Add batch 149
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1b3h/1b3h_ligand.mol2 +162 -0
- 1b3h/1b3h_ligand.sdf +154 -0
- 1b3h/1b3h_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1b3h/1b3h_protein_processed_fix.pdb +0 -0
- 1c5o/1c5o_ligand.mol2 +52 -0
- 1c5o/1c5o_ligand.sdf +40 -0
- 1c5o/1c5o_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1c5o/1c5o_protein_processed_fix.pdb +0 -0
- 1em6/1em6_ligand.mol2 +135 -0
- 1em6/1em6_ligand.sdf +121 -0
- 1em6/1em6_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1em6/1em6_protein_processed_fix.pdb +0 -0
- 1g85/1g85_ligand.mol2 +69 -0
- 1g85/1g85_ligand.sdf +59 -0
- 1g85/1g85_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1g85/1g85_protein_processed_fix.pdb +0 -0
- 1h3a/1h3a_ligand.mol2 +122 -0
- 1h3a/1h3a_ligand.sdf +112 -0
- 1h3a/1h3a_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1h3a/1h3a_protein_processed_fix.pdb +0 -0
- 1nde/1nde_ligand.mol2 +145 -0
- 1nde/1nde_ligand.sdf +135 -0
- 1nde/1nde_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1nde/1nde_protein_processed_fix.pdb +0 -0
- 1ndv/1ndv_ligand.mol2 +101 -0
- 1ndv/1ndv_ligand.sdf +87 -0
- 1ndv/1ndv_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ndv/1ndv_protein_processed_fix.pdb +0 -0
- 1ngw/1ngw_ligand.mol2 +188 -0
- 1ngw/1ngw_ligand.sdf +174 -0
- 1ngw/1ngw_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ngw/1ngw_protein_processed_fix.pdb +0 -0
- 2bo4/2bo4_ligand.mol2 +51 -0
- 2bo4/2bo4_ligand.sdf +47 -0
- 2bo4/2bo4_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2bo4/2bo4_protein_processed_fix.pdb +0 -0
- 2brm/2brm_ligand.mol2 +105 -0
- 2brm/2brm_ligand.sdf +93 -0
- 2brm/2brm_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2brm/2brm_protein_processed_fix.pdb +0 -0
- 2byh/2byh_ligand.mol2 +98 -0
- 2byh/2byh_ligand.sdf +86 -0
- 2byh/2byh_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2byh/2byh_protein_processed_fix.pdb +0 -0
- 2hh5/2hh5_ligand.mol2 +158 -0
- 2hh5/2hh5_ligand.sdf +148 -0
- 2hh5/2hh5_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2hh5/2hh5_protein_processed_fix.pdb +0 -0
- 2hzi/2hzi_ligand.mol2 +107 -0
- 2hzi/2hzi_ligand.sdf +97 -0
1b3h/1b3h_ligand.mol2
ADDED
|
@@ -0,0 +1,162 @@
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| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:46 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1b3h_ligand
|
| 7 |
+
73 73 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 6.9910 16.6240 15.2240 N.4 1 LYS 0.2379
|
| 14 |
+
2 CA 6.6310 17.9840 14.6770 C.3 1 LYS 0.0650
|
| 15 |
+
3 C 5.3960 18.5290 15.3820 C.2 1 LYS 0.2267
|
| 16 |
+
4 O 4.6070 17.7360 15.8990 O.2 1 LYS -0.3907
|
| 17 |
+
5 CB 6.4400 17.9170 13.1440 C.3 1 LYS 0.0080
|
| 18 |
+
6 CG 5.3720 16.9100 12.6970 C.3 1 LYS -0.0410
|
| 19 |
+
7 CD 5.3310 16.7550 11.1780 C.3 1 LYS -0.0123
|
| 20 |
+
8 CE 6.6420 16.2530 10.5790 C.3 1 LYS -0.0354
|
| 21 |
+
9 NZ 6.7580 14.7730 10.8530 N.4 1 LYS 0.2185
|
| 22 |
+
10 N 5.2020 19.8410 15.4620 N.am 1 ALC -0.2610
|
| 23 |
+
11 CA 4.0680 20.4700 16.0990 C.3 1 ALC 0.1313
|
| 24 |
+
12 C 2.7730 20.4260 15.2790 C.2 1 ALC 0.2034
|
| 25 |
+
13 O 2.6950 20.7490 14.0800 O.2 1 ALC -0.3944
|
| 26 |
+
14 CB 4.3500 21.9470 16.4480 C.3 1 ALC -0.0096
|
| 27 |
+
15 CG 5.1730 22.0820 17.7930 C.3 1 ALC -0.0368
|
| 28 |
+
16 CD2 4.9840 23.5300 18.3200 C.3 1 ALC -0.0500
|
| 29 |
+
17 CE2 5.8770 23.8190 19.5390 C.3 1 ALC -0.0528
|
| 30 |
+
18 CZ 7.3610 23.5330 19.2530 C.3 1 ALC -0.0530
|
| 31 |
+
19 CE1 7.5790 22.1440 18.6200 C.3 1 ALC -0.0528
|
| 32 |
+
20 CD1 6.6740 21.9280 17.4160 C.3 1 ALC -0.0500
|
| 33 |
+
21 N 1.6840 20.0100 15.9440 N.am 1 LYS -0.2695
|
| 34 |
+
22 CA 0.3890 19.9600 15.3340 C.3 1 LYS 0.0944
|
| 35 |
+
23 C -0.5990 20.8560 16.1180 C.2 1 LYS 0.0601
|
| 36 |
+
24 O -1.6080 21.2620 15.5260 O.co2 1 LYS -0.5666
|
| 37 |
+
25 CB -0.2140 18.5380 15.2960 C.3 1 LYS -0.0177
|
| 38 |
+
26 CG -1.2060 18.5350 14.1010 C.3 1 LYS -0.0446
|
| 39 |
+
27 CD -2.1920 17.4180 14.3230 C.3 1 LYS -0.0125
|
| 40 |
+
28 CE -2.8130 16.8010 13.0950 C.3 1 LYS -0.0354
|
| 41 |
+
29 NZ -3.1180 17.6700 11.9600 N.4 1 LYS 0.2185
|
| 42 |
+
30 OXT -0.3650 21.2090 17.2690 O.co2 1 LYS -0.5666
|
| 43 |
+
31 H1 7.8091 16.2764 14.7486 H 1 LYS 0.2015
|
| 44 |
+
32 H2 6.2222 15.9887 15.0778 H 1 LYS 0.2015
|
| 45 |
+
33 H3 7.1823 16.6986 16.2109 H 1 LYS 0.2015
|
| 46 |
+
34 H4 7.4669 18.6687 14.8830 H 1 LYS 0.1098
|
| 47 |
+
35 H5 7.3989 17.6313 12.6871 H 1 LYS 0.0346
|
| 48 |
+
36 H6 6.1466 18.9152 12.7870 H 1 LYS 0.0346
|
| 49 |
+
37 H7 4.3882 17.2579 13.0450 H 1 LYS 0.0270
|
| 50 |
+
38 H8 5.5956 15.9318 13.1477 H 1 LYS 0.0270
|
| 51 |
+
39 H9 5.0988 17.7346 10.7347 H 1 LYS 0.0317
|
| 52 |
+
40 H10 4.5357 16.0392 10.9229 H 1 LYS 0.0317
|
| 53 |
+
41 H11 7.4880 16.7832 11.0407 H 1 LYS 0.0813
|
| 54 |
+
42 H12 6.6461 16.4308 9.4935 H 1 LYS 0.0813
|
| 55 |
+
43 H13 7.6202 14.4257 10.4630 H 1 LYS 0.1994
|
| 56 |
+
44 H14 5.9800 14.2911 10.4306 H 1 LYS 0.1994
|
| 57 |
+
45 H15 6.7514 14.6140 11.8483 H 1 LYS 0.1994
|
| 58 |
+
46 H16 5.8918 20.4371 15.0510 H 1 ALC 0.1884
|
| 59 |
+
47 H17 3.8871 19.9246 17.0370 H 1 ALC 0.0800
|
| 60 |
+
48 H18 3.3922 22.4760 16.5612 H 1 ALC 0.0315
|
| 61 |
+
49 H19 4.9264 22.4032 15.6297 H 1 ALC 0.0315
|
| 62 |
+
50 H20 4.8596 21.3356 18.5377 H 1 ALC 0.0303
|
| 63 |
+
51 H21 3.9318 23.6684 18.6094 H 1 ALC 0.0268
|
| 64 |
+
52 H22 5.2394 24.2368 17.5168 H 1 ALC 0.0268
|
| 65 |
+
53 H23 5.5492 23.1856 20.3764 H 1 ALC 0.0265
|
| 66 |
+
54 H24 5.7673 24.8780 19.8154 H 1 ALC 0.0265
|
| 67 |
+
55 H25 7.9193 23.5816 20.1996 H 1 ALC 0.0265
|
| 68 |
+
56 H26 7.7422 24.2998 18.5626 H 1 ALC 0.0265
|
| 69 |
+
57 H27 7.3626 21.3711 19.3722 H 1 ALC 0.0265
|
| 70 |
+
58 H28 8.6274 22.0591 18.2981 H 1 ALC 0.0265
|
| 71 |
+
59 H29 6.9257 22.6688 16.6428 H 1 ALC 0.0268
|
| 72 |
+
60 H30 6.8408 20.9149 17.0213 H 1 ALC 0.0268
|
| 73 |
+
61 H31 1.7799 19.7253 16.8978 H 1 LYS 0.1875
|
| 74 |
+
62 H32 0.4806 20.3323 14.3030 H 1 LYS 0.0726
|
| 75 |
+
63 H33 -0.7440 18.3207 16.2351 H 1 LYS 0.0305
|
| 76 |
+
64 H34 0.5771 17.7898 15.1398 H 1 LYS 0.0305
|
| 77 |
+
65 H35 -0.6590 18.3697 13.1611 H 1 LYS 0.0269
|
| 78 |
+
66 H36 -1.7360 19.4976 14.0524 H 1 LYS 0.0269
|
| 79 |
+
67 H37 -3.0084 17.8142 14.9446 H 1 LYS 0.0317
|
| 80 |
+
68 H38 -1.6704 16.6181 14.8690 H 1 LYS 0.0317
|
| 81 |
+
69 H39 -3.7573 16.3319 13.4086 H 1 LYS 0.0813
|
| 82 |
+
70 H40 -2.1205 16.0261 12.7346 H 1 LYS 0.0813
|
| 83 |
+
71 H41 -3.5258 17.1229 11.2181 H 1 LYS 0.1994
|
| 84 |
+
72 H42 -2.2694 18.1030 11.6308 H 1 LYS 0.1994
|
| 85 |
+
73 H43 -3.7692 18.3833 12.2484 H 1 LYS 0.1994
|
| 86 |
+
@<TRIPOS>BOND
|
| 87 |
+
1 3 2 1
|
| 88 |
+
2 2 5 1
|
| 89 |
+
3 2 1 1
|
| 90 |
+
4 5 6 1
|
| 91 |
+
5 6 7 1
|
| 92 |
+
6 7 8 1
|
| 93 |
+
7 8 9 1
|
| 94 |
+
8 3 4 2
|
| 95 |
+
9 11 10 1
|
| 96 |
+
10 11 14 1
|
| 97 |
+
11 12 11 1
|
| 98 |
+
12 12 13 2
|
| 99 |
+
13 14 15 1
|
| 100 |
+
14 15 20 1
|
| 101 |
+
15 15 16 1
|
| 102 |
+
16 16 17 1
|
| 103 |
+
17 17 18 1
|
| 104 |
+
18 19 18 1
|
| 105 |
+
19 20 19 1
|
| 106 |
+
20 22 23 1
|
| 107 |
+
21 22 25 1
|
| 108 |
+
22 21 22 1
|
| 109 |
+
23 25 26 1
|
| 110 |
+
24 26 27 1
|
| 111 |
+
25 27 28 1
|
| 112 |
+
26 28 29 1
|
| 113 |
+
27 23 30 ar
|
| 114 |
+
28 23 24 ar
|
| 115 |
+
29 10 3 am
|
| 116 |
+
30 12 21 am
|
| 117 |
+
31 1 31 1
|
| 118 |
+
32 1 32 1
|
| 119 |
+
33 1 33 1
|
| 120 |
+
34 2 34 1
|
| 121 |
+
35 5 35 1
|
| 122 |
+
36 5 36 1
|
| 123 |
+
37 6 37 1
|
| 124 |
+
38 6 38 1
|
| 125 |
+
39 7 39 1
|
| 126 |
+
40 7 40 1
|
| 127 |
+
41 8 41 1
|
| 128 |
+
42 8 42 1
|
| 129 |
+
43 9 43 1
|
| 130 |
+
44 9 44 1
|
| 131 |
+
45 9 45 1
|
| 132 |
+
46 10 46 1
|
| 133 |
+
47 11 47 1
|
| 134 |
+
48 14 48 1
|
| 135 |
+
49 14 49 1
|
| 136 |
+
50 15 50 1
|
| 137 |
+
51 16 51 1
|
| 138 |
+
52 16 52 1
|
| 139 |
+
53 17 53 1
|
| 140 |
+
54 17 54 1
|
| 141 |
+
55 18 55 1
|
| 142 |
+
56 18 56 1
|
| 143 |
+
57 19 57 1
|
| 144 |
+
58 19 58 1
|
| 145 |
+
59 20 59 1
|
| 146 |
+
60 20 60 1
|
| 147 |
+
61 21 61 1
|
| 148 |
+
62 22 62 1
|
| 149 |
+
63 25 63 1
|
| 150 |
+
64 25 64 1
|
| 151 |
+
65 26 65 1
|
| 152 |
+
66 26 66 1
|
| 153 |
+
67 27 67 1
|
| 154 |
+
68 27 68 1
|
| 155 |
+
69 28 69 1
|
| 156 |
+
70 28 70 1
|
| 157 |
+
71 29 71 1
|
| 158 |
+
72 29 72 1
|
| 159 |
+
73 29 73 1
|
| 160 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 161 |
+
1 LYS 1
|
| 162 |
+
|
1b3h/1b3h_ligand.sdf
ADDED
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@@ -0,0 +1,154 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1b3h_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
74 74 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
6.9910 16.6240 15.2240 N 0 3 0 0 0
|
| 6 |
+
6.6310 17.9840 14.6770 C 0 0 0 0 0
|
| 7 |
+
5.3960 18.5290 15.3820 C 0 0 0 0 0
|
| 8 |
+
4.6070 17.7360 15.8990 O 0 0 0 0 0
|
| 9 |
+
6.4400 17.9170 13.1440 C 0 0 0 0 0
|
| 10 |
+
5.3720 16.9100 12.6970 C 0 0 0 0 0
|
| 11 |
+
5.3310 16.7550 11.1780 C 0 0 0 0 0
|
| 12 |
+
6.6420 16.2530 10.5790 C 0 0 0 0 0
|
| 13 |
+
6.7580 14.7730 10.8530 N 0 3 0 0 0
|
| 14 |
+
5.2020 19.8410 15.4620 N 0 0 0 0 0
|
| 15 |
+
4.0680 20.4700 16.0990 C 0 0 0 0 0
|
| 16 |
+
2.7730 20.4260 15.2790 C 0 0 0 0 0
|
| 17 |
+
2.6950 20.7490 14.0800 O 0 0 0 0 0
|
| 18 |
+
4.3500 21.9470 16.4480 C 0 0 0 0 0
|
| 19 |
+
5.1730 22.0820 17.7930 C 0 0 0 0 0
|
| 20 |
+
4.9840 23.5300 18.3200 C 0 0 0 0 0
|
| 21 |
+
5.8770 23.8190 19.5390 C 0 0 0 0 0
|
| 22 |
+
7.3610 23.5330 19.2530 C 0 0 0 0 0
|
| 23 |
+
7.5790 22.1440 18.6200 C 0 0 0 0 0
|
| 24 |
+
6.6740 21.9280 17.4160 C 0 0 0 0 0
|
| 25 |
+
1.6840 20.0100 15.9440 N 0 0 0 0 0
|
| 26 |
+
0.3890 19.9600 15.3340 C 0 0 0 0 0
|
| 27 |
+
-0.5990 20.8560 16.1180 C 0 0 0 0 0
|
| 28 |
+
-1.6080 21.2620 15.5260 O 0 0 0 0 0
|
| 29 |
+
-0.2140 18.5380 15.2960 C 0 0 0 0 0
|
| 30 |
+
-1.2060 18.5350 14.1010 C 0 0 0 0 0
|
| 31 |
+
-2.1920 17.4180 14.3230 C 0 0 0 0 0
|
| 32 |
+
-2.8130 16.8010 13.0950 C 0 0 0 0 0
|
| 33 |
+
-3.1180 17.6700 11.9600 N 0 3 0 0 0
|
| 34 |
+
-0.3650 21.2090 17.2690 O 0 0 0 0 0
|
| 35 |
+
7.1130 16.6868 16.2347 H 0 0 0 0 0
|
| 36 |
+
6.2428 15.9642 15.0110 H 0 0 0 0 0
|
| 37 |
+
7.8596 16.3052 14.7946 H 0 0 0 0 0
|
| 38 |
+
7.4510 18.6750 14.8727 H 0 0 0 0 0
|
| 39 |
+
7.3886 17.5985 12.7117 H 0 0 0 0 0
|
| 40 |
+
6.1155 18.9036 12.8132 H 0 0 0 0 0
|
| 41 |
+
4.3998 17.2748 13.0285 H 0 0 0 0 0
|
| 42 |
+
5.6147 15.9404 13.1319 H 0 0 0 0 0
|
| 43 |
+
5.1342 17.7398 10.7543 H 0 0 0 0 0
|
| 44 |
+
4.5623 16.0181 10.9455 H 0 0 0 0 0
|
| 45 |
+
7.4828 16.7816 11.0281 H 0 0 0 0 0
|
| 46 |
+
6.6537 16.4345 9.5043 H 0 0 0 0 0
|
| 47 |
+
7.6307 14.4227 10.4579 H 0 0 0 0 0
|
| 48 |
+
6.7512 14.6134 11.8604 H 0 0 0 0 0
|
| 49 |
+
5.9702 14.2865 10.4251 H 0 0 0 0 0
|
| 50 |
+
5.9056 20.4490 15.0428 H 0 0 0 0 0
|
| 51 |
+
3.9199 19.8768 17.0014 H 0 0 0 0 0
|
| 52 |
+
3.3960 22.4585 16.5756 H 0 0 0 0 0
|
| 53 |
+
4.9363 22.3854 15.6404 H 0 0 0 0 0
|
| 54 |
+
4.8554 21.3469 18.5325 H 0 0 0 0 0
|
| 55 |
+
3.9438 23.6502 18.6226 H 0 0 0 0 0
|
| 56 |
+
5.2588 24.2217 17.5237 H 0 0 0 0 0
|
| 57 |
+
5.5577 23.1703 20.3547 H 0 0 0 0 0
|
| 58 |
+
5.7773 24.8751 19.7896 H 0 0 0 0 0
|
| 59 |
+
7.8990 23.5606 20.2006 H 0 0 0 0 0
|
| 60 |
+
7.7205 24.2846 18.5502 H 0 0 0 0 0
|
| 61 |
+
7.3453 21.3851 19.3667 H 0 0 0 0 0
|
| 62 |
+
8.6151 22.0758 18.2883 H 0 0 0 0 0
|
| 63 |
+
6.9184 22.6769 16.6627 H 0 0 0 0 0
|
| 64 |
+
6.8332 20.9164 17.0426 H 0 0 0 0 0
|
| 65 |
+
1.7819 19.7196 16.9169 H 0 0 0 0 0
|
| 66 |
+
0.5297 20.3055 14.3098 H 0 0 0 0 0
|
| 67 |
+
-1.6315 20.8877 14.6423 H 0 0 0 0 0
|
| 68 |
+
-0.7174 18.2942 16.2316 H 0 0 0 0 0
|
| 69 |
+
0.5602 17.7807 15.1723 H 0 0 0 0 0
|
| 70 |
+
-0.6692 18.3850 13.1643 H 0 0 0 0 0
|
| 71 |
+
-1.7255 19.4912 14.0384 H 0 0 0 0 0
|
| 72 |
+
-3.0163 17.8555 14.8862 H 0 0 0 0 0
|
| 73 |
+
-1.6323 16.6182 14.8080 H 0 0 0 0 0
|
| 74 |
+
-3.7766 16.4134 13.4257 H 0 0 0 0 0
|
| 75 |
+
-2.0708 16.0946 12.7232 H 0 0 0 0 0
|
| 76 |
+
-3.5305 17.1154 11.2099 H 0 0 0 0 0
|
| 77 |
+
-3.7770 18.3913 12.2530 H 0 0 0 0 0
|
| 78 |
+
-2.2586 18.1076 11.6278 H 0 0 0 0 0
|
| 79 |
+
3 2 1 0 0 0
|
| 80 |
+
2 5 1 0 0 0
|
| 81 |
+
2 1 1 0 0 0
|
| 82 |
+
5 6 1 0 0 0
|
| 83 |
+
6 7 1 0 0 0
|
| 84 |
+
7 8 1 0 0 0
|
| 85 |
+
8 9 1 0 0 0
|
| 86 |
+
3 4 2 0 0 0
|
| 87 |
+
11 10 1 0 0 0
|
| 88 |
+
11 14 1 0 0 0
|
| 89 |
+
12 11 1 0 0 0
|
| 90 |
+
12 13 2 0 0 0
|
| 91 |
+
14 15 1 0 0 0
|
| 92 |
+
15 20 1 0 0 0
|
| 93 |
+
15 16 1 0 0 0
|
| 94 |
+
16 17 1 0 0 0
|
| 95 |
+
17 18 1 0 0 0
|
| 96 |
+
19 18 1 0 0 0
|
| 97 |
+
20 19 1 0 0 0
|
| 98 |
+
22 23 1 0 0 0
|
| 99 |
+
22 25 1 0 0 0
|
| 100 |
+
21 22 1 0 0 0
|
| 101 |
+
25 26 1 0 0 0
|
| 102 |
+
26 27 1 0 0 0
|
| 103 |
+
27 28 1 0 0 0
|
| 104 |
+
28 29 1 0 0 0
|
| 105 |
+
23 30 2 0 0 0
|
| 106 |
+
23 24 1 0 0 0
|
| 107 |
+
10 3 1 0 0 0
|
| 108 |
+
12 21 1 0 0 0
|
| 109 |
+
1 31 1 0 0 0
|
| 110 |
+
1 32 1 0 0 0
|
| 111 |
+
1 33 1 0 0 0
|
| 112 |
+
2 34 1 0 0 0
|
| 113 |
+
5 35 1 0 0 0
|
| 114 |
+
5 36 1 0 0 0
|
| 115 |
+
6 37 1 0 0 0
|
| 116 |
+
6 38 1 0 0 0
|
| 117 |
+
7 39 1 0 0 0
|
| 118 |
+
7 40 1 0 0 0
|
| 119 |
+
8 41 1 0 0 0
|
| 120 |
+
8 42 1 0 0 0
|
| 121 |
+
9 43 1 0 0 0
|
| 122 |
+
9 44 1 0 0 0
|
| 123 |
+
9 45 1 0 0 0
|
| 124 |
+
10 46 1 0 0 0
|
| 125 |
+
11 47 1 0 0 0
|
| 126 |
+
14 48 1 0 0 0
|
| 127 |
+
14 49 1 0 0 0
|
| 128 |
+
15 50 1 0 0 0
|
| 129 |
+
16 51 1 0 0 0
|
| 130 |
+
16 52 1 0 0 0
|
| 131 |
+
17 53 1 0 0 0
|
| 132 |
+
17 54 1 0 0 0
|
| 133 |
+
18 55 1 0 0 0
|
| 134 |
+
18 56 1 0 0 0
|
| 135 |
