850 -0.1870 25.4370 O.2 1 FD2 -0.3701
|
| 34 |
+
22 O55 1.9990 1.1680 25.5360 O.3 1 FD2 -0.2800
|
| 35 |
+
23 C99 2.1760 0.9340 26.9510 C.3 1 FD2 0.0658
|
| 36 |
+
24 N29 -4.8630 4.9280 22.8860 N.am 1 FD2 -0.2235
|
| 37 |
+
25 S12 -5.7780 4.2560 24.1930 S.o2 1 FD2 0.0706
|
| 38 |
+
26 O32 -6.7940 5.2050 24.5670 O.2 1 FD2 -0.1501
|
| 39 |
+
27 O33 -6.1130 2.9050 23.9020 O.2 1 FD2 -0.1501
|
| 40 |
+
28 C2 -4.5700 4.2890 25.4220 C.ar 1 FD2 0.1089
|
| 41 |
+
29 C3 -4.2840 5.5260 26.0170 C.ar 1 FD2 -0.0345
|
| 42 |
+
30 C4 -3.3060 5.6250 27.0190 C.ar 1 FD2 -0.0522
|
| 43 |
+
31 C9 -2.8900 3.2070 26.8370 C.ar 1 FD2 -0.0160
|
| 44 |
+
32 C10 -2.6000 4.4590 27.4390 C.ar 1 FD2 -0.0178
|
| 45 |
+
33 C1 -3.8950 3.1320 25.8170 C.ar 1 FD2 -0.0274
|
| 46 |
+
34 C5 -1.6050 4.5230 28.4600 C.ar 1 FD2 -0.0540
|
| 47 |
+
35 C6 -0.9040 3.3530 28.8800 C.ar 1 FD2 -0.0612
|
| 48 |
+
36 C7 -1.2080 2.1070 28.2660 C.ar 1 FD2 -0.0612
|
| 49 |
+
37 C8 -2.1910 2.0370 27.2620 C.ar 1 FD2 -0.0540
|
| 50 |
+
38 H1 -4.7264 6.9411 20.4494 H 1 FD2 0.0556
|
| 51 |
+
39 H2 -1.1706 4.5573 19.9437 H 1 FD2 0.0557
|
| 52 |
+
40 H3 0.0822 6.5672 19.2087 H 1 FD2 0.0599
|
| 53 |
+
41 H4 -1.0617 8.7742 19.0764 H 1 FD2 0.0559
|
| 54 |
+
42 H5 -3.4281 11.3251 19.2206 H 1 FD2 0.3181
|
| 55 |
+
43 H6 -1.9785 10.2990 19.0520 H 1 FD2 0.3181
|
| 56 |
+
44 H7 -5.4804 8.6348 20.2687 H 1 FD2 0.3181
|
| 57 |
+
45 H8 -5.4215 10.3799 19.9025 H 1 FD2 0.3181
|
| 58 |
+
46 H9 -3.3503 3.4781 20.2341 H 1 FD2 0.0469
|
| 59 |
+
47 H10 -4.8501 4.4562 20.3773 H 1 FD2 0.0469
|
| 60 |
+
48 H11 -3.9799 3.0859 22.4446 H 1 FD2 0.0777
|
| 61 |
+
49 H12 -0.8773 2.2856 21.5465 H 1 FD2 0.0524
|
| 62 |
+
50 H13 -2.5537 2.1338 22.1738 H 1 FD2 0.0524
|
| 63 |
+
51 H14 -0.9562 0.3258 23.0178 H 1 FD2 0.0313
|
| 64 |
+
52 H15 -1.7469 1.2773 24.3202 H 1 FD2 0.0313
|
| 65 |
+
53 H16 1.3483 3.4438 24.9588 H 1 FD2 0.0313
|
| 66 |
+
54 H17 -0.3437 3.1804 25.5016 H 1 FD2 0.0313
|
| 67 |
+
55 H18 -0.3267 5.1547 24.0397 H 1 FD2 0.0524
|
| 68 |
+
56 H19 0.5831 4.2687 22.7693 H 1 FD2 0.0524
|
| 69 |
+
57 H20 1.1018 1.6786 23.2298 H 1 FD2 0.0555
|
| 70 |
+
58 H21 3.1827 1.2585 27.2532 H 1 FD2 0.0577
|
| 71 |
+
59 H22 2.0577 -0.1389 27.1629 H 1 FD2 0.0577
|
| 72 |
+
60 H23 1.4225 1.5043 27.5141 H 1 FD2 0.0577
|
| 73 |
+
61 H24 -5.0664 5.8514 22.5604 H 1 FD2 0.1708
|
| 74 |
+
62 H25 -4.8221 6.4123 25.7009 H 1 FD2 0.0637
|
| 75 |
+
63 H26 -3.0878 6.5851 27.4724 H 1 FD2 0.0624
|
| 76 |
+
64 H27 -4.1300 2.1804 25.3541 H 1 FD2 0.0643
|
| 77 |
+
65 H28 -1.3779 5.4759 28.9241 H 1 FD2 0.0624
|
| 78 |
+
66 H29 -0.1501 3.4134 29.6565 H 1 FD2 0.0618
|
| 79 |
+
67 H30 -0.6817 1.2100 28.5719 H 1 FD2 0.0618
|
| 80 |
+
68 H31 -2.4209 1.0814 26.8048 H 1 FD2 0.0624
|
| 81 |
+
@<TRIPOS>BOND
|
| 82 |
+
1 1 10 1
|
| 83 |
+
2 1 3 ar
|
| 84 |
+
3 1 2 ar
|
| 85 |
+
4 2 6 ar
|
| 86 |
+
5 6 7 1
|
| 87 |
+
6 6 5 ar
|
| 88 |
+
7 5 4 ar
|
| 89 |
+
8 4 3 ar
|
| 90 |
+
9 7 9 ar
|
| 91 |
+
10 7 8 ar
|
| 92 |
+
11 10 11 1
|
| 93 |
+
12 11 24 1
|
| 94 |
+
13 11 12 1
|
| 95 |
+
14 12 14 am
|
| 96 |
+
15 12 13 2
|
| 97 |
+
16 14 18 1
|
| 98 |
+
17 14 15 1
|
| 99 |
+
18 15 16 1
|
| 100 |
+
19 16 19 1
|
| 101 |
+
20 19 17 1
|
| 102 |
+
21 19 20 1
|
| 103 |
+
22 20 22 1
|
| 104 |
+
23 20 21 2
|
| 105 |
+
24 22 23 1
|
| 106 |
+
25 17 18 1
|
| 107 |
+
26 24 25 am
|
| 108 |
+
27 25 28 1
|
| 109 |
+
28 25 27 2
|
| 110 |
+
29 25 26 2
|
| 111 |
+
30 28 33 ar
|
| 112 |
+
31 28 29 ar
|
| 113 |
+
32 29 30 ar
|
| 114 |
+
33 30 32 ar
|
| 115 |
+
34 32 31 ar
|
| 116 |
+
35 32 34 ar
|
| 117 |
+
36 34 35 ar
|
| 118 |
+
37 35 36 ar
|
| 119 |
+
38 36 37 ar
|
| 120 |
+
39 37 31 ar
|
| 121 |
+
40 31 33 ar
|
| 122 |
+
41 2 38 1
|
| 123 |
+
42 3 39 1
|
| 124 |
+
43 4 40 1
|
| 125 |
+
44 5 41 1
|
| 126 |
+
45 8 42 1
|
| 127 |
+
46 8 43 1
|
| 128 |
+
47 9 44 1
|
| 129 |
+
48 9 45 1
|
| 130 |
+
49 10 46 1
|
| 131 |
+
50 10 47 1
|
| 132 |
+
51 11 48 1
|
| 133 |
+
52 15 49 1
|
| 134 |
+
53 15 50 1
|
| 135 |
+
54 16 51 1
|
| 136 |
+
55 16 52 1
|
| 137 |
+
56 17 53 1
|
| 138 |
+
57 17 54 1
|
| 139 |
+
58 18 55 1
|
| 140 |
+
59 18 56 1
|
| 141 |
+
60 19 57 1
|
| 142 |
+
61 23 58 1
|
| 143 |
+
62 23 59 1
|
| 144 |
+
63 23 60 1
|
| 145 |
+
64 24 61 1
|
| 146 |
+
65 29 62 1
|
| 147 |
+
66 30 63 1
|
| 148 |
+
67 33 64 1
|
| 149 |
+
68 34 65 1
|
| 150 |
+
69 35 66 1
|
| 151 |
+
70 36 67 1
|
| 152 |
+
71 37 68 1
|
| 153 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 154 |
+
1 FD2 1
|
| 155 |
+
|
1k1j/1k1j_ligand.sdf
ADDED
|
@@ -0,0 +1,143 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
|
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|
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|
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|
|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1k1j_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
67 70 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-3.0350 5.6090 20.2470 C 0 0 0 0 0
|
| 6 |
+
-3.6800 6.8610 20.1780 C 0 0 0 0 0
|
| 7 |
+
-1.6740 5.5160 19.8930 C 0 0 0 0 0
|
| 8 |
+
-0.9650 6.6510 19.4760 C 0 0 0 0 0
|
| 9 |
+
-1.6110 7.8990 19.4040 C 0 0 0 0 0
|
| 10 |
+
-2.9750 8.0140 19.7580 C 0 0 0 0 0
|
| 11 |
+
-3.6690 9.3600 19.6700 C 0 0 0 0 0
|
| 12 |
+
-2.9760 10.4020 19.2870 N 0 0 0 0 0
|
| 13 |
+
-4.9510 9.4660 19.9690 N 0 0 0 0 0
|
| 14 |
+
-3.8050 4.3610 20.7070 C 0 0 0 0 0
|
| 15 |
+
-3.7930 4.1530 22.2540 C 0 0 0 0 0
|
| 16 |
+
-2.4690 4.5140 22.9040 C 0 0 0 0 0
|
| 17 |
+
-2.4170 5.6590 23.3450 O 0 0 0 0 0
|
| 18 |
+
-1.4140 3.6780 23.0210 N 0 0 0 0 0
|
| 19 |
+
-1.5090 2.3460 22.4450 C 0 0 0 0 0
|
| 20 |
+
-1.0240 1.3160 23.4920 C 0 0 0 0 0
|
| 21 |
+
0.3360 3.1580 24.6370 C 0 0 0 0 0
|
| 22 |
+
-0.1640 4.1730 23.5710 C 0 0 0 0 0
|
| 23 |
+
0.3750 1.7080 24.0550 C 0 0 0 0 0
|
| 24 |
+
0.7960 0.8060 25.0540 C 0 0 0 0 0
|
| 25 |
+
0.1850 -0.1870 25.4370 O 0 0 0 0 0
|
| 26 |
+
1.9990 1.1680 25.5360 O 0 0 0 0 0
|
| 27 |
+
2.1760 0.9340 26.9510 C 0 0 0 0 0
|
| 28 |
+
-4.8630 4.9280 22.8860 N 0 0 0 0 0
|
| 29 |
+
-5.7780 4.2560 24.1930 S 0 0 0 0 0
|
| 30 |
+
-6.7940 5.2050 24.5670 O 0 0 0 0 0
|
| 31 |
+
-6.1130 2.9050 23.9020 O 0 0 0 0 0
|
| 32 |
+
-4.5700 4.2890 25.4220 C 0 0 0 0 0
|
| 33 |
+
-4.2840 5.5260 26.0170 C 0 0 0 0 0
|
| 34 |
+
-3.3060 5.6250 27.0190 C 0 0 0 0 0
|
| 35 |
+
-2.8900 3.2070 26.8370 C 0 0 0 0 0
|
| 36 |
+
-2.6000 4.4590 27.4390 C 0 0 0 0 0
|
| 37 |
+
-3.8950 3.1320 25.8170 C 0 0 0 0 0
|
| 38 |
+
-1.6050 4.5230 28.4600 C 0 0 0 0 0
|
| 39 |
+
-0.9040 3.3530 28.8800 C 0 0 0 0 0
|
| 40 |
+
-1.2080 2.1070 28.2660 C 0 0 0 0 0
|
| 41 |
+
-2.1910 2.0370 27.2620 C 0 0 0 0 0
|
| 42 |
+
-4.7322 6.9416 20.4509 H 0 0 0 0 0
|
| 43 |
+
-1.1678 4.5520 19.9440 H 0 0 0 0 0
|
| 44 |
+
0.0880 6.5668 19.2072 H 0 0 0 0 0
|
| 45 |
+
-1.0586 8.7790 19.0746 H 0 0 0 0 0
|
| 46 |
+
-3.4252 11.3150 19.2154 H 0 0 0 0 0
|
| 47 |
+
-5.4169 10.3710 19.9032 H 0 0 0 0 0
|
| 48 |
+
-5.4752 8.6429 20.2658 H 0 0 0 0 0
|
| 49 |
+
-3.3205 3.4943 20.2573 H 0 0 0 0 0
|
| 50 |
+
-4.8439 4.4878 20.4027 H 0 0 0 0 0
|
| 51 |
+
-3.9514 3.0859 22.4098 H 0 0 0 0 0
|
| 52 |
+
-0.8887 2.2846 21.5508 H 0 0 0 0 0
|
| 53 |
+
-2.5423 2.1349 22.1696 H 0 0 0 0 0
|
| 54 |
+
-0.9470 0.3401 23.0127 H 0 0 0 0 0
|
| 55 |
+
-1.7379 1.2918 24.3153 H 0 0 0 0 0
|
| 56 |
+
1.3438 3.4395 24.9422 H 0 0 0 0 0
|
| 57 |
+
-0.3484 3.1761 25.4851 H 0 0 0 0 0
|
| 58 |
+
-0.3178 5.1503 24.0284 H 0 0 0 0 0
|
| 59 |
+
0.5772 4.2788 22.7788 H 0 0 0 0 0
|
| 60 |
+
1.0889 1.6662 23.2323 H 0 0 0 0 0
|
| 61 |
+
1.4288 1.4995 27.5077 H 0 0 0 0 0
|
| 62 |
+
2.0585 -0.1294 27.1596 H 0 0 0 0 0
|
| 63 |
+
3.1738 1.2560 27.2492 H 0 0 0 0 0
|
| 64 |
+
-5.0705 5.8699 22.5539 H 0 0 0 0 0
|
| 65 |
+
-4.8251 6.4172 25.6991 H 0 0 0 0 0
|
| 66 |
+
-3.0866 6.5904 27.4749 H 0 0 0 0 0
|
| 67 |
+
-4.1313 2.1752 25.3515 H 0 0 0 0 0
|
| 68 |
+
-1.3767 5.4812 28.9267 H 0 0 0 0 0
