Datasets:

linbc20 commited on
Commit
d81da19
·
verified ·
1 Parent(s): d451f74

Add batch 149

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. 1b3h/1b3h_ligand.mol2 +162 -0
  2. 1b3h/1b3h_ligand.sdf +154 -0
  3. 1b3h/1b3h_protein_esmfold_aligned_tr_fix.pdb +0 -0
  4. 1b3h/1b3h_protein_processed_fix.pdb +0 -0
  5. 1c5o/1c5o_ligand.mol2 +52 -0
  6. 1c5o/1c5o_ligand.sdf +40 -0
  7. 1c5o/1c5o_protein_esmfold_aligned_tr_fix.pdb +0 -0
  8. 1c5o/1c5o_protein_processed_fix.pdb +0 -0
  9. 1em6/1em6_ligand.mol2 +135 -0
  10. 1em6/1em6_ligand.sdf +121 -0
  11. 1em6/1em6_protein_esmfold_aligned_tr_fix.pdb +0 -0
  12. 1em6/1em6_protein_processed_fix.pdb +0 -0
  13. 1g85/1g85_ligand.mol2 +69 -0
  14. 1g85/1g85_ligand.sdf +59 -0
  15. 1g85/1g85_protein_esmfold_aligned_tr_fix.pdb +0 -0
  16. 1g85/1g85_protein_processed_fix.pdb +0 -0
  17. 1h3a/1h3a_ligand.mol2 +122 -0
  18. 1h3a/1h3a_ligand.sdf +112 -0
  19. 1h3a/1h3a_protein_esmfold_aligned_tr_fix.pdb +0 -0
  20. 1h3a/1h3a_protein_processed_fix.pdb +0 -0
  21. 1nde/1nde_ligand.mol2 +145 -0
  22. 1nde/1nde_ligand.sdf +135 -0
  23. 1nde/1nde_protein_esmfold_aligned_tr_fix.pdb +0 -0
  24. 1nde/1nde_protein_processed_fix.pdb +0 -0
  25. 1ndv/1ndv_ligand.mol2 +101 -0
  26. 1ndv/1ndv_ligand.sdf +87 -0
  27. 1ndv/1ndv_protein_esmfold_aligned_tr_fix.pdb +0 -0
  28. 1ndv/1ndv_protein_processed_fix.pdb +0 -0
  29. 1ngw/1ngw_ligand.mol2 +188 -0
  30. 1ngw/1ngw_ligand.sdf +174 -0
  31. 1ngw/1ngw_protein_esmfold_aligned_tr_fix.pdb +0 -0
  32. 1ngw/1ngw_protein_processed_fix.pdb +0 -0
  33. 2bo4/2bo4_ligand.mol2 +51 -0
  34. 2bo4/2bo4_ligand.sdf +47 -0
  35. 2bo4/2bo4_protein_esmfold_aligned_tr_fix.pdb +0 -0
  36. 2bo4/2bo4_protein_processed_fix.pdb +0 -0
  37. 2brm/2brm_ligand.mol2 +105 -0
  38. 2brm/2brm_ligand.sdf +93 -0
  39. 2brm/2brm_protein_esmfold_aligned_tr_fix.pdb +0 -0
  40. 2brm/2brm_protein_processed_fix.pdb +0 -0
  41. 2byh/2byh_ligand.mol2 +98 -0
  42. 2byh/2byh_ligand.sdf +86 -0
  43. 2byh/2byh_protein_esmfold_aligned_tr_fix.pdb +0 -0
  44. 2byh/2byh_protein_processed_fix.pdb +0 -0
  45. 2hh5/2hh5_ligand.mol2 +158 -0
  46. 2hh5/2hh5_ligand.sdf +148 -0
  47. 2hh5/2hh5_protein_esmfold_aligned_tr_fix.pdb +0 -0
  48. 2hh5/2hh5_protein_processed_fix.pdb +0 -0
  49. 2hzi/2hzi_ligand.mol2 +107 -0
  50. 2hzi/2hzi_ligand.sdf +97 -0
1b3h/1b3h_ligand.mol2 ADDED
@@ -0,0 +1,162 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:46 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1b3h_ligand
7
+ 73 73 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 N 6.9910 16.6240 15.2240 N.4 1 LYS 0.2379
14
+ 2 CA 6.6310 17.9840 14.6770 C.3 1 LYS 0.0650
15
+ 3 C 5.3960 18.5290 15.3820 C.2 1 LYS 0.2267
16
+ 4 O 4.6070 17.7360 15.8990 O.2 1 LYS -0.3907
17