+
19 57 1 0 0 0
|
| 136 |
+
19 58 1 0 0 0
|
| 137 |
+
20 59 1 0 0 0
|
| 138 |
+
20 60 1 0 0 0
|
| 139 |
+
21 61 1 0 0 0
|
| 140 |
+
22 62 1 0 0 0
|
| 141 |
+
24 63 1 0 0 0
|
| 142 |
+
25 64 1 0 0 0
|
| 143 |
+
25 65 1 0 0 0
|
| 144 |
+
26 66 1 0 0 0
|
| 145 |
+
26 67 1 0 0 0
|
| 146 |
+
27 68 1 0 0 0
|
| 147 |
+
27 69 1 0 0 0
|
| 148 |
+
28 70 1 0 0 0
|
| 149 |
+
28 71 1 0 0 0
|
| 150 |
+
29 72 1 0 0 0
|
| 151 |
+
29 73 1 0 0 0
|
| 152 |
+
29 74 1 0 0 0
|
| 153 |
+
M END
|
| 154 |
+
$$$$
|
1b3h/1b3h_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1b3h/1b3h_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1c5o/1c5o_ligand.mol2
ADDED
|
@@ -0,0 +1,52 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:47 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1c5o_ligand
|
| 7 |
+
18 18 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 11.8270 -11.7370 23.1510 C.ar 1 BAM 0.0260
|
| 14 |
+
2 C2 12.2520 -12.9160 22.5400 C.ar 1 BAM -0.0565
|
| 15 |
+
3 C3 13.1770 -12.8950 21.5060 C.ar 1 BAM -0.0618
|
| 16 |
+
4 C4 13.7030 -11.6970 21.0520 C.ar 1 BAM -0.0618
|
| 17 |
+
5 C5 13.3090 -10.5250 21.6260 C.ar 1 BAM -0.0618
|
| 18 |
+
6 C6 12.3830 -10.5490 22.6610 C.ar 1 BAM -0.0565
|
| 19 |
+
7 C 10.9010 -11.7410 24.2070 C.cat 1 BAM 0.2356
|
| 20 |
+
8 N1 10.3210 -12.8610 24.5160 N.pl3 1 BAM -0.2721
|
| 21 |
+
9 N2 10.6290 -10.6390 24.8750 N.pl3 1 BAM -0.2721
|
| 22 |
+
10 H1 11.8529 -13.8653 22.8786 H 1 BAM 0.0617
|
| 23 |
+
11 H2 13.4913 -13.8262 21.0487 H 1 BAM 0.0618
|
| 24 |
+
12 H3 14.4251 -11.6913 20.2435 H 1 BAM 0.0618
|
| 25 |
+
13 H4 13.7150 -9.5822 21.2776 H 1 BAM 0.0618
|
| 26 |
+
14 H5 12.0783 -9.6095 23.1077 H 1 BAM 0.0617
|
| 27 |
+
15 H6 9.6379 -12.8918 25.2862 H 1 BAM 0.3181
|
| 28 |
+
16 H7 10.5441 -13.7185 23.9908 H 1 BAM 0.3181
|
| 29 |
+
17 H8 11.0943 -9.7555 24.6223 H 1 BAM 0.3181
|
| 30 |
+
18 H9 9.9510 -10.6607 25.6501 H 1 BAM 0.3181
|
| 31 |
+
@<TRIPOS>BOND
|
| 32 |
+
1 7 1 1
|
| 33 |
+
2 1 6 ar
|
| 34 |
+
3 1 2 ar
|
| 35 |
+
4 2 3 ar
|
| 36 |
+
5 3 4 ar
|
| 37 |
+
6 4 5 ar
|
| 38 |
+
7 6 5 ar
|
| 39 |
+
8 7 9 ar
|
| 40 |
+
9 7 8 ar
|
| 41 |
+
10 2 10 1
|
| 42 |
+
11 3 11 1
|
| 43 |
+
12 4 12 1
|
| 44 |
+
13 5 13 1
|
| 45 |
+
14 6 14 1
|
| 46 |
+
15 8 15 1
|
| 47 |
+
16 8 16 1
|
| 48 |
+
17 9 17 1
|
| 49 |
+
18 9 18 1
|
| 50 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 51 |
+
1 BAM 1
|
| 52 |
+
|
1c5o/1c5o_ligand.sdf
ADDED
|
@@ -0,0 +1,40 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1c5o_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
17 17 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
11.8270 -11.7370 23.1510 C 0 0 0 0 0
|
| 6 |
+
12.2520 -12.9160 22.5400 C 0 0 0 0 0
|
| 7 |
+
13.1770 -12.8950 21.5060 C 0 0 0 0 0
|
| 8 |
+
13.7030 -11.6970 21.0520 C 0 0 0 0 0
|
| 9 |
+
13.3090 -10.5250 21.6260 C 0 0 0 0 0
|
| 10 |
+
12.3830 -10.5490 22.6610 C 0 0 0 0 0
|
| 11 |
+
10.9010 -11.7410 24.2070 C 0 0 0 0 0
|
| 12 |
+
10.3210 -12.8610 24.5160 N 0 0 0 0 0
|
| 13 |
+
10.6290 -10.6390 24.8750 N 0 0 0 0 0
|
| 14 |
+
11.8507 -13.8706 22.8805 H 0 0 0 0 0
|
| 15 |
+
13.4930 -13.8314 21.0461 H 0 0 0 0 0
|
| 16 |
+
14.4291 -11.6913 20.2390 H 0 0 0 0 0
|
| 17 |
+
13.7172 -9.5770 21.2757 H 0 0 0 0 0
|
| 18 |
+
12.0766 -9.6043 23.1102 H 0 0 0 0 0
|
| 19 |
+
9.6482 -12.8926 25.2820 H 0 0 0 0 0
|
| 20 |
+
9.9576 -10.6605 25.6426 H 0 0 0 0 0
|
| 21 |
+
11.0898 -9.7641 24.6248 H 0 0 0 0 0
|
| 22 |
+
7 1 1 0 0 0
|
| 23 |
+
1 6 4 0 0 0
|
| 24 |
+
1 2 4 0 0 0
|
| 25 |
+
2 3 4 0 0 0
|
| 26 |
+
3 4 4 0 0 0
|
| 27 |
+
4 5 4 0 0 0
|
| 28 |
+
6 5 4 0 0 0
|
| 29 |
+
7 9 1 0 0 0
|
| 30 |
+
7 8 2 0 0 0
|
| 31 |
+
2 10 1 0 0 0
|
| 32 |
+
3 11 1 0 0 0
|
| 33 |
+
4 12 1 0 0 0
|
| 34 |
+
5 13 1 0 0 0
|
| 35 |
+
6 14 1 0 0 0
|
| 36 |
+
8 15 1 0 0 0
|
| 37 |
+
9 16 1 0 0 0
|
| 38 |
+
9 17 1 0 0 0
|
| 39 |
+
M END
|
| 40 |
+
$$$$
|
1c5o/1c5o_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1c5o/1c5o_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1em6/1em6_ligand.mol2
ADDED
|
@@ -0,0 +1,135 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1em6_ligand
|
| 7 |
+
58 61 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C0 -6.1280 35.0740 73.0490 C.ar 1 CP4 -0.0169
|
| 14 |
+
2 C1 -4.8670 34.6920 73.5100 C.ar 1 CP4 0.0680
|
| 15 |
+
3 C2 -5.8140 35.7050 71.7150 C.2 1 CP4 -0.0391
|
| 16 |
+
4 C3 -7.3100 34.8440 73.7970 C.ar 1 CP4 -0.0571
|
| 17 |
+
5 N4 -3.9470 35.0350 72.5920 N.pl3 1 CP4 -0.2669
|
| 18 |
+
6 C5 -4.7000 34.0420 74.7690 C.ar 1 CP4 -0.0398
|
| 19 |
+
7 C6 -4.4840 35.6220 71.5460 C.2 1 CP4 0.1322
|
| 20 |
+
8 C7 -7.1730 34.1980 75.0640 C.ar 1 CP4 0.0253
|
| 21 |
+
9 C8 -5.8840 33.8020 75.5470 C.ar 1 CP4 -0.0600
|
| 22 |
+
10 C9 -3.6730 36.1100 70.3930 C.2 1 CP4 0.2269
|
| 23 |
+
11 CL10 -8.5880 33.8840 76.0230 Cl 1 CP4 -0.0811
|
| 24 |
+
12 N11 -4.2650 36.7460 69.3280 N.am 1 CP4 -0.2827
|
| 25 |
+
13 O12 -2.4520 35.9340 70.4660 O.2 1 CP4 -0.3841
|
| 26 |
+
14 C13 -3.4750 37.3030 68.2180 C.3 1 CP4 0.0536
|
| 27 |
+
15 C14 -3.6630 36.5930 66.8670 C.3 1 CP4 0.0678
|
| 28 |
+
16 O15 -3.0110 35.3100 67.0030 O.3 1 CP4 -0.3755
|
| 29 |
+
17 C16 -1.6740 35.2240 66.4440 C.3 1 CP4 0.0711
|
| 30 |
+
18 C17 -1.4970 33.7590 65.9740 C.3 1 CP4 0.0711
|
| 31 |
+
19 O18 -2.4980 33.4600 64.9830 O.3 1 CP4 -0.3755
|
| 32 |
+
20 C19 -2.9110 32.0760 64.9520 C.3 1 CP4 0.0678
|
| 33 |
+
21 C20 -2.2180 31.3660 63.7530 C.3 1 CP4 0.0536
|
| 34 |
+
22 N21 -2.7510 31.7670 62.4360 N.am 1 CP4 -0.2827
|
| 35 |
+
23 C22 -2.0580 32.5990 61.6040 C.2 1 CP4 0.2269
|
| 36 |
+
24 C23 -2.5830 32.9810 60.2520 C.2 1 CP4 0.1322
|
| 37 |
+
25 O24 -0.9590 33.0560 61.9080 O.2 1 CP4 -0.3841
|
| 38 |
+
26 N25 -1.8460 33.6570 59.3900 N.pl3 1 CP4 -0.2669
|
| 39 |
+
27 C26 -3.7930 32.7110 59.7020 C.2 1 CP4 -0.0391
|
| 40 |
+
28 C27 -2.5020 33.8780 58.2300 C.ar 1 CP4 0.0680
|
| 41 |
+
29 C28 -3.7850 33.3100 58.3180 C.ar 1 CP4 -0.0169
|
| 42 |
+
30 C29 -2.0660 34.5620 57.0560 C.ar 1 CP4 -0.0398
|
| 43 |
+
31 C30 -4.7110 33.3750 57.2460 C.ar 1 CP4 -0.0571
|
| 44 |
+
32 C31 -2.9880 34.6370 55.9630 C.ar 1 CP4 -0.0600
|
| 45 |
+
33 C32 -4.2950 34.0490 56.0560 C.ar 1 CP4 0.0253
|
| 46 |
+
34 CL33 -5.3900 34.1520 54.7060 Cl 1 CP4 -0.0811
|
| 47 |
+
35 H1 -6.5294 36.1441 71.0212 H 1 CP4 0.0400
|
| 48 |
+
36 H2 -8.2810 35.1468 73.4220 H 1 CP4 0.0564
|
| 49 |
+
37 H3 -2.9377 34.8582 72.6963 H 1 CP4 0.2262
|
| 50 |
+
38 H4 -3.7207 33.7417 75.1239 H 1 CP4 0.0550
|
| 51 |
+
39 H5 -5.8006 33.3150 76.5118 H 1 CP4 0.0556
|
| 52 |
+
40 H6 -5.2610 36.8328 69.3067 H 1 CP4 0.1842
|
| 53 |
+
41 H7 -2.4113 37.2408 68.4912 H 1 CP4 0.0542
|
| 54 |
+
42 H8 -3.7601 38.3579 68.0918 H 1 CP4 0.0542
|
| 55 |
+
43 H9 -3.1964 37.1762 66.0594 H 1 CP4 0.0580
|
| 56 |
+
44 H10 -4.7330 36.4580 66.6507 H 1 CP4 0.0580
|
| 57 |
+
45 H11 -0.9238 35.4724 67.2092 H 1 CP4 0.0583
|
| 58 |
+
46 H12 -1.5714 35.9128 65.5926 H 1 CP4 0.0583
|
| 59 |
+
47 H13 -1.6129 33.0800 66.8316 H 1 CP4 0.0583
|
| 60 |
+
48 H14 -0.4957 33.6303 65.5371 H 1 CP4 0.0583
|
| 61 |
+
49 H15 -4.0030 32.0198 64.8325 H 1 CP4 0.0580
|
| 62 |
+
50 H16 -2.6190 31.5831 65.8910 H 1 CP4 0.0580
|
| 63 |
+
51 H17 -2.3542 30.2804 63.8666 H 1 CP4 0.0542
|
| 64 |
+
52 H18 -1.1448 31.6058 63.7807 H 1 CP4 0.0542
|
| 65 |
+
53 H19 -3.6429 31.4203 62.1456 H 1 CP4 0.1842
|
| 66 |
+
54 H20 -0.8856 33.9775 59.5794 H 1 CP4 0.2262
|
| 67 |
+
55 H21 -4.6122 32.1667 60.1695 H 1 CP4 0.0400
|
| 68 |
+
56 H22 -1.0790 35.0059 56.9942 H 1 CP4 0.0550
|
| 69 |
+
57 H23 -5.6965 32.9306 57.3259 H 1 CP4 0.0564
|
| 70 |
+
58 H24 -2.6950 35.1453 55.0515 H 1 CP4 0.0556
|
| 71 |
+
@<TRIPOS>BOND
|
| 72 |
+
1 1 2 ar
|
| 73 |
+
2 1 3 1
|
| 74 |
+
3 1 4 ar
|
| 75 |
+
4 2 5 1
|
| 76 |
+
5 2 6 ar
|
| 77 |
+
6 3 7 2
|
| 78 |
+
7 4 8 ar
|
| 79 |
+
8 5 7 1
|
| 80 |
+
9 6 9 ar
|
| 81 |
+
10 7 10 1
|
| 82 |
+
11 8 9 ar
|
| 83 |
+
12 8 11 1
|
| 84 |
+
13 10 12 am
|
| 85 |
+
14 10 13 2
|
| 86 |
+
15 12 14 1
|
| 87 |
+
16 14 15 1
|
| 88 |
+
17 15 16 1
|
| 89 |
+
18 16 17 1
|
| 90 |
+
19 17 18 1
|
| 91 |
+
20 18 19 1
|
| 92 |
+
21 19 20 1
|
| 93 |
+
22 20 21 1
|
| 94 |
+
23 21 22 1
|
| 95 |
+
24 22 23 am
|
| 96 |
+
25 23 24 1
|
| 97 |
+
26 23 25 2
|
| 98 |
+
27 24 26 1
|
| 99 |
+
28 24 27 2
|
| 100 |
+
29 26 28 1
|
| 101 |
+
30 27 29 1
|
| 102 |
+
31 28 29 ar
|
| 103 |
+
32 28 30 ar
|
| 104 |
+
33 29 31 ar
|
| 105 |
+
34 30 32 ar
|
| 106 |
+
35 31 33 ar
|
| 107 |
+
36 32 33 ar
|
| 108 |
+
37 33 34 1
|
| 109 |
+
38 3 35 1
|
| 110 |
+
39 4 36 1
|
| 111 |
+
40 5 37 1
|
| 112 |
+
41 6 38 1
|
| 113 |
+
42 9 39 1
|
| 114 |
+
43 12 40 1
|
| 115 |
+
44 14 41 1
|
| 116 |
+
45 14 42 1
|
| 117 |
+
46 15 43 1
|
| 118 |
+
47 15 44 1
|
| 119 |
+
48 17 45 1
|
| 120 |
+
49 17 46 1
|
| 121 |
+
50 18 47 1
|
| 122 |
+
51 18 48 1
|
| 123 |
+
52 20 49 1
|
| 124 |
+
53 20 50 1
|
| 125 |
+
54 21 51 1
|
| 126 |
+
55 21 52 1
|
| 127 |
+
56 22 53 1
|
| 128 |
+
57 26 54 1
|
| 129 |
+
58 27 55 1
|
| 130 |
+
59 30 56 1
|
| 131 |
+
60 31 57 1
|
| 132 |
+
61 32 58 1
|
| 133 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 134 |
+
1 CP4 1
|
| 135 |
+
|
1em6/1em6_ligand.sdf
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1em6_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
56 59 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-6.1280 35.0740 73.0490 C 0 0 0 0 0
|
| 6 |
+
-4.8670 34.6920 73.5100 C 0 0 0 0 0
|
| 7 |
+
-5.8140 35.7050 71.7150 C 0 0 0 0 0
|
| 8 |
+
-7.3100 34.8440 73.7970 C 0 0 0 0 0
|
| 9 |
+
-3.9470 35.0350 72.5920 N 0 0 0 0 0
|
| 10 |
+
-4.7000 34.0420 74.7690 C 0 0 0 0 0
|
| 11 |
+
-4.4840 35.6220 71.5460 C 0 0 0 0 0
|
| 12 |
+
-7.1730 34.1980 75.0640 C 0 0 0 0 0
|
| 13 |
+
-5.8840 33.8020 75.5470 C 0 0 0 0 0
|
| 14 |
+
-3.6730 36.1100 70.3930 C 0 0 0 0 0
|
| 15 |
+
-8.5880 33.8840 76.0230 Cl 0 0 0 0 0
|
| 16 |
+
-4.2650 36.7460 69.3280 N 0 0 0 0 0
|
| 17 |
+
-2.4520 35.9340 70.4660 O 0 0 0 0 0
|
| 18 |
+
-3.4750 37.3030 68.2180 C 0 0 0 0 0
|
| 19 |
+
-3.6630 36.5930 66.8670 C 0 0 0 0 0
|
| 20 |
+
-3.0110 35.3100 67.0030 O 0 0 0 0 0
|
| 21 |
+
-1.6740 35.2240 66.4440 C 0 0 0 0 0
|
| 22 |
+
-1.4970 33.7590 65.9740 C 0 0 0 0 0
|
| 23 |
+
-2.4980 33.4600 64.9830 O 0 0 0 0 0
|
| 24 |
+
-2.9110 32.0760 64.9520 C 0 0 0 0 0
|
| 25 |
+
-2.2180 31.3660 63.7530 C 0 0 0 0 0
|
| 26 |
+
-2.7510 31.7670 62.4360 N 0 0 0 0 0
|
| 27 |
+
-2.0580 32.5990 61.6040 C 0 0 0 0 0
|
| 28 |
+
-2.5830 32.9810 60.2520 C 0 0 0 0 0
|
| 29 |
+
-0.9590 33.0560 61.9080 O 0 0 0 0 0
|
| 30 |
+
-1.8460 33.6570 59.3900 N 0 0 0 0 0
|
| 31 |
+
-3.7930 32.7110 59.7020 C 0 0 0 0 0
|
| 32 |
+
-2.5020 33.8780 58.2300 C 0 0 0 0 0
|
| 33 |
+
-3.7850 33.3100 58.3180 C 0 0 0 0 0
|
| 34 |
+
-2.0660 34.5620 57.0560 C 0 0 0 0 0
|
| 35 |
+
-4.7110 33.3750 57.2460 C 0 0 0 0 0
|
| 36 |
+
-2.9880 34.6370 55.9630 C 0 0 0 0 0
|
| 37 |
+
-4.2950 34.0490 56.0560 C 0 0 0 0 0
|
| 38 |
+
-5.3900 34.1520 54.7060 Cl 0 0 0 0 0
|
| 39 |
+
-6.5300 36.1445 71.0206 H 0 0 0 0 0
|
| 40 |
+
-8.2863 35.1484 73.4199 H 0 0 0 0 0
|
| 41 |
+
-3.7153 33.7400 75.1258 H 0 0 0 0 0
|
| 42 |
+
-5.8002 33.3123 76.5172 H 0 0 0 0 0
|
| 43 |
+
-5.2809 36.8345 69.3063 H 0 0 0 0 0
|
| 44 |
+
-2.4257 37.1893 68.4902 H 0 0 0 0 0
|
| 45 |
+
-3.8060 38.3325 68.0814 H 0 0 0 0 0
|
| 46 |
+
-3.2318 37.1726 66.0508 H 0 0 0 0 0
|
| 47 |
+
-4.7191 36.4775 66.6230 H 0 0 0 0 0
|
| 48 |
+
-0.9202 35.4936 67.1837 H 0 0 0 0 0
|
| 49 |
+
-1.5485 35.9209 65.6153 H 0 0 0 0 0
|
| 50 |
+
-1.6078 33.0847 66.8232 H 0 0 0 0 0
|
| 51 |
+
-0.5039 33.6285 65.5441 H 0 0 0 0 0
|
| 52 |
+
-3.9934 32.0183 64.8371 H 0 0 0 0 0
|
| 53 |
+
-2.6256 31.5867 65.8833 H 0 0 0 0 0
|
| 54 |
+
-2.3931 30.2958 63.8630 H 0 0 0 0 0
|
| 55 |
+
-1.1640 31.6429 63.7757 H 0 0 0 0 0
|
| 56 |
+
-3.6607 31.4133 62.1398 H 0 0 0 0 0
|
| 57 |
+
-4.6130 32.1662 60.1700 H 0 0 0 0 0
|
| 58 |
+
-1.0735 35.0083 56.9939 H 0 0 0 0 0
|
| 59 |
+
-5.7020 32.9282 57.3263 H 0 0 0 0 0
|
| 60 |
+
-2.6934 35.1481 55.0465 H 0 0 0 0 0
|
| 61 |
+
1 2 4 0 0 0
|
| 62 |
+
1 3 4 0 0 0
|
| 63 |
+
1 4 4 0 0 0
|
| 64 |
+
2 5 4 0 0 0
|
| 65 |
+
2 6 4 0 0 0
|
| 66 |
+
3 7 4 0 0 0
|
| 67 |
+
4 8 4 0 0 0
|
| 68 |
+
5 7 4 0 0 0
|
| 69 |
+
6 9 4 0 0 0
|
| 70 |
+
7 10 1 0 0 0
|
| 71 |
+
8 9 4 0 0 0
|
| 72 |
+
8 11 1 0 0 0
|
| 73 |
+
10 12 1 0 0 0
|
| 74 |
+
10 13 2 0 0 0
|
| 75 |
+
12 14 1 0 0 0
|
| 76 |
+
14 15 1 0 0 0
|
| 77 |
+
15 16 1 0 0 0
|
| 78 |
+
16 17 1 0 0 0
|
| 79 |
+
17 18 1 0 0 0
|
| 80 |
+
18 19 1 0 0 0
|
| 81 |
+
19 20 1 0 0 0
|
| 82 |
+
20 21 1 0 0 0
|
| 83 |
+
21 22 1 0 0 0
|
| 84 |
+
22 23 1 0 0 0
|
| 85 |
+
23 24 1 0 0 0
|
| 86 |
+
23 25 2 0 0 0
|
| 87 |
+
24 26 4 0 0 0
|
| 88 |
+
24 27 4 0 0 0
|
| 89 |
+
26 28 4 0 0 0
|
| 90 |
+
27 29 4 0 0 0
|
| 91 |
+
28 29 4 0 0 0
|
| 92 |
+
28 30 4 0 0 0
|
| 93 |
+
29 31 4 0 0 0
|
| 94 |
+
30 32 4 0 0 0
|
| 95 |
+
31 33 4 0 0 0
|
| 96 |
+
32 33 4 0 0 0
|
| 97 |
+
33 34 1 0 0 0
|
| 98 |
+
3 35 1 0 0 0
|
| 99 |
+
4 36 1 0 0 0
|
| 100 |
+
6 37 1 0 0 0
|
| 101 |
+
9 38 1 0 0 0
|
| 102 |
+
12 39 1 0 0 0
|
| 103 |
+
14 40 1 0 0 0
|
| 104 |
+
14 41 1 0 0 0
|
| 105 |
+
15 42 1 0 0 0
|
| 106 |
+
15 43 1 0 0 0
|
| 107 |
+
17 44 1 0 0 0
|
| 108 |
+
17 45 1 0 0 0
|
| 109 |
+
18 46 1 0 0 0
|
| 110 |
+
18 47 1 0 0 0
|
| 111 |
+
20 48 1 0 0 0
|
| 112 |
+
20 49 1 0 0 0
|
| 113 |
+
21 50 1 0 0 0
|
| 114 |
+
21 51 1 0 0 0
|
| 115 |
+
22 52 1 0 0 0
|
| 116 |
+
27 53 1 0 0 0
|
| 117 |
+
30 54 1 0 0 0
|
| 118 |
+
31 55 1 0 0 0
|
| 119 |
+
32 56 1 0 0 0
|
| 120 |
+
M END
|
| 121 |
+
$$$$
|
1em6/1em6_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1em6/1em6_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1g85/1g85_ligand.mol2