|
| 69 |
+
-0.1459 3.4137 29.6608 H 0 0 0 0 0
|
| 70 |
+
-0.6788 1.2051 28.5736 H 0 0 0 0 0
|
| 71 |
+
-2.4221 1.0761 26.8022 H 0 0 0 0 0
|
| 72 |
+
1 10 1 0 0 0
|
| 73 |
+
1 3 4 0 0 0
|
| 74 |
+
1 2 4 0 0 0
|
| 75 |
+
2 6 4 0 0 0
|
| 76 |
+
6 7 1 0 0 0
|
| 77 |
+
6 5 4 0 0 0
|
| 78 |
+
5 4 4 0 0 0
|
| 79 |
+
4 3 4 0 0 0
|
| 80 |
+
7 9 1 0 0 0
|
| 81 |
+
7 8 2 0 0 0
|
| 82 |
+
10 11 1 0 0 0
|
| 83 |
+
11 24 1 0 0 0
|
| 84 |
+
11 12 1 0 0 0
|
| 85 |
+
12 14 1 0 0 0
|
| 86 |
+
12 13 2 0 0 0
|
| 87 |
+
14 18 1 0 0 0
|
| 88 |
+
14 15 1 0 0 0
|
| 89 |
+
15 16 1 0 0 0
|
| 90 |
+
16 19 1 0 0 0
|
| 91 |
+
19 17 1 0 0 0
|
| 92 |
+
19 20 1 0 0 0
|
| 93 |
+
20 22 1 0 0 0
|
| 94 |
+
20 21 2 0 0 0
|
| 95 |
+
22 23 1 0 0 0
|
| 96 |
+
17 18 1 0 0 0
|
| 97 |
+
24 25 1 0 0 0
|
| 98 |
+
25 28 1 0 0 0
|
| 99 |
+
25 27 2 0 0 0
|
| 100 |
+
25 26 2 0 0 0
|
| 101 |
+
28 33 4 0 0 0
|
| 102 |
+
28 29 4 0 0 0
|
| 103 |
+
29 30 4 0 0 0
|
| 104 |
+
30 32 4 0 0 0
|
| 105 |
+
32 31 4 0 0 0
|
| 106 |
+
32 34 4 0 0 0
|
| 107 |
+
34 35 4 0 0 0
|
| 108 |
+
35 36 4 0 0 0
|
| 109 |
+
36 37 4 0 0 0
|
| 110 |
+
37 31 4 0 0 0
|
| 111 |
+
31 33 4 0 0 0
|
| 112 |
+
2 38 1 0 0 0
|
| 113 |
+
3 39 1 0 0 0
|
| 114 |
+
4 40 1 0 0 0
|
| 115 |
+
5 41 1 0 0 0
|
| 116 |
+
8 42 1 0 0 0
|
| 117 |
+
9 43 1 0 0 0
|
| 118 |
+
9 44 1 0 0 0
|
| 119 |
+
10 45 1 0 0 0
|
| 120 |
+
10 46 1 0 0 0
|
| 121 |
+
11 47 1 0 0 0
|
| 122 |
+
15 48 1 0 0 0
|
| 123 |
+
15 49 1 0 0 0
|
| 124 |
+
16 50 1 0 0 0
|
| 125 |
+
16 51 1 0 0 0
|
| 126 |
+
17 52 1 0 0 0
|
| 127 |
+
17 53 1 0 0 0
|
| 128 |
+
18 54 1 0 0 0
|
| 129 |
+
18 55 1 0 0 0
|
| 130 |
+
19 56 1 0 0 0
|
| 131 |
+
23 57 1 0 0 0
|
| 132 |
+
23 58 1 0 0 0
|
| 133 |
+
23 59 1 0 0 0
|
| 134 |
+
24 60 1 0 0 0
|
| 135 |
+
29 61 1 0 0 0
|
| 136 |
+
30 62 1 0 0 0
|
| 137 |
+
33 63 1 0 0 0
|
| 138 |
+
34 64 1 0 0 0
|
| 139 |
+
35 65 1 0 0 0
|
| 140 |
+
36 66 1 0 0 0
|
| 141 |
+
37 67 1 0 0 0
|
| 142 |
+
M END
|
| 143 |
+
$$$$
|
1k1j/1k1j_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1k1j/1k1j_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1r6n/1r6n_ligand.mol2
ADDED
|
@@ -0,0 +1,139 @@
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:51 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1r6n_ligand
|
| 7 |
+
59 64 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 54.7630 3.8610 2.5120 C.3 1 434 0.1119
|
| 14 |
+
2 C2 55.2350 3.4530 3.9070 C.ar 1 434 -0.0115
|
| 15 |
+
3 O4 55.5630 4.8430 1.8900 O.3 1 434 -0.3468
|
| 16 |
+
4 C5 54.8600 5.3850 0.7940 C.3 1 434 0.2176
|
| 17 |
+
5 C6 53.4010 4.9130 0.8810 C.3 1 434 0.0767
|
| 18 |
+
6 C8 53.3280 4.3140 2.2830 C.3 1 434 0.1053
|
| 19 |
+
7 C10 55.0730 6.8780 0.8480 C.2 1 434 0.1938
|
| 20 |
+
8 C11 55.8120 7.2950 -0.3460 C.ar 1 434 0.0467
|
| 21 |
+
9 O12 54.6930 7.6050 1.7350 O.2 1 434 -0.3213
|
| 22 |
+
10 C13 55.5260 4.9840 -0.4890 C.2 1 434 0.1900
|
| 23 |
+
11 O14 55.5990 3.8600 -0.9290 O.2 1 434 -0.3256
|
| 24 |
+
12 C15 56.2280 8.5840 -0.7190 C.ar 1 434 -0.0364
|
| 25 |
+
13 C17 56.9380 8.7080 -1.9340 C.ar 1 434 -0.0351
|
| 26 |
+
14 C19 57.2090 7.5780 -2.7280 C.ar 1 434 -0.0496
|
| 27 |
+
15 C21 56.7760 6.2900 -2.3270 C.ar 1 434 -0.0443
|
| 28 |
+
16 C23 56.0790 6.1840 -1.1300 C.ar 1 434 0.0460
|
| 29 |
+
17 C24 52.3520 5.9820 0.5590 C.2 1 434 0.0414
|
| 30 |
+
18 O25 51.2460 6.0980 1.0650 O.co2 1 434 -0.5688
|
| 31 |
+
19 O26 52.7500 6.7900 -0.3170 O.co2 1 434 -0.5688
|
| 32 |
+
20 C28 52.6750 4.9780 3.4900 C.2 1 434 0.2132
|
| 33 |
+
21 O29 51.8010 4.5150 4.1830 O.2 1 434 -0.3840
|
| 34 |
+
22 N30 53.2620 6.2280 3.6630 N.am 1 434 -0.2338
|
| 35 |
+
23 C31 52.7790 7.1330 4.6580 C.ar 1 434 0.0655
|
| 36 |
+
24 C33 52.9590 8.5110 4.5000 C.ar 1 434 -0.0423
|
| 37 |
+
25 C35 52.5000 9.4070 5.4570 C.ar 1 434 -0.0695
|
| 38 |
+
26 C37 51.8440 8.9530 6.6110 C.ar 1 434 -0.0220
|
| 39 |
+
27 C38 51.3800 9.9250 7.6070 C.2 1 434 0.0866
|
| 40 |
+
28 C39 51.6600 7.5650 6.7720 C.ar 1 434 -0.0695
|
| 41 |
+
29 C41 52.1200 6.6700 5.8100 C.ar 1 434 -0.0423
|
| 42 |
+
30 N43 50.1720 10.5690 7.4770 N.2 1 434 -0.1808
|
| 43 |
+
31 N44 50.0220 11.3840 8.5190 N.2 1 434 -0.1306
|
| 44 |
+
32 S46 51.2400 11.4140 9.6270 S.3 1 434 0.0625
|
| 45 |
+
33 C47 52.0980 10.2730 8.7360 C.2 1 434 0.0494
|
| 46 |
+
34 C49 56.5740 3.6450 4.3040 C.ar 1 434 -0.0433
|
| 47 |
+
35 C51 57.0150 3.2700 5.5830 C.ar 1 434 0.0478
|
| 48 |
+
36 C53 56.0970 2.6830 6.5090 C.ar 1 434 0.0469
|
| 49 |
+
37 C55 54.7620 2.4910 6.1140 C.ar 1 434 -0.0540
|
| 50 |
+
38 C57 54.3340 2.8680 4.8360 C.ar 1 434 -0.0570
|
| 51 |
+
39 C3 57.4210 10.0920 -2.3970 C.3 1 434 -0.0276
|
| 52 |
+
40 CL1 58.6500 3.5330 5.9850 Cl 1 434 -0.0718
|
| 53 |
+
41 CL2 56.5820 2.2110 8.0870 Cl 1 434 -0.0764
|
| 54 |
+
42 H1 54.8765 2.9409 1.9199 H 1 434 0.0786
|
| 55 |
+
43 H2 53.2487 4.1063 0.1488 H 1 434 0.0499
|
| 56 |
+
44 H3 52.7236 3.4029 2.1621 H 1 434 0.0611
|
| 57 |
+
45 H4 56.0131 9.4476 -0.1001 H 1 434 0.0623
|
| 58 |
+
46 H5 57.7553 7.6945 -3.6570 H 1 434 0.0610
|
| 59 |
+
47 H6 56.9818 5.4160 -2.9343 H 1 434 0.0667
|
| 60 |
+
48 H7 54.0316 6.4963 3.0836 H 1 434 0.2262
|
| 61 |
+
49 H8 53.4644 8.8855 3.6172 H 1 434 0.0502
|
| 62 |
+
50 H9 52.6506 10.4704 5.3103 H 1 434 0.0559
|
| 63 |
+
51 H10 51.1547 7.1902 7.6547 H 1 434 0.0559
|
| 64 |
+
52 H11 51.9685 5.6059 5.9507 H 1 434 0.0502
|
| 65 |
+
53 H12 53.0723 9.8695 9.0078 H 1 434 0.1000
|
| 66 |
+
54 H13 57.2762 4.0905 3.6087 H 1 434 0.0563
|
| 67 |
+
55 H14 54.0564 2.0463 6.8064 H 1 434 0.0606
|
| 68 |
+
56 H15 53.2999 2.7113 4.5511 H 1 434 0.0560
|
| 69 |
+
57 H16 57.1224 10.8505 -1.6584 H 1 434 0.0403
|
| 70 |
+
58 H17 56.9694 10.3310 -3.3711 H 1 434 0.0403
|
| 71 |
+
59 H18 58.5168 10.0849 -2.4927 H 1 434 0.0403
|
| 72 |
+
@<TRIPOS>BOND
|
| 73 |
+
1 1 2 1
|
| 74 |
+
2 1 3 1
|
| 75 |
+
3 1 6 1
|
| 76 |
+
4 2 34 ar
|
| 77 |
+
5 2 38 ar
|
| 78 |
+
6 3 4 1
|
| 79 |
+
7 4 5 1
|
| 80 |
+
8 4 7 1
|
| 81 |
+
9 4 10 1
|
| 82 |
+
10 5 6 1
|
| 83 |
+
11 5 17 1
|
| 84 |
+
12 6 20 1
|
| 85 |
+
13 7 8 1
|
| 86 |
+
14 7 9 2
|
| 87 |
+
15 8 12 ar
|
| 88 |
+
16 8 16 ar
|
| 89 |
+
17 10 11 2
|
| 90 |
+
18 10 16 1
|
| 91 |
+
19 12 13 ar
|
| 92 |
+
20 13 14 ar
|
| 93 |
+
21 13 39 1
|
| 94 |
+
22 14 15 ar
|
| 95 |
+
23 15 16 ar
|
| 96 |
+
24 17 18 ar
|
| 97 |
+
25 17 19 ar
|
| 98 |
+
26 20 21 2
|
| 99 |
+
27 20 22 am
|
| 100 |
+
28 22 23 1
|
| 101 |
+
29 23 24 ar
|
| 102 |
+
30 23 29 ar
|
| 103 |
+
31 24 25 ar
|
| 104 |
+
32 25 26 ar
|
| 105 |
+
33 26 27 1
|
| 106 |
+
34 26 28 ar
|
| 107 |
+
35 27 30 1
|
| 108 |
+
36 27 33 2
|
| 109 |
+
37 28 29 ar
|
| 110 |
+
38 30 31 2
|
| 111 |
+
39 31 32 1
|
| 112 |
+
40 32 33 1
|
| 113 |
+
41 34 35 ar
|
| 114 |
+
42 35 36 ar
|
| 115 |
+
43 35 40 1
|
| 116 |
+
44 36 37 ar
|
| 117 |
+
45 36 41 1
|
| 118 |
+
46 37 38 ar
|
| 119 |
+
47 1 42 1
|
| 120 |
+
48 5 43 1
|
| 121 |
+
49 6 44 1
|
| 122 |
+
50 12 45 1
|
| 123 |
+
51 14 46 1
|
| 124 |
+
52 15 47 1
|
| 125 |
+
53 22 48 1
|
| 126 |
+
54 24 49 1
|
| 127 |
+
55 25 50 1
|
| 128 |
+
56 28 51 1
|
| 129 |
+
57 29 52 1
|
| 130 |
+
58 33 53 1
|
| 131 |
+
59 34 54 1
|
| 132 |
+
60 37 55 1
|
| 133 |
+
61 38 56 1
|
| 134 |
+
62 39 57 1
|
| 135 |
+
63 39 58 1
|
| 136 |
+
64 39 59 1
|
| 137 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 138 |
+
1 434 1
|
| 139 |
+
|
1r6n/1r6n_ligand.sdf
ADDED
|
@@ -0,0 +1,131 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1r6n_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
60 65 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
54.7630 3.8610 2.5120 C 0 0 0 0 0
|
| 6 |
+
55.2350 3.4530 3.9070 C 0 0 0 0 0
|
| 7 |
+
55.5630 4.8430 1.8900 O 0 0 0 0 0
|
| 8 |
+
54.8600 5.3850 0.7940 C 0 0 0 0 0
|
| 9 |
+
53.4010 4.9130 0.8810 C 0 0 0 0 0
|
| 10 |
+
53.3280 4.3140 2.2830 C 0 0 0 0 0
|
| 11 |
+
55.0730 6.8780 0.8480 C 0 0 0 0 0
|
| 12 |
+