+ 5 CB 6.4400 17.9170 13.1440 C.3 1 LYS 0.0080
18
+ 6 CG 5.3720 16.9100 12.6970 C.3 1 LYS -0.0410
19
+ 7 CD 5.3310 16.7550 11.1780 C.3 1 LYS -0.0123
20
+ 8 CE 6.6420 16.2530 10.5790 C.3 1 LYS -0.0354
21
+ 9 NZ 6.7580 14.7730 10.8530 N.4 1 LYS 0.2185
22
+ 10 N 5.2020 19.8410 15.4620 N.am 1 ALC -0.2610
23
+ 11 CA 4.0680 20.4700 16.0990 C.3 1 ALC 0.1313
24
+ 12 C 2.7730 20.4260 15.2790 C.2 1 ALC 0.2034
25
+ 13 O 2.6950 20.7490 14.0800 O.2 1 ALC -0.3944
26
+ 14 CB 4.3500 21.9470 16.4480 C.3 1 ALC -0.0096
27
+ 15 CG 5.1730 22.0820 17.7930 C.3 1 ALC -0.0368
28
+ 16 CD2 4.9840 23.5300 18.3200 C.3 1 ALC -0.0500
29
+ 17 CE2 5.8770 23.8190 19.5390 C.3 1 ALC -0.0528
30
+ 18 CZ 7.3610 23.5330 19.2530 C.3 1 ALC -0.0530
31
+ 19 CE1 7.5790 22.1440 18.6200 C.3 1 ALC -0.0528
32
+ 20 CD1 6.6740 21.9280 17.4160 C.3 1 ALC -0.0500
33
+ 21 N 1.6840 20.0100 15.9440 N.am 1 LYS -0.2695
34
+ 22 CA 0.3890 19.9600 15.3340 C.3 1 LYS 0.0944
35
+ 23 C -0.5990 20.8560 16.1180 C.2 1 LYS 0.0601
36
+ 24 O -1.6080 21.2620 15.5260 O.co2 1 LYS -0.5666
37
+ 25 CB -0.2140 18.5380 15.2960 C.3 1 LYS -0.0177
38
+ 26 CG -1.2060 18.5350 14.1010 C.3 1 LYS -0.0446
39
+ 27 CD -2.1920 17.4180 14.3230 C.3 1 LYS -0.0125
40
+ 28 CE -2.8130 16.8010 13.0950 C.3 1 LYS -0.0354
41
+ 29 NZ -3.1180 17.6700 11.9600 N.4 1 LYS 0.2185
42
+ 30 OXT -0.3650 21.2090 17.2690 O.co2 1 LYS -0.5666
43
+ 31 H1 7.8091 16.2764 14.7486 H 1 LYS 0.2015
44
+ 32 H2 6.2222 15.9887 15.0778 H 1 LYS 0.2015
45
+ 33 H3 7.1823 16.6986 16.2109 H 1 LYS 0.2015
46
+ 34 H4 7.4669 18.6687 14.8830 H 1 LYS 0.1098
47
+ 35 H5 7.3989 17.6313 12.6871 H 1 LYS 0.0346
48
+ 36 H6 6.1466 18.9152 12.7870 H 1 LYS 0.0346
49
+ 37 H7 4.3882 17.2579 13.0450 H 1 LYS 0.0270
50
+ 38 H8 5.5956 15.9318 13.1477 H 1 LYS 0.0270
51
+ 39 H9 5.0988 17.7346 10.7347 H 1 LYS 0.0317
52
+ 40 H10 4.5357 16.0392 10.9229 H 1 LYS 0.0317
53
+ 41 H11 7.4880 16.7832 11.0407 H 1 LYS 0.0813
54
+ 42 H12 6.6461 16.4308 9.4935 H 1 LYS 0.0813
55
+ 43 H13 7.6202 14.4257 10.4630 H 1 LYS 0.1994
56
+ 44 H14 5.9800 14.2911 10.4306 H 1 LYS 0.1994
57
+ 45 H15 6.7514 14.6140 11.8483 H 1 LYS 0.1994
58
+ 46 H16 5.8918 20.4371 15.0510 H 1 ALC 0.1884
59
+ 47 H17 3.8871 19.9246 17.0370 H 1 ALC 0.0800
60
+ 48 H18 3.3922 22.4760 16.5612 H 1 ALC 0.0315
61
+ 49 H19 4.9264 22.4032 15.6297 H 1 ALC 0.0315
62
+ 50 H20 4.8596 21.3356 18.5377 H 1 ALC 0.0303
63
+ 51 H21 3.9318 23.6684 18.6094 H 1 ALC 0.0268
64
+ 52 H22 5.2394 24.2368 17.5168 H 1 ALC 0.0268
65
+ 53 H23 5.5492 23.1856 20.3764 H 1 ALC 0.0265
66
+ 54 H24 5.7673 24.8780 19.8154 H 1 ALC 0.0265
67
+ 55 H25 7.9193 23.5816 20.1996 H 1 ALC 0.0265
68
+ 56 H26 7.7422 24.2998 18.5626 H 1 ALC 0.0265
69
+ 57 H27 7.3626 21.3711 19.3722 H 1 ALC 0.0265
70
+ 58 H28 8.6274 22.0591 18.2981 H 1 ALC 0.0265
71