ADDED
|
@@ -0,0 +1,69 @@
|
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|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1g85_ligand
|
| 7 |
+
27 26 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 -2.0130 -1.2270 3.9210 C.3 1 3OL -0.0629
|
| 14 |
+
2 C2 -1.2750 0.0060 3.7440 C.3 1 3OL -0.0297
|
| 15 |
+
3 C3 0.2220 0.1050 3.9100 C.3 1 3OL 0.0550
|
| 16 |
+
4 O1 0.6870 1.3980 3.3500 O.3 1 3OL -0.3918
|
| 17 |
+
5 C4 0.4690 0.0270 5.3980 C.3 1 3OL -0.0269
|
| 18 |
+
6 C5 0.8580 -1.3840 5.8140 C.3 1 3OL -0.0507
|
| 19 |
+
7 C6 1.2060 -1.3970 7.3140 C.3 1 3OL -0.0532
|
| 20 |
+
8 C7 0.0140 -1.7440 8.1800 C.3 1 3OL -0.0559
|
| 21 |
+
9 C8 0.2660 -3.0670 8.9470 C.3 1 3OL -0.0653
|
| 22 |
+
10 H1 -3.0832 -1.0420 3.7464 H 1 3OL 0.0231
|
| 23 |
+
11 H2 -1.8675 -1.5975 4.9464 H 1 3OL 0.0231
|
| 24 |
+
12 H3 -1.6491 -1.9782 3.2046 H 1 3OL 0.0231
|
| 25 |
+
13 H4 -1.7061 0.7214 4.4598 H 1 3OL 0.0287
|
| 26 |
+
14 H5 -1.4877 0.3406 2.7180 H 1 3OL 0.0287
|
| 27 |
+
15 H6 0.7283 -0.7244 3.3946 H 1 3OL 0.0593
|
| 28 |
+
16 H7 1.6291 1.4655 3.4520 H 1 3OL 0.2098
|
| 29 |
+
17 H8 -0.4482 0.3188 5.9305 H 1 3OL 0.0290
|
| 30 |
+
18 H9 1.2829 0.7175 5.6640 H 1 3OL 0.0290
|
| 31 |
+
19 H10 1.7322 -1.7106 5.2316 H 1 3OL 0.0266
|
| 32 |
+
20 H11 0.0165 -2.0671 5.6265 H 1 3OL 0.0266
|
| 33 |
+
21 H12 1.5723 -0.4001 7.6003 H 1 3OL 0.0265
|
| 34 |
+
22 H13 1.9968 -2.1418 7.4867 H 1 3OL 0.0265
|
| 35 |
+
23 H14 -0.8751 -1.8590 7.5426 H 1 3OL 0.0263
|
| 36 |
+
24 H15 -0.1559 -0.9331 8.9035 H 1 3OL 0.0263
|
| 37 |
+
25 H16 -0.6097 -3.3022 9.5698 H 1 3OL 0.0230
|
| 38 |
+
26 H17 1.1528 -2.9559 9.5883 H 1 3OL 0.0230
|
| 39 |
+
27 H18 0.4336 -3.8819 8.2274 H 1 3OL 0.0230
|
| 40 |
+
@<TRIPOS>BOND
|
| 41 |
+
1 1 2 1
|
| 42 |
+
2 2 3 1
|
| 43 |
+
3 3 4 1
|
| 44 |
+
4 3 5 1
|
| 45 |
+
5 5 6 1
|
| 46 |
+
6 6 7 1
|
| 47 |
+
7 7 8 1
|
| 48 |
+
8 8 9 1
|
| 49 |
+
9 1 10 1
|
| 50 |
+
10 1 11 1
|
| 51 |
+
11 1 12 1
|
| 52 |
+
12 2 13 1
|
| 53 |
+
13 2 14 1
|
| 54 |
+
14 3 15 1
|
| 55 |
+
15 4 16 1
|
| 56 |
+
16 5 17 1
|
| 57 |
+
17 5 18 1
|
| 58 |
+
18 6 19 1
|
| 59 |
+
19 6 20 1
|
| 60 |
+
20 7 21 1
|
| 61 |
+
21 7 22 1
|
| 62 |
+
22 8 23 1
|
| 63 |
+
23 8 24 1
|
| 64 |
+
24 9 25 1
|
| 65 |
+
25 9 26 1
|
| 66 |
+
26 9 27 1
|
| 67 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 68 |
+
1 3OL 1
|
| 69 |
+
|
1g85/1g85_ligand.sdf
ADDED
|
@@ -0,0 +1,59 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1g85_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
27 26 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-2.0130 -1.2270 3.9210 C 0 0 0 0 0
|
| 6 |
+
-1.2750 0.0060 3.7440 C 0 0 0 0 0
|
| 7 |
+
0.2220 0.1050 3.9100 C 0 0 0 0 0
|
| 8 |
+
0.6870 1.3980 3.3500 O 0 0 0 0 0
|
| 9 |
+
0.4690 0.0270 5.3980 C 0 0 0 0 0
|
| 10 |
+
0.8580 -1.3840 5.8140 C 0 0 0 0 0
|
| 11 |
+
1.2060 -1.3970 7.3140 C 0 0 0 0 0
|
| 12 |
+
0.0140 -1.7440 8.1800 C 0 0 0 0 0
|
| 13 |
+
0.2660 -3.0670 8.9470 C 0 0 0 0 0
|
| 14 |
+
-1.6515 -1.9705 3.2106 H 0 0 0 0 0
|
| 15 |
+
-1.8679 -1.5931 4.9374 H 0 0 0 0 0
|
| 16 |
+
-3.0732 -1.0424 3.7478 H 0 0 0 0 0
|
| 17 |
+
-1.6543 0.6376 4.5473 H 0 0 0 0 0
|
| 18 |
+
-1.4212 0.2311 2.6876 H 0 0 0 0 0
|
| 19 |
+
0.7616 -0.6854 3.3883 H 0 0 0 0 0
|
| 20 |
+
0.5164 1.4162 2.4055 H 0 0 0 0 0
|
| 21 |
+
-0.4471 0.3048 5.9192 H 0 0 0 0 0
|
| 22 |
+
1.2847 0.7037 5.6526 H 0 0 0 0 0
|
| 23 |
+
1.7238 -1.7082 5.2365 H 0 0 0 0 0
|
| 24 |
+
0.0246 -2.0613 5.6277 H 0 0 0 0 0
|
| 25 |
+
1.5443 -0.3984 7.5904 H 0 0 0 0 0
|
| 26 |
+
1.9724 -2.1550 7.4758 H 0 0 0 0 0
|
| 27 |
+
-0.8624 -1.8655 7.5434 H 0 0 0 0 0
|
| 28 |
+
-0.1452 -0.9420 8.9008 H 0 0 0 0 0
|
| 29 |
+
0.4320 -3.8736 8.2328 H 0 0 0 0 0
|
| 30 |
+
1.1449 -2.9556 9.5820 H 0 0 0 0 0
|
| 31 |
+
-0.6023 -3.2990 9.5637 H 0 0 0 0 0
|
| 32 |
+
1 2 1 0 0 0
|
| 33 |
+
2 3 1 0 0 0
|
| 34 |
+
3 4 1 0 0 0
|
| 35 |
+
3 5 1 0 0 0
|
| 36 |
+
5 6 1 0 0 0
|
| 37 |
+
6 7 1 0 0 0
|
| 38 |
+
7 8 1 0 0 0
|
| 39 |
+
8 9 1 0 0 0
|
| 40 |
+
1 10 1 0 0 0
|
| 41 |
+
1 11 1 0 0 0
|
| 42 |
+
1 12 1 0 0 0
|
| 43 |
+
2 13 1 0 0 0
|
| 44 |
+
2 14 1 0 0 0
|
| 45 |
+
3 15 1 0 0 0
|
| 46 |
+
4 16 1 0 0 0
|
| 47 |
+
5 17 1 0 0 0
|
| 48 |
+
5 18 1 0 0 0
|
| 49 |
+
6 19 1 0 0 0
|
| 50 |
+
6 20 1 0 0 0
|
| 51 |
+
7 21 1 0 0 0
|
| 52 |
+
7 22 1 0 0 0
|
| 53 |
+
8 23 1 0 0 0
|
| 54 |
+
8 24 1 0 0 0
|
| 55 |
+
9 25 1 0 0 0
|
| 56 |
+
9 26 1 0 0 0
|
| 57 |
+
9 27 1 0 0 0
|
| 58 |
+
M END
|
| 59 |
+
$$$$
|
1g85/1g85_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1g85/1g85_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1h3a/1h3a_ligand.mol2
ADDED
|
@@ -0,0 +1,122 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1h3a_ligand
|
| 7 |
+
52 54 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C3A 63.1990 69.3230 57.6810 C.2 1 R04 -0.1125
|
| 14 |
+
2 C2A 62.3130 69.2220 58.6800 C.2 1 R04 -0.0447
|
| 15 |
+
3 C1A 61.7620 70.4210 59.4260 C.3 1 R04 -0.0031
|
| 16 |
+
4 N1 62.8440 71.3720 59.8170 N.4 1 R04 0.2555
|
| 17 |
+
5 C1B 63.6060 70.9250 61.0380 C.3 1 R04 -0.0135
|
| 18 |
+
6 C2B 62.8450 70.9730 62.3540 C.2 1 R04 -0.0518
|
| 19 |
+
7 C3B 62.7170 69.9070 63.1650 C.2 1 R04 -0.0639
|
| 20 |
+
8 C4B 61.9670 69.9620 64.4810 C.3 1 R04 0.0872
|
| 21 |
+
9 O 62.5860 69.0430 65.4160 O.3 1 R04 -0.3107
|
| 22 |
+
10 C6C 63.5370 69.5900 66.3400 C.ar 1 R04 0.1208
|
| 23 |
+
11 C7C 63.9490 70.9650 66.2660 C.ar 1 R04 -0.0075
|
| 24 |
+
12 C7P 64.8930 71.4390 67.2010 C.ar 1 R04 0.0804
|
| 25 |
+
13 N1C 65.4050 72.6690 67.3070 N.pl3 1 R04 -0.2075
|
| 26 |
+
14 N2C 66.1870 72.6720 68.2410 N.2 1 R04 -0.2009
|
| 27 |
+
15 C3C 66.2800 71.4860 68.8450 C.2 1 R04 0.0588
|
| 28 |
+
16 C3P 65.4230 70.5940 68.1900 C.ar 1 R04 0.0076
|
| 29 |
+
17 C4C 65.0300 69.2140 68.2950 C.ar 1 R04 -0.0350
|
| 30 |
+
18 C5C 64.0740 68.7300 67.3470 C.ar 1 R04 0.1519
|
| 31 |
+
19 C1D 67.2010 71.2800 70.0320 C.ar 1 R04 -0.0084
|
| 32 |
+
20 C6D 67.6540 69.9860 70.4470 C.ar 1 R04 -0.0526
|
| 33 |
+
21 C5D 68.5200 69.8510 71.5710 C.ar 1 R04 -0.0532
|
| 34 |
+
22 C4D 68.9380 71.0120 72.2840 C.ar 1 R04 0.0115
|
| 35 |
+
23 C3D 68.4880 72.2990 71.8690 C.ar 1 R04 -0.0532
|
| 36 |
+
24 C2D 67.6280 72.4250 70.7540 C.ar 1 R04 -0.0526
|
| 37 |
+
25 F 63.6830 67.4580 67.4060 F 1 R04 -0.1958
|
| 38 |
+
26 BR27 70.0640 70.8500 73.7520 Br 1 R04 -0.0509
|
| 39 |
+
27 C1E 65.1030 73.8280 66.4620 C.3 1 R04 0.0548
|
| 40 |
+
28 C1F 62.3000 72.7590 59.9970 C.3 1 R04 -0.0403
|
| 41 |
+
29 H1 63.5603 68.4257 57.1808 H 1 R04 0.0292
|
| 42 |
+
30 H2 63.5582 70.3025 57.3687 H 1 R04 0.0292
|
| 43 |
+
31 H3 61.9715 68.2296 58.9708 H 1 R04 0.0725
|
| 44 |
+
32 H4 61.2493 70.0712 60.3342 H 1 R04 0.0997
|
| 45 |
+
33 H5 61.0438 70.9449 58.7782 H 1 R04 0.0997
|
| 46 |
+
34 H6 63.5013 71.4024 59.0534 H 1 R04 0.2060
|
| 47 |
+
35 H7 64.4910 71.5707 61.1374 H 1 R04 0.0939
|
| 48 |
+
36 H8 63.9269 69.8859 60.8727 H 1 R04 0.0939
|
| 49 |
+
37 H9 62.3829 71.9125 62.6534 H 1 R04 0.0503
|
| 50 |
+
38 H10 63.1716 68.9646 62.8630 H 1 R04 0.0478
|
| 51 |
+
39 H11 60.9179 69.6732 64.3199 H 1 R04 0.0738
|
| 52 |
+
40 H12 62.0080 70.9837 64.8864 H 1 R04 0.0738
|
| 53 |
+
41 H13 63.5427 71.6242 65.5074 H 1 R04 0.0454
|
| 54 |
+
42 H14 65.4416 68.5672 69.0613 H 1 R04 0.0553
|
| 55 |
+
43 H15 67.3362 69.1040 69.9028 H 1 R04 0.0619
|
| 56 |
+
44 H16 68.8592 68.8696 71.8821 H 1 R04 0.0640
|
| 57 |
+
45 H17 68.8058 73.1833 72.4095 H 1 R04 0.0640
|
| 58 |
+
46 H18 67.2905 73.4082 70.4467 H 1 R04 0.0619
|
| 59 |
+
47 H19 65.6870 74.6945 66.8057 H 1 R04 0.0579
|
| 60 |
+
48 H20 64.0297 74.0600 66.5276 H 1 R04 0.0579
|
| 61 |
+
49 H21 65.3656 73.5994 65.4186 H 1 R04 0.0579
|
| 62 |
+
50 H22 61.7502 73.0574 59.0922 H 1 R04 0.0778
|
| 63 |
+
51 H23 63.1307 73.4593 60.1689 H 1 R04 0.0778
|
| 64 |
+
52 H24 61.6203 72.7770 60.8617 H 1 R04 0.0778
|
| 65 |
+
@<TRIPOS>BOND
|
| 66 |
+
1 1 2 2
|
| 67 |
+
2 2 3 1
|
| 68 |
+
3 3 4 1
|
| 69 |
+
4 4 5 1
|
| 70 |
+
5 4 28 1
|
| 71 |
+
6 5 6 1
|
| 72 |
+
7 6 7 2
|
| 73 |
+
8 7 8 1
|
| 74 |
+
9 8 9 1
|
| 75 |
+
10 9 10 1
|
| 76 |
+
11 10 11 ar
|
| 77 |
+
12 10 18 ar
|
| 78 |
+
13 11 12 ar
|
| 79 |
+
14 12 13 1
|
| 80 |
+
15 12 16 ar
|
| 81 |
+
16 13 14 1
|
| 82 |
+
17 13 27 1
|
| 83 |
+
18 14 15 2
|
| 84 |
+
19 15 16 1
|
| 85 |
+
20 15 19 1
|
| 86 |
+
21 16 17 ar
|
| 87 |
+
22 17 18 ar
|
| 88 |
+
23 18 25 1
|
| 89 |
+
24 19 20 ar
|
| 90 |
+
25 19 24 ar
|
| 91 |
+
26 20 21 ar
|
| 92 |
+
27 21 22 ar
|
| 93 |
+
28 22 23 ar
|
| 94 |
+
29 22 26 1
|
| 95 |
+
30 23 24 ar
|
| 96 |
+
31 1 29 1
|
| 97 |
+
32 1 30 1
|
| 98 |
+
33 2 31 1
|
| 99 |
+
34 3 32 1
|
| 100 |
+
35 3 33 1
|
| 101 |
+
36 4 34 1
|
| 102 |
+
37 5 35 1
|
| 103 |
+
38 5 36 1
|
| 104 |
+
39 6 37 1
|
| 105 |
+
40 7 38 1
|
| 106 |
+
41 8 39 1
|
| 107 |
+
42 8 40 1
|
| 108 |
+
43 11 41 1
|
| 109 |
+
44 17 42 1
|
| 110 |
+
45 20 43 1
|
| 111 |
+
46 21 44 1
|
| 112 |
+
47 23 45 1
|
| 113 |
+
48 24 46 1
|
| 114 |
+
49 27 47 1
|
| 115 |
+
50 27 48 1
|
| 116 |
+
51 27 49 1
|
| 117 |
+
52 28 50 1
|
| 118 |
+
53 28 51 1
|
| 119 |
+
54 28 52 1
|
| 120 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 121 |
+
1 R04 1
|
| 122 |
+
|
1h3a/1h3a_ligand.sdf
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1h3a_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
52 54 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
63.1990 69.3230 57.6810 C 0 0 0 0 0
|
| 6 |
+
62.3130 69.2220 58.6800 C 0 0 0 0 0
|
| 7 |
+
61.7620 70.4210 59.4260 C 0 0 0 0 0
|
| 8 |
+
62.8440 71.3720 59.8170 N 0 3 0 0 0
|
| 9 |
+
63.6060 70.9250 61.0380 C 0 0 0 0 0
|
| 10 |
+
62.8450 70.9730 62.3540 C 0 0 0 0 0
|
| 11 |
+
62.7170 69.9070 63.1650 C 0 0 0 0 0
|
| 12 |
+
61.9670 69.9620 64.4810 C 0 0 0 0 0
|
| 13 |
+
62.5860 69.0430 65.4160 O 0 0 0 0 0
|
| 14 |
+
63.5370 69.5900 66.3400 C 0 0 0 0 0
|
| 15 |
+
63.9490 70.9650 66.2660 C 0 0 0 0 0
|
| 16 |
+
64.8930 71.4390 67.2010 C 0 0 0 0 0
|
| 17 |
+
65.4050 72.6690 67.3070 N 0 0 0 0 0
|
| 18 |
+
66.1870 72.6720 68.2410 N 0 0 0 0 0
|
| 19 |
+
66.2800 71.4860 68.8450 C 0 0 0 0 0
|
| 20 |
+
65.4230 70.5940 68.1900 C 0 0 0 0 0
|
| 21 |
+
65.0300 69.2140 68.2950 C 0 0 0 0 0
|
| 22 |
+
64.0740 68.7300 67.3470 C 0 0 0 0 0
|
| 23 |
+
67.2010 71.2800 70.0320 C 0 0 0 0 0
|
| 24 |
+
67.6540 69.9860 70.4470 C 0 0 0 0 0
|
| 25 |
+
68.5200 69.8510 71.5710 C 0 0 0 0 0
|
| 26 |
+
68.9380 71.0120 72.2840 C 0 0 0 0 0
|
| 27 |
+
68.4880 72.2990 71.8690 C 0 0 0 0 0
|
| 28 |
+
67.6280 72.4250 70.7540 C 0 0 0 0 0
|
| 29 |
+
63.6830 67.4580 67.4060 F 0 0 0 0 0
|
| 30 |
+
70.0640 70.8500 73.7520 Br 0 0 0 0 0
|
| 31 |
+
65.1030 73.8280 66.4620 C 0 0 0 0 0
|
| 32 |
+
62.3000 72.7590 59.9970 C 0 0 0 0 0
|
| 33 |
+
63.5585 70.3034 57.3685 H 0 0 0 0 0
|
| 34 |
+
63.5606 68.4248 57.1804 H 0 0 0 0 0
|
| 35 |
+
61.9712 68.2287 58.9710 H 0 0 0 0 0
|
| 36 |
+
61.2721 70.0662 60.3327 H 0 0 0 0 0
|
| 37 |
+
61.0656 70.9435 58.7702 H 0 0 0 0 0
|
| 38 |
+
63.5138 71.3829 59.0478 H 0 0 0 0 0
|
| 39 |
+
64.4446 71.6132 61.1442 H 0 0 0 0 0
|
| 40 |
+
63.8639 69.8791 60.8717 H 0 0 0 0 0
|
| 41 |
+
62.3824 71.9134 62.6537 H 0 0 0 0 0
|
| 42 |
+
63.1720 68.9638 62.8627 H 0 0 0 0 0
|
| 43 |
+
60.9261 69.6798 64.3229 H 0 0 0 0 0
|
| 44 |
+
62.0032 70.9747 64.8826 H 0 0 0 0 0
|
| 45 |
+
63.5405 71.6278 65.5032 H 0 0 0 0 0
|
| 46 |
+
65.4438 68.5636 69.0656 H 0 0 0 0 0
|
| 47 |
+
67.3345 69.0991 69.8998 H 0 0 0 0 0
|
| 48 |
+
68.8611 68.8641 71.8839 H 0 0 0 0 0
|
| 49 |
+
68.8076 73.1882 72.4125 H 0 0 0 0 0
|
| 50 |
+
67.2887 73.4137 70.4450 H 0 0 0 0 0
|
| 51 |
+
65.3636 73.6002 65.4284 H 0 0 0 0 0
|
| 52 |
+
64.0393 74.0568 66.5279 H 0 0 0 0 0
|
| 53 |
+
65.6823 74.6858 66.8035 H 0 0 0 0 0
|
| 54 |
+
61.6268 72.7755 60.8541 H 0 0 0 0 0
|
| 55 |
+
63.1241 73.4518 60.1673 H 0 0 0 0 0
|
| 56 |
+
61.7554 73.0536 59.0999 H 0 0 0 0 0
|
| 57 |
+
1 2 2 0 0 0
|
| 58 |
+
2 3 1 0 0 0
|
| 59 |
+
3 4 1 0 0 0
|
| 60 |
+
4 5 1 0 0 0
|
| 61 |
+
4 28 1 0 0 0
|
| 62 |
+
5 6 1 0 0 0
|
| 63 |
+
6 7 2 0 0 0
|
| 64 |
+
7 8 1 0 0 0
|
| 65 |
+
8 9 1 0 0 0
|
| 66 |
+
9 10 1 0 0 0
|
| 67 |
+
10 11 4 0 0 0
|
| 68 |
+
10 18 4 0 0 0
|
| 69 |
+
11 12 4 0 0 0
|
| 70 |
+
12 13 4 0 0 0
|
| 71 |
+
12 16 4 0 0 0
|
| 72 |
+
13 14 4 0 0 0
|
| 73 |
+
13 27 1 0 0 0
|
| 74 |
+
14 15 4 0 0 0
|
| 75 |
+
15 16 4 0 0 0
|
| 76 |
+
15 19 1 0 0 0
|
| 77 |
+
16 17 4 0 0 0
|
| 78 |
+
17 18 4 0 0 0
|
| 79 |
+
18 25 1 0 0 0
|
| 80 |
+
19 20 4 0 0 0
|
| 81 |
+
19 24 4 0 0 0
|
| 82 |
+
20 21 4 0 0 0
|
| 83 |
+
21 22 4 0 0 0
|
| 84 |
+
22 23 4 0 0 0
|
| 85 |
+
22 26 1 0 0 0
|
| 86 |
+
23 24 4 0 0 0
|
| 87 |
+
1 29 1 0 0 0
|
| 88 |
+
1 30 1 0 0 0
|
| 89 |
+
2 31 1 0 0 0
|
| 90 |
+
3 32 1 0 0 0
|
| 91 |
+
3 33 1 0 0 0
|
| 92 |
+
4 34 1 0 0 0
|
| 93 |
+
5 35 1 0 0 0
|
| 94 |
+
5 36 1 0 0 0
|
| 95 |
+
6 37 1 0 0 0
|
| 96 |
+
7 38 1 0 0 0
|
| 97 |
+
8 39 1 0 0 0
|
| 98 |
+
8 40 1 0 0 0
|
| 99 |
+
11 41 1 0 0 0
|
| 100 |
+
17 42 1 0 0 0
|
| 101 |
+
20 43 1 0 0 0
|
| 102 |
+
21 44 1 0 0 0
|
| 103 |
+
23 45 1 0 0 0
|
| 104 |
+
24 46 1 0 0 0
|
| 105 |
+
27 47 1 0 0 0
|
| 106 |
+
27 48 1 0 0 0
|
| 107 |
+
27 49 1 0 0 0
|
| 108 |
+
28 50 1 0 0 0
|
| 109 |
+
28 51 1 0 0 0
|
| 110 |
+
28 52 1 0 0 0
|
| 111 |
+
M END
|
| 112 |
+
$$$$
|
1h3a/1h3a_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1h3a/1h3a_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1nde/1nde_ligand.mol2
ADDED
|
@@ -0,0 +1,145 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1nde_ligand
|
| 7 |
+
63 66 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 110.7370 5.5320 -105.3590 C.ar 1 MON 0.1823
|
| 14 |
+