55.8120 7.2950 -0.3460 C 0 0 0 0 0
|
| 13 |
+
54.6930 7.6050 1.7350 O 0 0 0 0 0
|
| 14 |
+
55.5260 4.9840 -0.4890 C 0 0 0 0 0
|
| 15 |
+
55.5990 3.8600 -0.9290 O 0 0 0 0 0
|
| 16 |
+
56.2280 8.5840 -0.7190 C 0 0 0 0 0
|
| 17 |
+
56.9380 8.7080 -1.9340 C 0 0 0 0 0
|
| 18 |
+
57.2090 7.5780 -2.7280 C 0 0 0 0 0
|
| 19 |
+
56.7760 6.2900 -2.3270 C 0 0 0 0 0
|
| 20 |
+
56.0790 6.1840 -1.1300 C 0 0 0 0 0
|
| 21 |
+
52.3520 5.9820 0.5590 C 0 0 0 0 0
|
| 22 |
+
51.2460 6.0980 1.0650 O 0 0 0 0 0
|
| 23 |
+
52.7500 6.7900 -0.3170 O 0 0 0 0 0
|
| 24 |
+
52.6750 4.9780 3.4900 C 0 0 0 0 0
|
| 25 |
+
51.8010 4.5150 4.1830 O 0 0 0 0 0
|
| 26 |
+
53.2620 6.2280 3.6630 N 0 0 0 0 0
|
| 27 |
+
52.7790 7.1330 4.6580 C 0 0 0 0 0
|
| 28 |
+
52.9590 8.5110 4.5000 C 0 0 0 0 0
|
| 29 |
+
52.5000 9.4070 5.4570 C 0 0 0 0 0
|
| 30 |
+
51.8440 8.9530 6.6110 C 0 0 0 0 0
|
| 31 |
+
51.3800 9.9250 7.6070 C 0 0 0 0 0
|
| 32 |
+
51.6600 7.5650 6.7720 C 0 0 0 0 0
|
| 33 |
+
52.1200 6.6700 5.8100 C 0 0 0 0 0
|
| 34 |
+
50.1720 10.5690 7.4770 N 0 0 0 0 0
|
| 35 |
+
50.0220 11.3840 8.5190 N 0 0 0 0 0
|
| 36 |
+
51.2400 11.4140 9.6270 S 0 0 0 0 0
|
| 37 |
+
52.0980 10.2730 8.7360 C 0 0 0 0 0
|
| 38 |
+
56.5740 3.6450 4.3040 C 0 0 0 0 0
|
| 39 |
+
57.0150 3.2700 5.5830 C 0 0 0 0 0
|
| 40 |
+
56.0970 2.6830 6.5090 C 0 0 0 0 0
|
| 41 |
+
54.7620 2.4910 6.1140 C 0 0 0 0 0
|
| 42 |
+
54.3340 2.8680 4.8360 C 0 0 0 0 0
|
| 43 |
+
57.4210 10.0920 -2.3970 C 0 0 0 0 0
|
| 44 |
+
58.6500 3.5330 5.9850 Cl 0 0 0 0 0
|
| 45 |
+
56.5820 2.2110 8.0870 Cl 0 0 0 0 0
|
| 46 |
+
54.8545 2.8678 2.0723 H 0 0 0 0 0
|
| 47 |
+
53.1436 4.1875 0.1093 H 0 0 0 0 0
|
| 48 |
+
52.5355 3.5664 2.2497 H 0 0 0 0 0
|
| 49 |
+
56.0119 9.4524 -0.0967 H 0 0 0 0 0
|
| 50 |
+
57.7583 7.6951 -3.6622 H 0 0 0 0 0
|
| 51 |
+
56.9830 5.4111 -2.9376 H 0 0 0 0 0
|
| 52 |
+
53.6348 6.5455 -0.5979 H 0 0 0 0 0
|
| 53 |
+
54.0470 6.5017 3.0720 H 0 0 0 0 0
|
| 54 |
+
53.4672 8.8875 3.6123 H 0 0 0 0 0
|
| 55 |
+
52.6514 10.4763 5.3095 H 0 0 0 0 0
|
| 56 |
+
51.1519 7.1881 7.6596 H 0 0 0 0 0
|
| 57 |
+
51.9677 5.6000 5.9515 H 0 0 0 0 0
|
| 58 |
+
53.0732 9.8691 9.0081 H 0 0 0 0 0
|
| 59 |
+
57.2801 4.0930 3.6048 H 0 0 0 0 0
|
| 60 |
+
54.0525 2.0438 6.8103 H 0 0 0 0 0
|
| 61 |
+
53.2942 2.7104 4.5495 H 0 0 0 0 0
|
| 62 |
+
56.5626 10.7522 -2.5210 H 0 0 0 0 0
|
| 63 |
+
58.0963 10.5085 -1.6496 H 0 0 0 0 0
|
| 64 |
+
57.9453 9.9932 -3.3475 H 0 0 0 0 0
|
| 65 |
+
1 2 1 0 0 0
|
| 66 |
+
1 3 1 0 0 0
|
| 67 |
+
1 6 1 0 0 0
|
| 68 |
+
2 34 4 0 0 0
|
| 69 |
+
2 38 4 0 0 0
|
| 70 |
+
3 4 1 0 0 0
|
| 71 |
+
4 5 1 0 0 0
|
| 72 |
+
4 7 1 0 0 0
|
| 73 |
+
4 10 1 0 0 0
|
| 74 |
+
5 6 1 0 0 0
|
| 75 |
+
5 17 1 0 0 0
|
| 76 |
+
6 20 1 0 0 0
|
| 77 |
+
7 8 1 0 0 0
|
| 78 |
+
7 9 2 0 0 0
|
| 79 |
+
8 12 4 0 0 0
|
| 80 |
+
8 16 4 0 0 0
|
| 81 |
+
10 11 2 0 0 0
|
| 82 |
+
10 16 1 0 0 0
|
| 83 |
+
12 13 4 0 0 0
|
| 84 |
+
13 14 4 0 0 0
|
| 85 |
+
13 39 1 0 0 0
|
| 86 |
+
14 15 4 0 0 0
|
| 87 |
+
15 16 4 0 0 0
|
| 88 |
+
17 18 2 0 0 0
|
| 89 |
+
17 19 1 0 0 0
|
| 90 |
+
20 21 2 0 0 0
|
| 91 |
+
20 22 1 0 0 0
|
| 92 |
+
22 23 1 0 0 0
|
| 93 |
+
23 24 4 0 0 0
|
| 94 |
+
23 29 4 0 0 0
|
| 95 |
+
24 25 4 0 0 0
|
| 96 |
+
25 26 4 0 0 0
|
| 97 |
+
26 27 1 0 0 0
|
| 98 |
+
26 28 4 0 0 0
|
| 99 |
+
27 30 4 0 0 0
|
| 100 |
+
27 33 4 0 0 0
|
| 101 |
+
28 29 4 0 0 0
|
| 102 |
+
30 31 4 0 0 0
|
| 103 |
+
31 32 4 0 0 0
|
| 104 |
+
32 33 4 0 0 0
|
| 105 |
+
34 35 4 0 0 0
|
| 106 |
+
35 36 4 0 0 0
|
| 107 |
+
35 40 1 0 0 0
|
| 108 |
+
36 37 4 0 0 0
|
| 109 |
+
36 41 1 0 0 0
|
| 110 |
+
37 38 4 0 0 0
|
| 111 |
+
1 42 1 0 0 0
|
| 112 |
+
5 43 1 0 0 0
|
| 113 |
+
6 44 1 0 0 0
|
| 114 |
+
12 45 1 0 0 0
|
| 115 |
+
14 46 1 0 0 0
|
| 116 |
+
15 47 1 0 0 0
|
| 117 |
+
19 48 1 0 0 0
|
| 118 |
+
22 49 1 0 0 0
|
| 119 |
+
24 50 1 0 0 0
|
| 120 |
+
25 51 1 0 0 0
|
| 121 |
+
28 52 1 0 0 0
|
| 122 |
+
29 53 1 0 0 0
|
| 123 |
+
33 54 1 0 0 0
|
| 124 |
+
34 55 1 0 0 0
|
| 125 |
+
37 56 1 0 0 0
|
| 126 |
+
38 57 1 0 0 0
|
| 127 |
+
39 58 1 0 0 0
|
| 128 |
+
39 59 1 0 0 0
|
| 129 |
+
39 60 1 0 0 0
|
| 130 |
+
M END
|
| 131 |
+
$$$$
|
1r6n/1r6n_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1r6n/1r6n_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1rst/1rst_ligand.mol2
ADDED
|
@@ -0,0 +1,306 @@
|
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|
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|
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|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1rst_ligand
|
| 7 |
+
143 147 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 3.8210 -0.7100 69.2420 N.4 1 ALA 0.2377
|
| 14 |
+
2 CA 4.1630 -1.7340 68.2120 C.3 1 ALA 0.0621
|
| 15 |
+
3 C 5.6700 -1.6580 68.0440 C.2 1 ALA 0.2265
|
| 16 |
+
4 O 6.4020 -2.5000 68.5800 O.2 1 ALA -0.3907
|
| 17 |
+
5 CB 3.4520 -1.4350 66.8680 C.3 1 ALA -0.0040
|
| 18 |
+
6 H1 2.8254 -0.7114 69.3995 H 1 ALA 0.2015
|
| 19 |
+
7 H2 4.1088 0.2005 68.9192 H 1 ALA 0.2015
|
| 20 |
+
8 H3 4.2977 -0.9274 70.1032 H 1 ALA 0.2015
|
| 21 |
+
9 N 6.1150 -0.5940 67.3650 N.am 1 TRP -0.2600
|
| 22 |
+
10 CA 7.5350 -0.3390 67.1090 C.3 1 TRP 0.1353
|
| 23 |
+
11 C 8.3320 -0.3600 68.4380 C.2 1 TRP 0.2052
|
| 24 |
+
12 O 7.8090 0.0100 69.5060 O.2 1 TRP -0.3942
|
| 25 |
+
13 CB 7.6910 0.9850 66.3090 C.3 1 TRP 0.0042
|
| 26 |
+
14 CG 8.2660 2.1570 67.0510 C.2 1 TRP -0.0418
|
| 27 |
+
15 CD1 9.3970 2.8540 66.7230 C.2 1 TRP 0.0167
|
| 28 |
+
16 CD2 7.7750 2.7430 68.2720 C.ar 1 TRP -0.0214
|
| 29 |
+
17 NE1 9.6480 3.8250 67.6680 N.pl3 1 TRP -0.2890
|
| 30 |
+
18 CE2 8.6700 3.7780 68.6280 C.ar 1 TRP 0.0603
|
| 31 |
+
19 CE3 6.6670 2.4860 69.1050 C.ar 1 TRP -0.0747
|
| 32 |
+
20 CZ2 8.4950 4.5590 69.7780 C.ar 1 TRP -0.0443
|
| 33 |
+
21 CZ3 6.4950 3.2600 70.2460 C.ar 1 TRP -0.0792
|
| 34 |
+
22 CH2 7.4050 4.2840 70.5700 C.ar 1 TRP -0.0768
|
| 35 |
+
23 H4 3.8687 -2.7347 68.5612 H 1 ALA 0.1095
|
| 36 |
+
24 H5 3.7230 -2.2050 66.1306 H 1 ALA 0.0310
|
| 37 |
+
25 N 9.5650 -0.8510 68.3780 N.am 1 ARG -0.2636
|
| 38 |
+
26 CA 10.3940 -0.9480 69.5650 C.3 1 ARG 0.1311
|
| 39 |
+
27 C 10.6370 0.3890 70.2310 C.2 1 ARG 0.2040
|
| 40 |
+
28 O 11.2800 1.2740 69.6760 O.2 1 ARG -0.3944
|
| 41 |
+
29 CB 11.7240 -1.6050 69.2340 C.3 1 ARG -0.0092
|
| 42 |
+
30 CG 11.8840 -2.9820 69.8010 C.3 1 ARG -0.0156
|
| 43 |
+
31 CD 11.6240 -2.9940 71.2830 C.3 1 ARG 0.0627
|
| 44 |
+
32 NE 12.0260 -4.2760 71.8590 N.pl3 1 ARG -0.2723
|
| 45 |
+
33 CZ 11.3530 -5.4220 71.7250 C.cat 1 ARG 0.2882
|
| 46 |
+
34 NH1 10.2140 -5.4700 71.0290 N.pl3 1 ARG -0.2849
|
| 47 |
+
35 NH2 11.8360 -6.5360 72.2770 N.pl3 1 ARG -0.2849
|
| 48 |
+
36 H6 3.7657 -0.4474 66.4989 H 1 ALA 0.0310
|
| 49 |
+
37 H7 2.3626 -1.4404 67.0203 H 1 ALA 0.0310
|
| 50 |
+
38 H8 5.4445 0.0600 67.0147 H 1 TRP 0.1886
|
| 51 |
+
39 H9 7.9227 -1.1538 66.4799 H 1 TRP 0.0815
|
| 52 |
+
40 H10 6.6935 1.2759 65.9479 H 1 TRP 0.0397
|
| 53 |
+
41 H11 8.3467 0.7802 65.4499 H 1 TRP 0.0397
|
| 54 |
+
42 N 10.0760 0.5460 71.4160 N.am 1 HIS -0.2625
|
| 55 |
+
43 CA 10.2640 1.7660 72.1670 C.3 1 HIS 0.1371
|
| 56 |
+
44 C 11.7290 1.7600 72.6250 C.2 1 HIS 0.2079
|
| 57 |
+
45 O 12.2650 0.7030 72.9630 O.2 1 HIS -0.3940
|
| 58 |
+
46 CB 9.3170 1.7670 73.3750 C.3 1 HIS 0.0145
|
| 59 |
+
47 CG 9.3660 3.0270 74.1800 C.2 1 HIS -0.0027
|
| 60 |
+
48 ND1 10.3400 3.2690 75.1230 N.2 1 HIS -0.3252
|
| 61 |
+
49 CD2 8.6010 4.1450 74.1310 C.2 1 HIS 0.0291
|
| 62 |
+
50 CE1 10.1800 4.4860 75.6100 C.2 1 HIS 0.0907
|
| 63 |
+
51 NE2 9.1310 5.0380 75.0270 N.pl3 1 HIS -0.2752
|
| 64 |
+
52 H12 10.0101 2.6682 65.8424 H 1 TRP 0.0795
|
| 65 |
+
53 H13 10.4424 4.4806 67.6553 H 1 TRP 0.2216
|
| 66 |
+
54 H14 5.9626 1.6994 68.8599 H 1 TRP 0.0540
|
| 67 |
+
55 N 12.3790 2.9440 72.6880 N.am 1 PRO -0.2497
|
| 68 |
+
56 CA 13.7790 3.0050 73.1170 C.3 1 PRO 0.1338
|
| 69 |
+
57 C 14.0860 2.4610 74.5040 C.2 1 PRO 0.2041
|