+ 59 H29 6.9257 22.6688 16.6428 H 1 ALC 0.0268
72
+ 60 H30 6.8408 20.9149 17.0213 H 1 ALC 0.0268
73
+ 61 H31 1.7799 19.7253 16.8978 H 1 LYS 0.1875
74
+ 62 H32 0.4806 20.3323 14.3030 H 1 LYS 0.0726
75
+ 63 H33 -0.7440 18.3207 16.2351 H 1 LYS 0.0305
76
+ 64 H34 0.5771 17.7898 15.1398 H 1 LYS 0.0305
77
+ 65 H35 -0.6590 18.3697 13.1611 H 1 LYS 0.0269
78
+ 66 H36 -1.7360 19.4976 14.0524 H 1 LYS 0.0269
79
+ 67 H37 -3.0084 17.8142 14.9446 H 1 LYS 0.0317
80
+ 68 H38 -1.6704 16.6181 14.8690 H 1 LYS 0.0317
81
+ 69 H39 -3.7573 16.3319 13.4086 H 1 LYS 0.0813
82
+ 70 H40 -2.1205 16.0261 12.7346 H 1 LYS 0.0813
83
+ 71 H41 -3.5258 17.1229 11.2181 H 1 LYS 0.1994
84
+ 72 H42 -2.2694 18.1030 11.6308 H 1 LYS 0.1994
85
+ 73 H43 -3.7692 18.3833 12.2484 H 1 LYS 0.1994
86
+ @<TRIPOS>BOND
87
+ 1 3 2 1
88
+ 2 2 5 1
89
+ 3 2 1 1
90
+ 4 5 6 1
91
+ 5 6 7 1
92
+ 6 7 8 1
93
+ 7 8 9 1
94
+ 8 3 4 2
95
+ 9 11 10 1
96
+ 10 11 14 1
97
+ 11 12 11 1
98
+ 12 12 13 2
99
+ 13 14 15 1
100
+ 14 15 20 1
101
+ 15 15 16 1
102
+ 16 16 17 1
103
+ 17 17 18 1
104
+ 18 19 18 1
105
+ 19 20 19 1
106
+ 20 22 23 1
107
+ 21 22 25 1
108
+ 22 21 22 1
109
+ 23 25 26 1
110
+ 24 26 27 1
111
+ 25 27 28 1
112
+ 26 28 29 1
113
+ 27 23 30 ar
114
+ 28 23 24 ar
115
+ 29 10 3 am
116
+ 30 12 21 am
117
+ 31 1 31 1
118
+ 32 1 32 1
119
+ 33 1 33 1
120
+ 34 2 34 1
121
+ 35 5 35 1
122
+ 36 5 36 1
123
+ 37 6 37 1
124
+ 38 6 38 1
125
+ 39 7 39 1
126
+ 40 7 40 1
127
+ 41 8 41 1
128
+ 42 8 42 1
129
+ 43 9 43 1
130
+ 44 9 44 1
131
+ 45 9 45 1
132
+ 46 10 46 1
133
+ 47 11 47 1
134
+ 48 14 48 1
135
+ 49 14 49 1
136
+ 50 15 50 1
137
+ 51 16 51 1
138
+ 52 16 52 1
139
+ 53 17 53 1
140
+ 54 17 54 1
141
+ 55 18 55 1
142
+ 56 18 56 1
143
+ 57 19 57 1
144
+ 58 19 58 1
145
+ 59 20 59 1
146
+ 60 20 60 1
147
+ 61 21 61 1
148
+ 62 22 62 1
149
+ 63 25 63 1
150
+ 64 25 64 1
151
+ 65 26 65 1
152
+ 66 26 66 1
153
+ 67 27 67 1
154
+ 68 27 68 1
155
+ 69 28 69 1
156
+ 70 28 70 1
157
+ 71 29 71 1
158
+ 72 29 72 1
159
+ 73 29 73 1
160
+ @<TRIPOS>SUBSTRUCTURE
161
+ 1 LYS 1
162
+
1b3h/1b3h_ligand.sdf ADDED
@@ -0,0 +1,154 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1b3h_ligand
2
+ -I-interpret-
3
+
4
+ 74 74 0 0 0 0 0 0 0 0999 V2000
5
+ 6.9910 16.6240 15.2240 N 0 3 0 0 0
6
+ 6.6310 17.9840 14.6770 C 0 0 0 0 0
7
+ 5.3960 18.5290 15.3820 C 0 0 0 0 0
8
+ 4.6070 17.7360 15.8990 O 0 0 0 0 0
9
+ 6.4400 17.9170 13.1440 C 0 0 0 0 0
10
+ 5.3720 16.9100 12.6970 C 0 0 0 0 0
11
+ 5.3310 16.7550 11.1780 C 0 0 0 0 0
12
+ 6.6420 16.2530 10.5790 C 0 0 0 0 0
13
+ 6.7580 14.7730 10.8530 N 0 3 0 0 0
14
+ 5.2020 19.8410 15.4620 N 0 0 0 0 0
15
+ 4.0680 20.4700 16.0990 C 0 0 0 0 0
16
+ 2.7730 20.4260 15.2790 C 0 0 0 0 0
17
+ 2.6950 20.7490 14.0800 O 0 0 0 0 0
18
+ 4.3500 21.9470 16.4480 C 0 0 0 0 0
19