2 N2 110.9210 4.5570 -104.4530 N.pl3 1 MON -0.2635
|
| 15 |
+
3 N3 109.6060 6.2620 -105.4990 N.ar 1 MON -0.2274
|
| 16 |
+
4 N4 111.6410 5.9560 -106.2990 N.ar 1 MON -0.2351
|
| 17 |
+
5 C5 112.1510 3.7920 -104.3130 C.3 1 MON 0.0757
|
| 18 |
+
6 C6 109.9180 4.1440 -103.4700 C.3 1 MON 0.0757
|
| 19 |
+
7 C7 109.3710 7.2530 -106.3860 C.ar 1 MON 0.1796
|
| 20 |
+
8 C8 111.4330 6.9410 -107.2020 C.ar 1 MON 0.1457
|
| 21 |
+
9 C9 112.1770 2.3680 -103.6560 C.3 1 MON -0.0120
|
| 22 |
+
10 C10 109.8560 2.6970 -102.9320 C.3 1 MON -0.0120
|
| 23 |
+
11 N11 110.3030 7.5170 -107.1710 N.ar 1 MON -0.2352
|
| 24 |
+
12 N12 108.3340 8.0500 -106.6270 N.pl3 1 MON -0.2857
|
| 25 |
+
13 S13 112.2390 7.7050 -108.4440 S.3 1 MON -0.0545
|
| 26 |
+
14 N14 111.1930 2.2550 -102.5700 N.4 1 MON 0.2299
|
| 27 |
+
15 C15 107.0840 8.1290 -106.0060 C.3 1 MON 0.0408
|
| 28 |
+
16 C16 113.6520 7.9070 -109.4800 C.3 1 MON 0.0168
|
| 29 |
+
17 C17 106.3950 9.3140 -106.7320 C.3 1 MON -0.0033
|
| 30 |
+
18 C18 112.5460 8.6530 -110.2420 C.3 1 MON -0.0312
|
| 31 |
+
19 C19 105.0900 9.5030 -106.1080 C.ar 1 MON -0.0517
|
| 32 |
+
20 C20 112.5190 9.4020 -111.5480 C.3 1 MON -0.0180
|
| 33 |
+
21 C21 103.9240 9.4400 -106.8730 C.ar 1 MON -0.0687
|
| 34 |
+
22 C22 105.0330 9.7310 -104.7160 C.ar 1 MON -0.0687
|
| 35 |
+
23 C23 110.9910 9.8030 -111.5100 C.ar 1 MON -0.0427
|
| 36 |
+
24 C24 102.6810 9.6030 -106.2350 C.ar 1 MON -0.0398
|
| 37 |
+
25 C25 103.8050 9.8910 -104.0920 C.ar 1 MON -0.0398
|
| 38 |
+
26 C26 110.5360 11.1320 -111.7190 C.ar 1 MON -0.0597
|
| 39 |
+
27 C27 109.9960 8.7960 -111.2300 C.ar 1 MON -0.0597
|
| 40 |
+
28 C28 102.6240 9.8210 -104.8370 C.ar 1 MON 0.0805
|
| 41 |
+
29 C29 109.1400 11.4420 -111.6570 C.ar 1 MON -0.0546
|
| 42 |
+
30 C30 108.6200 9.1160 -111.1700 C.ar 1 MON -0.0546
|
| 43 |
+
31 O31 101.4320 9.9610 -104.2060 O.3 1 MON -0.3376
|
| 44 |
+
32 C32 108.1900 10.4320 -111.3820 C.ar 1 MON 0.0330
|
| 45 |
+
33 CL33 106.5190 10.8070 -111.3060 Cl 1 MON -0.0771
|
| 46 |
+
34 H1 112.8356 4.4165 -103.7202 H 1 MON 0.0585
|
| 47 |
+
35 H2 112.5538 3.6690 -105.3292 H 1 MON 0.0585
|
| 48 |
+
36 H3 108.9372 4.3472 -103.9247 H 1 MON 0.0585
|
| 49 |
+
37 H4 110.0577 4.7940 -102.5937 H 1 MON 0.0585
|
| 50 |
+
38 H5 113.1814 2.1812 -103.2484 H 1 MON 0.0835
|
| 51 |
+
39 H6 111.9477 1.6158 -104.4251 H 1 MON 0.0835
|
| 52 |
+
40 H7 109.4491 2.0341 -103.7098 H 1 MON 0.0835
|
| 53 |
+
41 H8 109.2064 2.6635 -102.0449 H 1 MON 0.0835
|
| 54 |
+
42 H9 108.4749 8.7188 -107.3976 H 1 MON 0.1898
|
| 55 |
+
43 H10 111.5120 2.8141 -101.7943 H 1 MON 0.2015
|
| 56 |
+
44 H11 111.1415 1.2884 -102.2888 H 1 MON 0.2015
|
| 57 |
+
45 H12 107.1911 8.3351 -104.9308 H 1 MON 0.0549
|
| 58 |
+
46 H13 106.5155 7.1978 -106.1460 H 1 MON 0.0549
|
| 59 |
+
47 H14 114.0571 6.9998 -109.9521 H 1 MON 0.0413
|
| 60 |
+
48 H15 114.4787 8.5137 -109.0820 H 1 MON 0.0413
|
| 61 |
+
49 H16 106.2717 9.0812 -107.8000 H 1 MON 0.0425
|
| 62 |
+
50 H17 107.0003 10.2260 -106.6230 H 1 MON 0.0425
|
| 63 |
+
51 H18 112.1996 9.4019 -109.5146 H 1 MON 0.0297
|
| 64 |
+
52 H19 111.7698 7.8852 -110.3756 H 1 MON 0.0297
|
| 65 |
+
53 H20 112.7640 8.7595 -112.4065 H 1 MON 0.0427
|
| 66 |
+
54 H21 113.1840 10.2782 -111.5442 H 1 MON 0.0427
|
| 67 |
+
55 H22 103.9757 9.2681 -107.9420 H 1 MON 0.0530
|
| 68 |
+
56 H23 105.9474 9.7809 -104.1360 H 1 MON 0.0530
|
| 69 |
+
57 H24 101.7657 9.5617 -106.8142 H 1 MON 0.0525
|
| 70 |
+
58 H25 103.7606 10.0708 -103.0239 H 1 MON 0.0525
|
| 71 |
+
59 H26 111.2522 11.9186 -111.9273 H 1 MON 0.0557
|
| 72 |
+
60 H27 110.3102 7.7722 -111.0621 H 1 MON 0.0557
|
| 73 |
+
61 H28 108.8082 12.4606 -111.8224 H 1 MON 0.0606
|
| 74 |
+
62 H29 107.8943 8.3389 -110.9589 H 1 MON 0.0606
|
| 75 |
+
63 H30 101.3393 9.2786 -103.5516 H 1 MON 0.2458
|
| 76 |
+
@<TRIPOS>BOND
|
| 77 |
+
1 1 2 1
|
| 78 |
+
2 1 3 ar
|
| 79 |
+
3 4 1 ar
|
| 80 |
+
4 2 5 1
|
| 81 |
+
5 2 6 1
|
| 82 |
+
6 7 3 ar
|
| 83 |
+
7 8 4 ar
|
| 84 |
+
8 5 9 1
|
| 85 |
+
9 6 10 1
|
| 86 |
+
10 11 7 ar
|
| 87 |
+
11 7 12 1
|
| 88 |
+
12 8 11 ar
|
| 89 |
+
13 13 8 1
|
| 90 |
+
14 9 14 1
|
| 91 |
+
15 10 14 1
|
| 92 |
+
16 12 15 1
|
| 93 |
+
17 16 13 1
|
| 94 |
+
18 5 34 1
|
| 95 |
+
19 15 17 1
|
| 96 |
+
20 16 18 1
|
| 97 |
+
21 17 19 1
|
| 98 |
+
22 18 20 1
|
| 99 |
+
23 19 21 ar
|
| 100 |
+
24 19 22 ar
|
| 101 |
+
25 20 23 1
|
| 102 |
+
26 21 24 ar
|
| 103 |
+
27 22 25 ar
|
| 104 |
+
28 23 26 ar
|
| 105 |
+
29 23 27 ar
|
| 106 |
+
30 24 28 ar
|
| 107 |
+
31 25 28 ar
|
| 108 |
+
32 26 29 ar
|
| 109 |
+
33 27 30 ar
|
| 110 |
+
34 28 31 1
|
| 111 |
+
35 29 32 ar
|
| 112 |
+
36 30 32 ar
|
| 113 |
+
37 32 33 1
|
| 114 |
+
38 5 35 1
|
| 115 |
+
39 6 36 1
|
| 116 |
+
40 6 37 1
|
| 117 |
+
41 9 38 1
|
| 118 |
+
42 9 39 1
|
| 119 |
+
43 10 40 1
|
| 120 |
+
44 10 41 1
|
| 121 |
+
45 12 42 1
|
| 122 |
+
46 14 43 1
|
| 123 |
+
47 14 44 1
|
| 124 |
+
48 15 45 1
|
| 125 |
+
49 15 46 1
|
| 126 |
+
50 16 47 1
|
| 127 |
+
51 16 48 1
|
| 128 |
+
52 17 49 1
|
| 129 |
+
53 17 50 1
|
| 130 |
+
54 18 51 1
|
| 131 |
+
55 18 52 1
|
| 132 |
+
56 20 53 1
|
| 133 |
+
57 20 54 1
|
| 134 |
+
58 21 55 1
|
| 135 |
+
59 22 56 1
|
| 136 |
+
60 24 57 1
|
| 137 |
+
61 25 58 1
|
| 138 |
+
62 26 59 1
|
| 139 |
+
63 27 60 1
|
| 140 |
+
64 29 61 1
|
| 141 |
+
65 30 62 1
|
| 142 |
+
66 31 63 1
|
| 143 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 144 |
+
1 MON 1
|
| 145 |
+
|
1nde/1nde_ligand.sdf
ADDED
|
@@ -0,0 +1,135 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1nde_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
63 66 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
110.7370 5.5320 -105.3590 C 0 0 0 0 0
|
| 6 |
+
110.9210 4.5570 -104.4530 N 0 0 0 0 0
|
| 7 |
+
109.6060 6.2620 -105.4990 N 0 0 0 0 0
|
| 8 |
+
111.6410 5.9560 -106.2990 N 0 0 0 0 0
|
| 9 |
+
112.1510 3.7920 -104.3130 C 0 0 0 0 0
|
| 10 |
+
109.9180 4.1440 -103.4700 C 0 0 0 0 0
|
| 11 |
+
109.3710 7.2530 -106.3860 C 0 0 0 0 0
|
| 12 |
+
111.4330 6.9410 -107.2020 C 0 0 0 0 0
|
| 13 |
+
112.1770 2.3680 -103.6560 C 0 0 0 0 0
|
| 14 |
+
109.8560 2.6970 -102.9320 C 0 0 0 0 0
|
| 15 |
+
110.3030 7.5170 -107.1710 N 0 0 0 0 0
|
| 16 |
+
108.3340 8.0500 -106.6270 N 0 0 0 0 0
|
| 17 |
+
112.2390 7.7050 -108.4440 S 0 0 0 0 0
|
| 18 |
+
111.1930 2.2550 -102.5700 N 0 3 0 0 0
|
| 19 |
+
107.0840 8.1290 -106.0060 C 0 0 0 0 0
|
| 20 |
+
113.6520 7.9070 -109.4800 C 0 0 0 0 0
|
| 21 |
+
106.3950 9.3140 -106.7320 C 0 0 0 0 0
|
| 22 |
+
112.5460 8.6530 -110.2420 C 0 0 0 0 0
|
| 23 |
+
105.0900 9.5030 -106.1080 C 0 0 0 0 0
|
| 24 |
+
112.5190 9.4020 -111.5480 C 0 0 0 0 0
|
| 25 |
+
103.9240 9.4400 -106.8730 C 0 0 0 0 0
|
| 26 |
+
105.0330 9.7310 -104.7160 C 0 0 0 0 0
|
| 27 |
+
110.9910 9.8030 -111.5100 C 0 0 0 0 0
|
| 28 |
+
102.6810 9.6030 -106.2350 C 0 0 0 0 0
|
| 29 |
+
103.8050 9.8910 -104.0920 C 0 0 0 0 0
|
| 30 |
+
110.5360 11.1320 -111.7190 C 0 0 0 0 0
|
| 31 |
+
109.9960 8.7960 -111.2300 C 0 0 0 0 0
|
| 32 |
+
102.6240 9.8210 -104.8370 C 0 0 0 0 0
|
| 33 |
+
109.1400 11.4420 -111.6570 C 0 0 0 0 0
|
| 34 |
+
108.6200 9.1160 -111.1700 C 0 0 0 0 0
|
| 35 |
+
101.4320 9.9610 -104.2060 O 0 0 0 0 0
|
| 36 |
+
108.1900 10.4320 -111.3820 C 0 0 0 0 0
|
| 37 |
+
106.5190 10.8070 -111.3060 Cl 0 0 0 0 0
|
| 38 |
+
112.7522 4.3972 -103.6345 H 0 0 0 0 0
|
| 39 |
+
112.4530 3.6034 -105.3432 H 0 0 0 0 0
|
| 40 |
+
108.9726 4.2638 -103.9992 H 0 0 0 0 0
|
| 41 |
+
110.1603 4.7375 -102.5884 H 0 0 0 0 0
|
| 42 |
+
113.1701 2.1989 -103.2398 H 0 0 0 0 0
|
| 43 |
+
111.9317 1.6313 -104.4210 H 0 0 0 0 0
|
| 44 |
+
109.4533 2.0403 -103.7031 H 0 0 0 0 0
|
| 45 |
+
109.2127 2.6642 -102.0527 H 0 0 0 0 0
|
| 46 |
+
108.4736 8.7123 -107.3901 H 0 0 0 0 0
|
| 47 |
+
111.5132 2.8541 -101.8091 H 0 0 0 0 0
|
| 48 |
+
111.1279 1.2674 -102.3233 H 0 0 0 0 0
|
| 49 |
+
107.1606 8.2852 -104.9300 H 0 0 0 0 0
|
| 50 |
+
106.5170 7.2017 -106.0877 H 0 0 0 0 0
|
| 51 |
+
114.3222 7.1347 -109.8575 H 0 0 0 0 0
|
| 52 |
+
114.6397 8.2749 -109.2022 H 0 0 0 0 0
|
| 53 |
+
106.2845 9.1005 -107.7952 H 0 0 0 0 0
|
| 54 |
+
106.9964 10.2189 -106.6452 H 0 0 0 0 0
|
| 55 |
+
112.4028 9.4912 -109.5601 H 0 0 0 0 0
|
| 56 |
+
111.9240 7.8018 -110.5191 H 0 0 0 0 0
|
| 57 |
+
112.8453 8.8443 -112.4259 H 0 0 0 0 0
|
| 58 |
+
113.2272 10.2253 -111.6417 H 0 0 0 0 0
|
| 59 |
+
103.9759 9.2672 -107.9480 H 0 0 0 0 0
|
| 60 |
+
105.9525 9.7812 -104.1328 H 0 0 0 0 0
|
| 61 |
+
101.7606 9.5615 -106.8174 H 0 0 0 0 0
|
| 62 |
+
103.7604 10.0718 -103.0180 H 0 0 0 0 0
|
| 63 |
+
111.2562 11.9229 -111.9285 H 0 0 0 0 0
|
| 64 |
+
110.3120 7.7666 -111.0611 H 0 0 0 0 0
|
| 65 |
+
108.8064 12.4663 -111.8234 H 0 0 0 0 0
|
| 66 |
+
107.8903 8.3346 -110.9577 H 0 0 0 0 0
|
| 67 |
+
101.5821 10.1005 -103.2681 H 0 0 0 0 0
|
| 68 |
+
1 2 1 0 0 0
|
| 69 |
+
1 3 4 0 0 0
|
| 70 |
+
4 1 4 0 0 0
|
| 71 |
+
2 5 1 0 0 0
|
| 72 |
+
2 6 1 0 0 0
|
| 73 |
+
7 3 4 0 0 0
|
| 74 |
+
8 4 4 0 0 0
|
| 75 |
+
5 9 1 0 0 0
|
| 76 |
+
6 10 1 0 0 0
|
| 77 |
+
11 7 4 0 0 0
|
| 78 |
+
7 12 1 0 0 0
|
| 79 |
+
8 11 4 0 0 0
|
| 80 |
+
13 8 1 0 0 0
|
| 81 |
+
9 14 1 0 0 0
|
| 82 |
+
10 14 1 0 0 0
|
| 83 |
+
12 15 1 0 0 0
|
| 84 |
+
16 13 1 0 0 0
|
| 85 |
+
15 17 1 0 0 0
|
| 86 |
+
16 18 1 0 0 0
|
| 87 |
+
17 19 1 0 0 0
|
| 88 |
+
18 20 1 0 0 0
|
| 89 |
+
19 21 4 0 0 0
|
| 90 |
+
19 22 4 0 0 0
|
| 91 |
+
20 23 1 0 0 0
|
| 92 |
+
21 24 4 0 0 0
|
| 93 |
+
22 25 4 0 0 0
|
| 94 |
+
23 26 4 0 0 0
|
| 95 |
+
23 27 4 0 0 0
|
| 96 |
+
24 28 4 0 0 0
|
| 97 |
+
25 28 4 0 0 0
|
| 98 |
+
26 29 4 0 0 0
|
| 99 |
+
27 30 4 0 0 0
|
| 100 |
+
28 31 1 0 0 0
|
| 101 |
+
29 32 4 0 0 0
|
| 102 |
+
30 32 4 0 0 0
|
| 103 |
+
32 33 1 0 0 0
|
| 104 |
+
5 34 1 0 0 0
|
| 105 |
+
5 35 1 0 0 0
|
| 106 |
+
6 36 1 0 0 0
|
| 107 |
+
6 37 1 0 0 0
|
| 108 |
+
9 38 1 0 0 0
|
| 109 |
+
9 39 1 0 0 0
|
| 110 |
+
10 40 1 0 0 0
|
| 111 |
+
10 41 1 0 0 0
|
| 112 |
+
12 42 1 0 0 0
|
| 113 |
+
14 43 1 0 0 0
|
| 114 |
+
14 44 1 0 0 0
|
| 115 |
+
15 45 1 0 0 0
|
| 116 |
+
15 46 1 0 0 0
|
| 117 |
+
16 47 1 0 0 0
|
| 118 |
+
16 48 1 0 0 0
|
| 119 |
+
17 49 1 0 0 0
|
| 120 |
+
17 50 1 0 0 0
|
| 121 |
+
18 51 1 0 0 0
|
| 122 |
+
18 52 1 0 0 0
|
| 123 |
+
20 53 1 0 0 0
|
| 124 |
+
20 54 1 0 0 0
|
| 125 |
+
21 55 1 0 0 0
|
| 126 |
+
22 56 1 0 0 0
|
| 127 |
+
24 57 1 0 0 0
|
| 128 |
+
25 58 1 0 0 0
|
| 129 |
+
26 59 1 0 0 0
|
| 130 |
+
27 60 1 0 0 0
|
| 131 |
+
29 61 1 0 0 0
|
| 132 |
+
30 62 1 0 0 0
|
| 133 |
+
31 63 1 0 0 0
|
| 134 |
+
M END
|
| 135 |
+
$$$$
|
1nde/1nde_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1nde/1nde_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ndv/1ndv_ligand.mol2
ADDED
|
@@ -0,0 +1,101 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1ndv_ligand
|
| 7 |
+
41 44 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 45.8910 47.9120 17.0220 N.pl3 1 FR0 -0.2300
|
| 14 |
+
2 C2 45.3540 47.5620 18.2420 C.ar 1 FR0 0.0750
|
| 15 |
+
3 C3 46.2410 48.0930 19.2240 C.ar 1 FR0 0.0112
|
| 16 |
+
4 N4 47.2490 48.7360 18.5330 N.2 1 FR0 -0.3135
|
| 17 |
+
5 C5 47.0230 48.5890 17.2490 C.2 1 FR0 0.2170
|
| 18 |
+
6 C6 44.2280 46.8170 18.6340 C.ar 1 FR0 -0.0448
|
| 19 |
+
7 C7 44.0150 46.6370 20.0250 C.ar 1 FR0 -0.0787
|
| 20 |
+
8 C8 44.9070 47.1630 21.0030 C.ar 1 FR0 -0.0809
|
| 21 |
+
9 C9 46.0220 47.8960 20.6040 C.ar 1 FR0 -0.0694
|
| 22 |
+
10 N10 48.0120 48.9800 16.2160 N.pl3 1 FR0 -0.2497
|
| 23 |
+
11 C11 49.2730 49.6300 16.5560 C.3 1 FR0 0.1124
|
| 24 |
+
12 C12 48.9460 50.9970 17.0030 C.2 1 FR0 0.1080
|
| 25 |
+
13 S15 49.6110 51.8090 18.3630 S.3 1 FR0 0.0475
|
| 26 |
+
14 C16 48.7250 53.3350 17.9660 C.2 1 FR0 0.1088
|
| 27 |
+
15 C17 47.8580 53.1270 16.8110 C.2 1 FR0 -0.0058
|
| 28 |
+
16 C18 47.9940 51.7910 16.2720 C.2 1 FR0 0.0019
|
| 29 |
+
17 C19 48.6830 54.5530 18.5670 C.2 1 FR0 0.1024
|
| 30 |
+
18 N20 49.7550 54.4920 19.6080 N.2 1 FR0 -0.2659
|
| 31 |
+
19 C21 50.1180 55.5990 20.3060 C.2 1 FR0 0.2251
|
| 32 |
+
20 S22 48.9360 56.8070 19.8700 S.3 1 FR0 0.0931
|
| 33 |
+
21 C23 48.1940 55.7730 18.7610 C.2 1 FR0 0.0906
|
| 34 |
+
22 N26 50.9400 55.7150 21.3940 N.pl3 1 FR0 -0.2504
|
| 35 |
+
23 C27 51.1020 54.7290 22.3200 C.cat 1 FR0 0.1427
|
| 36 |
+
24 N28 51.1160 53.4800 21.9470 N.pl3 1 FR0 -0.3551
|
| 37 |
+
25 N29 51.2040 54.9610 23.6260 N.pl3 1 FR0 -0.3551
|
| 38 |
+
26 H1 45.4917 47.6915 16.0985 H 1 FR0 0.2311
|
| 39 |
+
27 H2 43.5486 46.3963 17.9015 H 1 FR0 0.0533
|
| 40 |
+
28 H3 43.1448 46.0809 20.3544 H 1 FR0 0.0513
|
| 41 |
+
29 H4 44.7182 46.9930 22.0568 H 1 FR0 0.0508
|
| 42 |
+
30 H5 46.7066 48.3062 21.3375 H 1 FR0 0.0516
|
| 43 |
+
31 H6 47.8020 48.7865 15.2264 H 1 FR0 0.1952
|
| 44 |
+
32 H7 49.9287 49.6677 15.6736 H 1 FR0 0.0886
|
| 45 |
+
33 H8 49.7766 49.0787 17.3637 H 1 FR0 0.0886
|
| 46 |
+
34 H9 47.1900 53.8848 16.4042 H 1 FR0 0.0805
|
| 47 |
+
35 H10 47.4379 51.4270 15.4093 H 1 FR0 0.0645
|
| 48 |
+
36 H11 47.3175 56.1048 18.2065 H 1 FR0 0.1367
|
| 49 |
+
37 H12 51.4633 56.5933 21.5192 H 1 FR0 0.2140
|
| 50 |
+
38 H13 51.2385 52.7347 22.6473 H 1 FR0 0.1644
|
| 51 |
+
39 H14 51.0046 53.2384 20.9520 H 1 FR0 0.1644
|
| 52 |
+
40 H15 51.1986 55.9286 23.9792 H 1 FR0 0.1644
|
| 53 |
+
41 H16 51.2884 54.1731 24.2840 H 1 FR0 0.1644
|
| 54 |
+
@<TRIPOS>BOND
|
| 55 |
+
1 1 2 1
|
| 56 |
+
2 1 5 1
|
| 57 |
+
3 2 3 ar
|
| 58 |
+
4 2 6 ar
|
| 59 |
+
5 3 4 1
|
| 60 |
+
6 3 9 ar
|
| 61 |
+
7 4 5 2
|
| 62 |
+
8 5 10 1
|
| 63 |
+
9 6 7 ar
|
| 64 |
+
10 7 8 ar
|
| 65 |
+
11 8 9 ar
|
| 66 |
+
12 10 11 1
|
| 67 |
+
13 11 12 1
|
| 68 |
+
14 12 13 1
|
| 69 |
+
15 12 16 2
|
| 70 |
+
16 13 14 1
|
| 71 |
+
17 14 15 2
|
| 72 |
+
18 14 17 1
|
| 73 |