| 70 |
+
58 O 15.2300 2.1190 74.7910 O.2 1 PRO -0.3944
|
| 71 |
+
59 CB 14.1380 4.4840 72.9880 C.3 1 PRO -0.0104
|
| 72 |
+
60 CG 12.8170 5.1920 72.9190 C.3 1 PRO -0.0281
|
| 73 |
+
61 CD 11.9310 4.2510 72.1830 C.3 1 PRO 0.0369
|
| 74 |
+
62 N 13.0850 2.4070 75.3820 N.am 1 GLN -0.2636
|
| 75 |
+
63 CA 13.3120 1.8810 76.7270 C.3 1 GLN 0.1330
|
| 76 |
+
64 C 13.7320 0.4260 76.6710 C.2 1 GLN 0.2042
|
| 77 |
+
65 O 14.4930 -0.0400 77.5120 O.2 1 GLN -0.3944
|
| 78 |
+
66 CB 12.0470 1.9840 77.5930 C.3 1 GLN 0.0045
|
| 79 |
+
67 CG 12.2130 1.3930 79.0000 C.3 1 GLN 0.0412
|
| 80 |
+
68 CD 11.0160 1.6200 79.9200 C.2 1 GLN 0.1737
|
| 81 |
+
69 OE1 10.7990 0.8710 80.8820 O.2 1 GLN -0.3973
|
| 82 |
+
70 NE2 10.2190 2.6260 79.6120 N.am 1 GLN -0.3009
|
| 83 |
+
71 H15 9.1917 5.3492 70.0334 H 1 TRP 0.0541
|
| 84 |
+
72 H16 5.6480 3.0726 70.8960 H 1 TRP 0.0510
|
| 85 |
+
73 H17 7.2423 4.8708 71.4668 H 1 TRP 0.0530
|
| 86 |
+
74 N 13.2400 -0.2780 75.6560 N.am 1 PHE -0.2619
|
| 87 |
+
75 CA 13.4910 -1.6950 75.5020 C.3 1 PHE 0.1404
|
| 88 |
+
76 C 14.4740 -2.0830 74.4000 C.2 1 PHE 0.2058
|
| 89 |
+
77 O 14.3910 -3.1710 73.8360 O.2 1 PHE -0.3942
|
| 90 |
+
78 CB 12.1470 -2.4050 75.3460 C.3 1 PHE 0.0214
|
| 91 |
+
79 CG 11.1340 -1.9810 76.3810 C.ar 1 PHE -0.0386
|
| 92 |
+
80 CD1 11.1880 -2.4860 77.6770 C.ar 1 PHE -0.0601
|
| 93 |
+
81 CD2 10.1770 -1.0200 76.0780 C.ar 1 PHE -0.0601
|
| 94 |
+
82 CE1 10.3070 -2.0300 78.6560 C.ar 1 PHE -0.0686
|
| 95 |
+
83 CE2 9.3000 -0.5620 77.0410 C.ar 1 PHE -0.0686
|
| 96 |
+
84 CZ 9.3660 -1.0700 78.3370 C.ar 1 PHE -0.0687
|
| 97 |
+
85 H18 9.9284 -1.1593 67.4989 H 1 ARG 0.1883
|
| 98 |
+
86 N 15.4600 -1.2230 74.1720 N.am 1 GLY -0.2663
|
| 99 |
+
87 CA 16.4660 -1.4910 73.1650 C.3 1 GLY 0.1201
|
| 100 |
+
88 C 15.9860 -1.1240 71.7800 C.2 1 GLY 0.2000
|
| 101 |
+
89 O 16.6010 -1.5180 70.7880 O.2 1 GLY -0.3947
|
| 102 |
+
90 H19 9.8652 -1.5886 70.2861 H 1 ARG 0.0800
|
| 103 |
+
91 N 14.8610 -0.4120 71.7190 N.am 1 GLY -0.2724
|
| 104 |
+
92 CA 14.3060 0.0190 70.4540 C.3 1 GLY 0.0833
|
| 105 |
+
93 C 14.9950 1.2550 69.8880 C.2 1 GLY 0.0570
|
| 106 |
+
94 O 14.6660 1.6190 68.7420 O.co2 1 GLY -0.5669
|
| 107 |
+
95 OXT 15.8650 1.8600 70.5700 O.co2 1 GLY -0.5669
|
| 108 |
+
96 H20 12.5306 -0.9718 69.6320 H 1 ARG 0.0313
|
| 109 |
+
97 H21 11.8145 -1.6695 68.1396 H 1 ARG 0.0313
|
| 110 |
+
98 H22 12.9106 -3.3299 69.6141 H 1 ARG 0.0301
|
| 111 |
+
99 H23 11.1717 -3.6587 69.3063 H 1 ARG 0.0301
|
| 112 |
+
100 H24 10.5507 -2.8356 71.4643 H 1 ARG 0.0689
|
| 113 |
+
101 H25 12.1994 -2.1862 71.7588 H 1 ARG 0.0689
|
| 114 |
+
102 H26 12.8954 -4.2973 72.4109 H 1 ARG 0.2642
|
| 115 |
+
103 H27 9.7057 -6.3608 70.9340 H 1 ARG 0.2615
|
| 116 |
+
104 H28 9.8440 -4.6162 70.5873 H 1 ARG 0.2615
|
| 117 |
+
105 H29 12.7139 -6.5055 72.8149 H 1 ARG 0.2615
|
| 118 |
+
106 H30 11.3311 -7.4268 72.1654 H 1 ARG 0.2615
|
| 119 |
+
107 H31 9.5145 -0.1880 71.7981 H 1 HIS 0.1885
|
| 120 |
+
108 H32 10.0633 2.6450 71.5369 H 1 HIS 0.0817
|
| 121 |
+
109 H33 9.5895 0.9263 74.0300 H 1 HIS 0.0420
|
| 122 |
+
110 H34 8.2887 1.6288 73.0096 H 1 HIS 0.0420
|
| 123 |
+
111 H35 7.7289 4.3043 73.4986 H 1 HIS 0.0729
|
| 124 |
+
112 H36 10.8077 4.9559 76.3657 H 1 HIS 0.1199
|
| 125 |
+
113 H37 8.7701 5.9843 75.2146 H 1 HIS 0.2361
|
| 126 |
+
114 H38 14.3839 2.4223 72.4067 H 1 PRO 0.0802
|
| 127 |
+
115 H39 14.7222 4.6630 72.0733 H 1 PRO 0.0313
|
| 128 |
+
116 H40 14.7136 4.8212 73.8626 H 1 PRO 0.0313
|
| 129 |
+
117 H41 12.9129 6.1428 72.3743 H 1 PRO 0.0287
|
| 130 |
+
118 H42 12.4259 5.3856 73.9287 H 1 PRO 0.0287
|
| 131 |
+
119 H43 10.8724 4.4298 72.4227 H 1 PRO 0.0524
|
| 132 |
+
120 H44 12.0795 4.3309 71.0960 H 1 PRO 0.0524
|
| 133 |
+
121 H45 12.1748 2.7276 75.1198 H 1 GLN 0.1883
|
| 134 |
+
122 H46 14.1143 2.4678 77.1981 H 1 GLN 0.0801
|
| 135 |
+
123 H47 11.2331 1.4465 77.0844 H 1 GLN 0.0337
|
| 136 |
+
124 H48 11.7793 3.0463 77.6919 H 1 GLN 0.0337
|
| 137 |
+
125 H49 13.0974 1.8529 79.4651 H 1 GLN 0.0504
|
| 138 |
+
126 H50 12.3720 0.3090 78.9022 H 1 GLN 0.0504
|
| 139 |
+
127 H51 9.4191 2.8219 80.1792 H 1 GLN 0.1814
|
| 140 |
+
128 H52 10.4151 3.1923 78.8114 H 1 GLN 0.1814
|
| 141 |
+
129 H53 12.6762 0.1885 74.9744 H 1 PHE 0.1885
|
| 142 |
+
130 H54 13.9403 -2.0409 76.4446 H 1 PHE 0.0823
|
| 143 |
+
131 H55 12.3101 -3.4889 75.4383 H 1 PHE 0.0474
|
| 144 |
+
132 H56 11.7444 -2.1784 74.3477 H 1 PHE 0.0474
|
| 145 |
+
133 H57 11.9232 -3.2421 77.9276 H 1 PHE 0.0557
|
| 146 |
+
134 H58 10.1182 -0.6241 75.0706 H 1 PHE 0.0557
|
| 147 |
+
135 H59 10.3599 -2.4268 79.6634 H 1 PHE 0.0599
|
| 148 |
+
136 H60 8.5618 0.1910 76.7896 H 1 PHE 0.0599
|
| 149 |
+
137 H61 8.6788 -0.7118 79.0950 H 1 PHE 0.0559
|
| 150 |
+
138 H62 15.5086 -0.3775 74.7037 H 1 GLY 0.1881
|
| 151 |
+
139 H63 16.7120 -2.5630 73.1840 H 1 GLY 0.0763
|
| 152 |
+
140 H64 17.3669 -0.9039 73.3967 H 1 GLY 0.0763
|
| 153 |
+
141 H65 14.3895 -0.1700 72.5670 H 1 GLY 0.1873
|
| 154 |
+
142 H66 13.2401 0.2484 70.5995 H 1 GLY 0.0689
|
| 155 |
+
143 H67 14.4088 -0.8018 69.7289 H 1 GLY 0.0689
|
| 156 |
+
@<TRIPOS>BOND
|
| 157 |
+
1 1 2 1
|
| 158 |
+
2 1 6 1
|
| 159 |
+
3 1 7 1
|
| 160 |
+
4 1 8 1
|
| 161 |
+
5 2 3 1
|
| 162 |
+
6 2 5 1
|
| 163 |
+
7 3 4 2
|
| 164 |
+
8 3 9 am
|
| 165 |
+
9 9 10 1
|
| 166 |
+
10 2 23 1
|
| 167 |
+
11 10 11 1
|
| 168 |
+
12 10 13 1
|
| 169 |
+
13 11 12 2
|
| 170 |
+
14 11 25 am
|
| 171 |
+
15 13 14 1
|
| 172 |
+
16 14 15 2
|
| 173 |
+
17 14 16 1
|
| 174 |
+
18 15 17 1
|
| 175 |
+
19 16 18 ar
|
| 176 |
+
20 16 19 ar
|
| 177 |
+
21 17 18 1
|
| 178 |
+
22 5 24 1
|
| 179 |
+
23 18 20 ar
|
| 180 |
+
24 19 21 ar
|
| 181 |
+
25 20 22 ar
|
| 182 |
+
26 21 22 ar
|
| 183 |
+
27 25 26 1
|
| 184 |
+
28 5 36 1
|
| 185 |
+
29 26 27 1
|
| 186 |
+
30 26 29 1
|
| 187 |
+
31 27 28 2
|
| 188 |
+
32 27 42 am
|
| 189 |
+
33 29 30 1
|
| 190 |
+
34 30 31 1
|
| 191 |
+
35 31 32 1
|
| 192 |
+
36 32 33 ar
|
| 193 |
+
37 5 37 1
|
| 194 |
+
38 33 34 ar
|
| 195 |
+
39 33 35 ar
|
| 196 |
+
40 9 38 1
|
| 197 |
+
41 10 39 1
|
| 198 |
+
42 13 40 1
|
| 199 |
+
43 13 41 1
|
| 200 |
+
44 42 43 1
|
| 201 |
+
45 15 52 1
|
| 202 |
+
46 43 44 1
|
| 203 |
+
47 43 46 1
|
| 204 |
+
48 44 45 2
|
| 205 |
+
49 44 55 am
|
| 206 |
+
50 46 47 1
|
| 207 |
+
51 47 48 1
|
| 208 |
+
52 47 49 2
|
| 209 |
+
53 48 50 2
|
| 210 |
+
54 17 53 1
|
| 211 |
+
55 49 51 1
|
| 212 |
+
56 50 51 1
|
| 213 |
+
57 19 54 1
|
| 214 |
+
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@<TRIPOS>SUBSTRUCTURE
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| 305 |
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1 ALA 1
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| 306 |
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|
1rst/1rst_ligand.sdf
ADDED
|
@@ -0,0 +1,292 @@
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|
| 1 |
+
1rst_ligand
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| 2 |
+
-I-interpret-
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| 3 |
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| 4 |
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| 128 |
+
9.3886 2.8096 80.1751 H 0 0 0 0 0
|
| 129 |
+
10.4335 3.2198 78.8109 H 0 0 0 0 0
|
| 130 |
+
12.6649 0.1978 74.9608 H 0 0 0 0 0
|
| 131 |
+
14.0061 -2.0226 76.4050 H 0 0 0 0 0
|
| 132 |
+
12.3196 -3.4743 75.4682 H 0 0 0 0 0
|
| 133 |
+
11.7473 -2.1485 74.3649 H 0 0 0 0 0
|
| 134 |
+
11.9273 -3.2463 77.9289 H 0 0 0 0 0
|
| 135 |
+
10.1179 -0.6219 75.0650 H 0 0 0 0 0
|
| 136 |
+
10.3602 -2.4290 79.6689 H 0 0 0 0 0
|
| 137 |
+
8.5578 0.1951 76.7882 H 0 0 0 0 0
|
| 138 |
+
8.6750 -0.7099 79.0992 H 0 0 0 0 0
|
| 139 |
+
15.5096 -0.3606 74.7143 H 0 0 0 0 0
|
| 140 |
+
16.6886 -2.5579 73.1788 H 0 0 0 0 0
|
| 141 |
+
17.3467 -0.8905 73.3925 H 0 0 0 0 0
|
| 142 |
+
14.3801 -0.1652 72.5840 H 0 0 0 0 0
|
| 143 |
+
13.2588 0.2711 70.6208 H 0 0 0 0 0