+ 5.1730 22.0820 17.7930 C 0 0 0 0 0
20
+ 4.9840 23.5300 18.3200 C 0 0 0 0 0
21
+ 5.8770 23.8190 19.5390 C 0 0 0 0 0
22
+ 7.3610 23.5330 19.2530 C 0 0 0 0 0
23
+ 7.5790 22.1440 18.6200 C 0 0 0 0 0
24
+ 6.6740 21.9280 17.4160 C 0 0 0 0 0
25
+ 1.6840 20.0100 15.9440 N 0 0 0 0 0
26
+ 0.3890 19.9600 15.3340 C 0 0 0 0 0
27
+ -0.5990 20.8560 16.1180 C 0 0 0 0 0
28
+ -1.6080 21.2620 15.5260 O 0 0 0 0 0
29
+ -0.2140 18.5380 15.2960 C 0 0 0 0 0
30
+ -1.2060 18.5350 14.1010 C 0 0 0 0 0
31
+ -2.1920 17.4180 14.3230 C 0 0 0 0 0
32
+ -2.8130 16.8010 13.0950 C 0 0 0 0 0
33
+ -3.1180 17.6700 11.9600 N 0 3 0 0 0
34
+ -0.3650 21.2090 17.2690 O 0 0 0 0 0
35
+ 7.1130 16.6868 16.2347 H 0 0 0 0 0
36
+ 6.2428 15.9642 15.0110 H 0 0 0 0 0
37
+ 7.8596 16.3052 14.7946 H 0 0 0 0 0
38
+ 7.4510 18.6750 14.8727 H 0 0 0 0 0
39
+ 7.3886 17.5985 12.7117 H 0 0 0 0 0
40
+ 6.1155 18.9036 12.8132 H 0 0 0 0 0
41
+ 4.3998 17.2748 13.0285 H 0 0 0 0 0
42
+ 5.6147 15.9404 13.1319 H 0 0 0 0 0
43
+ 5.1342 17.7398 10.7543 H 0 0 0 0 0
44
+ 4.5623 16.0181 10.9455 H 0 0 0 0 0
45
+ 7.4828 16.7816 11.0281 H 0 0 0 0 0
46
+ 6.6537 16.4345 9.5043 H 0 0 0 0 0
47
+ 7.6307 14.4227 10.4579 H 0 0 0 0 0
48
+ 6.7512 14.6134 11.8604 H 0 0 0 0 0
49
+ 5.9702 14.2865 10.4251 H 0 0 0 0 0
50
+ 5.9056 20.4490 15.0428 H 0 0 0 0 0
51
+ 3.9199 19.8768 17.0014 H 0 0 0 0 0
52
+ 3.3960 22.4585 16.5756 H 0 0 0 0 0
53
+ 4.9363 22.3854 15.6404 H 0 0 0 0 0
54
+ 4.8554 21.3469 18.5325 H 0 0 0 0 0
55
+ 3.9438 23.6502 18.6226 H 0 0 0 0 0
56
+ 5.2588 24.2217 17.5237 H 0 0 0 0 0
57
+ 5.5577 23.1703 20.3547 H 0 0 0 0 0
58
+ 5.7773 24.8751 19.7896 H 0 0 0 0 0
59
+ 7.8990 23.5606 20.2006 H 0 0 0 0 0
60
+ 7.7205 24.2846 18.5502 H 0 0 0 0 0
61
+ 7.3453 21.3851 19.3667 H 0 0 0 0 0
62
+ 8.6151 22.0758 18.2883 H 0 0 0 0 0
63
+ 6.9184 22.6769 16.6627 H 0 0 0 0 0
64
+ 6.8332 20.9164 17.0426 H 0 0 0 0 0
65
+ 1.7819 19.7196 16.9169 H 0 0 0 0 0
66
+ 0.5297 20.3055 14.3098 H 0 0 0 0 0
67
+ -1.6315 20.8877 14.6423 H 0 0 0 0 0
68
+ -0.7174 18.2942 16.2316 H 0 0 0 0 0
69
+ 0.5602 17.7807 15.1723 H 0 0 0 0 0
70
+ -0.6692 18.3850 13.1643 H 0 0 0 0 0
71
+ -1.7255 19.4912 14.0384 H 0 0 0 0 0
72
+ -3.0163 17.8555 14.8862 H 0 0 0 0 0
73
+ -1.6323 16.6182 14.8080 H 0 0 0 0 0
74
+ -3.7766 16.4134 13.4257 H 0 0 0 0 0
75
+ -2.0708 16.0946 12.7232 H 0 0 0 0 0
76
+ -3.5305 17.1154 11.2099 H 0 0 0 0 0
77
+ -3.7770 18.3913 12.2530 H 0 0 0 0 0
78
+ -2.2586 18.1076 11.6278 H 0 0 0 0 0
79
+ 3 2 1 0 0 0
80
+ 2 5 1 0 0 0
81
+ 2 1 1 0 0 0
82
+ 5 6 1 0 0 0
83
+ 6 7 1 0 0 0
84
+ 7 8 1 0 0 0
85
+ 8 9 1 0 0 0
86
+ 3 4 2 0 0 0
87
+ 11 10 1 0 0 0
88
+ 11 14 1 0 0 0
89
+ 12 11 1 0 0 0
90
+ 12 13 2 0 0 0
91
+ 14 15 1 0 0 0
92
+ 15 20 1 0 0 0
93
+ 15 16 1 0 0 0
94
+ 16 17 1 0 0 0
95
+ 17 18 1 0 0 0
96
+ 19 18 1 0 0 0
97
+ 20 19 1 0 0 0