+
19 15 16 1
|
| 74 |
+
20 17 18 1
|
| 75 |
+
21 17 21 2
|
| 76 |
+
22 18 19 2
|
| 77 |
+
23 19 20 1
|
| 78 |
+
24 19 22 1
|
| 79 |
+
25 20 21 1
|
| 80 |
+
26 22 23 ar
|
| 81 |
+
27 23 24 ar
|
| 82 |
+
28 23 25 ar
|
| 83 |
+
29 1 26 1
|
| 84 |
+
30 6 27 1
|
| 85 |
+
31 7 28 1
|
| 86 |
+
32 8 29 1
|
| 87 |
+
33 9 30 1
|
| 88 |
+
34 10 31 1
|
| 89 |
+
35 11 32 1
|
| 90 |
+
36 11 33 1
|
| 91 |
+
37 15 34 1
|
| 92 |
+
38 16 35 1
|
| 93 |
+
39 21 36 1
|
| 94 |
+
40 22 37 1
|
| 95 |
+
41 24 38 1
|
| 96 |
+
42 24 39 1
|
| 97 |
+
43 25 40 1
|
| 98 |
+
44 25 41 1
|
| 99 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 100 |
+
1 FR0 1
|
| 101 |
+
|
1ndv/1ndv_ligand.sdf
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1ndv_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
39 42 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
45.8910 47.9120 17.0220 N 0 0 0 0 0
|
| 6 |
+
45.3540 47.5620 18.2420 C 0 0 0 0 0
|
| 7 |
+
46.2410 48.0930 19.2240 C 0 0 0 0 0
|
| 8 |
+
47.2490 48.7360 18.5330 N 0 0 0 0 0
|
| 9 |
+
47.0230 48.5890 17.2490 C 0 0 0 0 0
|
| 10 |
+
44.2280 46.8170 18.6340 C 0 0 0 0 0
|
| 11 |
+
44.0150 46.6370 20.0250 C 0 0 0 0 0
|
| 12 |
+
44.9070 47.1630 21.0030 C 0 0 0 0 0
|
| 13 |
+
46.0220 47.8960 20.6040 C 0 0 0 0 0
|
| 14 |
+
48.0120 48.9800 16.2160 N 0 0 0 0 0
|
| 15 |
+
49.2730 49.6300 16.5560 C 0 0 0 0 0
|
| 16 |
+
48.9460 50.9970 17.0030 C 0 0 0 0 0
|
| 17 |
+
49.6110 51.8090 18.3630 S 0 0 0 0 0
|
| 18 |
+
48.7250 53.3350 17.9660 C 0 0 0 0 0
|
| 19 |
+
47.8580 53.1270 16.8110 C 0 0 0 0 0
|
| 20 |
+
47.9940 51.7910 16.2720 C 0 0 0 0 0
|
| 21 |
+
48.6830 54.5530 18.5670 C 0 0 0 0 0
|
| 22 |
+
49.7550 54.4920 19.6080 N 0 0 0 0 0
|
| 23 |
+
50.1180 55.5990 20.3060 C 0 0 0 0 0
|
| 24 |
+
48.9360 56.8070 19.8700 S 0 0 0 0 0
|
| 25 |
+
48.1940 55.7730 18.7610 C 0 0 0 0 0
|
| 26 |
+
50.9400 55.7150 21.3940 N 0 0 0 0 0
|
| 27 |
+
51.1020 54.7290 22.3200 C 0 0 0 0 0
|
| 28 |
+
51.1160 53.4800 21.9470 N 0 0 0 0 0
|
| 29 |
+
51.2040 54.9610 23.6260 N 0 0 0 0 0
|
| 30 |
+
43.5449 46.3939 17.8975 H 0 0 0 0 0
|
| 31 |
+
43.1400 46.0778 20.3562 H 0 0 0 0 0
|
| 32 |
+
44.7172 46.9920 22.0626 H 0 0 0 0 0
|
| 33 |
+
46.7104 48.3085 21.3416 H 0 0 0 0 0
|
| 34 |
+
47.8040 48.7884 15.2360 H 0 0 0 0 0
|
| 35 |
+
49.9391 49.6550 15.6936 H 0 0 0 0 0
|
| 36 |
+
49.7907 49.0804 17.3421 H 0 0 0 0 0
|
| 37 |
+
47.1894 53.8855 16.4038 H 0 0 0 0 0
|
| 38 |
+
47.4374 51.4266 15.4085 H 0 0 0 0 0
|
| 39 |
+
47.3167 56.1051 18.2059 H 0 0 0 0 0
|
| 40 |
+
51.4582 56.5848 21.5180 H 0 0 0 0 0
|
| 41 |
+
51.0056 53.2407 20.9616 H 0 0 0 0 0
|
| 42 |
+
51.2876 54.1807 24.2776 H 0 0 0 0 0
|
| 43 |
+
51.1986 55.9192 23.9757 H 0 0 0 0 0
|
| 44 |
+
1 2 4 0 0 0
|
| 45 |
+
1 5 4 0 0 0
|
| 46 |
+
2 3 4 0 0 0
|
| 47 |
+
2 6 4 0 0 0
|
| 48 |
+
3 4 4 0 0 0
|
| 49 |
+
3 9 4 0 0 0
|
| 50 |
+
4 5 4 0 0 0
|
| 51 |
+
5 10 1 0 0 0
|
| 52 |
+
6 7 4 0 0 0
|
| 53 |
+
7 8 4 0 0 0
|
| 54 |
+
8 9 4 0 0 0
|
| 55 |
+
10 11 1 0 0 0
|
| 56 |
+
11 12 1 0 0 0
|
| 57 |
+
12 13 4 0 0 0
|
| 58 |
+
12 16 4 0 0 0
|
| 59 |
+
13 14 4 0 0 0
|
| 60 |
+
14 15 4 0 0 0
|
| 61 |
+
14 17 1 0 0 0
|
| 62 |
+
15 16 4 0 0 0
|
| 63 |
+
17 18 4 0 0 0
|
| 64 |
+
17 21 4 0 0 0
|
| 65 |
+
18 19 4 0 0 0
|
| 66 |
+
19 20 4 0 0 0
|
| 67 |
+
19 22 1 0 0 0
|
| 68 |
+
20 21 4 0 0 0
|
| 69 |
+
22 23 1 0 0 0
|
| 70 |
+
23 24 2 0 0 0
|
| 71 |
+
23 25 1 0 0 0
|
| 72 |
+
6 26 1 0 0 0
|
| 73 |
+
7 27 1 0 0 0
|
| 74 |
+
8 28 1 0 0 0
|
| 75 |
+
9 29 1 0 0 0
|
| 76 |
+
10 30 1 0 0 0
|
| 77 |
+
11 31 1 0 0 0
|
| 78 |
+
11 32 1 0 0 0
|
| 79 |
+
15 33 1 0 0 0
|
| 80 |
+
16 34 1 0 0 0
|
| 81 |
+
21 35 1 0 0 0
|
| 82 |
+
22 36 1 0 0 0
|
| 83 |
+
24 37 1 0 0 0
|
| 84 |
+
25 38 1 0 0 0
|
| 85 |
+
25 39 1 0 0 0
|
| 86 |
+
M END
|
| 87 |
+
$$$$
|
1ndv/1ndv_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ndv/1ndv_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ngw/1ngw_ligand.mol2
ADDED
|
@@ -0,0 +1,188 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Sun Sep 9 21:50:04 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1ngw_ligand
|
| 7 |
+
84 88 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 114.0570 87.1620 59.2440 N.pl3 1 NON -0.3016
|
| 14 |
+
2 C11 114.5750 85.8730 59.1770 C.2 1 NON 0.0257
|
| 15 |
+
3 C12 114.9390 85.5560 57.7920 C.2 1 NON -0.0785
|
| 16 |
+
4 C13 114.6190 86.6980 57.0170 C.2 1 NON -0.0759
|
| 17 |
+
5 C14 114.0760 87.6800 57.9600 C.2 1 NON 0.0260
|
| 18 |
+
6 C15 113.6140 88.9960 57.6350 C.3 1 NON 0.0291
|
| 19 |
+
7 C16 115.5420 84.2100 57.3110 C.3 1 NON -0.0591
|
| 20 |
+
8 C17 114.7830 86.9260 55.4550 C.3 1 NON -0.0497
|
| 21 |
+
9 C18 116.0470 86.2640 54.8600 C.3 1 NON -0.0630
|
| 22 |
+
10 N2 111.6460 89.1150 59.1450 N.pl3 1 NON -0.3016
|
| 23 |
+
11 C21 112.3420 89.5380 58.0140 C.2 1 NON 0.0257
|
| 24 |
+
12 C22 111.4250 90.3010 57.1470 C.2 1 NON -0.0785
|
| 25 |
+
13 C23 110.1830 90.3240 57.7740 C.2 1 NON -0.0759
|
| 26 |
+
14 C24 110.3340 89.5780 59.0210 C.2 1 NON 0.0260
|
| 27 |
+
15 C25 109.3100 89.3320 60.0000 C.3 1 NON 0.0291
|
| 28 |
+
16 C26 111.7640 90.9460 55.8050 C.3 1 NON -0.0591
|
| 29 |
+
17 C27 108.8820 91.0090 57.2390 C.3 1 NON -0.0497
|
| 30 |
+
18 C28 108.7370 92.4010 57.8570 C.3 1 NON -0.0630
|
| 31 |
+
19 N3 110.7670 88.0310 61.4710 N.pl3 1 NON -0.3016
|
| 32 |
+
20 C31 109.5320 88.5820 61.1890 C.2 1 NON 0.0257
|
| 33 |
+
21 C32 108.7540 88.6710 62.4360 C.2 1 NON -0.0784
|
| 34 |
+
22 C33 109.5600 88.1630 63.4630 C.2 1 NON -0.0740
|
| 35 |
+
23 C34 110.8240 87.7660 62.8180 C.2 1 NON 0.0261
|
| 36 |
+
24 C35 112.0330 87.4330 63.4590 C.3 1 NON 0.0291
|
| 37 |
+
25 C36 107.3050 89.2260 62.5910 C.3 1 NON -0.0591
|
| 38 |
+
26 C37 109.1800 88.0370 65.0080 C.3 1 NON -0.0352
|
| 39 |
+
27 C38 109.4120 89.3490 65.8540 C.3 1 NON 0.0023
|
| 40 |
+
28 C39 109.4020 89.0870 67.3840 C.2 1 NON 0.0357
|
| 41 |
+
29 O31 108.5930 88.1090 67.9230 O.co2 1 NON -0.5689
|
| 42 |
+
30 O32 110.2010 89.8370 68.2180 O.co2 1 NON -0.5689
|
| 43 |
+
31 N4 113.7150 86.5700 61.9020 N.pl3 1 NON -0.3016
|
| 44 |
+
32 C41 112.8280 86.3940 62.9470 C.2 1 NON 0.0261
|
| 45 |
+
33 C42 112.8400 85.0020 63.4050 C.2 1 NON -0.0740
|
| 46 |
+
34 C43 113.7730 84.3460 62.5870 C.2 1 NON -0.0784
|
| 47 |
+
35 C44 114.3070 85.3440 61.6410 C.2 1 NON 0.0257
|
| 48 |
+
36 C45 114.7130 85.0050 60.3170 C.3 1 NON 0.0291
|
| 49 |
+
37 C46 114.1610 82.8350 62.6570 C.3 1 NON -0.0591
|
| 50 |
+
38 C47 111.9670 84.3580 64.5860 C.3 1 NON -0.0352
|
| 51 |
+
39 C48 112.3640 84.7580 66.0710 C.3 1 NON 0.0023
|
| 52 |
+
40 C49 111.4630 84.0970 67.1680 C.2 1 NON 0.0357
|
| 53 |
+
41 O41 110.6400 83.0320 66.8550 O.co2 1 NON -0.5689
|
| 54 |
+
42 O42 111.4770 84.5750 68.4650 O.co2 1 NON -0.5689
|
| 55 |
+
43 H1 113.7216 87.6421 60.0913 H 1 NON 0.2215
|
| 56 |
+
44 H2 113.6418 89.0537 56.5369 H 1 NON 0.0524
|
| 57 |
+
45 H3 114.3627 89.6823 58.0574 H 1 NON 0.0524
|
| 58 |
+
46 H4 115.6658 83.5355 58.1711 H 1 NON 0.0284
|
| 59 |
+
47 H5 116.5212 84.3928 56.8445 H 1 NON 0.0284
|
| 60 |
+
48 H6 114.8665 83.7472 56.5765 H 1 NON 0.0284
|
| 61 |
+
49 H7 114.8359 88.0083 55.2656 H 1 NON 0.0317
|
| 62 |
+
50 H8 113.9007 86.5078 54.9484 H 1 NON 0.0317
|
| 63 |
+
51 H9 116.0918 86.4646 53.7794 H 1 NON 0.0241
|
| 64 |
+
52 H10 116.0067 85.1780 55.0300 H 1 NON 0.0241
|
| 65 |
+
53 H11 116.9419 86.6785 55.3472 H 1 NON 0.0241
|
| 66 |
+
54 H12 112.0280 88.5637 59.9267 H 1 NON 0.2215
|
| 67 |
+
55 H13 108.4984 88.8169 59.4652 H 1 NON 0.0524
|
| 68 |
+
56 H14 108.9620 90.3225 60.3284 H 1 NON 0.0524
|
| 69 |
+
57 H15 112.8220 90.7619 55.5666 H 1 NON 0.0284
|
| 70 |
+
58 H16 111.5845 92.0297 55.8632 H 1 NON 0.0284
|
| 71 |
+
59 H17 111.1299 90.5110 55.0185 H 1 NON 0.0284
|
| 72 |
+
60 H18 108.0092 90.3967 57.5097 H 1 NON 0.0317
|
| 73 |
+
61 H19 108.9409 91.0999 56.1444 H 1 NON 0.0317
|
| 74 |
+
62 H20 107.8210 92.8772 57.4772 H 1 NON 0.0241
|
| 75 |
+
63 H21 109.6087 93.0150 57.5864 H 1 NON 0.0241
|
| 76 |
+
64 H22 108.6770 92.3118 58.9517 H 1 NON 0.0241
|
| 77 |
+
65 H23 111.5167 87.8498 60.7884 H 1 NON 0.2215
|
| 78 |
+
66 H24 111.7809 87.1613 64.4947 H 1 NON 0.0524
|
| 79 |
+
67 H25 112.6548 88.3404 63.4589 H 1 NON 0.0524
|
| 80 |
+
68 H26 106.9304 89.5523 61.6096 H 1 NON 0.0284
|
| 81 |
+
69 H27 107.3118 90.0806 63.2835 H 1 NON 0.0284
|
| 82 |
+
70 H28 106.6506 88.4366 62.9892 H 1 NON 0.0284
|
| 83 |
+
71 H29 109.7908 87.2342 65.4466 H 1 NON 0.0337
|
| 84 |
+
72 H30 108.1157 87.7680 65.0781 H 1 NON 0.0337
|
| 85 |
+
73 H31 108.6138 90.0671 65.6151 H 1 NON 0.0441
|
| 86 |
+
74 H32 110.3863 89.7782 65.5772 H 1 NON 0.0441
|
| 87 |
+
75 H33 113.9025 87.4532 61.4063 H 1 NON 0.2215
|
| 88 |
+
76 H34 115.7865 84.7750 60.3861 H 1 NON 0.0524
|
| 89 |
+
77 H35 114.1577 84.0904 60.0619 H 1 NON 0.0524
|
| 90 |
+
78 H36 113.5957 82.3484 63.4655 H 1 NON 0.0284
|
| 91 |
+
79 H37 115.2389 82.7420 62.8559 H 1 NON 0.0284
|
| 92 |
+
80 H38 113.9217 82.3502 61.6990 H 1 NON 0.0284
|
| 93 |
+
81 H39 112.0500 83.2643 64.5027 H 1 NON 0.0337
|
| 94 |
+
82 H40 110.9209 84.6594 64.4288 H 1 NON 0.0337
|
| 95 |
+
83 H41 112.2835 85.8507 66.1688 H 1 NON 0.0441
|
| 96 |
+
84 H42 113.4053 84.4499 66.2462 H 1 NON 0.0441
|
| 97 |
+
@<TRIPOS>BOND
|
| 98 |
+
1 1 2 1
|
| 99 |
+
2 1 5 1
|
| 100 |
+
3 2 3 2
|
| 101 |
+
4 2 36 1
|
| 102 |
+
5 3 4 1
|
| 103 |
+
6 3 7 1
|
| 104 |
+
7 4 5 2
|
| 105 |
+
8 4 8 1
|
| 106 |
+
9 5 6 1
|
| 107 |
+
10 6 11 1
|
| 108 |
+
11 8 9 1
|
| 109 |
+
12 11 10 1
|
| 110 |
+
13 10 14 1
|
| 111 |
+
14 11 12 2
|
| 112 |
+
15 12 13 1
|
| 113 |
+
16 12 16 1
|
| 114 |
+
17 13 14 2
|
| 115 |
+
18 13 17 1
|
| 116 |
+
19 14 15 1
|
| 117 |
+
20 15 20 1
|
| 118 |
+
21 17 18 1
|
| 119 |
+
22 20 19 1
|
| 120 |
+
23 19 23 1
|
| 121 |
+
24 20 21 2
|
| 122 |
+
25 21 22 1
|
| 123 |
+
26 21 25 1
|
| 124 |
+
27 22 23 2
|
| 125 |
+
28 22 26 1
|
| 126 |
+
29 23 24 1
|
| 127 |
+
30 24 32 1
|
| 128 |
+
31 26 27 1
|
| 129 |
+
32 27 28 1
|
| 130 |
+
33 28 29 ar
|
| 131 |
+
34 28 30 ar
|
| 132 |
+
35 32 31 1
|
| 133 |
+
36 31 35 1
|
| 134 |
+
37 32 33 2
|
| 135 |
+
38 33 34 1
|
| 136 |
+
39 33 38 1
|
| 137 |
+
40 34 35 2
|
| 138 |
+
41 34 37 1
|
| 139 |
+
42 35 36 1
|
| 140 |
+
43 38 39 1
|
| 141 |
+
44 39 40 1
|
| 142 |
+
45 40 41 ar
|
| 143 |
+
46 40 42 ar
|
| 144 |
+
47 1 43 1
|
| 145 |
+
48 6 44 1
|
| 146 |
+
49 6 45 1
|
| 147 |
+
50 7 46 1
|
| 148 |
+
51 7 47 1
|
| 149 |
+
52 7 48 1
|
| 150 |
+
53 8 49 1
|
| 151 |
+
54 8 50 1
|
| 152 |
+
55 9 51 1
|
| 153 |
+
56 9 52 1
|
| 154 |
+
57 9 53 1
|
| 155 |
+
58 10 54 1
|
| 156 |
+
59 15 55 1
|
| 157 |
+
60 15 56 1
|
| 158 |
+
61 16 57 1
|
| 159 |
+
62 16 58 1
|
| 160 |
+
63 16 59 1
|
| 161 |
+
64 17 60 1
|
| 162 |
+
65 17 61 1
|
| 163 |
+
66 18 62 1
|
| 164 |
+
67 18 63 1
|
| 165 |
+
68 18 64 1
|
| 166 |
+
69 19 65 1
|
| 167 |
+
70 24 66 1
|
| 168 |
+
71 24 67 1
|
| 169 |
+
72 25 68 1
|
| 170 |
+
73 25 69 1
|
| 171 |
+
74 25 70 1
|
| 172 |
+
75 26 71 1
|
| 173 |
+
76 26 72 1
|
| 174 |
+
77 27 73 1
|
| 175 |
+
78 27 74 1
|
| 176 |
+
79 31 75 1
|
| 177 |
+
80 36 76 1
|
| 178 |
+
81 36 77 1
|
| 179 |
+
82 37 78 1
|
| 180 |
+
83 37 79 1
|
| 181 |
+
84 37 80 1
|
| 182 |
+
85 38 81 1
|
| 183 |
+
86 38 82 1
|
| 184 |
+
87 39 83 1
|
| 185 |
+
88 39 84 1
|
| 186 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 187 |
+
1 NON 1
|
| 188 |
+
|
1ngw/1ngw_ligand.sdf
ADDED
|
@@ -0,0 +1,174 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1ngw_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
82 86 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
114.0570 87.1620 59.2440 N 0 0 0 0 0
|
| 6 |
+
114.5750 85.8730 59.1770 C 0 0 0 0 0
|
| 7 |
+
114.9390 85.5560 57.7920 C 0 0 0 0 0
|
| 8 |
+
114.6190 86.6980 57.0170 C 0 0 0 0 0
|
| 9 |
+
114.0760 87.6800 57.9600 C 0 0 0 0 0
|
| 10 |
+
113.6140 88.9960 57.6350 C 0 0 0 0 0
|
| 11 |
+
115.5420 84.2100 57.3110 C 0 0 0 0 0
|
| 12 |
+
114.7830 86.9260 55.4550 C 0 0 0 0 0
|
| 13 |
+
116.0470 86.2640 54.8600 C 0 0 0 0 0
|
| 14 |
+
111.6460 89.1150 59.1450 N 0 0 0 0 0
|
| 15 |
+
112.3420 89.5380 58.0140 C 0 0 0 0 0
|
| 16 |
+
111.4250 90.3010 57.1470 C 0 0 0 0 0
|
| 17 |
+
110.1830 90.3240 57.7740 C 0 0 0 0 0
|
| 18 |
+
110.3340 89.5780 59.0210 C 0 0 0 0 0
|
| 19 |
+
109.3100 89.3320 60.0000 C 0 0 0 0 0
|
| 20 |
+
111.7640 90.9460 55.8050 C 0 0 0 0 0
|
| 21 |
+
108.8820 91.0090 57.2390 C 0 0 0 0 0
|
| 22 |
+
108.7370 92.4010 57.8570 C 0 0 0 0 0
|
| 23 |
+
110.7670 88.0310 61.4710 N 0 0 0 0 0
|
| 24 |
+
109.5320 88.5820 61.1890 C 0 0 0 0 0
|
| 25 |
+
108.7540 88.6710 62.4360 C 0 0 0 0 0
|
| 26 |
+
109.5600 88.1630 63.4630 C 0 0 0 0 0
|
| 27 |
+
110.8240 87.7660 62.8180 C 0 0 0 0 0
|
| 28 |
+
112.0330 87.4330 63.4590 C 0 0 0 0 0
|
| 29 |
+
107.3050 89.2260 62.5910 C 0 0 0 0 0
|
| 30 |
+
109.1800 88.0370 65.0080 C 0 0 0 0 0
|
| 31 |
+
109.4120 89.3490 65.8540 C 0 0 0 0 0
|
| 32 |
+
109.4020 89.0870 67.3840 C 0 0 0 0 0
|
| 33 |
+
108.5930 88.1090 67.9230 O 0 0 0 0 0
|
| 34 |
+
110.2010 89.8370 68.2180 O 0 0 0 0 0
|
| 35 |
+
113.7150 86.5700 61.9020 N 0 0 0 0 0
|
| 36 |
+
112.8280 86.3940 62.9470 C 0 0 0 0 0
|
| 37 |
+
112.8400 85.0020 63.4050 C 0 0 0 0 0
|
| 38 |
+
113.7730 84.3460 62.5870 C 0 0 0 0 0
|
| 39 |
+
114.3070 85.3440 61.6410 C 0 0 0 0 0
|
| 40 |
+
114.7130 85.0050 60.3170 C 0 0 0 0 0
|
| 41 |
+
114.1610 82.8350 62.6570 C 0 0 0 0 0
|
| 42 |
+
111.9670 84.3580 64.5860 C 0 0 0 0 0
|
| 43 |
+
112.3640 84.7580 66.0710 C 0 0 0 0 0
|
| 44 |
+
111.4630 84.0970 67.1680 C 0 0 0 0 0
|
| 45 |
+
110.6400 83.0320 66.8550 O 0 0 0 0 0
|
| 46 |
+
111.4770 84.5750 68.4650 O 0 0 0 0 0
|
| 47 |
+