|
| 144 |
+
14.4424 -0.7924 69.7391 H 0 0 0 0 0
|
| 145 |
+
15.9684 1.4205 71.4172 H 0 0 0 0 0
|
| 146 |
+
1 2 1 0 0 0
|
| 147 |
+
2 3 1 0 0 0
|
| 148 |
+
2 5 1 0 0 0
|
| 149 |
+
3 4 2 0 0 0
|
| 150 |
+
3 6 1 0 0 0
|
| 151 |
+
6 7 1 0 0 0
|
| 152 |
+
7 8 1 0 0 0
|
| 153 |
+
7 10 1 0 0 0
|
| 154 |
+
8 9 2 0 0 0
|
| 155 |
+
8 20 1 0 0 0
|
| 156 |
+
10 11 1 0 0 0
|
| 157 |
+
11 12 4 0 0 0
|
| 158 |
+
11 13 4 0 0 0
|
| 159 |
+
12 14 4 0 0 0
|
| 160 |
+
13 15 4 0 0 0
|
| 161 |
+
13 16 4 0 0 0
|
| 162 |
+
14 15 4 0 0 0
|
| 163 |
+
15 17 4 0 0 0
|
| 164 |
+
16 18 4 0 0 0
|
| 165 |
+
17 19 4 0 0 0
|
| 166 |
+
18 19 4 0 0 0
|
| 167 |
+
20 21 1 0 0 0
|
| 168 |
+
21 22 1 0 0 0
|
| 169 |
+
21 24 1 0 0 0
|
| 170 |
+
22 23 2 0 0 0
|
| 171 |
+
22 31 1 0 0 0
|
| 172 |
+
24 25 1 0 0 0
|
| 173 |
+
25 26 1 0 0 0
|
| 174 |
+
26 27 1 0 0 0
|
| 175 |
+
27 28 1 0 0 0
|
| 176 |
+
28 29 1 0 0 0
|
| 177 |
+
28 30 2 0 0 0
|
| 178 |
+
31 32 1 0 0 0
|
| 179 |
+
32 33 1 0 0 0
|
| 180 |
+
32 35 1 0 0 0
|
| 181 |
+
33 34 2 0 0 0
|
| 182 |
+
33 41 1 0 0 0
|
| 183 |
+
35 36 1 0 0 0
|
| 184 |
+
36 37 4 0 0 0
|
| 185 |
+
36 38 4 0 0 0
|
| 186 |
+
37 39 4 0 0 0
|
| 187 |
+
38 40 4 0 0 0
|
| 188 |
+
39 40 4 0 0 0
|
| 189 |
+
41 42 1 0 0 0
|
| 190 |
+
41 47 1 0 0 0
|
| 191 |
+
42 43 1 0 0 0
|
| 192 |
+
42 45 1 0 0 0
|
| 193 |
+
43 44 2 0 0 0
|
| 194 |
+
43 48 1 0 0 0
|
| 195 |
+
45 46 1 0 0 0
|
| 196 |
+
46 47 1 0 0 0
|
| 197 |
+
48 49 1 0 0 0
|
| 198 |
+
49 50 1 0 0 0
|
| 199 |
+
49 52 1 0 0 0
|
| 200 |
+
50 51 2 0 0 0
|
| 201 |
+
50 57 1 0 0 0
|
| 202 |
+
52 53 1 0 0 0
|
| 203 |
+
53 54 1 0 0 0
|
| 204 |
+
54 55 2 0 0 0
|
| 205 |
+
54 56 1 0 0 0
|
| 206 |
+
57 58 1 0 0 0
|
| 207 |
+
58 59 1 0 0 0
|
| 208 |
+
58 61 1 0 0 0
|
| 209 |
+
59 60 2 0 0 0
|
| 210 |
+
59 68 1 0 0 0
|
| 211 |
+
61 62 1 0 0 0
|
| 212 |
+
62 63 4 0 0 0
|
| 213 |
+
62 64 4 0 0 0
|
| 214 |
+
63 65 4 0 0 0
|
| 215 |
+
64 66 4 0 0 0
|
| 216 |
+
65 67 4 0 0 0
|
| 217 |
+
66 67 4 0 0 0
|
| 218 |
+
68 69 1 0 0 0
|
| 219 |
+
69 70 1 0 0 0
|
| 220 |
+
70 71 2 0 0 0
|
| 221 |
+
70 72 1 0 0 0
|
| 222 |
+
72 73 1 0 0 0
|
| 223 |
+
73 74 1 0 0 0
|
| 224 |
+
74 75 2 0 0 0
|
| 225 |
+
74 76 1 0 0 0
|
| 226 |
+
1 77 1 0 0 0
|
| 227 |
+
1 78 1 0 0 0
|
| 228 |
+
1 79 1 0 0 0
|
| 229 |
+
2 80 1 0 0 0
|
| 230 |
+
5 81 1 0 0 0
|
| 231 |
+
5 82 1 0 0 0
|
| 232 |
+
5 83 1 0 0 0
|
| 233 |
+
6 84 1 0 0 0
|
| 234 |
+
7 85 1 0 0 0
|
| 235 |
+
10 86 1 0 0 0
|
| 236 |
+
10 87 1 0 0 0
|
| 237 |
+
12 88 1 0 0 0
|
| 238 |
+
16 89 1 0 0 0
|
| 239 |
+
17 90 1 0 0 0
|
| 240 |
+
18 91 1 0 0 0
|
| 241 |
+
19 92 1 0 0 0
|
| 242 |
+
20 93 1 0 0 0
|
| 243 |
+
21 94 1 0 0 0
|
| 244 |
+
24 95 1 0 0 0
|
| 245 |
+
24 96 1 0 0 0
|
| 246 |
+
25 97 1 0 0 0
|
| 247 |
+
25 98 1 0 0 0
|
| 248 |
+
26 99 1 0 0 0
|
| 249 |
+
26100 1 0 0 0
|
| 250 |
+
27101 1 0 0 0
|
| 251 |
+
29102 1 0 0 0
|
| 252 |
+
29103 1 0 0 0
|
| 253 |
+
30104 1 0 0 0
|
| 254 |
+
31105 1 0 0 0
|
| 255 |
+
32106 1 0 0 0
|
| 256 |
+
35107 1 0 0 0
|
| 257 |
+
35108 1 0 0 0
|
| 258 |
+
38109 1 0 0 0
|
| 259 |
+
39110 1 0 0 0
|
| 260 |
+
42111 1 0 0 0
|
| 261 |
+
45112 1 0 0 0
|
| 262 |
+
45113 1 0 0 0
|
| 263 |
+
46114 1 0 0 0
|
| 264 |
+
46115 1 0 0 0
|
| 265 |
+
47116 1 0 0 0
|
| 266 |
+
47117 1 0 0 0
|
| 267 |
+
48118 1 0 0 0
|
| 268 |
+
49119 1 0 0 0
|
| 269 |
+
52120 1 0 0 0
|
| 270 |
+
52121 1 0 0 0
|
| 271 |
+
53122 1 0 0 0
|
| 272 |
+
53123 1 0 0 0
|
| 273 |
+
56124 1 0 0 0
|
| 274 |
+
56125 1 0 0 0
|
| 275 |
+
57126 1 0 0 0
|
| 276 |
+
58127 1 0 0 0
|
| 277 |
+
61128 1 0 0 0
|
| 278 |
+
61129 1 0 0 0
|
| 279 |
+
63130 1 0 0 0
|
| 280 |
+
64131 1 0 0 0
|
| 281 |
+
65132 1 0 0 0
|
| 282 |
+
66133 1 0 0 0
|
| 283 |
+
67134 1 0 0 0
|
| 284 |
+
68135 1 0 0 0
|
| 285 |
+
69136 1 0 0 0
|
| 286 |
+
69137 1 0 0 0
|
| 287 |
+
72138 1 0 0 0
|
| 288 |
+
73139 1 0 0 0
|
| 289 |
+
73140 1 0 0 0
|
| 290 |
+
76141 1 0 0 0
|
| 291 |
+
M END
|
| 292 |
+
$$$$
|
1rst/1rst_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1rst/1rst_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1u71/1u71_ligand.mol2
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1u71_ligand
|
| 7 |
+
43 45 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 28.7960 13.1390 -4.3190 N.ar 1 MXA -0.2797
|
| 14 |
+
2 C2 27.5960 12.6440 -4.4550 C.ar 1 MXA 0.1600
|
| 15 |
+
3 N2 27.1960 12.3270 -5.7000 N.pl3 1 MXA -0.3066
|
| 16 |
+
4 N3 26.7520 12.3650 -3.4240 N.ar 1 MXA -0.2391
|
| 17 |
+
5 C4 27.1020 12.6130 -2.2120 C.ar 1 MXA 0.1356
|
| 18 |
+
6 N4 26.1370 12.3020 -1.3320 N.pl3 1 MXA -0.3073
|
| 19 |
+
7 C4A 28.3750 13.2270 -1.9150 C.ar 1 MXA 0.0701
|
| 20 |
+
8 C5 28.9030 13.6070 -0.6740 C.ar 1 MXA -0.0058
|
| 21 |
+
9 C5M 28.1790 13.4400 0.6520 C.3 1 MXA -0.0216
|
| 22 |
+
10 C6 30.1710 14.1720 -0.6450 C.ar 1 MXA -0.0032
|
| 23 |
+
11 C7 30.8480 14.3570 -1.8610 C.ar 1 MXA 0.0034
|
| 24 |
+
12 N8 30.4070 14.0210 -3.0420 N.ar 1 MXA -0.3039
|
| 25 |
+
13 C8A 29.1880 13.4550 -3.0760 C.ar 1 MXA 0.0814
|
| 26 |
+
14 C9 30.8230 14.6760 0.6050 C.3 1 MXA 0.0107
|
| 27 |
+
15 C1' 32.2470 14.3200 0.9540 C.ar 1 MXA -0.0123
|
| 28 |
+
16 C2' 33.2770 15.2500 0.8970 C.ar 1 MXA 0.0828
|
| 29 |
+
17 O2' 32.8830 16.5130 0.4990 O.3 1 MXA -0.3318
|
| 30 |
+
18 C21 33.9050 17.4780 0.2510 C.3 1 MXA 0.0554
|
| 31 |
+
19 C3' 34.5470 14.8740 1.2670 C.ar 1 MXA -0.0477
|
| 32 |
+
20 C4' 34.8080 13.5700 1.7060 C.ar 1 MXA -0.0485
|
| 33 |
+
21 C5' 33.8190 12.6740 1.7400 C.ar 1 MXA 0.0731
|
| 34 |
+
22 O5' 33.8000 11.3260 2.0990 O.3 1 MXA -0.3301
|
| 35 |
+
23 C51 32.4620 10.8250 2.0700 C.3 1 MXA 0.0568
|
| 36 |
+
24 C6' 32.5330 13.0600 1.3960 C.ar 1 MXA -0.0382
|
| 37 |
+
25 H1 27.8093 12.5239 -6.5038 H 1 MXA 0.1838
|
| 38 |
+
26 H2 26.2765 11.8874 -5.8493 H 1 MXA 0.1838
|
| 39 |
+
27 H3 26.2905 12.4528 -0.3247 H 1 MXA 0.1881
|
| 40 |
+
28 H4 25.2431 11.9126 -1.6641 H 1 MXA 0.1881
|
| 41 |
+
29 H5 27.1937 12.9833 0.4768 H 1 MXA 0.0430
|
| 42 |
+
30 H6 28.0479 14.4245 1.1247 H 1 MXA 0.0430
|
| 43 |
+
31 H7 28.7713 12.7913 1.3140 H 1 MXA 0.0430
|
| 44 |
+
32 H8 31.8264 14.8214 -1.8143 H 1 MXA 0.0817
|
| 45 |
+
33 H9 30.2019 14.3239 1.4418 H 1 MXA 0.0540
|
| 46 |
+
34 H10 30.7819 15.7741 0.5545 H 1 MXA 0.0540
|
| 47 |
+
35 H11 33.4448 18.4289 -0.0556 H 1 MXA 0.0570
|
| 48 |
+
36 H12 34.5653 17.1151 -0.5504 H 1 MXA 0.0570
|
| 49 |
+
37 H13 34.4925 17.6338 1.1678 H 1 MXA 0.0570
|
| 50 |
+
38 H14 35.3550 15.5950 1.2183 H 1 MXA 0.0496
|
| 51 |
+
39 H15 35.8080 13.2897 2.0166 H 1 MXA 0.0459
|
| 52 |
+
40 H16 32.4621 9.7625 2.3548 H 1 MXA 0.0573
|
| 53 |
+
41 H17 32.0521 10.9324 1.0549 H 1 MXA 0.0573
|
| 54 |
+
42 H18 31.8418 11.3943 2.7780 H 1 MXA 0.0573
|
| 55 |
+
43 H19 31.7284 12.3385 1.4805 H 1 MXA 0.0456
|
| 56 |
+
@<TRIPOS>BOND
|
| 57 |
+
1 1 2 ar
|
| 58 |
+
2 1 13 ar
|
| 59 |
+
3 2 3 1
|
| 60 |
+
4 2 4 ar
|
| 61 |
+
5 4 5 ar
|
| 62 |
+
6 5 6 1
|
| 63 |
+
7 5 7 ar
|
| 64 |
+
8 7 8 ar
|
| 65 |
+
9 7 13 ar
|
| 66 |
+
10 8 9 1
|
| 67 |
+
11 8 10 ar
|
| 68 |
+
12 10 11 ar
|
| 69 |
+
13 10 14 1
|
| 70 |
+
14 11 12 ar
|
| 71 |
+
15 12 13 ar
|
| 72 |
+
16 14 15 1
|
| 73 |
+
17 15 16 ar
|
| 74 |
+
18 15 24 ar
|
| 75 |
+
19 16 17 1
|
| 76 |
+
20 16 19 ar
|
| 77 |
+
21 17 18 1
|
| 78 |
+
22 19 20 ar
|
| 79 |
+
23 20 21 ar
|
| 80 |
+
24 21 22 1
|
| 81 |
+
25 21 24 ar
|
| 82 |
+
26 22 23 1
|
| 83 |
+
27 3 25 1
|
| 84 |
+
28 3 26 1
|
| 85 |
+
29 6 27 1
|
| 86 |
+
30 6 28 1
|
| 87 |
+
31 9 29 1
|
| 88 |
+
32 9 30 1
|
| 89 |
+
33 9 31 1
|
| 90 |
+
34 11 32 1
|
| 91 |
+
35 14 33 1
|
| 92 |
+
36 14 34 1
|
| 93 |
+
37 18 35 1
|
| 94 |
+
38 18 36 1
|
| 95 |
+
39 18 37 1
|
| 96 |
+
40 19 38 1
|
| 97 |
+
41 20 39 1
|
| 98 |
+
42 23 40 1
|
| 99 |
+
43 23 41 1
|
| 100 |
+
44 23 42 1
|
| 101 |
+
45 24 43 1
|
| 102 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 103 |
+
1 MXA 1
|
| 104 |
+
|
1u71/1u71_ligand.sdf
ADDED
|