98
+ 22 23 1 0 0 0
99
+ 22 25 1 0 0 0
100
+ 21 22 1 0 0 0
101
+ 25 26 1 0 0 0
102
+ 26 27 1 0 0 0
103
+ 27 28 1 0 0 0
104
+ 28 29 1 0 0 0
105
+ 23 30 2 0 0 0
106
+ 23 24 1 0 0 0
107
+ 10 3 1 0 0 0
108
+ 12 21 1 0 0 0
109
+ 1 31 1 0 0 0
110
+ 1 32 1 0 0 0
111
+ 1 33 1 0 0 0
112
+ 2 34 1 0 0 0
113
+ 5 35 1 0 0 0
114
+ 5 36 1 0 0 0
115
+ 6 37 1 0 0 0
116
+ 6 38 1 0 0 0
117
+ 7 39 1 0 0 0
118
+ 7 40 1 0 0 0
119
+ 8 41 1 0 0 0
120
+ 8 42 1 0 0 0
121
+ 9 43 1 0 0 0
122
+ 9 44 1 0 0 0
123
+ 9 45 1 0 0 0
124
+ 10 46 1 0 0 0
125
+ 11 47 1 0 0 0
126
+ 14 48 1 0 0 0
127
+ 14 49 1 0 0 0
128
+ 15 50 1 0 0 0
129
+ 16 51 1 0 0 0
130
+ 16 52 1 0 0 0
131
+ 17 53 1 0 0 0
132
+ 17 54 1 0 0 0
133
+ 18 55 1 0 0 0
134
+ 18 56 1 0 0 0
135
+ 19 57 1 0 0 0
136
+ 19 58 1 0 0 0
137
+ 20 59 1 0 0 0
138
+ 20 60 1 0 0 0
139
+ 21 61 1 0 0 0
140
+ 22 62 1 0 0 0
141
+ 24 63 1 0 0 0
142
+ 25 64 1 0 0 0
143
+ 25 65 1 0 0 0
144
+ 26 66 1 0 0 0
145
+ 26 67 1 0 0 0
146
+ 27 68 1 0 0 0
147
+ 27 69 1 0 0 0
148
+ 28 70 1 0 0 0
149
+ 28 71 1 0 0 0
150
+ 29 72 1 0 0 0
151
+ 29 73 1 0 0 0
152
+ 29 74 1 0 0 0
153
+ M END
154
+ $$$$
1b3h/1b3h_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1b3h/1b3h_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1c5o/1c5o_ligand.mol2 ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:47 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1c5o_ligand
7
+ 18 18 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C1 11.8270 -11.7370 23.1510 C.ar 1 BAM 0.0260
14
+ 2 C2 12.2520 -12.9160 22.5400 C.ar 1 BAM -0.0565
15
+ 3 C3 13.1770 -12.8950 21.5060 C.ar 1 BAM -0.0618
16
+ 4 C4 13.7030 -11.6970 21.0520 C.ar 1 BAM -0.0618
17
+ 5 C5 13.3090 -10.5250 21.6260 C.ar 1 BAM -0.0618
18
+ 6 C6 12.3830 -10.5490 22.6610 C.ar 1 BAM -0.0565
19
+ 7 C 10.9010 -11.7410 24.2070 C.cat 1 BAM 0.2356
20
+ 8 N1 10.3210 -12.8610 24.5160 N.pl3 1 BAM -0.2721
21
+ 9 N2 10.6290 -10.6390 24.8750 N.pl3 1 BAM -0.2721
22
+ 10 H1 11.8529 -13.8653 22.8786 H 1 BAM 0.0617
23
+ 11 H2 13.4913 -13.8262 21.0487 H 1 BAM 0.0618
24
+ 12 H3 14.4251 -11.6913 20.2435 H 1 BAM 0.0618
25
+ 13 H4 13.7150 -9.5822 21.2776 H 1 BAM 0.0618
26
+ 14 H5 12.0783 -9.6095 23.1077 H 1 BAM 0.0617
27
+ 15 H6 9.6379 -12.8918 25.2862 H 1 BAM 0.3181
28
+ 16 H7 10.5441 -13.7185 23.9908 H 1 BAM 0.3181
29
+ 17 H8 11.0943 -9.7555 24.6223 H 1 BAM 0.3181
30
+ 18 H9 9.9510 -10.6607 25.6501 H 1 BAM 0.3181
31
+ @<TRIPOS>BOND
32
+ 1 7 1 1
33
+ 2 1 6 ar
34
+ 3 1 2 ar
35
+ 4 2 3 ar
36
+ 5 3 4 ar
37
+ 6 4 5 ar
38
+ 7 6 5 ar
39
+ 8 7 9 ar
40
+ 9 7 8 ar
41
+ 10 2 10 1
42
+ 11 3 11 1
43
+ 12 4 12 1
44
+ 13 5 13 1
45
+ 14 6 14 1
46
+ 15 8 15 1
47
+ 16 8 16 1
48
+ 17 9 17 1
49
+ 18 9 18 1
50
+ @<TRIPOS>SUBSTRUCTURE
51
+ 1 BAM 1
52
+