113.5337 88.9524 56.5488 H 0 0 0 0 0
|
| 48 |
+
114.3097 89.6291 58.1857 H 0 0 0 0 0
|
| 49 |
+
116.4876 84.0332 57.8236 H 0 0 0 0 0
|
| 50 |
+
114.8477 83.4008 57.5373 H 0 0 0 0 0
|
| 51 |
+
115.7129 84.2537 56.2354 H 0 0 0 0 0
|
| 52 |
+
114.8688 87.9999 55.2895 H 0 0 0 0 0
|
| 53 |
+
113.9186 86.4754 54.9672 H 0 0 0 0 0
|
| 54 |
+
116.9330 86.6755 55.3436 H 0 0 0 0 0
|
| 55 |
+
116.0059 85.1880 55.0291 H 0 0 0 0 0
|
| 56 |
+
116.0902 86.4634 53.7893 H 0 0 0 0 0
|
| 57 |
+
108.5894 88.7222 59.4550 H 0 0 0 0 0
|
| 58 |
+
109.0843 90.3297 60.3765 H 0 0 0 0 0
|
| 59 |
+
112.5569 91.6805 55.9463 H 0 0 0 0 0
|
| 60 |
+
112.0988 90.1775 55.1082 H 0 0 0 0 0
|
| 61 |
+
110.8774 91.4388 55.4059 H 0 0 0 0 0
|
| 62 |
+
108.0179 90.4026 57.5104 H 0 0 0 0 0
|
| 63 |
+
108.9431 91.1009 56.1546 H 0 0 0 0 0
|
| 64 |
+
108.6777 92.3112 58.9417 H 0 0 0 0 0
|
| 65 |
+
109.6013 93.0083 57.5882 H 0 0 0 0 0
|
| 66 |
+
107.8291 92.8718 57.4799 H 0 0 0 0 0
|
| 67 |
+
111.7340 87.0887 64.4490 H 0 0 0 0 0
|
| 68 |
+
112.6509 88.3257 63.3623 H 0 0 0 0 0
|
| 69 |
+
107.2796 90.2670 62.2688 H 0 0 0 0 0
|
| 70 |
+
106.6241 88.6373 61.9762 H 0 0 0 0 0
|
| 71 |
+
107.0020 89.1602 63.6360 H 0 0 0 0 0
|
| 72 |
+
109.8261 87.2681 65.4317 H 0 0 0 0 0
|
| 73 |
+
108.1142 87.8137 65.0552 H 0 0 0 0 0
|
| 74 |
+
108.5999 90.0401 65.6281 H 0 0 0 0 0
|
| 75 |
+
110.3913 89.7480 65.5898 H 0 0 0 0 0
|
| 76 |
+
108.1018 87.6781 67.2197 H 0 0 0 0 0
|
| 77 |
+
115.7947 84.9143 60.4165 H 0 0 0 0 0
|
| 78 |
+
114.0462 84.1793 60.0685 H 0 0 0 0 0
|
| 79 |
+
114.5666 82.6107 63.6435 H 0 0 0 0 0
|
| 80 |
+
113.2751 82.2251 62.4797 H 0 0 0 0 0
|
| 81 |
+
114.9111 82.6182 61.8965 H 0 0 0 0 0
|
| 82 |
+
112.1178 83.2807 64.5160 H 0 0 0 0 0
|
| 83 |
+
110.9504 84.7230 64.4396 H 0 0 0 0 0
|
| 84 |
+
112.2433 85.8377 66.1594 H 0 0 0 0 0
|
| 85 |
+
113.3843 84.4129 66.2381 H 0 0 0 0 0
|
| 86 |
+
112.0918 85.3096 68.5275 H 0 0 0 0 0
|
| 87 |
+
1 2 4 0 0 0
|
| 88 |
+
1 5 4 0 0 0
|
| 89 |
+
2 3 4 0 0 0
|
| 90 |
+
2 36 1 0 0 0
|
| 91 |
+
3 4 4 0 0 0
|
| 92 |
+
3 7 1 0 0 0
|
| 93 |
+
4 5 4 0 0 0
|
| 94 |
+
4 8 1 0 0 0
|
| 95 |
+
5 6 1 0 0 0
|
| 96 |
+
6 11 1 0 0 0
|
| 97 |
+
8 9 1 0 0 0
|
| 98 |
+
11 10 4 0 0 0
|
| 99 |
+
10 14 4 0 0 0
|
| 100 |
+
11 12 4 0 0 0
|
| 101 |
+
12 13 4 0 0 0
|
| 102 |
+
12 16 1 0 0 0
|
| 103 |
+
13 14 4 0 0 0
|
| 104 |
+
13 17 1 0 0 0
|
| 105 |
+
14 15 1 0 0 0
|
| 106 |
+
15 20 1 0 0 0
|
| 107 |
+
17 18 1 0 0 0
|
| 108 |
+
20 19 4 0 0 0
|
| 109 |
+
19 23 4 0 0 0
|
| 110 |
+
20 21 4 0 0 0
|
| 111 |
+
21 22 4 0 0 0
|
| 112 |
+
21 25 1 0 0 0
|
| 113 |
+
22 23 4 0 0 0
|
| 114 |
+
22 26 1 0 0 0
|
| 115 |
+
23 24 1 0 0 0
|
| 116 |
+
24 32 1 0 0 0
|
| 117 |
+
26 27 1 0 0 0
|
| 118 |
+
27 28 1 0 0 0
|
| 119 |
+
28 29 1 0 0 0
|
| 120 |
+
28 30 2 0 0 0
|
| 121 |
+
32 31 4 0 0 0
|
| 122 |
+
31 35 4 0 0 0
|
| 123 |
+
32 33 4 0 0 0
|
| 124 |
+
33 34 4 0 0 0
|
| 125 |
+
33 38 1 0 0 0
|
| 126 |
+
34 35 4 0 0 0
|
| 127 |
+
34 37 1 0 0 0
|
| 128 |
+
35 36 1 0 0 0
|
| 129 |
+
38 39 1 0 0 0
|
| 130 |
+
39 40 1 0 0 0
|
| 131 |
+
40 41 2 0 0 0
|
| 132 |
+
40 42 1 0 0 0
|
| 133 |
+
6 43 1 0 0 0
|
| 134 |
+
6 44 1 0 0 0
|
| 135 |
+
7 45 1 0 0 0
|
| 136 |
+
7 46 1 0 0 0
|
| 137 |
+
7 47 1 0 0 0
|
| 138 |
+
8 48 1 0 0 0
|
| 139 |
+
8 49 1 0 0 0
|
| 140 |
+
9 50 1 0 0 0
|
| 141 |
+
9 51 1 0 0 0
|
| 142 |
+
9 52 1 0 0 0
|
| 143 |
+
15 53 1 0 0 0
|
| 144 |
+
15 54 1 0 0 0
|
| 145 |
+
16 55 1 0 0 0
|
| 146 |
+
16 56 1 0 0 0
|
| 147 |
+
16 57 1 0 0 0
|
| 148 |
+
17 58 1 0 0 0
|
| 149 |
+
17 59 1 0 0 0
|
| 150 |
+
18 60 1 0 0 0
|
| 151 |
+
18 61 1 0 0 0
|
| 152 |
+
18 62 1 0 0 0
|
| 153 |
+
24 63 1 0 0 0
|
| 154 |
+
24 64 1 0 0 0
|
| 155 |
+
25 65 1 0 0 0
|
| 156 |
+
25 66 1 0 0 0
|
| 157 |
+
25 67 1 0 0 0
|
| 158 |
+
26 68 1 0 0 0
|
| 159 |
+
26 69 1 0 0 0
|
| 160 |
+
27 70 1 0 0 0
|
| 161 |
+
27 71 1 0 0 0
|
| 162 |
+
29 72 1 0 0 0
|
| 163 |
+
36 73 1 0 0 0
|
| 164 |
+
36 74 1 0 0 0
|
| 165 |
+
37 75 1 0 0 0
|
| 166 |
+
37 76 1 0 0 0
|
| 167 |
+
37 77 1 0 0 0
|
| 168 |
+
38 78 1 0 0 0
|
| 169 |
+
38 79 1 0 0 0
|
| 170 |
+
39 80 1 0 0 0
|
| 171 |
+
39 81 1 0 0 0
|
| 172 |
+
42 82 1 0 0 0
|
| 173 |
+
M END
|
| 174 |
+
$$$$
|
1ngw/1ngw_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ngw/1ngw_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bo4/2bo4_ligand.mol2
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2bo4_ligand
|
| 7 |
+
18 17 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 CAC 87.9430 -2.3560 42.4440 C.2 1 FLC 0.0371
|
| 14 |
+
2 CA 87.3510 -2.3750 41.0680 C.3 1 FLC 0.0356
|
| 15 |
+
3 CB 85.8300 -2.1700 41.0840 C.3 1 FLC 0.1328
|
| 16 |
+
4 CBC 85.1930 -2.5880 42.4120 C.2 1 FLC 0.0796
|
| 17 |
+
5 CG 85.4550 -0.7180 40.7060 C.3 1 FLC 0.0356
|
| 18 |
+
6 CGC 84.1510 -0.6060 39.9280 C.2 1 FLC 0.0371
|
| 19 |
+
7 OA1 88.7230 -3.2740 42.7910 O.co2 1 FLC -0.5690
|
| 20 |
+
8 OA2 87.6140 -1.3980 43.1800 O.co2 1 FLC -0.5690
|
| 21 |
+
9 OB1 84.7070 -1.7710 43.2570 O.co2 1 FLC -0.5449
|
| 22 |
+
10 OB2 85.1790 -3.8180 42.6320 O.co2 1 FLC -0.5449
|
| 23 |
+
11 OG1 83.3440 0.2770 40.2400 O.co2 1 FLC -0.5690
|
| 24 |
+
12 OG2 83.9050 -1.3790 38.9820 O.co2 1 FLC -0.5690
|
| 25 |
+
13 OHB 85.3820 -3.1190 40.1090 O.3 1 FLC -0.3818
|
| 26 |
+
14 H1 87.5718 -3.3464 40.6015 H 1 FLC 0.0452
|
| 27 |
+
15 H2 87.8099 -1.5705 40.4746 H 1 FLC 0.0452
|
| 28 |
+
16 H3 86.2642 -0.2994 40.0896 H 1 FLC 0.0452
|
| 29 |
+
17 H4 85.3585 -0.1319 41.6318 H 1 FLC 0.0452
|
| 30 |
+
18 H5 85.6630 -3.9899 40.3640 H 1 FLC 0.2091
|
| 31 |
+
@<TRIPOS>BOND
|
| 32 |
+
1 1 2 1
|
| 33 |
+
2 1 7 ar
|
| 34 |
+
3 1 8 ar
|
| 35 |
+
4 2 3 1
|
| 36 |
+
5 3 4 1
|
| 37 |
+
6 3 5 1
|
| 38 |
+
7 3 13 1
|
| 39 |
+
8 4 9 ar
|
| 40 |
+
9 4 10 ar
|
| 41 |
+
10 5 6 1
|
| 42 |
+
11 6 11 ar
|
| 43 |
+
12 6 12 ar
|
| 44 |
+
13 2 14 1
|
| 45 |
+
14 2 15 1
|
| 46 |
+
15 5 16 1
|
| 47 |
+
16 5 17 1
|
| 48 |
+
17 13 18 1
|
| 49 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 50 |
+
1 FLC 1
|
| 51 |
+
|
2bo4/2bo4_ligand.sdf
ADDED
|
@@ -0,0 +1,47 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2bo4_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
21 20 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
87.9430 -2.3560 42.4440 C 0 0 0 0 0
|
| 6 |
+
87.3510 -2.3750 41.0680 C 0 0 0 0 0
|
| 7 |
+
85.8300 -2.1700 41.0840 C 0 0 0 0 0
|
| 8 |
+
85.1930 -2.5880 42.4120 C 0 0 0 0 0
|
| 9 |
+
85.4550 -0.7180 40.7060 C 0 0 0 0 0
|
| 10 |
+
84.1510 -0.6060 39.9280 C 0 0 0 0 0
|
| 11 |
+
88.7230 -3.2740 42.7910 O 0 0 0 0 0
|
| 12 |
+
87.6140 -1.3980 43.1800 O 0 0 0 0 0
|
| 13 |
+
84.7070 -1.7710 43.2570 O 0 0 0 0 0
|
| 14 |
+
85.1790 -3.8180 42.6320 O 0 0 0 0 0
|
| 15 |
+
83.3440 0.2770 40.2400 O 0 0 0 0 0
|
| 16 |
+
83.9050 -1.3790 38.9820 O 0 0 0 0 0
|
| 17 |
+
85.3820 -3.1190 40.1090 O 0 0 0 0 0
|
| 18 |
+
87.5557 -3.3500 40.6257 H 0 0 0 0 0
|
| 19 |
+
87.7957 -1.5594 40.4977 H 0 0 0 0 0
|
| 20 |
+
86.2497 -0.3315 40.0679 H 0 0 0 0 0
|
| 21 |
+
85.3295 -0.1613 41.6347 H 0 0 0 0 0
|
| 22 |
+
88.8270 -3.8950 42.0664 H 0 0 0 0 0
|
| 23 |
+
84.8027 -0.8751 42.9257 H 0 0 0 0 0
|
| 24 |
+
84.6321 -1.9972 38.8780 H 0 0 0 0 0
|
| 25 |
+
85.6359 -4.0030 40.3842 H 0 0 0 0 0
|
| 26 |
+
1 2 1 0 0 0
|
| 27 |
+
1 7 1 0 0 0
|
| 28 |
+
1 8 2 0 0 0
|
| 29 |
+
2 3 1 0 0 0
|
| 30 |
+
3 4 1 0 0 0
|
| 31 |
+
3 5 1 0 0 0
|
| 32 |
+
3 13 1 0 0 0
|
| 33 |
+
4 9 1 0 0 0
|
| 34 |
+
4 10 2 0 0 0
|
| 35 |
+
5 6 1 0 0 0
|
| 36 |
+
6 11 2 0 0 0
|
| 37 |
+
6 12 1 0 0 0
|
| 38 |
+
2 14 1 0 0 0
|
| 39 |
+
2 15 1 0 0 0
|
| 40 |
+
5 16 1 0 0 0
|
| 41 |
+
5 17 1 0 0 0
|
| 42 |
+
7 18 1 0 0 0
|
| 43 |
+
9 19 1 0 0 0
|
| 44 |
+
12 20 1 0 0 0
|
| 45 |
+
13 21 1 0 0 0
|
| 46 |
+
M END
|
| 47 |
+
$$$$
|
2bo4/2bo4_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bo4/2bo4_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2brm/2brm_ligand.mol2
ADDED
|
@@ -0,0 +1,105 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2brm_ligand
|
| 7 |
+
43 46 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C2 6.0690 -2.2850 19.4910 C.ar 1 DFZ 0.0517
|
| 14 |
+
2 C10 2.0930 -4.2810 19.7290 C.2 1 DFZ 0.0827
|
| 15 |
+
3 C11 0.7620 -4.6430 19.9740 C.ar 1 DFZ 0.0083
|
| 16 |
+
4 C12 0.2530 -5.9090 19.7010 C.ar 1 DFZ -0.0521
|
| 17 |
+
5 C13 -1.0810 -6.2130 19.9650 C.ar 1 DFZ -0.0617
|
| 18 |
+
6 C14 -1.9300 -5.2530 20.5090 C.ar 1 DFZ -0.0624
|
| 19 |
+
7 C15 -1.4340 -3.9840 20.7860 C.ar 1 DFZ -0.0617
|
| 20 |
+
8 C16 -0.0980 -3.6880 20.5170 C.ar 1 DFZ -0.0521
|
| 21 |
+
9 C19 2.1820 -6.3430 17.1790 C.ar 1 DFZ -0.0620
|
| 22 |
+
10 C20 2.0550 -7.5920 16.5670 C.ar 1 DFZ -0.0668
|
| 23 |
+
11 C21 2.6560 -8.7200 17.1260 C.ar 1 DFZ -0.0667
|
| 24 |
+
12 C22 3.3880 -8.5960 18.3040 C.ar 1 DFZ -0.0668
|
| 25 |
+
13 N1 4.8520 -2.1560 19.9810 N.ar 1 DFZ -0.2743
|
| 26 |
+
14 C6 3.9260 -3.0990 19.7700 C.ar 1 DFZ 0.1401
|
| 27 |
+
15 C5 4.2350 -4.2300 19.0210 C.ar 1 DFZ 0.0599
|
| 28 |
+
16 N9 5.9720 -5.3620 17.7820 N.pl3 1 DFZ -0.2990
|
| 29 |
+
17 C4 5.5390 -4.3340 18.5170 C.ar 1 DFZ 0.1221
|
| 30 |
+
18 N3 6.4120 -3.3440 18.7820 N.ar 1 DFZ -0.2715
|
| 31 |
+
19 N90 2.6610 -3.1610 20.1650 N.pl3 1 DFZ -0.2559
|
| 32 |
+
20 C17 3.5100 -7.3500 18.9160 C.ar 1 DFZ -0.0620
|
| 33 |
+
21 C1 3.0590 -4.9830 18.9950 C.2 1 DFZ 0.0068
|
| 34 |
+
22 C18 2.9100 -6.2190 18.3600 C.ar 1 DFZ -0.0346
|
| 35 |
+
23 C23 7.5920 -4.3990 16.1920 C.3 1 DFZ 0.0648
|
| 36 |
+
24 C8 7.3640 -5.4350 17.3020 C.3 1 DFZ 0.0533
|
| 37 |
+
25 O24 8.4060 -3.3250 16.6890 O.3 1 DFZ -0.3930
|
| 38 |
+
26 H1 6.8014 -1.5070 19.6738 H 1 DFZ 0.0987
|
| 39 |
+
27 H2 0.9018 -6.6675 19.2781 H 1 DFZ 0.0621
|
| 40 |
+
28 H3 -1.4605 -7.2043 19.7452 H 1 DFZ 0.0616
|
| 41 |
+
29 H4 -2.9671 -5.4925 20.7145 H 1 DFZ 0.0612
|
| 42 |
+
30 H5 -2.0838 -3.2269 21.2098 H 1 DFZ 0.0616
|
| 43 |
+
31 H6 0.2800 -2.6955 20.7343 H 1 DFZ 0.0621
|
| 44 |
+
32 H7 1.7146 -5.4713 16.7355 H 1 DFZ 0.0576
|
| 45 |
+
33 H8 1.4846 -7.6857 15.6499 H 1 DFZ 0.0604
|
| 46 |
+
34 H9 2.5538 -9.6868 16.6464 H 1 DFZ 0.0576
|
| 47 |
+
35 H10 3.8616 -9.4663 18.7438 H 1 DFZ 0.0604
|
| 48 |
+
36 H11 5.3179 -6.1215 17.5451 H 1 DFZ 0.1865
|
| 49 |
+
37 H12 2.1859 -2.4426 20.7299 H 1 DFZ 0.2309
|
| 50 |
+
38 H13 4.0777 -7.2580 19.8349 H 1 DFZ 0.0576
|
| 51 |
+
39 H14 6.6223 -3.9991 15.8608 H 1 DFZ 0.0578
|
| 52 |
+
40 H15 8.0999 -4.8794 15.3428 H 1 DFZ 0.0578
|
| 53 |
+
41 H16 7.5604 -6.4423 16.9060 H 1 DFZ 0.0549
|
| 54 |
+
42 H17 8.0488 -5.2297 18.1380 H 1 DFZ 0.0549
|
| 55 |
+
43 H18 7.9671 -2.9095 17.4220 H 1 DFZ 0.2095
|
| 56 |
+
@<TRIPOS>BOND
|
| 57 |
+
1 13 1 ar
|
| 58 |
+
2 18 1 ar
|
| 59 |
+
3 2 3 1
|
| 60 |
+
4 2 19 1
|
| 61 |
+
5 21 2 2
|
| 62 |
+
6 3 4 ar
|
| 63 |
+
7 3 8 ar
|
| 64 |
+
8 4 5 ar
|
| 65 |
+
9 5 6 ar
|
| 66 |
+
10 7 6 ar
|
| 67 |
+
11 8 7 ar
|
| 68 |
+
12 9 10 ar
|
| 69 |
+
13 22 9 ar
|
| 70 |
+
14 10 11 ar
|
| 71 |
+
15 12 11 ar
|
| 72 |
+
16 20 12 ar
|
| 73 |
+
17 14 13 ar
|
| 74 |
+
18 15 14 ar
|
| 75 |
+
19 14 19 1
|
| 76 |
+
20 15 17 ar
|
| 77 |
+
21 21 15 1
|
| 78 |
+
22 17 16 1
|
| 79 |
+
23 16 24 1
|
| 80 |
+
24 17 18 ar
|
| 81 |
+
25 22 20 ar
|
| 82 |
+
26 21 22 1
|
| 83 |
+
27 24 23 1
|
| 84 |
+
28 23 25 1
|
| 85 |
+
29 1 26 1
|
| 86 |
+
30 4 27 1
|
| 87 |
+
31 5 28 1
|
| 88 |
+
32 6 29 1
|
| 89 |
+
33 7 30 1
|
| 90 |
+
34 8 31 1
|
| 91 |
+
35 9 32 1
|
| 92 |
+
36 10 33 1
|
| 93 |
+
37 11 34 1
|
| 94 |
+
38 12 35 1
|
| 95 |
+
39 16 36 1
|
| 96 |
+
40 19 37 1
|
| 97 |
+
41 20 38 1
|
| 98 |
+
42 23 39 1
|
| 99 |
+
43 23 40 1
|
| 100 |
+
44 24 41 1
|
| 101 |
+
45 24 42 1
|
| 102 |
+
46 25 43 1
|
| 103 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 104 |
+
1 DFZ 1
|
| 105 |
+
|
2brm/2brm_ligand.sdf
ADDED
|
@@ -0,0 +1,93 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2brm_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
42 45 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
6.0690 -2.2850 19.4910 C 0 0 0 0 0
|
| 6 |
+
2.0930 -4.2810 19.7290 C 0 0 0 0 0
|
| 7 |
+
0.7620 -4.6430 19.9740 C 0 0 0 0 0
|
| 8 |
+
0.2530 -5.9090 19.7010 C 0 0 0 0 0
|
| 9 |
+
-1.0810 -6.2130 19.9650 C 0 0 0 0 0
|
| 10 |
+
-1.9300 -5.2530 20.5090 C 0 0 0 0 0
|
| 11 |
+
-1.4340 -3.9840 20.7860 C 0 0 0 0 0
|
| 12 |
+
-0.0980 -3.6880 20.5170 C 0 0 0 0 0
|
| 13 |
+
2.1820 -6.3430 17.1790 C 0 0 0 0 0
|
| 14 |
+
2.0550 -7.5920 16.5670 C 0 0 0 0 0
|
| 15 |
+
2.6560 -8.7200 17.1260 C 0 0 0 0 0
|
| 16 |
+
3.3880 -8.5960 18.3040 C 0 0 0 0 0
|
| 17 |
+
4.8520 -2.1560 19.9810 N 0 0 0 0 0
|
| 18 |
+
3.9260 -3.0990 19.7700 C 0 0 0 0 0
|
| 19 |
+
4.2350 -4.2300 19.0210 C 0 0 0 0 0
|
| 20 |
+
5.9720 -5.3620 17.7820 N 0 0 0 0 0
|
| 21 |
+
5.5390 -4.3340 18.5170 C 0 0 0 0 0
|
| 22 |
+
6.4120 -3.3440 18.7820 N 0 0 0 0 0
|
| 23 |
+
2.6610 -3.1610 20.1650 N 0 0 0 0 0
|
| 24 |
+
3.5100 -7.3500 18.9160 C 0 0 0 0 0
|
| 25 |
+
3.0590 -4.9830 18.9950 C 0 0 0 0 0
|
| 26 |
+
2.9100 -6.2190 18.3600 C 0 0 0 0 0
|
| 27 |
+
7.5920 -4.3990 16.1920 C 0 0 0 0 0
|
| 28 |
+
7.3640 -5.4350 17.3020 C 0 0 0 0 0
|
| 29 |
+
8.4060 -3.3250 16.6890 O 0 0 0 0 0
|
| 30 |
+
6.8055 -1.5027 19.6748 H 0 0 0 0 0
|
| 31 |
+
0.9053 -6.6717 19.2757 H 0 0 0 0 0
|
| 32 |
+
-1.4626 -7.2098 19.7440 H 0 0 0 0 0
|
| 33 |
+
-2.9728 -5.4938 20.7156 H 0 0 0 0 0
|
| 34 |
+
-2.0874 -3.2227 21.2122 H 0 0 0 0 0
|
| 35 |
+
0.2821 -2.6901 20.7355 H 0 0 0 0 0
|
| 36 |
+
1.7120 -5.4664 16.7330 H 0 0 0 0 0
|
| 37 |
+
1.4815 -7.6862 15.6449 H 0 0 0 0 0
|
| 38 |
+
2.5533 -9.6921 16.6438 H 0 0 0 0 0
|
| 39 |
+
3.8642 -9.4711 18.7462 H 0 0 0 0 0
|
| 40 |
+
5.3242 -6.1142 17.5474 H 0 0 0 0 0
|
| 41 |
+
4.0808 -7.2575 19.8400 H 0 0 0 0 0
|
| 42 |