@@ -0,0 +1,94 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1u71_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
43 45 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
28.7960 13.1390 -4.3190 N 0 0 0 0 0
|
| 6 |
+
27.5960 12.6440 -4.4550 C 0 0 0 0 0
|
| 7 |
+
27.1960 12.3270 -5.7000 N 0 0 0 0 0
|
| 8 |
+
26.7520 12.3650 -3.4240 N 0 0 0 0 0
|
| 9 |
+
27.1020 12.6130 -2.2120 C 0 0 0 0 0
|
| 10 |
+
26.1370 12.3020 -1.3320 N 0 0 0 0 0
|
| 11 |
+
28.3750 13.2270 -1.9150 C 0 0 0 0 0
|
| 12 |
+
28.9030 13.6070 -0.6740 C 0 0 0 0 0
|
| 13 |
+
28.1790 13.4400 0.6520 C 0 0 0 0 0
|
| 14 |
+
30.1710 14.1720 -0.6450 C 0 0 0 0 0
|
| 15 |
+
30.8480 14.3570 -1.8610 C 0 0 0 0 0
|
| 16 |
+
30.4070 14.0210 -3.0420 N 0 0 0 0 0
|
| 17 |
+
29.1880 13.4550 -3.0760 C 0 0 0 0 0
|
| 18 |
+
30.8230 14.6760 0.6050 C 0 0 0 0 0
|
| 19 |
+
32.2470 14.3200 0.9540 C 0 0 0 0 0
|
| 20 |
+
33.2770 15.2500 0.8970 C 0 0 0 0 0
|
| 21 |
+
32.8830 16.5130 0.4990 O 0 0 0 0 0
|
| 22 |
+
33.9050 17.4780 0.2510 C 0 0 0 0 0
|
| 23 |
+
34.5470 14.8740 1.2670 C 0 0 0 0 0
|
| 24 |
+
34.8080 13.5700 1.7060 C 0 0 0 0 0
|
| 25 |
+
33.8190 12.6740 1.7400 C 0 0 0 0 0
|
| 26 |
+
33.8000 11.3260 2.0990 O 0 0 0 0 0
|
| 27 |
+
32.4620 10.8250 2.0700 C 0 0 0 0 0
|
| 28 |
+
32.5330 13.0600 1.3960 C 0 0 0 0 0
|
| 29 |
+
27.8229 12.4764 -6.4906 H 0 0 0 0 0
|
| 30 |
+
26.2659 11.9373 -5.8531 H 0 0 0 0 0
|
| 31 |
+
25.2518 11.9164 -1.6609 H 0 0 0 0 0
|
| 32 |
+
26.2890 12.4513 -0.3345 H 0 0 0 0 0
|
| 33 |
+
27.2453 14.0019 0.6280 H 0 0 0 0 0
|
| 34 |
+
27.9650 12.3841 0.8172 H 0 0 0 0 0
|
| 35 |
+
28.8094 13.8147 1.4584 H 0 0 0 0 0
|
| 36 |
+
31.8318 14.8239 -1.8141 H 0 0 0 0 0
|
| 37 |
+
30.2387 14.2197 1.4040 H 0 0 0 0 0
|
| 38 |
+
30.8532 15.7564 0.4639 H 0 0 0 0 0
|
| 39 |
+
34.4864 17.6314 1.1602 H 0 0 0 0 0
|
| 40 |
+
34.5586 17.1172 -0.5432 H 0 0 0 0 0
|
| 41 |
+
33.4478 18.4197 -0.0527 H 0 0 0 0 0
|
| 42 |
+
35.3595 15.5990 1.2180 H 0 0 0 0 0
|
| 43 |
+
35.8135 13.2881 2.0183 H 0 0 0 0 0
|
| 44 |
+
31.8486 11.3899 2.7719 H 0 0 0 0 0
|
| 45 |
+
32.0570 10.9321 1.0637 H 0 0 0 0 0
|
| 46 |
+
32.4634 9.7722 2.3524 H 0 0 0 0 0
|
| 47 |
+
31.7240 12.3345 1.4810 H 0 0 0 0 0
|
| 48 |
+
1 2 4 0 0 0
|
| 49 |
+
1 13 4 0 0 0
|
| 50 |
+
2 3 1 0 0 0
|
| 51 |
+
2 4 4 0 0 0
|
| 52 |
+
4 5 4 0 0 0
|
| 53 |
+
5 6 1 0 0 0
|
| 54 |
+
5 7 4 0 0 0
|
| 55 |
+
7 8 4 0 0 0
|
| 56 |
+
7 13 4 0 0 0
|
| 57 |
+
8 9 1 0 0 0
|
| 58 |
+
8 10 4 0 0 0
|
| 59 |
+
10 11 4 0 0 0
|
| 60 |
+
10 14 1 0 0 0
|
| 61 |
+
11 12 4 0 0 0
|
| 62 |
+
12 13 4 0 0 0
|
| 63 |
+
14 15 1 0 0 0
|
| 64 |
+
15 16 4 0 0 0
|
| 65 |
+
15 24 4 0 0 0
|
| 66 |
+
16 17 1 0 0 0
|
| 67 |
+
16 19 4 0 0 0
|
| 68 |
+
17 18 1 0 0 0
|
| 69 |
+
19 20 4 0 0 0
|
| 70 |
+
20 21 4 0 0 0
|
| 71 |
+
21 22 1 0 0 0
|
| 72 |
+
21 24 4 0 0 0
|
| 73 |
+
22 23 1 0 0 0
|
| 74 |
+
3 25 1 0 0 0
|
| 75 |
+
3 26 1 0 0 0
|
| 76 |
+
6 27 1 0 0 0
|
| 77 |
+
6 28 1 0 0 0
|
| 78 |
+
9 29 1 0 0 0
|
| 79 |
+
9 30 1 0 0 0
|
| 80 |
+
9 31 1 0 0 0
|
| 81 |
+
11 32 1 0 0 0
|
| 82 |
+
14 33 1 0 0 0
|
| 83 |
+
14 34 1 0 0 0
|
| 84 |
+
18 35 1 0 0 0
|
| 85 |
+
18 36 1 0 0 0
|
| 86 |
+
18 37 1 0 0 0
|
| 87 |
+
19 38 1 0 0 0
|
| 88 |
+
20 39 1 0 0 0
|
| 89 |
+
23 40 1 0 0 0
|
| 90 |
+
23 41 1 0 0 0
|
| 91 |
+
23 42 1 0 0 0
|
| 92 |
+
24 43 1 0 0 0
|
| 93 |
+
M END
|
| 94 |
+
$$$$
|
1u71/1u71_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1u71/1u71_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1yyy/1yyy_ligand.mol2
ADDED
|
@@ -0,0 +1,135 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:46 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1yyy_ligand
|
| 7 |
+
59 60 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 S1 24.1170 5.6950 29.9690 S.o2 1 0KV -0.2056
|
| 14 |
+
2 O1 23.2240 6.1850 28.9230 O.co2 1 0KV -0.4837
|
| 15 |
+
3 O2 23.3720 4.9650 30.9930 O.co2 1 0KV -0.4837
|
| 16 |
+
4 N 25.2070 4.6360 29.2610 N.am 1 0KV -0.2737
|
| 17 |
+
5 CA 25.6080 3.3340 29.6730 C.3 1 0KV 0.1223
|
| 18 |
+
6 CB 26.1630 3.3970 31.0710 C.3 1 0KV -0.0142
|
| 19 |
+
7 CG 26.3840 2.0510 31.7140 C.3 1 0KV -0.0285
|
| 20 |
+
8 C 24.5160 2.2170 29.5080 C.2 1 0KV 0.2022
|
| 21 |
+
9 CD 25.2270 1.0820 31.6160 C.3 1 0KV 0.0367
|
| 22 |
+
10 O 23.7770 2.4060 28.5310 O.2 1 0KV -0.3946
|
| 23 |
+
11 N 24.5500 1.1280 30.2950 N.am 1 0KV -0.2529
|
| 24 |
+
12 CA 23.5560 0.0650 29.9410 C.3 1 0KV 0.1227
|
| 25 |
+
13 C 22.3610 0.9520 30.3660 C.2 1 0KV 0.1990
|
| 26 |
+
14 O 22.1550 1.3880 31.5460 O.2 1 0KV -0.3948
|
| 27 |
+
15 C2 19.9660 2.0220 28.2830 C.3 1 0KV -0.0055
|
| 28 |
+
16 C3 20.1020 2.0220 26.7530 C.3 1 0KV 0.0677
|
| 29 |
+
17 N 21.4210 0.2370 29.5930 N.am 1 0KV -0.2800
|
| 30 |
+
18 C15 20.0270 0.4370 30.0990 C.3 1 0KV 0.0655
|
| 31 |
+
19 C16 19.5200 -0.6460 31.0470 C.3 1 0KV 0.0671
|
| 32 |
+
20 O5 18.0960 -0.5750 31.1730 O.3 1 0KV -0.3927
|
| 33 |
+
21 C17 19.1230 0.8780 28.9040 C.3 1 0KV -0.0217
|
| 34 |
+
22 CZ 20.0210 3.8610 24.9590 C.cat 1 0KV 0.2903
|
| 35 |
+
23 NE 20.4800 3.3890 26.2550 N.pl3 1 0KV -0.2595
|
| 36 |
+
24 CD 21.2770 4.2670 27.2060 C.3 1 0KV 0.0649
|
| 37 |
+
25 CG 20.4380 4.6230 28.4460 C.3 1 0KV -0.0193
|
| 38 |
+
26 C1 19.7210 3.3550 29.0270 C.3 1 0KV -0.0438
|
| 39 |
+
27 NH1 20.2210 5.1190 24.6300 N.pl3 1 0KV -0.2848
|
| 40 |
+
28 NH2 19.4280 2.9970 24.1840 N.pl3 1 0KV -0.2848
|
| 41 |
+
29 H1 24.6050 6.4695 30.3910 H 1 0KV 0.1702
|
| 42 |
+
30 H2 25.6404 4.9691 28.4236 H 1 0KV 0.1660
|
| 43 |
+
31 H3 26.4377 3.0415 29.0127 H 1 0KV 0.0752
|
| 44 |
+
32 H4 25.4583 3.9653 31.6958 H 1 0KV 0.0309
|
| 45 |
+
33 H5 27.1280 3.9237 31.0348 H 1 0KV 0.0309
|
| 46 |
+
34 H6 26.5975 2.2163 32.7803 H 1 0KV 0.0287
|
| 47 |
+
35 H7 27.2569 1.5854 31.2331 H 1 0KV 0.0287
|
| 48 |
+
36 H8 24.4927 1.3308 32.3963 H 1 0KV 0.0524
|
| 49 |
+
37 H9 25.6067 0.0629 31.7813 H 1 0KV 0.0524
|
| 50 |
+
38 H10 23.6591 -0.8510 30.5412 H 1 0KV 0.0765
|
| 51 |
+
39 H11 23.5523 -0.1953 28.8723 H 1 0KV 0.0765
|
| 52 |
+
40 H12 20.9910 1.7668 28.5899 H 1 0KV 0.0335
|
| 53 |
+
41 H13 19.1418 1.7268 26.3048 H 1 0KV 0.0693
|
| 54 |
+
42 H14 20.8804 1.3024 26.4593 H 1 0KV 0.0693
|
| 55 |
+
43 H15 21.6571 -0.3322 28.8054 H 1 0KV 0.1855
|
| 56 |
+
44 H16 20.0807 1.3271 30.7430 H 1 0KV 0.0579
|
| 57 |
+
45 H17 19.9785 -0.5044 32.0368 H 1 0KV 0.0580
|
| 58 |
+
46 H18 19.7996 -1.6335 30.6512 H 1 0KV 0.0580
|
| 59 |
+
47 H19 17.7974 -1.2548 31.7656 H 1 0KV 0.2095
|
| 60 |
+
48 H20 18.9732 0.0557 28.1889 H 1 0KV 0.0292
|
| 61 |
+
49 H21 18.1458 1.2430 29.2530 H 1 0KV 0.0292
|
| 62 |
+
50 H22 21.5659 5.1928 26.6870 H 1 0KV 0.0690
|
| 63 |
+
51 H23 22.1813 3.7275 27.5241 H 1 0KV 0.0690
|
| 64 |
+
52 H24 19.6786 5.3673 28.1642 H 1 0KV 0.0299
|
| 65 |
+
53 H25 21.0985 5.0468 29.2168 H 1 0KV 0.0299
|
| 66 |
+
54 H26 20.0605 3.2255 30.0652 H 1 0KV 0.0270
|
| 67 |
+
55 H27 18.6384 3.5493 29.0168 H 1 0KV 0.0270
|
| 68 |
+
56 H28 19.9018 5.4691 23.7154 H 1 0KV 0.2615
|
| 69 |
+
57 H29 20.6968 5.7538 25.2870 H 1 0KV 0.2615
|
| 70 |
+
58 H30 19.3011 2.0246 24.4991 H 1 0KV 0.2615
|
| 71 |
+
59 H31 19.0863 3.2866 23.2565 H 1 0KV 0.2615
|
| 72 |
+
@<TRIPOS>BOND
|
| 73 |
+
1 1 2 ar
|
| 74 |
+
2 1 3 ar
|
| 75 |
+
3 4 1 am
|
| 76 |
+
4 5 4 1
|
| 77 |
+
5 5 6 1
|
| 78 |
+
6 8 5 1
|
| 79 |
+
7 7 6 1
|
| 80 |
+
8 9 7 1
|
| 81 |
+
9 8 10 2
|
| 82 |
+
10 11 8 am
|
| 83 |
+
11 11 9 1
|
| 84 |
+
12 12 11 1
|
| 85 |
+
13 13 12 1
|
| 86 |
+
14 13 14 2
|
| 87 |
+
15 17 13 am
|
| 88 |
+
16 15 16 1
|
| 89 |
+
17 21 15 1
|
| 90 |
+
18 15 26 1
|
| 91 |
+
19 16 23 1
|
| 92 |
+
20 18 17 1
|
| 93 |
+
21 18 19 1
|
| 94 |
+
22 18 21 1
|
| 95 |
+
23 19 20 1
|
| 96 |
+
24 23 22 ar
|
| 97 |
+
25 22 27 ar
|
| 98 |
+
26 22 28 ar
|
| 99 |
+
27 23 24 1
|
| 100 |
+
28 24 25 1
|
| 101 |
+
29 25 26 1
|
| 102 |
+
30 1 29 1
|
| 103 |
+
31 4 30 1
|
| 104 |
+
32 5 31 1
|
| 105 |
+
33 6 32 1
|
| 106 |
+
34 6 33 1
|
| 107 |
+
35 7 34 1
|