1c5o/1c5o_ligand.sdf ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1c5o_ligand
2
+ -I-interpret-
3
+
4
+ 17 17 0 0 0 0 0 0 0 0999 V2000
5
+ 11.8270 -11.7370 23.1510 C 0 0 0 0 0
6
+ 12.2520 -12.9160 22.5400 C 0 0 0 0 0
7
+ 13.1770 -12.8950 21.5060 C 0 0 0 0 0
8
+ 13.7030 -11.6970 21.0520 C 0 0 0 0 0
9
+ 13.3090 -10.5250 21.6260 C 0 0 0 0 0
10
+ 12.3830 -10.5490 22.6610 C 0 0 0 0 0
11
+ 10.9010 -11.7410 24.2070 C 0 0 0 0 0
12
+ 10.3210 -12.8610 24.5160 N 0 0 0 0 0
13
+ 10.6290 -10.6390 24.8750 N 0 0 0 0 0
14
+ 11.8507 -13.8706 22.8805 H 0 0 0 0 0
15
+ 13.4930 -13.8314 21.0461 H 0 0 0 0 0
16
+ 14.4291 -11.6913 20.2390 H 0 0 0 0 0
17
+ 13.7172 -9.5770 21.2757 H 0 0 0 0 0
18
+ 12.0766 -9.6043 23.1102 H 0 0 0 0 0
19
+ 9.6482 -12.8926 25.2820 H 0 0 0 0 0
20
+ 9.9576 -10.6605 25.6426 H 0 0 0 0 0
21
+ 11.0898 -9.7641 24.6248 H 0 0 0 0 0
22
+ 7 1 1 0 0 0
23
+ 1 6 4 0 0 0
24
+ 1 2 4 0 0 0
25
+ 2 3 4 0 0 0
26
+ 3 4 4 0 0 0
27
+ 4 5 4 0 0 0
28
+ 6 5 4 0 0 0
29
+ 7 9 1 0 0 0
30
+ 7 8 2 0 0 0
31
+ 2 10 1 0 0 0
32
+ 3 11 1 0 0 0
33
+ 4 12 1 0 0 0
34
+ 5 13 1 0 0 0
35
+ 6 14 1 0 0 0
36
+ 8 15 1 0 0 0
37
+ 9 16 1 0 0 0
38
+ 9 17 1 0 0 0
39
+ M END
40
+ $$$$
1c5o/1c5o_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1c5o/1c5o_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1em6/1em6_ligand.mol2 ADDED
@@ -0,0 +1,135 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:48 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1em6_ligand
7
+ 58 61 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C0 -6.1280 35.0740 73.0490 C.ar 1 CP4 -0.0169
14
+ 2 C1 -4.8670 34.6920 73.5100 C.ar 1 CP4 0.0680
15
+ 3 C2 -5.8140 35.7050 71.7150 C.2 1 CP4 -0.0391
16
+ 4 C3 -7.3100 34.8440 73.7970 C.ar 1 CP4 -0.0571
17
+ 5 N4 -3.9470 35.0350 72.5920 N.pl3 1 CP4 -0.2669
18
+ 6 C5 -4.7000 34.0420 74.7690 C.ar 1 CP4 -0.0398
19
+ 7 C6 -4.4840 35.6220 71.5460 C.2 1 CP4 0.1322
20
+ 8 C7 -7.1730 34.1980 75.0640 C.ar 1 CP4 0.0253
21
+ 9 C8 -5.8840 33.8020 75.5470 C.ar 1 CP4 -0.0600
22
+ 10 C9 -3.6730 36.1100 70.3930 C.2 1 CP4 0.2269
23
+ 11 CL10 -8.5880 33.8840 76.0230 Cl 1 CP4 -0.0811
24
+ 12 N11 -4.2650 36.7460 69.3280 N.am 1 CP4 -0.2827
25
+ 13 O12 -2.4520 35.9340 70.4660 O.2 1 CP4 -0.3841
26
+ 14 C13 -3.4750 37.3030 68.2180 C.3 1 CP4 0.0536
27
+ 15 C14 -3.6630 36.5930 66.8670 C.3 1 CP4 0.0678
28
+ 16 O15 -3.0110 35.3100 67.0030 O.3 1 CP4 -0.3755
29
+ 17 C16 -1.6740 35.2240 66.4440 C.3 1 CP4 0.0711
30
+ 18 C17 -1.4970 33.7590 65.9740 C.3 1 CP4 0.0711
31
+ 19 O18 -2.4980 33.4600 64.9830 O.3 1 CP4 -0.3755
32
+ 20 C19 -2.9110 32.0760 64.9520 C.3 1 CP4 0.0678
33
+ 21 C20 -2.2180 31.3660 63.7530 C.3 1 CP4 0.0536
34
+ 22 N21 -2.7510 31.7670 62.4360 N.am 1 CP4 -0.2827
35
+ 23 C22 -2.0580 32.5990 61.6040 C.2 1 CP4 0.2269
36
+ 24 C23 -2.5830 32.9810 60.2520 C.2 1 CP4 0.1322