+
6.6305 -4.0018 15.8666 H 0 0 0 0 0
|
| 43 |
+
8.0976 -4.8757 15.3523 H 0 0 0 0 0
|
| 44 |
+
7.5549 -6.4325 16.9061 H 0 0 0 0 0
|
| 45 |
+
8.0405 -5.2270 18.1310 H 0 0 0 0 0
|
| 46 |
+
8.5450 -2.6808 15.9909 H 0 0 0 0 0
|
| 47 |
+
13 1 4 0 0 0
|
| 48 |
+
18 1 4 0 0 0
|
| 49 |
+
2 3 1 0 0 0
|
| 50 |
+
2 19 4 0 0 0
|
| 51 |
+
21 2 4 0 0 0
|
| 52 |
+
3 4 4 0 0 0
|
| 53 |
+
3 8 4 0 0 0
|
| 54 |
+
4 5 4 0 0 0
|
| 55 |
+
5 6 4 0 0 0
|
| 56 |
+
7 6 4 0 0 0
|
| 57 |
+
8 7 4 0 0 0
|
| 58 |
+
9 10 4 0 0 0
|
| 59 |
+
22 9 4 0 0 0
|
| 60 |
+
10 11 4 0 0 0
|
| 61 |
+
12 11 4 0 0 0
|
| 62 |
+
20 12 4 0 0 0
|
| 63 |
+
14 13 4 0 0 0
|
| 64 |
+
15 14 4 0 0 0
|
| 65 |
+
14 19 4 0 0 0
|
| 66 |
+
15 17 4 0 0 0
|
| 67 |
+
21 15 4 0 0 0
|
| 68 |
+
17 16 1 0 0 0
|
| 69 |
+
16 24 1 0 0 0
|
| 70 |
+
17 18 4 0 0 0
|
| 71 |
+
22 20 4 0 0 0
|
| 72 |
+
21 22 1 0 0 0
|
| 73 |
+
24 23 1 0 0 0
|
| 74 |
+
23 25 1 0 0 0
|
| 75 |
+
1 26 1 0 0 0
|
| 76 |
+
4 27 1 0 0 0
|
| 77 |
+
5 28 1 0 0 0
|
| 78 |
+
6 29 1 0 0 0
|
| 79 |
+
7 30 1 0 0 0
|
| 80 |
+
8 31 1 0 0 0
|
| 81 |
+
9 32 1 0 0 0
|
| 82 |
+
10 33 1 0 0 0
|
| 83 |
+
11 34 1 0 0 0
|
| 84 |
+
12 35 1 0 0 0
|
| 85 |
+
16 36 1 0 0 0
|
| 86 |
+
20 37 1 0 0 0
|
| 87 |
+
23 38 1 0 0 0
|
| 88 |
+
23 39 1 0 0 0
|
| 89 |
+
24 40 1 0 0 0
|
| 90 |
+
24 41 1 0 0 0
|
| 91 |
+
25 42 1 0 0 0
|
| 92 |
+
M END
|
| 93 |
+
$$$$
|
2brm/2brm_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2brm/2brm_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2byh/2byh_ligand.mol2
ADDED
|
@@ -0,0 +1,98 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2byh_ligand
|
| 7 |
+
40 42 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O6 5.6560 -2.4880 5.5440 O.2 1 2D7 -0.3868
|
| 14 |
+
2 C17 4.7820 -2.4710 6.3870 C.2 1 2D7 0.1182
|
| 15 |
+
3 C18 3.9620 -3.6990 6.6910 C.3 1 2D7 0.0082
|
| 16 |
+
4 C14 4.5170 -1.2360 7.1850 C.ar 1 2D7 0.0162
|
| 17 |
+
5 C15 3.5280 -1.2370 8.1690 C.ar 1 2D7 -0.0565
|
| 18 |
+
6 C16 3.2570 -0.0870 8.9010 C.ar 1 2D7 -0.0348
|
| 19 |
+
7 C13 5.2270 -0.0490 6.9600 C.ar 1 2D7 -0.0565
|
| 20 |
+
8 C12 4.9460 1.0980 7.6980 C.ar 1 2D7 -0.0348
|
| 21 |
+
9 C11 3.9150 1.1240 8.6270 C.ar 1 2D7 0.0712
|
| 22 |
+
10 N3 3.7560 2.2280 9.3850 N.am 1 2D7 -0.2351
|
| 23 |
+
11 C10 2.8530 2.5610 10.3120 C.2 1 2D7 0.2102
|
| 24 |
+
12 O5 1.8700 1.8370 10.5490 O.2 1 2D7 -0.3897
|
| 25 |
+
13 C8 3.0700 3.7810 11.1680 C.2 1 2D7 0.0706
|
| 26 |
+
14 C9 2.1150 4.6050 11.7260 C.2 1 2D7 0.0104
|
| 27 |
+
15 N1 2.7820 5.4630 12.5070 N.2 1 2D7 -0.2205
|
| 28 |
+
16 N2 4.0790 5.2510 12.5160 N.pl3 1 2D7 -0.2144
|
| 29 |
+
17 C7 4.3160 4.1910 11.7700 C.2 1 2D7 0.1019
|
| 30 |
+
18 C5 5.7090 3.6640 11.5610 C.ar 1 2D7 0.0394
|
| 31 |
+
19 C6 5.9130 2.3050 11.3540 C.ar 1 2D7 -0.0486
|
| 32 |
+
20 C1 7.1660 1.8100 11.1080 C.ar 1 2D7 0.0609
|
| 33 |
+
21 CL1 7.4110 0.0810 10.8860 Cl 1 2D7 -0.0867
|
| 34 |
+
22 C2 8.2720 2.6270 11.0890 C.ar 1 2D7 0.0981
|
| 35 |
+
23 O2 9.4540 2.0890 10.8230 O.3 1 2D7 -0.3320
|
| 36 |
+
24 C3 8.1150 3.9700 11.3270 C.ar 1 2D7 0.0007
|
| 37 |
+
25 C4 6.8420 4.5040 11.5730 C.ar 1 2D7 0.0979
|
| 38 |
+
26 O4 6.7700 5.8180 11.8090 O.3 1 2D7 -0.3302
|
| 39 |
+
27 H1 3.2322 -3.4663 7.4804 H 1 2D7 0.0446
|
| 40 |
+
28 H2 4.6252 -4.5077 7.0316 H 1 2D7 0.0446
|
| 41 |
+
29 H3 3.4302 -4.0189 5.7828 H 1 2D7 0.0446
|
| 42 |
+
30 H4 2.9658 -2.1430 8.3644 H 1 2D7 0.0632
|
| 43 |
+
31 H5 2.5239 -0.1250 9.6986 H 1 2D7 0.0518
|
| 44 |
+
32 H6 6.0030 -0.0234 6.2036 H 1 2D7 0.0632
|
| 45 |
+
33 H7 5.5445 1.9885 7.5439 H 1 2D7 0.0518
|
| 46 |
+
34 H8 4.4465 2.9328 9.2221 H 1 2D7 0.2268
|
| 47 |
+
35 H9 1.0388 4.5655 11.5642 H 1 2D7 0.0687
|
| 48 |
+
36 H10 4.7832 5.8122 13.0160 H 1 2D7 0.2547
|
| 49 |
+
37 H11 5.0680 1.6269 11.3877 H 1 2D7 0.0598
|
| 50 |
+
38 H12 10.1205 2.7656 10.8436 H 1 2D7 0.2502
|
| 51 |
+
39 H13 8.9810 4.6220 11.3247 H 1 2D7 0.0473
|
| 52 |
+
40 H14 7.2889 6.0297 12.5761 H 1 2D7 0.2511
|
| 53 |
+
@<TRIPOS>BOND
|
| 54 |
+
1 1 2 2
|
| 55 |
+
2 2 3 1
|
| 56 |
+
3 2 4 1
|
| 57 |
+
4 4 5 ar
|
| 58 |
+
5 4 7 ar
|
| 59 |
+
6 5 6 ar
|
| 60 |
+
7 6 9 ar
|
| 61 |
+
8 7 8 ar
|
| 62 |
+
9 8 9 ar
|
| 63 |
+
10 9 10 1
|
| 64 |
+
11 10 11 am
|
| 65 |
+
12 11 12 2
|
| 66 |
+
13 11 13 1
|
| 67 |
+
14 13 14 1
|
| 68 |
+
15 13 17 2
|
| 69 |
+
16 14 15 2
|
| 70 |
+
17 15 16 1
|
| 71 |
+
18 16 17 1
|
| 72 |
+
19 17 18 1
|
| 73 |
+
20 18 19 ar
|
| 74 |
+
21 18 25 ar
|
| 75 |
+
22 19 20 ar
|
| 76 |
+
23 20 21 1
|
| 77 |
+
24 20 22 ar
|
| 78 |
+
25 22 23 1
|
| 79 |
+
26 22 24 ar
|
| 80 |
+
27 24 25 ar
|
| 81 |
+
28 25 26 1
|
| 82 |
+
29 3 27 1
|
| 83 |
+
30 3 28 1
|
| 84 |
+
31 3 29 1
|
| 85 |
+
32 5 30 1
|
| 86 |
+
33 6 31 1
|
| 87 |
+
34 7 32 1
|
| 88 |
+
35 8 33 1
|
| 89 |
+
36 10 34 1
|
| 90 |
+
37 14 35 1
|
| 91 |
+
38 16 36 1
|
| 92 |
+
39 19 37 1
|
| 93 |
+
40 23 38 1
|
| 94 |
+
41 24 39 1
|
| 95 |
+
42 26 40 1
|
| 96 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 97 |
+
1 2D7 1
|
| 98 |
+
|
2byh/2byh_ligand.sdf
ADDED
|
@@ -0,0 +1,86 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2byh_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
39 41 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
5.6560 -2.4880 5.5440 O 0 0 0 0 0
|
| 6 |
+
4.7820 -2.4710 6.3870 C 0 0 0 0 0
|
| 7 |
+
3.9620 -3.6990 6.6910 C 0 0 0 0 0
|
| 8 |
+
4.5170 -1.2360 7.1850 C 0 0 0 0 0
|
| 9 |
+
3.5280 -1.2370 8.1690 C 0 0 0 0 0
|
| 10 |
+
3.2570 -0.0870 8.9010 C 0 0 0 0 0
|
| 11 |
+
5.2270 -0.0490 6.9600 C 0 0 0 0 0
|
| 12 |
+
4.9460 1.0980 7.6980 C 0 0 0 0 0
|
| 13 |
+
3.9150 1.1240 8.6270 C 0 0 0 0 0
|
| 14 |
+
3.7560 2.2280 9.3850 N 0 0 0 0 0
|
| 15 |
+
2.8530 2.5610 10.3120 C 0 0 0 0 0
|
| 16 |
+
1.8700 1.8370 10.5490 O 0 0 0 0 0
|
| 17 |
+
3.0700 3.7810 11.1680 C 0 0 0 0 0
|
| 18 |
+
2.1150 4.6050 11.7260 C 0 0 0 0 0
|
| 19 |
+
2.7820 5.4630 12.5070 N 0 0 0 0 0
|
| 20 |
+
4.0790 5.2510 12.5160 N 0 0 0 0 0
|
| 21 |
+
4.3160 4.1910 11.7700 C 0 0 0 0 0
|
| 22 |
+
5.7090 3.6640 11.5610 C 0 0 0 0 0
|
| 23 |
+
5.9130 2.3050 11.3540 C 0 0 0 0 0
|
| 24 |
+
7.1660 1.8100 11.1080 C 0 0 0 0 0
|
| 25 |
+
7.4110 0.0810 10.8860 Cl 0 0 0 0 0
|
| 26 |
+
8.2720 2.6270 11.0890 C 0 0 0 0 0
|
| 27 |
+
9.4540 2.0890 10.8230 O 0 0 0 0 0
|
| 28 |
+
8.1150 3.9700 11.3270 C 0 0 0 0 0
|
| 29 |
+
6.8420 4.5040 11.5730 C 0 0 0 0 0
|
| 30 |
+
6.7700 5.8180 11.8090 O 0 0 0 0 0
|
| 31 |
+
3.4356 -4.0150 5.7903 H 0 0 0 0 0
|
| 32 |
+
4.6203 -4.4996 7.0284 H 0 0 0 0 0
|
| 33 |
+
3.2393 -3.4672 7.4733 H 0 0 0 0 0
|
| 34 |
+
2.9627 -2.1480 8.3655 H 0 0 0 0 0
|
| 35 |
+
2.5199 -0.1252 9.7030 H 0 0 0 0 0
|
| 36 |
+
6.0073 -0.0232 6.1994 H 0 0 0 0 0
|
| 37 |
+
5.5478 1.9935 7.5430 H 0 0 0 0 0
|
| 38 |
+
4.4603 2.9469 9.2188 H 0 0 0 0 0
|
| 39 |
+
1.0378 4.5655 11.5641 H 0 0 0 0 0
|
| 40 |
+
5.0633 1.6231 11.3879 H 0 0 0 0 0
|
| 41 |
+
10.1275 2.7728 10.8439 H 0 0 0 0 0
|
| 42 |
+
8.9858 4.6256 11.3247 H 0 0 0 0 0
|
| 43 |
+
7.6510 6.1976 11.7710 H 0 0 0 0 0
|
| 44 |
+
1 2 2 0 0 0
|
| 45 |
+
2 3 1 0 0 0
|
| 46 |
+
2 4 1 0 0 0
|
| 47 |
+
4 5 4 0 0 0
|
| 48 |
+
4 7 4 0 0 0
|
| 49 |
+
5 6 4 0 0 0
|
| 50 |
+
6 9 4 0 0 0
|
| 51 |
+
7 8 4 0 0 0
|
| 52 |
+
8 9 4 0 0 0
|
| 53 |
+
9 10 1 0 0 0
|
| 54 |
+
10 11 1 0 0 0
|
| 55 |
+
11 12 2 0 0 0
|
| 56 |
+
11 13 1 0 0 0
|
| 57 |
+
13 14 4 0 0 0
|
| 58 |
+
13 17 4 0 0 0
|
| 59 |
+
14 15 4 0 0 0
|
| 60 |
+
15 16 4 0 0 0
|
| 61 |
+
16 17 4 0 0 0
|
| 62 |
+
17 18 1 0 0 0
|
| 63 |
+
18 19 4 0 0 0
|
| 64 |
+
18 25 4 0 0 0
|
| 65 |
+
19 20 4 0 0 0
|
| 66 |
+
20 21 1 0 0 0
|
| 67 |
+
20 22 4 0 0 0
|
| 68 |
+
22 23 1 0 0 0
|
| 69 |
+
22 24 4 0 0 0
|
| 70 |
+
24 25 4 0 0 0
|
| 71 |
+
25 26 1 0 0 0
|
| 72 |
+
3 27 1 0 0 0
|
| 73 |
+
3 28 1 0 0 0
|
| 74 |
+
3 29 1 0 0 0
|
| 75 |
+
5 30 1 0 0 0
|
| 76 |
+
6 31 1 0 0 0
|
| 77 |
+
7 32 1 0 0 0
|
| 78 |
+
8 33 1 0 0 0
|
| 79 |
+
10 34 1 0 0 0
|
| 80 |
+
14 35 1 0 0 0
|
| 81 |
+
19 36 1 0 0 0
|
| 82 |
+
23 37 1 0 0 0
|
| 83 |
+
24 38 1 0 0 0
|
| 84 |
+
26 39 1 0 0 0
|
| 85 |
+
M END
|
| 86 |
+
$$$$
|
2byh/2byh_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2byh/2byh_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2hh5/2hh5_ligand.mol2
ADDED
|
@@ -0,0 +1,158 @@
|
|
|
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|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2hh5_ligand
|
| 7 |
+
70 72 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O5 14.6730 -1.1680 -4.4990 O.2 1 GNQ -0.1721
|
| 14 |
+
2 S 14.4340 -2.2650 -5.3770 S.o2 1 GNQ -0.0172
|
| 15 |
+
3 O4 13.3910 -2.1160 -6.3140 O.2 1 GNQ -0.1721
|
| 16 |
+
4 C17 14.2960 -3.7040 -4.5030 C.3 1 GNQ 0.0995
|
| 17 |
+
5 C18 13.1660 -3.6720 -3.5070 C.ar 1 GNQ -0.0221
|
| 18 |
+
6 C20 11.9170 -4.2050 -3.8220 C.ar 1 GNQ -0.0588
|
| 19 |
+
7 C21 10.8990 -4.1590 -2.8810 C.ar 1 GNQ -0.0685
|
| 20 |
+
8 C22 11.1390 -3.5950 -1.6420 C.ar 1 GNQ -0.0687
|
| 21 |
+
9 C23 12.3780 -3.0770 -1.3200 C.ar 1 GNQ -0.0685
|
| 22 |
+
10 C19 13.4000 -3.1050 -2.2650 C.ar 1 GNQ -0.0588
|
| 23 |
+
11 C16 15.8400 -2.4890 -6.3140 C.3 1 GNQ 0.1077
|
| 24 |
+
12 CA 15.6420 -3.2530 -7.6340 C.3 1 GNQ 0.1505
|
| 25 |
+
13 N 15.5470 -4.6770 -7.3600 N.am 1 GNQ -0.2501
|
| 26 |
+
14 C11 15.2180 -5.4600 -8.3910 C.2 1 GNQ 0.2623
|
| 27 |
+
15 O3 14.9720 -4.9440 -9.4720 O.2 1 GNQ -0.4005
|
| 28 |
+
16 N3 15.1590 -6.7850 -8.3010 N.am 1 GNQ -0.2550
|
| 29 |
+
17 C15 14.7600 -7.5830 -9.4650 C.3 1 GNQ 0.0577
|
| 30 |
+
18 C14 15.6370 -8.8070 -9.5840 C.3 1 GNQ 0.0678
|
| 31 |
+
19 O2 15.4990 -9.5630 -8.3880 O.3 1 GNQ -0.3758
|
| 32 |
+
20 C13 16.0570 -8.8220 -7.2860 C.3 1 GNQ 0.0678
|
| 33 |
+
21 C12 15.3570 -7.5040 -7.0510 C.3 1 GNQ 0.0577
|
| 34 |
+
22 C 16.8260 -3.0280 -8.5700 C.2 1 GNQ 0.2033
|
| 35 |
+
23 O 17.9360 -3.4500 -8.2840 O.2 1 GNQ -0.3945
|
| 36 |
+
24 N2 16.5950 -2.3290 -9.7040 N.am 1 GNQ -0.2804
|
| 37 |
+
25 C9 17.6370 -2.0440 -10.6530 C.3 1 GNQ 0.0582
|
| 38 |
+
26 C10 17.9450 -3.2960 -11.4550 C.3 1 GNQ -0.0402
|
| 39 |
+
27 C8 17.2050 -0.9100 -11.5950 C.3 1 GNQ 0.0444
|
| 40 |
+
28 N1 16.5480 0.2570 -10.9340 N.pl3 1 GNQ -0.3265
|
| 41 |
+
29 C7 16.0730 1.1760 -11.8060 C.ar 1 GNQ 0.0269
|
| 42 |
+
30 C6 14.7270 1.5080 -11.8150 C.ar 1 GNQ -0.0526
|
| 43 |
+
31 C5 14.2200 2.4400 -12.7070 C.ar 1 GNQ -0.0440
|
| 44 |
+
32 C4 16.9100 1.7530 -12.7660 C.ar 1 GNQ -0.0526
|
| 45 |
+
33 C3 16.3960 2.6880 -13.6650 C.ar 1 GNQ -0.0440
|
| 46 |
+
34 C2 15.0300 3.0280 -13.6450 C.ar 1 GNQ 0.0869
|
| 47 |
+
35 O1 14.4170 3.8990 -14.5290 O.3 1 GNQ -0.2348
|
| 48 |
+
36 C1 15.0880 4.9340 -15.2010 C.3 1 GNQ 0.5439
|
| 49 |
+
37 F1 15.8910 4.3830 -16.1210 F 1 GNQ -0.1403
|
| 50 |
+
38 F2 14.1960 5.7470 -15.7220 F 1 GNQ -0.1403
|
| 51 |
+
39 F3 15.7390 5.6490 -14.3110 F 1 GNQ -0.1403
|
| 52 |
+
40 H1 15.2375 -3.8789 -3.9618 H 1 GNQ 0.0663
|
| 53 |
+
41 H2 14.1200 -4.5292 -5.2088 H 1 GNQ 0.0663
|
| 54 |
+
42 H3 11.7428 -4.6517 -4.7942 H 1 GNQ 0.0557
|
| 55 |
+
43 H4 9.9209 -4.5630 -3.1158 H 1 GNQ 0.0599
|
| 56 |
+
44 H5 10.3403 -3.5587 -0.9100 H 1 GNQ 0.0559
|
| 57 |
+
45 H6 12.5535 -2.6517 -0.3385 H 1 GNQ 0.0599
|
| 58 |
+
46 H7 14.3719 -2.6861 -2.0305 H 1 GNQ 0.0557
|
| 59 |
+
47 H8 16.5673 -3.0467 -5.7057 H 1 GNQ 0.0550
|
| 60 |
+
48 H9 16.2482 -1.4964 -6.5551 H 1 GNQ 0.0550
|
| 61 |
+
49 H10 14.7183 -2.9051 -8.1195 H 1 GNQ 0.0814
|
| 62 |
+
50 H11 15.7187 -5.0507 -6.4485 H 1 GNQ 0.1878
|
| 63 |
+
51 H12 14.8612 -6.9737 -10.3752 H 1 GNQ 0.0542
|
| 64 |
+
52 H13 13.7122 -7.8968 -9.3485 H 1 GNQ 0.0542
|
| 65 |
+
53 H14 16.6861 -8.5035 -9.7150 H 1 GNQ 0.0580
|
| 66 |
+
54 H15 15.3197 -9.4114 -10.4465 H 1 GNQ 0.0580
|
| 67 |
+
55 H16 17.1180 -8.6233 -7.4977 H 1 GNQ 0.0580
|
| 68 |
+
56 H17 15.9729 -9.4317 -6.3743 H 1 GNQ 0.0580
|
| 69 |
+
57 H18 14.3779 -7.6950 -6.5876 H 1 GNQ 0.0542
|
| 70 |
+
58 H19 15.9686 -6.8880 -6.3753 H 1 GNQ 0.0542
|
| 71 |
+
59 H20 15.6691 -1.9994 -9.8888 H 1 GNQ 0.1855
|
| 72 |
+
60 H21 18.5415 -1.7321 -10.1103 H 1 GNQ 0.0572
|
| 73 |
+
61 H22 18.7421 -3.0792 -12.1814 H 1 GNQ 0.0252
|
| 74 |
+
62 H23 17.0402 -3.6209 -11.9896 H 1 GNQ 0.0252
|
| 75 |
+
63 H24 18.2759 -4.0949 -10.7751 H 1 GNQ 0.0252
|
| 76 |
+
64 H25 16.4980 -1.3276 -12.3269 H 1 GNQ 0.0529
|
| 77 |
+
65 H26 18.1006 -0.5437 -12.1181 H 1 GNQ 0.0529
|
| 78 |
+
66 H27 16.4645 0.3531 -9.9119 H 1 GNQ 0.1723
|
| 79 |
+
67 H28 14.0573 1.0289 -11.1100 H 1 GNQ 0.0489
|
| 80 |
+
68 H29 13.1705 2.7075 -12.6628 H 1 GNQ 0.0511
|
| 81 |
+
69 H30 17.9566 1.4743 -12.8117 H 1 GNQ 0.0489
|
| 82 |
+
70 H31 17.0552 3.1574 -14.3862 H 1 GNQ 0.0511
|
| 83 |
+
@<TRIPOS>BOND
|
| 84 |
+
1 1 2 2
|
| 85 |
+
2 2 3 2
|
| 86 |
+
3 2 4 1
|
| 87 |
+
4 2 11 1
|
| 88 |
+
5 4 5 1
|
| 89 |
+
6 5 6 ar
|
| 90 |
+
7 5 10 ar
|
| 91 |
+
8 6 7 ar
|
| 92 |
+
9 7 8 ar
|
| 93 |
+
10 8 9 ar
|
| 94 |
+
11 9 10 ar
|
| 95 |
+
12 11 12 1
|
| 96 |
+
13 12 13 1
|
| 97 |
+
14 12 22 1
|
| 98 |
+
15 13 14 am
|
| 99 |
+
16 14 15 2
|
| 100 |
+
17 14 16 am
|
| 101 |
+
18 16 17 1
|
| 102 |
+
19 16 21 1
|
| 103 |
+
20 17 18 1
|
| 104 |
+
21 18 19 1
|
| 105 |
+
22 19 20 1
|
| 106 |
+
23 20 21 1
|
| 107 |
+
24 22 23 2
|
| 108 |
+
25 22 24 am
|
| 109 |
+
26 24 25 1
|
| 110 |
+
27 25 26 1
|
| 111 |
+
28 25 27 1
|
| 112 |
+
29 27 28 1
|
| 113 |
+
30 28 29 1
|
| 114 |
+
31 29 30 ar
|
| 115 |
+
32 29 32 ar
|
| 116 |
+
33 30 31 ar
|
| 117 |
+
34 31 34 ar
|
| 118 |
+
35 32 33 ar
|
| 119 |
+
36 33 34 ar
|
| 120 |
+
37 34 35 1
|
| 121 |
+
38 35 36 1
|
| 122 |
+
39 36 37 1
|
| 123 |
+
40 36 38 1
|
| 124 |
+
41 36 39 1
|
| 125 |
+
42 4 40 1
|
| 126 |
+
43 4 41 1
|
| 127 |
+
44 6 42 1
|
| 128 |
+
45 7 43 1
|
| 129 |
+
46 8 44 1
|
| 130 |
+
47 9 45 1
|
| 131 |
+
48 10 46 1