| 108 |
+
36 7 35 1
|
| 109 |
+
37 9 36 1
|
| 110 |
+
38 9 37 1
|
| 111 |
+
39 12 38 1
|
| 112 |
+
40 12 39 1
|
| 113 |
+
41 15 40 1
|
| 114 |
+
42 16 41 1
|
| 115 |
+
43 16 42 1
|
| 116 |
+
44 17 43 1
|
| 117 |
+
45 18 44 1
|
| 118 |
+
46 19 45 1
|
| 119 |
+
47 19 46 1
|
| 120 |
+
48 20 47 1
|
| 121 |
+
49 21 48 1
|
| 122 |
+
50 21 49 1
|
| 123 |
+
51 24 50 1
|
| 124 |
+
52 24 51 1
|
| 125 |
+
53 25 52 1
|
| 126 |
+
54 25 53 1
|
| 127 |
+
55 26 54 1
|
| 128 |
+
56 26 55 1
|
| 129 |
+
57 27 56 1
|
| 130 |
+
58 27 57 1
|
| 131 |
+
59 28 58 1
|
| 132 |
+
60 28 59 1
|
| 133 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 134 |
+
1 0KV 1
|
| 135 |
+
|
1yyy/1yyy_ligand.sdf
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1yyy_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
57 58 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
24.1170 5.6950 29.9690 S 0 0 0 0 0
|
| 6 |
+
23.2240 6.1850 28.9230 O 0 0 0 0 0
|
| 7 |
+
23.3720 4.9650 30.9930 O 0 0 0 0 0
|
| 8 |
+
25.2070 4.6360 29.2610 N 0 0 0 0 0
|
| 9 |
+
25.6080 3.3340 29.6730 C 0 0 0 0 0
|
| 10 |
+
26.1630 3.3970 31.0710 C 0 0 0 0 0
|
| 11 |
+
26.3840 2.0510 31.7140 C 0 0 0 0 0
|
| 12 |
+
24.5160 2.2170 29.5080 C 0 0 0 0 0
|
| 13 |
+
25.2270 1.0820 31.6160 C 0 0 0 0 0
|
| 14 |
+
23.7770 2.4060 28.5310 O 0 0 0 0 0
|
| 15 |
+
24.5500 1.1280 30.2950 N 0 0 0 0 0
|
| 16 |
+
23.5560 0.0650 29.9410 C 0 0 0 0 0
|
| 17 |
+
22.3610 0.9520 30.3660 C 0 0 0 0 0
|
| 18 |
+
22.1550 1.3880 31.5460 O 0 0 0 0 0
|
| 19 |
+
19.9660 2.0220 28.2830 C 0 0 0 0 0
|
| 20 |
+
20.1020 2.0220 26.7530 C 0 0 0 0 0
|
| 21 |
+
21.4210 0.2370 29.5930 N 0 0 0 0 0
|
| 22 |
+
20.0270 0.4370 30.0990 C 0 0 0 0 0
|
| 23 |
+
19.5200 -0.6460 31.0470 C 0 0 0 0 0
|
| 24 |
+
18.0960 -0.5750 31.1730 O 0 0 0 0 0
|
| 25 |
+
19.1230 0.8780 28.9040 C 0 0 0 0 0
|
| 26 |
+
20.0210 3.8610 24.9590 C 0 0 0 0 0
|
| 27 |
+
20.4800 3.3890 26.2550 N 0 0 0 0 0
|
| 28 |
+
21.2770 4.2670 27.2060 C 0 0 0 0 0
|
| 29 |
+
20.4380 4.6230 28.4460 C 0 0 0 0 0
|
| 30 |
+
19.7210 3.3550 29.0270 C 0 0 0 0 0
|
| 31 |
+
20.2210 5.1190 24.6300 N 0 0 0 0 0
|
| 32 |
+
19.4280 2.9970 24.1840 N 0 0 0 0 0
|
| 33 |
+
25.6491 4.9758 28.4069 H 0 0 0 0 0
|
| 34 |
+
26.3918 3.0176 28.9848 H 0 0 0 0 0
|
| 35 |
+
25.4325 3.9275 31.6818 H 0 0 0 0 0
|
| 36 |
+
27.1356 3.8850 31.0076 H 0 0 0 0 0
|
| 37 |
+
26.5422 2.2377 32.7762 H 0 0 0 0 0
|
| 38 |
+
27.2194 1.5898 31.1872 H 0 0 0 0 0
|
| 39 |
+
24.4957 1.3565 32.3762 H 0 0 0 0 0
|
| 40 |
+
25.6213 0.0753 31.7547 H 0 0 0 0 0
|
| 41 |
+
23.6619 -0.9212 30.3931 H 0 0 0 0 0
|
| 42 |
+
23.5683 -0.3471 28.9320 H 0 0 0 0 0
|
| 43 |
+
21.0168 1.8088 28.4790 H 0 0 0 0 0
|
| 44 |
+
19.1457 1.7382 26.3136 H 0 0 0 0 0
|
| 45 |
+
20.8807 1.3146 26.4678 H 0 0 0 0 0
|
| 46 |
+
21.6619 -0.3436 28.7897 H 0 0 0 0 0
|
| 47 |
+
19.9967 1.2635 30.8090 H 0 0 0 0 0
|
| 48 |
+
19.9703 -0.4969 32.0284 H 0 0 0 0 0
|
| 49 |
+
19.7920 -1.6227 30.6468 H 0 0 0 0 0
|
| 50 |
+
17.7942 -1.2620 31.7718 H 0 0 0 0 0
|
| 51 |
+
18.9002 0.0718 28.2051 H 0 0 0 0 0
|
| 52 |
+
18.1224 1.1879 29.2054 H 0 0 0 0 0
|
| 53 |
+
21.5529 5.1868 26.6902 H 0 0 0 0 0
|
| 54 |
+
22.1669 3.7247 27.5255 H 0 0 0 0 0
|
| 55 |
+
19.6794 5.3501 28.1564 H 0 0 0 0 0
|
| 56 |
+
21.1007 5.0293 29.2101 H 0 0 0 0 0
|
| 57 |
+
20.1194 3.2171 30.0322 H 0 0 0 0 0
|
| 58 |
+
18.6516 3.5513 28.9501 H 0 0 0 0 0
|
| 59 |
+
19.9051 5.4657 23.7242 H 0 0 0 0 0
|
| 60 |
+
20.6920 5.7476 25.2807 H 0 0 0 0 0
|
| 61 |
+
19.3025 2.0340 24.4959 H 0 0 0 0 0
|
| 62 |
+
1 2 4 0 0 0
|
| 63 |
+
1 3 4 0 0 0
|
| 64 |
+
4 1 1 0 0 0
|
| 65 |
+
5 4 1 0 0 0
|
| 66 |
+
5 6 1 0 0 0
|
| 67 |
+
8 5 1 0 0 0
|
| 68 |
+
7 6 1 0 0 0
|
| 69 |
+
9 7 1 0 0 0
|
| 70 |
+
8 10 2 0 0 0
|
| 71 |
+
11 8 1 0 0 0
|
| 72 |
+
11 9 1 0 0 0
|
| 73 |
+
12 11 1 0 0 0
|
| 74 |
+
13 12 1 0 0 0
|
| 75 |
+
13 14 2 0 0 0
|
| 76 |
+
17 13 1 0 0 0
|
| 77 |
+
15 16 1 0 0 0
|
| 78 |
+
21 15 1 0 0 0
|
| 79 |
+
15 26 1 0 0 0
|
| 80 |
+
16 23 1 0 0 0
|
| 81 |
+
18 17 1 0 0 0
|
| 82 |
+
18 19 1 0 0 0
|
| 83 |
+
18 21 1 0 0 0
|
| 84 |
+
19 20 1 0 0 0
|
| 85 |
+
23 22 1 0 0 0
|
| 86 |
+
22 27 1 0 0 0
|
| 87 |
+
22 28 2 0 0 0
|
| 88 |
+
23 24 1 0 0 0
|
| 89 |
+
24 25 1 0 0 0
|
| 90 |
+
25 26 1 0 0 0
|
| 91 |
+
4 29 1 0 0 0
|
| 92 |
+
5 30 1 0 0 0
|
| 93 |
+
6 31 1 0 0 0
|
| 94 |
+
6 32 1 0 0 0
|
| 95 |
+
7 33 1 0 0 0
|
| 96 |
+
7 34 1 0 0 0
|
| 97 |
+
9 35 1 0 0 0
|
| 98 |
+
9 36 1 0 0 0
|
| 99 |
+
12 37 1 0 0 0
|
| 100 |
+
12 38 1 0 0 0
|
| 101 |
+
15 39 1 0 0 0
|
| 102 |
+
16 40 1 0 0 0
|
| 103 |
+
16 41 1 0 0 0
|
| 104 |
+
17 42 1 0 0 0
|
| 105 |
+
18 43 1 0 0 0
|
| 106 |
+
19 44 1 0 0 0
|
| 107 |
+
19 45 1 0 0 0
|
| 108 |
+
20 46 1 0 0 0
|
| 109 |
+
21 47 1 0 0 0
|
| 110 |
+
21 48 1 0 0 0
|
| 111 |
+
24 49 1 0 0 0
|
| 112 |
+
24 50 1 0 0 0
|
| 113 |
+
25 51 1 0 0 0
|
| 114 |
+
25 52 1 0 0 0
|
| 115 |
+
26 53 1 0 0 0
|
| 116 |
+
26 54 1 0 0 0
|
| 117 |
+
27 55 1 0 0 0
|
| 118 |
+
27 56 1 0 0 0
|
| 119 |
+
28 57 1 0 0 0
|
| 120 |
+
M END
|
| 121 |
+
$$$$
|
1yyy/1yyy_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1yyy/1yyy_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2ael/2ael_ligand.mol2
ADDED
|
@@ -0,0 +1,98 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2ael_ligand
|
| 7 |
+
41 41 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C01 38.1100 72.2130 35.1580 C.3 1 SAZ -0.0163
|
| 14 |
+
2 C02 38.6790 70.7410 35.2550 C.3 1 SAZ -0.0001
|
| 15 |
+
3 C03 36.6010 72.1120 34.7780 C.3 1 SAZ -0.0035
|
| 16 |
+
4 C05 38.0410 70.0760 36.5180 C.3 1 SAZ -0.0234
|
| 17 |
+
5 C07 35.8650 71.2050 35.7960 C.2 1 SAZ -0.1037
|
| 18 |
+
6 N08 38.8470 73.1630 34.1990 N.4 1 SAZ 0.2371
|
| 19 |
+
7 C09 38.4460 74.8150 37.2320 C.2 1 SAZ -0.1043
|
| 20 |
+
8 C10 38.4460 75.1940 35.7700 C.3 1 SAZ -0.0065
|
| 21 |
+
9 C11 39.4210 74.3550 34.8810 C.3 1 SAZ -0.0288
|
| 22 |
+
10 C14 37.4230 74.4450 38.0420 C.2 1 SAZ -0.0869
|
| 23 |
+
11 C17 35.9560 74.3140 37.6820 C.3 1 SAZ -0.0406
|
| 24 |
+
12 C18 37.7010 74.1060 39.4730 C.3 1 SAZ -0.0406
|
| 25 |
+
13 C19 39.9710 72.5760 33.4730 C.3 1 SAZ -0.0426
|
| 26 |
+
14 C31 36.5090 70.2840 36.5910 C.2 1 SAZ -0.0837
|
| 27 |
+
15 C32 35.7680 69.4360 37.5720 C.3 1 SAZ -0.0404
|
| 28 |
+
16 H1 38.1851 72.6577 36.1613 H 1 SAZ 0.0868
|
| 29 |
+
17 H2 39.7740 70.7670 35.3563 H 1 SAZ 0.0342
|
| 30 |
+
18 H3 38.4076 70.1727 34.3532 H 1 SAZ 0.0342
|
| 31 |
+
19 H4 36.5059 71.6821 33.7700 H 1 SAZ 0.0394
|
| 32 |
+
20 H5 36.1524 73.1163 34.7922 H 1 SAZ 0.0394
|
| 33 |
+
21 H6 38.4992 70.5149 37.4166 H 1 SAZ 0.0412
|
| 34 |
+
22 H7 38.2489 68.9962 36.4905 H 1 SAZ 0.0412
|
| 35 |
+
23 H8 34.7841 71.3009 35.8872 H 1 SAZ 0.0244
|
| 36 |
+
24 H9 38.1658 73.4747 33.5246 H 1 SAZ 0.2036
|
| 37 |
+
25 H10 39.4230 74.8433 37.7123 H 1 SAZ 0.0244
|
| 38 |
+
26 H11 38.7335 76.2527 35.6898 H 1 SAZ 0.0391
|
| 39 |
+
27 H12 37.4259 75.0606 35.3808 H 1 SAZ 0.0391
|
| 40 |
+
28 H13 39.8213 75.0228 34.1040 H 1 SAZ 0.0830
|
| 41 |
+
29 H14 40.2426 74.0072 35.5245 H 1 SAZ 0.0830
|
| 42 |
+
30 H15 35.3882 73.9940 38.5681 H 1 SAZ 0.0375
|
| 43 |
+
31 H16 35.8398 73.5672 36.8828 H 1 SAZ 0.0375
|
| 44 |
+
32 H17 35.5756 75.2857 37.3341 H 1 SAZ 0.0375
|
| 45 |
+
33 H18 38.7765 74.2188 39.6742 H 1 SAZ 0.0375
|
| 46 |
+
34 H19 37.3983 73.0668 39.6691 H 1 SAZ 0.0375
|
| 47 |
+
35 H20 37.1326 74.7832 40.1274 H 1 SAZ 0.0375
|
| 48 |
+
36 H21 39.6313 71.6791 32.9343 H 1 SAZ 0.0778
|
| 49 |
+
37 H22 40.7624 72.2984 34.1847 H 1 SAZ 0.0778
|
| 50 |
+
38 H23 40.3654 73.3085 32.7534 H 1 SAZ 0.0778
|
| 51 |
+
39 H24 34.6956 69.6768 37.5282 H 1 SAZ 0.0375
|
| 52 |
+
40 H25 36.1467 69.6322 38.5859 H 1 SAZ 0.0375
|
| 53 |
+
41 H26 35.9158 68.3745 37.3244 H 1 SAZ 0.0375
|
| 54 |
+
@<TRIPOS>BOND
|
| 55 |
+
1 1 2 1
|
| 56 |
+
2 1 3 1
|
| 57 |
+
3 6 1 1
|
| 58 |
+
4 2 4 1
|
| 59 |
+
5 3 5 1
|
| 60 |
+
6 4 14 1
|
| 61 |
+
7 5 14 2
|