37
+ 25 O24 -0.9590 33.0560 61.9080 O.2 1 CP4 -0.3841
38
+ 26 N25 -1.8460 33.6570 59.3900 N.pl3 1 CP4 -0.2669
39
+ 27 C26 -3.7930 32.7110 59.7020 C.2 1 CP4 -0.0391
40
+ 28 C27 -2.5020 33.8780 58.2300 C.ar 1 CP4 0.0680
41
+ 29 C28 -3.7850 33.3100 58.3180 C.ar 1 CP4 -0.0169
42
+ 30 C29 -2.0660 34.5620 57.0560 C.ar 1 CP4 -0.0398
43
+ 31 C30 -4.7110 33.3750 57.2460 C.ar 1 CP4 -0.0571
44
+ 32 C31 -2.9880 34.6370 55.9630 C.ar 1 CP4 -0.0600
45
+ 33 C32 -4.2950 34.0490 56.0560 C.ar 1 CP4 0.0253
46
+ 34 CL33 -5.3900 34.1520 54.7060 Cl 1 CP4 -0.0811
47
+ 35 H1 -6.5294 36.1441 71.0212 H 1 CP4 0.0400
48
+ 36 H2 -8.2810 35.1468 73.4220 H 1 CP4 0.0564
49
+ 37 H3 -2.9377 34.8582 72.6963 H 1 CP4 0.2262
50
+ 38 H4 -3.7207 33.7417 75.1239 H 1 CP4 0.0550
51
+ 39 H5 -5.8006 33.3150 76.5118 H 1 CP4 0.0556
52
+ 40 H6 -5.2610 36.8328 69.3067 H 1 CP4 0.1842
53
+ 41 H7 -2.4113 37.2408 68.4912 H 1 CP4 0.0542
54
+ 42 H8 -3.7601 38.3579 68.0918 H 1 CP4 0.0542
55
+ 43 H9 -3.1964 37.1762 66.0594 H 1 CP4 0.0580
56
+ 44 H10 -4.7330 36.4580 66.6507 H 1 CP4 0.0580
57
+ 45 H11 -0.9238 35.4724 67.2092 H 1 CP4 0.0583
58
+ 46 H12 -1.5714 35.9128 65.5926 H 1 CP4 0.0583
59
+ 47 H13 -1.6129 33.0800 66.8316 H 1 CP4 0.0583
60
+ 48 H14 -0.4957 33.6303 65.5371 H 1 CP4 0.0583
61
+ 49 H15 -4.0030 32.0198 64.8325 H 1 CP4 0.0580
62
+ 50 H16 -2.6190 31.5831 65.8910 H 1 CP4 0.0580
63
+ 51 H17 -2.3542 30.2804 63.8666 H 1 CP4 0.0542
64
+ 52 H18 -1.1448 31.6058 63.7807 H 1 CP4 0.0542
65
+ 53 H19 -3.6429 31.4203 62.1456 H 1 CP4 0.1842
66
+ 54 H20 -0.8856 33.9775 59.5794 H 1 CP4 0.2262
67
+ 55 H21 -4.6122 32.1667 60.1695 H 1 CP4 0.0400
68
+ 56 H22 -1.0790 35.0059 56.9942 H 1 CP4 0.0550
69
+ 57 H23 -5.6965 32.9306 57.3259 H 1 CP4 0.0564
70
+ 58 H24 -2.6950 35.1453 55.0515 H 1 CP4 0.0556
71
+ @<TRIPOS>BOND
72
+ 1 1 2 ar
73
+ 2 1 3 1
74
+ 3 1 4 ar
75
+ 4 2 5 1
76
+ 5 2 6 ar
77
+ 6 3 7 2
78
+ 7 4 8 ar
79
+ 8 5 7 1
80
+ 9 6 9 ar
81
+ 10 7 10 1
82
+ 11 8 9 ar
83
+ 12 8 11 1
84
+ 13 10 12 am
85
+ 14 10 13 2
86
+ 15 12 14 1
87
+ 16 14 15 1
88
+ 17 15 16 1
89
+ 18 16 17 1
90
+ 19 17 18 1
91
+ 20 18 19 1
92
+ 21 19 20 1
93
+ 22 20 21 1
94
+ 23 21 22 1
95
+ 24 22 23 am
96
+ 25 23 24 1
97
+ 26 23 25 2
98
+ 27 24 26 1
99
+ 28 24 27 2
100
+ 29 26 28 1
101
+ 30 27 29 1
102
+ 31 28 29 ar
103
+ 32 28 30 ar
104
+ 33 29 31 ar
105
+ 34 30 32 ar
106
+ 35 31 33 ar
107
+ 36 32 33 ar
108
+ 37 33 34 1
109
+ 38 3 35 1
110
+ 39 4 36 1
111
+ 40 5 37 1
112
+ 41 6 38 1
113
+ 42 9 39 1
114
+ 43 12 40 1
115
+ 44 14 41 1
116
+ 45 14 42 1
117
+ 46 15 43 1
118
+ 47 15 44 1
119
+ 48 17 45 1
120
+ 49 17 46 1
121
+ 50 18 47 1
122
+ 51 18 48 1
123
+ 52 20 49 1
124
+ 53 20 50 1
125
+ 54 21 51 1
126
+ 55 21 52 1
127
+ 56 22 53 1
128
+ 57 26 54 1
129
+ 58 27 55 1
130
+ 59 30 56 1