|
| 132 |
+
49 11 47 1
|
| 133 |
+
50 11 48 1
|
| 134 |
+
51 12 49 1
|
| 135 |
+
52 13 50 1
|
| 136 |
+
53 17 51 1
|
| 137 |
+
54 17 52 1
|
| 138 |
+
55 18 53 1
|
| 139 |
+
56 18 54 1
|
| 140 |
+
57 20 55 1
|
| 141 |
+
58 20 56 1
|
| 142 |
+
59 21 57 1
|
| 143 |
+
60 21 58 1
|
| 144 |
+
61 24 59 1
|
| 145 |
+
62 25 60 1
|
| 146 |
+
63 26 61 1
|
| 147 |
+
64 26 62 1
|
| 148 |
+
65 26 63 1
|
| 149 |
+
66 27 64 1
|
| 150 |
+
67 27 65 1
|
| 151 |
+
68 28 66 1
|
| 152 |
+
69 30 67 1
|
| 153 |
+
70 31 68 1
|
| 154 |
+
71 32 69 1
|
| 155 |
+
72 33 70 1
|
| 156 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 157 |
+
1 GNQ 1
|
| 158 |
+
|
2hh5/2hh5_ligand.sdf
ADDED
|
@@ -0,0 +1,148 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2hh5_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
70 72 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
14.6730 -1.1680 -4.4990 O 0 0 0 0 0
|
| 6 |
+
14.4340 -2.2650 -5.3770 S 0 0 0 0 0
|
| 7 |
+
13.3910 -2.1160 -6.3140 O 0 0 0 0 0
|
| 8 |
+
14.2960 -3.7040 -4.5030 C 0 0 0 0 0
|
| 9 |
+
13.1660 -3.6720 -3.5070 C 0 0 0 0 0
|
| 10 |
+
11.9170 -4.2050 -3.8220 C 0 0 0 0 0
|
| 11 |
+
10.8990 -4.1590 -2.8810 C 0 0 0 0 0
|
| 12 |
+
11.1390 -3.5950 -1.6420 C 0 0 0 0 0
|
| 13 |
+
12.3780 -3.0770 -1.3200 C 0 0 0 0 0
|
| 14 |
+
13.4000 -3.1050 -2.2650 C 0 0 0 0 0
|
| 15 |
+
15.8400 -2.4890 -6.3140 C 0 0 0 0 0
|
| 16 |
+
15.6420 -3.2530 -7.6340 C 0 0 0 0 0
|
| 17 |
+
15.5470 -4.6770 -7.3600 N 0 0 0 0 0
|
| 18 |
+
15.2180 -5.4600 -8.3910 C 0 0 0 0 0
|
| 19 |
+
14.9720 -4.9440 -9.4720 O 0 0 0 0 0
|
| 20 |
+
15.1590 -6.7850 -8.3010 N 0 0 0 0 0
|
| 21 |
+
14.7600 -7.5830 -9.4650 C 0 0 0 0 0
|
| 22 |
+
15.6370 -8.8070 -9.5840 C 0 0 0 0 0
|
| 23 |
+
15.4990 -9.5630 -8.3880 O 0 0 0 0 0
|
| 24 |
+
16.0570 -8.8220 -7.2860 C 0 0 0 0 0
|
| 25 |
+
15.3570 -7.5040 -7.0510 C 0 0 0 0 0
|
| 26 |
+
16.8260 -3.0280 -8.5700 C 0 0 0 0 0
|
| 27 |
+
17.9360 -3.4500 -8.2840 O 0 0 0 0 0
|
| 28 |
+
16.5950 -2.3290 -9.7040 N 0 0 0 0 0
|
| 29 |
+
17.6370 -2.0440 -10.6530 C 0 0 0 0 0
|
| 30 |
+
17.9450 -3.2960 -11.4550 C 0 0 0 0 0
|
| 31 |
+
17.2050 -0.9100 -11.5950 C 0 0 0 0 0
|
| 32 |
+
16.5480 0.2570 -10.9340 N 0 0 0 0 0
|
| 33 |
+
16.0730 1.1760 -11.8060 C 0 0 0 0 0
|
| 34 |
+
14.7270 1.5080 -11.8150 C 0 0 0 0 0
|
| 35 |
+
14.2200 2.4400 -12.7070 C 0 0 0 0 0
|
| 36 |
+
16.9100 1.7530 -12.7660 C 0 0 0 0 0
|
| 37 |
+
16.3960 2.6880 -13.6650 C 0 0 0 0 0
|
| 38 |
+
15.0300 3.0280 -13.6450 C 0 0 0 0 0
|
| 39 |
+
14.4170 3.8990 -14.5290 O 0 0 0 0 0
|
| 40 |
+
15.0880 4.9340 -15.2010 C 0 0 0 0 0
|
| 41 |
+
15.8910 4.3830 -16.1210 F 0 0 0 0 0
|
| 42 |
+
14.1960 5.7470 -15.7220 F 0 0 0 0 0
|
| 43 |
+
15.7390 5.6490 -14.3110 F 0 0 0 0 0
|
| 44 |
+
15.2246 -3.8515 -3.9516 H 0 0 0 0 0
|
| 45 |
+
14.0959 -4.5082 -5.2110 H 0 0 0 0 0
|
| 46 |
+
11.7418 -4.6541 -4.7996 H 0 0 0 0 0
|
| 47 |
+
9.9155 -4.5652 -3.1171 H 0 0 0 0 0
|
| 48 |
+
10.3359 -3.5585 -0.9059 H 0 0 0 0 0
|
| 49 |
+
12.5545 -2.6493 -0.3331 H 0 0 0 0 0
|
| 50 |
+
14.3773 -2.6838 -2.0292 H 0 0 0 0 0
|
| 51 |
+
16.5235 -3.0856 -5.7099 H 0 0 0 0 0
|
| 52 |
+
16.1960 -1.4942 -6.5818 H 0 0 0 0 0
|
| 53 |
+
14.7294 -2.8880 -8.1053 H 0 0 0 0 0
|
| 54 |
+
15.7222 -5.0582 -6.4302 H 0 0 0 0 0
|
| 55 |
+
14.8672 -6.9785 -10.3656 H 0 0 0 0 0
|
| 56 |
+
13.7234 -7.8973 -9.3436 H 0 0 0 0 0
|
| 57 |
+
16.6770 -8.5132 -9.7264 H 0 0 0 0 0
|
| 58 |
+
15.3357 -9.4044 -10.4445 H 0 0 0 0 0
|
| 59 |
+
17.0995 -8.6084 -7.5218 H 0 0 0 0 0
|
| 60 |
+
15.9418 -9.4258 -6.3859 H 0 0 0 0 0
|
| 61 |
+
14.3825 -7.7016 -6.6044 H 0 0 0 0 0
|
| 62 |
+
15.9747 -6.8939 -6.3920 H 0 0 0 0 0
|
| 63 |
+
15.6506 -1.9928 -9.8925 H 0 0 0 0 0
|
| 64 |
+
18.5315 -1.7270 -10.1168 H 0 0 0 0 0
|
| 65 |
+
18.2727 -4.0868 -10.7802 H 0 0 0 0 0
|
| 66 |
+
17.0477 -3.6169 -11.9841 H 0 0 0 0 0
|
| 67 |
+
18.7349 -3.0800 -12.1744 H 0 0 0 0 0
|
| 68 |
+
16.4694 -1.3357 -12.2775 H 0 0 0 0 0
|
| 69 |
+
18.1136 -0.5314 -12.0633 H 0 0 0 0 0
|
| 70 |
+
16.4653 0.3521 -9.9218 H 0 0 0 0 0
|
| 71 |
+
14.0536 1.0262 -11.1061 H 0 0 0 0 0
|
| 72 |
+
13.1646 2.7090 -12.6625 H 0 0 0 0 0
|
| 73 |
+
17.9624 1.4728 -12.8120 H 0 0 0 0 0
|
| 74 |
+
17.0588 3.1600 -14.3902 H 0 0 0 0 0
|
| 75 |
+
1 2 2 0 0 0
|
| 76 |
+
2 3 2 0 0 0
|
| 77 |
+
2 4 1 0 0 0
|
| 78 |
+
2 11 1 0 0 0
|
| 79 |
+
4 5 1 0 0 0
|
| 80 |
+
5 6 4 0 0 0
|
| 81 |
+
5 10 4 0 0 0
|
| 82 |
+
6 7 4 0 0 0
|
| 83 |
+
7 8 4 0 0 0
|
| 84 |
+
8 9 4 0 0 0
|
| 85 |
+
9 10 4 0 0 0
|
| 86 |
+
11 12 1 0 0 0
|
| 87 |
+
12 13 1 0 0 0
|
| 88 |
+
12 22 1 0 0 0
|
| 89 |
+
13 14 1 0 0 0
|
| 90 |
+
14 15 2 0 0 0
|
| 91 |
+
14 16 1 0 0 0
|
| 92 |
+
16 17 1 0 0 0
|
| 93 |
+
16 21 1 0 0 0
|
| 94 |
+
17 18 1 0 0 0
|
| 95 |
+
18 19 1 0 0 0
|
| 96 |
+
19 20 1 0 0 0
|
| 97 |
+
20 21 1 0 0 0
|
| 98 |
+
22 23 2 0 0 0
|
| 99 |
+
22 24 1 0 0 0
|
| 100 |
+
24 25 1 0 0 0
|
| 101 |
+
25 26 1 0 0 0
|
| 102 |
+
25 27 1 0 0 0
|
| 103 |
+
27 28 1 0 0 0
|
| 104 |
+
28 29 1 0 0 0
|
| 105 |
+
29 30 4 0 0 0
|
| 106 |
+
29 32 4 0 0 0
|
| 107 |
+
30 31 4 0 0 0
|
| 108 |
+
31 34 4 0 0 0
|
| 109 |
+
32 33 4 0 0 0
|
| 110 |
+
33 34 4 0 0 0
|
| 111 |
+
34 35 1 0 0 0
|
| 112 |
+
35 36 1 0 0 0
|
| 113 |
+
36 37 1 0 0 0
|
| 114 |
+
36 38 1 0 0 0
|
| 115 |
+
36 39 1 0 0 0
|
| 116 |
+
4 40 1 0 0 0
|
| 117 |
+
4 41 1 0 0 0
|
| 118 |
+
6 42 1 0 0 0
|
| 119 |
+
7 43 1 0 0 0
|
| 120 |
+
8 44 1 0 0 0
|
| 121 |
+
9 45 1 0 0 0
|
| 122 |
+
10 46 1 0 0 0
|
| 123 |
+
11 47 1 0 0 0
|
| 124 |
+
11 48 1 0 0 0
|
| 125 |
+
12 49 1 0 0 0
|
| 126 |
+
13 50 1 0 0 0
|
| 127 |
+
17 51 1 0 0 0
|
| 128 |
+
17 52 1 0 0 0
|
| 129 |
+
18 53 1 0 0 0
|
| 130 |
+
18 54 1 0 0 0
|
| 131 |
+
20 55 1 0 0 0
|
| 132 |
+
20 56 1 0 0 0
|
| 133 |
+
21 57 1 0 0 0
|
| 134 |
+
21 58 1 0 0 0
|
| 135 |
+
24 59 1 0 0 0
|
| 136 |
+
25 60 1 0 0 0
|
| 137 |
+
26 61 1 0 0 0
|
| 138 |
+
26 62 1 0 0 0
|
| 139 |
+
26 63 1 0 0 0
|
| 140 |
+
27 64 1 0 0 0
|
| 141 |
+
27 65 1 0 0 0
|
| 142 |
+
28 66 1 0 0 0
|
| 143 |
+
30 67 1 0 0 0
|
| 144 |
+
31 68 1 0 0 0
|
| 145 |
+
32 69 1 0 0 0
|
| 146 |
+
33 70 1 0 0 0
|
| 147 |
+
M END
|
| 148 |
+
$$$$
|
2hh5/2hh5_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2hh5/2hh5_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2hzi/2hzi_ligand.mol2
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:55 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2hzi_ligand
|
| 7 |
+
44 47 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C10 18.7180 14.5070 3.5840 C.2 1 JIN -0.0306
|
| 14 |
+
2 C12 17.6050 16.1330 4.9300 C.2 1 JIN 0.2279
|
| 15 |
+
3 C13 15.1530 16.0020 5.3110 C.3 1 JIN 0.0547
|
| 16 |
+
4 C15 22.0520 16.8670 5.8630 C.ar 1 JIN -0.0503
|
| 17 |
+
5 C16 22.4560 17.8380 4.9110 C.ar 1 JIN -0.0636
|
| 18 |
+
6 C19 20.1290 16.3200 4.5030 C.ar 1 JIN 0.0100
|
| 19 |
+
7 C20 20.8670 16.1450 5.6450 C.ar 1 JIN 0.0446
|
| 20 |
+
8 C27 12.7210 12.4780 3.1580 C.ar 1 JIN 0.0564
|
| 21 |
+
9 C30 9.9420 13.0810 3.6230 C.ar 1 JIN 0.1208
|
| 22 |
+
10 C31 10.9270 13.7090 4.3430 C.ar 1 JIN -0.0438
|
| 23 |
+
11 C34 9.2220 11.4610 1.9550 C.3 1 JIN -0.0328
|
| 24 |
+
12 F35 8.6710 13.3630 3.8870 F 1 JIN -0.1983
|
| 25 |
+
13 C29 10.3390 12.1550 2.6880 C.ar 1 JIN -0.0214
|
| 26 |
+
14 C28 11.6930 11.7860 2.4860 C.ar 1 JIN -0.0382
|
| 27 |
+
15 C26 12.2820 13.4030 4.1210 C.ar 1 JIN -0.0460
|
| 28 |
+
16 N08 13.9880 12.0550 2.8670 N.pl3 1 JIN -0.2461
|
| 29 |
+
17 C04 15.1360 12.7130 3.0870 C.ar 1 JIN 0.1969
|
| 30 |
+
18 N03 16.1630 12.1260 2.5210 N.ar 1 JIN -0.2619
|
| 31 |
+
19 C02 17.3840 12.6850 2.6400 C.ar 1 JIN 0.0170
|
| 32 |
+
20 N05 15.1830 13.8300 3.8310 N.ar 1 JIN -0.2310
|
| 33 |
+
21 C06 16.3920 14.4070 3.9860 C.ar 1 JIN 0.1654
|
| 34 |
+
22 N11 16.4410 15.4940 4.7440 N.am 1 JIN -0.1971
|
| 35 |
+
23 O14 17.5860 17.1530 5.6210 O.2 1 JIN -0.3929
|
| 36 |
+
24 C09 18.7910 15.6810 4.3350 C.2 1 JIN 0.0552
|
| 37 |
+
25 C01 17.5060 13.8530 3.4140 C.ar 1 JIN 0.0514
|
| 38 |
+
26 C18 20.5380 17.2630 3.5440 C.ar 1 JIN 0.0446
|
| 39 |
+
27 C17 21.7110 18.0230 3.7110 C.ar 1 JIN -0.0503
|
| 40 |
+
28 CL4 19.6970 17.5810 2.0470 Cl 1 JIN -0.0720
|
| 41 |
+
29 CL5 20.3770 14.9170 6.8500 Cl 1 JIN -0.0720
|
| 42 |
+
30 H1 19.6195 14.1008 3.1277 H 1 JIN 0.0728
|
| 43 |
+
31 H2 15.3471 16.9017 5.9134 H 1 JIN 0.0583
|
| 44 |
+
32 H3 14.7006 15.2261 5.9461 H 1 JIN 0.0583
|
| 45 |
+
33 H4 14.4643 16.2518 4.4904 H 1 JIN 0.0583
|
| 46 |
+
34 H5 22.6506 16.6844 6.7481 H 1 JIN 0.0617
|
| 47 |
+
35 H6 23.3363 18.4424 5.0977 H 1 JIN 0.0594
|
| 48 |
+
36 H7 10.6585 14.4476 5.0896 H 1 JIN 0.0559
|
| 49 |
+
37 H8 9.6451 10.7452 1.2349 H 1 JIN 0.0381
|
| 50 |
+
38 H9 8.6167 12.2064 1.4184 H 1 JIN 0.0381
|
| 51 |
+
39 H10 8.5881 10.9242 2.6761 H 1 JIN 0.0381
|
| 52 |
+
40 H11 11.9379 10.9712 1.8143 H 1 JIN 0.0466
|
| 53 |
+
41 H12 13.0275 13.9076 4.7249 H 1 JIN 0.0474
|
| 54 |
+
42 H13 14.0704 11.1262 2.4294 H 1 JIN 0.2187
|
| 55 |
+
43 H14 18.2475 12.2466 2.1528 H 1 JIN 0.0898
|
| 56 |
+
44 H15 22.0364 18.7253 2.9521 H 1 JIN 0.0617
|
| 57 |
+
@<TRIPOS>BOND
|
| 58 |
+
1 1 24 2
|
| 59 |
+
2 25 1 1
|
| 60 |
+
3 2 22 am
|
| 61 |
+
4 2 23 2
|
| 62 |
+
5 24 2 1
|
| 63 |
+
6 22 3 1
|
| 64 |
+
7 4 5 ar
|
| 65 |
+
8 7 4 ar
|
| 66 |
+
9 5 27 ar
|
| 67 |
+
10 6 7 ar
|
| 68 |
+
11 24 6 1
|
| 69 |
+
12 6 26 ar
|
| 70 |
+
13 7 29 1
|
| 71 |
+
14 8 14 ar
|
| 72 |
+
15 8 15 ar
|
| 73 |
+
16 16 8 1
|
| 74 |
+
17 10 9 ar
|
| 75 |
+
18 9 12 1
|
| 76 |
+
19 13 9 ar
|
| 77 |
+
20 15 10 ar
|
| 78 |
+
21 13 11 1
|
| 79 |
+
22 14 13 ar
|
| 80 |
+
23 17 16 1
|
| 81 |
+
24 18 17 ar
|
| 82 |
+
25 17 20 ar
|
| 83 |
+
26 19 18 ar
|
| 84 |
+
27 19 25 ar
|
| 85 |
+
28 20 21 ar
|
| 86 |
+
29 21 22 1
|
| 87 |
+
30 21 25 ar
|
| 88 |
+
31 26 27 ar
|
| 89 |
+
32 26 28 1
|
| 90 |
+
33 1 30 1
|
| 91 |
+
34 3 31 1
|
| 92 |
+
35 3 32 1
|
| 93 |
+
36 3 33 1
|
| 94 |
+
37 4 34 1
|
| 95 |
+
38 5 35 1
|
| 96 |
+
39 10 36 1
|
| 97 |
+
40 11 37 1
|
| 98 |
+
41 11 38 1
|
| 99 |
+
42 11 39 1
|
| 100 |
+
43 14 40 1
|
| 101 |
+
44 15 41 1
|
| 102 |
+
45 16 42 1
|
| 103 |
+
46 19 43 1
|
| 104 |
+
47 27 44 1
|
| 105 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 106 |
+
1 JIN 1
|
| 107 |
+
|
2hzi/2hzi_ligand.sdf
ADDED
|
@@ -0,0 +1,97 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
2hzi_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
44 47 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
18.7180 14.5070 3.5840 C 0 0 0 0 0
|
| 6 |
+
17.6050 16.1330 4.9300 C 0 0 0 0 0
|
| 7 |
+
15.1530 16.0020 5.3110 C 0 0 0 0 0
|
| 8 |
+
22.0520 16.8670 5.8630 C 0 0 0 0 0
|
| 9 |
+
22.4560 17.8380 4.9110 C 0 0 0 0 0
|
| 10 |
+
20.1290 16.3200 4.5030 C 0 0 0 0 0
|
| 11 |
+
20.8670 16.1450 5.6450 C 0 0 0 0 0
|
| 12 |
+
12.7210 12.4780 3.1580 C 0 0 0 0 0
|
| 13 |
+
9.9420 13.0810 3.6230 C 0 0 0 0 0
|
| 14 |
+
10.9270 13.7090 4.3430 C 0 0 0 0 0
|
| 15 |
+
9.2220 11.4610 1.9550 C 0 0 0 0 0
|
| 16 |
+
8.6710 13.3630 3.8870 F 0 0 0 0 0
|
| 17 |
+
10.3390 12.1550 2.6880 C 0 0 0 0 0
|
| 18 |
+
11.6930 11.7860 2.4860 C 0 0 0 0 0
|
| 19 |
+
12.2820 13.4030 4.1210 C 0 0 0 0 0
|
| 20 |
+
13.9880 12.0550 2.8670 N 0 0 0 0 0
|
| 21 |
+
15.1360 12.7130 3.0870 C 0 0 0 0 0
|
| 22 |
+
16.1630 12.1260 2.5210 N 0 0 0 0 0
|
| 23 |
+
17.3840 12.6850 2.6400 C 0 0 0 0 0
|
| 24 |
+
15.1830 13.8300 3.8310 N 0 0 0 0 0
|
| 25 |
+
16.3920 14.4070 3.9860 C 0 0 0 0 0
|
| 26 |
+
16.4410 15.4940 4.7440 N 0 0 0 0 0
|
| 27 |
+
17.5860 17.1530 5.6210 O 0 0 0 0 0
|
| 28 |
+
18.7910 15.6810 4.3350 C 0 0 0 0 0
|
| 29 |
+
17.5060 13.8530 3.4140 C 0 0 0 0 0
|
| 30 |
+
20.5380 17.2630 3.5440 C 0 0 0 0 0
|
| 31 |
+
21.7110 18.0230 3.7110 C 0 0 0 0 0
|
| 32 |
+
19.6970 17.5810 2.0470 Cl 0 0 0 0 0
|
| 33 |
+
20.3770 14.9170 6.8500 Cl 0 0 0 0 0
|
| 34 |
+
19.6203 14.1005 3.1273 H 0 0 0 0 0
|
| 35 |
+
14.4715 16.2491 4.4970 H 0 0 0 0 0
|
| 36 |
+
14.7057 15.2323 5.9400 H 0 0 0 0 0
|
| 37 |
+
15.3467 16.8934 5.9077 H 0 0 0 0 0
|
| 38 |
+
22.6539 16.6834 6.7530 H 0 0 0 0 0
|
| 39 |
+
23.3412 18.4458 5.0987 H 0 0 0 0 0
|
| 40 |
+
10.6571 14.4517 5.0938 H 0 0 0 0 0
|
| 41 |
+
8.5946 10.9296 2.6706 H 0 0 0 0 0
|
| 42 |
+
8.6230 12.2007 1.4238 H 0 0 0 0 0
|
| 43 |
+
9.6425 10.7520 1.2418 H 0 0 0 0 0
|
| 44 |
+
11.9392 10.9667 1.8106 H 0 0 0 0 0
|
| 45 |
+
13.0316 13.9104 4.7283 H 0 0 0 0 0
|
| 46 |
+
14.0696 11.1352 2.4337 H 0 0 0 0 0
|
| 47 |
+
18.2522 12.2442 2.1502 H 0 0 0 0 0
|
| 48 |
+
22.0382 18.7292 2.9479 H 0 0 0 0 0
|
| 49 |
+
1 24 2 0 0 0
|
| 50 |
+
25 1 1 0 0 0
|
| 51 |
+
2 22 1 0 0 0
|
| 52 |
+
2 23 2 0 0 0
|
| 53 |
+
24 2 1 0 0 0
|
| 54 |
+
22 3 1 0 0 0
|
| 55 |
+
4 5 4 0 0 0
|
| 56 |
+
7 4 4 0 0 0
|
| 57 |
+
5 27 4 0 0 0
|
| 58 |
+
6 7 4 0 0 0
|
| 59 |
+
24 6 1 0 0 0
|
| 60 |
+
6 26 4 0 0 0
|
| 61 |
+
7 29 1 0 0 0
|
| 62 |
+
8 14 4 0 0 0
|
| 63 |
+
8 15 4 0 0 0
|
| 64 |
+
16 8 1 0 0 0
|
| 65 |
+
10 9 4 0 0 0
|
| 66 |
+
9 12 1 0 0 0
|
| 67 |
+
13 9 4 0 0 0
|
| 68 |
+
15 10 4 0 0 0
|
| 69 |
+
13 11 1 0 0 0
|
| 70 |
+
14 13 4 0 0 0
|
| 71 |
+
17 16 1 0 0 0
|
| 72 |
+
18 17 4 0 0 0
|
| 73 |
+
17 20 4 0 0 0
|
| 74 |
+
19 18 4 0 0 0
|
| 75 |
+
19 25 4 0 0 0
|
| 76 |
+
20 21 4 0 0 0
|
| 77 |
+
21 22 1 0 0 0
|
| 78 |
+
21 25 4 0 0 0
|
| 79 |
+
26 27 4 0 0 0
|
| 80 |
+
26 28 1 0 0 0
|
| 81 |
+
1 30 1 0 0 0
|
| 82 |
+
3 31 1 0 0 0
|
| 83 |
+
3 32 1 0 0 0
|
| 84 |
+
3 33 1 0 0 0
|
| 85 |
+
4 34 1 0 0 0
|
| 86 |
+
5 35 1 0 0 0
|
| 87 |
+
10 36 1 0 0 0
|
| 88 |
+
11 37 1 0 0 0
|
| 89 |
+
11 38 1 0 0 0
|
| 90 |
+
11 39 1 0 0 0
|
| 91 |
+
14 40 1 0 0 0
|
| 92 |
+
15 41 1 0 0 0
|
| 93 |
+
16 42 1 0 0 0
|
| 94 |
+
19 43 1 0 0 0
|
| 95 |
+
27 44 1 0 0 0
|
| 96 |
+
M END
|
| 97 |
+
$$$$
|