| 62 |
+
8 9 6 1
|
| 63 |
+
9 6 13 1
|
| 64 |
+
10 8 7 1
|
| 65 |
+
11 7 10 2
|
| 66 |
+
12 8 9 1
|
| 67 |
+
13 10 11 1
|
| 68 |
+
14 10 12 1
|
| 69 |
+
15 14 15 1
|
| 70 |
+
16 1 16 1
|
| 71 |
+
17 2 17 1
|
| 72 |
+
18 2 18 1
|
| 73 |
+
19 3 19 1
|
| 74 |
+
20 3 20 1
|
| 75 |
+
21 4 21 1
|
| 76 |
+
22 4 22 1
|
| 77 |
+
23 5 23 1
|
| 78 |
+
24 6 24 1
|
| 79 |
+
25 7 25 1
|
| 80 |
+
26 8 26 1
|
| 81 |
+
27 8 27 1
|
| 82 |
+
28 9 28 1
|
| 83 |
+
29 9 29 1
|
| 84 |
+
30 11 30 1
|
| 85 |
+
31 11 31 1
|
| 86 |
+
32 11 32 1
|
| 87 |
+
33 12 33 1
|
| 88 |
+
34 12 34 1
|
| 89 |
+
35 12 35 1
|
| 90 |
+
36 13 36 1
|
| 91 |
+
37 13 37 1
|
| 92 |
+
38 13 38 1
|
| 93 |
+
39 15 39 1
|
| 94 |
+
40 15 40 1
|
| 95 |
+
41 15 41 1
|
| 96 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 97 |
+
1 SAZ 1
|
| 98 |
+
|
2ael/2ael_ligand.sdf
ADDED
|
@@ -0,0 +1,88 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2ael_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
41 41 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
38.1100 72.2130 35.1580 C 0 0 0 0 0
|
| 6 |
+
38.6790 70.7410 35.2550 C 0 0 0 0 0
|
| 7 |
+
36.6010 72.1120 34.7780 C 0 0 0 0 0
|
| 8 |
+
38.0410 70.0760 36.5180 C 0 0 0 0 0
|
| 9 |
+
35.8650 71.2050 35.7960 C 0 0 0 0 0
|
| 10 |
+
38.8470 73.1630 34.1990 N 0 3 0 0 0
|
| 11 |
+
38.4460 74.8150 37.2320 C 0 0 0 0 0
|
| 12 |
+
38.4460 75.1940 35.7700 C 0 0 0 0 0
|
| 13 |
+
39.4210 74.3550 34.8810 C 0 0 0 0 0
|
| 14 |
+
37.4230 74.4450 38.0420 C 0 0 0 0 0
|
| 15 |
+
35.9560 74.3140 37.6820 C 0 0 0 0 0
|
| 16 |
+
37.7010 74.1060 39.4730 C 0 0 0 0 0
|
| 17 |
+
39.9710 72.5760 33.4730 C 0 0 0 0 0
|
| 18 |
+
36.5090 70.2840 36.5910 C 0 0 0 0 0
|
| 19 |
+
35.7680 69.4360 37.5720 C 0 0 0 0 0
|
| 20 |
+
38.2659 72.6712 36.1347 H 0 0 0 0 0
|
| 21 |
+
39.7657 70.7560 35.3387 H 0 0 0 0 0
|
| 22 |
+
38.4294 70.1748 34.3577 H 0 0 0 0 0
|
| 23 |
+
36.5079 71.6841 33.7798 H 0 0 0 0 0
|
| 24 |
+
36.1571 73.1074 34.7944 H 0 0 0 0 0
|
| 25 |
+
38.4844 70.5378 37.4002 H 0 0 0 0 0
|
| 26 |
+
38.2317 69.0041 36.4650 H 0 0 0 0 0
|
| 27 |
+
34.7831 71.3010 35.8872 H 0 0 0 0 0
|
| 28 |
+
38.0979 73.4054 33.5505 H 0 0 0 0 0
|
| 29 |
+
39.4239 74.8433 37.7127 H 0 0 0 0 0
|
| 30 |
+
38.7738 76.2318 35.7101 H 0 0 0 0 0
|
| 31 |
+
37.4386 75.0146 35.3945 H 0 0 0 0 0
|
| 32 |
+
39.7534 75.0237 34.0870 H 0 0 0 0 0
|
| 33 |
+
40.1887 73.9743 35.5547 H 0 0 0 0 0
|
| 34 |
+
35.5803 75.2774 37.3374 H 0 0 0 0 0
|
| 35 |
+
35.8423 73.5738 36.8900 H 0 0 0 0 0
|
| 36 |
+
35.3945 73.9969 38.5608 H 0 0 0 0 0
|
| 37 |
+
38.3964 73.2678 39.5180 H 0 0 0 0 0
|
| 38 |
+
38.1394 74.9706 39.9713 H 0 0 0 0 0
|
| 39 |
+
36.7690 73.8335 39.9682 H 0 0 0 0 0
|
| 40 |
+
40.3609 73.3028 32.7604 H 0 0 0 0 0
|
| 41 |
+
40.7545 72.3014 34.1793 H 0 0 0 0 0
|
| 42 |
+
39.6331 71.6875 32.9397 H 0 0 0 0 0
|
| 43 |
+
35.2641 70.0763 38.2960 H 0 0 0 0 0
|
| 44 |
+
35.0303 68.8319 37.0438 H 0 0 0 0 0
|
| 45 |
+
36.4708 68.7831 38.0896 H 0 0 0 0 0
|
| 46 |
+
1 2 1 0 0 0
|
| 47 |
+
1 3 1 0 0 0
|
| 48 |
+
6 1 1 0 0 0
|
| 49 |
+
2 4 1 0 0 0
|
| 50 |
+
3 5 1 0 0 0
|
| 51 |
+
4 14 1 0 0 0
|
| 52 |
+
5 14 2 0 0 0
|
| 53 |
+
9 6 1 0 0 0
|
| 54 |
+
6 13 1 0 0 0
|
| 55 |
+
8 7 1 0 0 0
|
| 56 |
+
7 10 2 0 0 0
|
| 57 |
+
8 9 1 0 0 0
|
| 58 |
+
10 11 1 0 0 0
|
| 59 |
+
10 12 1 0 0 0
|
| 60 |
+
14 15 1 0 0 0
|
| 61 |
+
1 16 1 0 0 0
|
| 62 |
+
2 17 1 0 0 0
|
| 63 |
+
2 18 1 0 0 0
|
| 64 |
+
3 19 1 0 0 0
|
| 65 |
+
3 20 1 0 0 0
|
| 66 |
+
4 21 1 0 0 0
|
| 67 |
+
4 22 1 0 0 0
|
| 68 |
+
5 23 1 0 0 0
|
| 69 |
+
6 24 1 0 0 0
|
| 70 |
+
7 25 1 0 0 0
|
| 71 |
+
8 26 1 0 0 0
|
| 72 |
+
8 27 1 0 0 0
|
| 73 |
+
9 28 1 0 0 0
|
| 74 |
+
9 29 1 0 0 0
|
| 75 |
+
11 30 1 0 0 0
|
| 76 |
+
11 31 1 0 0 0
|
| 77 |
+
11 32 1 0 0 0
|
| 78 |
+
12 33 1 0 0 0
|
| 79 |
+
12 34 1 0 0 0
|
| 80 |
+
12 35 1 0 0 0
|
| 81 |
+
13 36 1 0 0 0
|
| 82 |
+
13 37 1 0 0 0
|
| 83 |
+
13 38 1 0 0 0
|
| 84 |
+
15 39 1 0 0 0
|
| 85 |
+
15 40 1 0 0 0
|
| 86 |
+
15 41 1 0 0 0
|
| 87 |
+
M END
|
| 88 |
+
$$$$
|
2ael/2ael_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2ael/2ael_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2boi/2boi_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2boi/2boi_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2ohk/2ohk_ligand.mol2
ADDED
|
@@ -0,0 +1,55 @@
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:56 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2ohk_ligand
|
| 7 |
+
19 20 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 66.6510 49.0460 6.1240 N.pl3 1 1SQ -0.3155
|
| 14 |
+
2 C2 67.4210 49.0870 7.2440 C.ar 1 1SQ 0.1223
|
| 15 |
+
3 N3 67.8830 50.2920 7.6400 N.ar 1 1SQ -0.2916
|
| 16 |
+
4 C4 68.6510 50.3330 8.7350 C.ar 1 1SQ -0.0144
|
| 17 |
+
5 C5 68.9550 49.2220 9.4970 C.ar 1 1SQ -0.0498
|
| 18 |
+
6 C6 68.4550 47.9810 9.1330 C.ar 1 1SQ -0.0142
|
| 19 |
+
7 C7 68.7150 46.8260 9.8620 C.ar 1 1SQ -0.0523
|
| 20 |
+
8 C8 68.1960 45.6130 9.4540 C.ar 1 1SQ -0.0593
|
| 21 |
+
9 C9 67.4250 45.5400 8.3140 C.ar 1 1SQ -0.0583
|
| 22 |
+
10 C10 67.1560 46.6740 7.5840 C.ar 1 1SQ -0.0462
|
| 23 |
+
11 C11 67.6570 47.9060 7.9780 C.ar 1 1SQ 0.0336
|
| 24 |
+
12 H1 66.2785 48.1465 5.7878 H 1 1SQ 0.1821
|
| 25 |
+
13 H2 66.4403 49.9144 5.6118 H 1 1SQ 0.1821
|
| 26 |
+
14 H3 69.0567 51.2906 9.0407 H 1 1SQ 0.0720
|
| 27 |
+
15 H4 69.5819 49.3198 10.3760 H 1 1SQ 0.0557
|
| 28 |
+
16 H5 69.3278 46.8778 10.7546 H 1 1SQ 0.0616
|
| 29 |
+
17 H6 68.3953 44.7173 10.0311 H 1 1SQ 0.0647
|
| 30 |
+
18 H7 67.0287 44.5841 7.9912 H 1 1SQ 0.0611
|
| 31 |
+
19 H8 66.5457 46.6043 6.6908 H 1 1SQ 0.0663
|
| 32 |
+
@<TRIPOS>BOND
|
| 33 |
+
1 1 2 1
|
| 34 |
+
2 2 3 ar
|
| 35 |
+
3 2 11 ar
|
| 36 |
+
4 3 4 ar
|
| 37 |
+
5 4 5 ar
|
| 38 |
+
6 5 6 ar
|
| 39 |
+
7 6 7 ar
|
| 40 |
+
8 6 11 ar
|
| 41 |
+
9 7 8 ar
|
| 42 |
+
10 8 9 ar
|
| 43 |
+
11 9 10 ar
|
| 44 |
+
12 10 11 ar
|
| 45 |
+
13 1 12 1
|
| 46 |
+
14 1 13 1
|
| 47 |
+
15 4 14 1
|
| 48 |
+
16 5 15 1
|
| 49 |
+
17 7 16 1
|
| 50 |
+
18 8 17 1
|
| 51 |
+
19 9 18 1
|
| 52 |
+
20 10 19 1
|
| 53 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 54 |
+
1 1SQ 1
|
| 55 |
+
|
2ohk/2ohk_ligand.sdf
ADDED
|
@@ -0,0 +1,45 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2ohk_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
19 20 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
66.6510 49.0460 6.1240 N 0 0 0 0 0
|
| 6 |
+
67.4210 49.0870 7.2440 C 0 0 0 0 0
|
| 7 |
+
67.8830 50.2920 7.6400 N 0 0 0 0 0
|
| 8 |
+
68.6510 50.3330 8.7350 C 0 0 0 0 0
|
| 9 |
+
68.9550 49.2220 9.4970 C 0 0 0 0 0
|
| 10 |
+
68.4550 47.9810 9.1330 C 0 0 0 0 0
|
| 11 |
+
68.7150 46.8260 9.8620 C 0 0 0 0 0
|
| 12 |
+
68.1960 45.6130 9.4540 C 0 0 0 0 0
|
| 13 |
+
67.4250 45.5400 8.3140 C 0 0 0 0 0
|
| 14 |
+
67.1560 46.6740 7.5840 C 0 0 0 0 0
|
| 15 |
+
67.6570 47.9060 7.9780 C 0 0 0 0 0
|
| 16 |
+
66.4423 49.9060 5.6168 H 0 0 0 0 0
|
| 17 |
+
66.2821 48.1552 5.7911 H 0 0 0 0 0
|
| 18 |
+
69.0590 51.2959 9.0424 H 0 0 0 0 0
|
| 19 |
+
69.5853 49.3203 10.3808 H 0 0 0 0 0
|
| 20 |
+
69.3312 46.8781 10.7596 H 0 0 0 0 0
|
| 21 |
+
68.3964 44.7123 10.0343 H 0 0 0 0 0
|
| 22 |
+
67.0265 44.5788 7.9894 H 0 0 0 0 0
|
| 23 |
+
66.5423 46.6039 6.6859 H 0 0 0 0 0
|
| 24 |
+
1 2 1 0 0 0
|
| 25 |
+
2 3 4 0 0 0
|
| 26 |
+
2 11 4 0 0 0
|
| 27 |
+
3 4 4 0 0 0
|
| 28 |
+
4 5 4 0 0 0
|
| 29 |
+
5 6 4 0 0 0
|
| 30 |
+
6 7 4 0 0 0
|
| 31 |
+
6 11 4 0 0 0
|
| 32 |
+
7 8 4 0 0 0
|
| 33 |
+
8 9 4 0 0 0
|
| 34 |
+
9 10 4 0 0 0
|
| 35 |
+
10 11 4 0 0 0
|
| 36 |
+
1 12 1 0 0 0
|
| 37 |
+
1 13 1 0 0 0
|
| 38 |
+
4 14 1 0 0 0
|
| 39 |
+
5 15 1 0 0 0
|
| 40 |
+
7 16 1 0 0 0
|
| 41 |
+
8 17 1 0 0 0
|
| 42 |
+
9 18 1 0 0 0
|
| 43 |
+
10 19 1 0 0 0
|
| 44 |
+
M END
|
| 45 |
+
$$$$
|
2ohk/2ohk_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2ohk/2ohk_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|