131
+ 60 31 57 1
132
+ 61 32 58 1
133
+ @<TRIPOS>SUBSTRUCTURE
134
+ 1 CP4 1
135
+
1em6/1em6_ligand.sdf ADDED
@@ -0,0 +1,121 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1em6_ligand
2
+ -I-interpret-
3
+
4
+ 56 59 0 0 0 0 0 0 0 0999 V2000
5
+ -6.1280 35.0740 73.0490 C 0 0 0 0 0
6
+ -4.8670 34.6920 73.5100 C 0 0 0 0 0
7
+ -5.8140 35.7050 71.7150 C 0 0 0 0 0
8
+ -7.3100 34.8440 73.7970 C 0 0 0 0 0
9
+ -3.9470 35.0350 72.5920 N 0 0 0 0 0
10
+ -4.7000 34.0420 74.7690 C 0 0 0 0 0
11
+ -4.4840 35.6220 71.5460 C 0 0 0 0 0
12
+ -7.1730 34.1980 75.0640 C 0 0 0 0 0
13
+ -5.8840 33.8020 75.5470 C 0 0 0 0 0
14
+ -3.6730 36.1100 70.3930 C 0 0 0 0 0
15
+ -8.5880 33.8840 76.0230 Cl 0 0 0 0 0
16
+ -4.2650 36.7460 69.3280 N 0 0 0 0 0
17
+ -2.4520 35.9340 70.4660 O 0 0 0 0 0
18
+ -3.4750 37.3030 68.2180 C 0 0 0 0 0
19
+ -3.6630 36.5930 66.8670 C 0 0 0 0 0
20
+ -3.0110 35.3100 67.0030 O 0 0 0 0 0
21
+ -1.6740 35.2240 66.4440 C 0 0 0 0 0
22
+ -1.4970 33.7590 65.9740 C 0 0 0 0 0
23
+ -2.4980 33.4600 64.9830 O 0 0 0 0 0
24
+ -2.9110 32.0760 64.9520 C 0 0 0 0 0
25
+ -2.2180 31.3660 63.7530 C 0 0 0 0 0
26
+ -2.7510 31.7670 62.4360 N 0 0 0 0 0
27
+ -2.0580 32.5990 61.6040 C 0 0 0 0 0
28
+ -2.5830 32.9810 60.2520 C 0 0 0 0 0
29
+ -0.9590 33.0560 61.9080 O 0 0 0 0 0
30
+ -1.8460 33.6570 59.3900 N 0 0 0 0 0
31
+ -3.7930 32.7110 59.7020 C 0 0 0 0 0
32
+ -2.5020 33.8780 58.2300 C 0 0 0 0 0
33
+ -3.7850 33.3100 58.3180 C 0 0 0 0 0
34
+ -2.0660 34.5620 57.0560 C 0 0 0 0 0
35
+ -4.7110 33.3750 57.2460 C 0 0 0 0 0
36
+ -2.9880 34.6370 55.9630 C 0 0 0 0 0
37
+ -4.2950 34.0490 56.0560 C 0 0 0 0 0
38
+ -5.3900 34.1520 54.7060 Cl 0 0 0 0 0
39
+ -6.5300 36.1445 71.0206 H 0 0 0 0 0
40
+ -8.2863 35.1484 73.4199 H 0 0 0 0 0
41
+ -3.7153 33.7400 75.1258 H 0 0 0 0 0
42
+ -5.8002 33.3123 76.5172 H 0 0 0 0 0
43
+ -5.2809 36.8345 69.3063 H 0 0 0 0 0
44
+ -2.4257 37.1893 68.4902 H 0 0 0 0 0
45
+ -3.8060 38.3325 68.0814 H 0 0 0 0 0
46
+ -3.2318 37.1726 66.0508 H 0 0 0 0 0
47
+ -4.7191 36.4775 66.6230 H 0 0 0 0 0
48
+ -0.9202 35.4936 67.1837 H 0 0 0 0 0
49
+ -1.5485 35.9209 65.6153 H 0 0 0 0 0
50
+ -1.6078 33.0847 66.8232 H 0 0 0 0 0
51
+ -0.5039 33.6285 65.5441 H 0 0 0 0 0
52
+ -3.9934 32.0183 64.8371 H 0 0 0 0 0
53
+ -2.6256 31.5867 65.8833 H 0 0 0 0 0
54
+ -2.3931 30.2958 63.8630 H 0 0 0 0 0
55
+ -1.1640 31.6429 63.7757 H 0 0 0 0 0
56
+ -3.6607 31.4133 62.1398 H 0 0 0 0 0
57
+ -4.6130 32.1662 60.1700 H 0 0 0 0 0
58
+ -1.0735 35.0083 56.9939 H 0 0 0 0 0
59
+ -5.7020 32.9282 57.3263 H 0 0 0 0 0
60
+ -2.6934 35.1481 55.0465 H 0 0 0 0 0
61
+ 1 2 4 0 0 0
62
+ 1 3 4 0 0 0
63
+ 1 4 4 0 0 0
64
+ 2 5 4 0 0 0
65
+ 2 6 4 0 0 0
66
+ 3 7 4 0 0 0
67
+ 4 8 4 0 0 0
68
+ 5 7 4 0 0 0
69
+ 6 9 4 0 0 0
70
+ 7 10 1 0 0 0
71
+ 8 9 4 0 0 0
72
+ 8 11 1 0 0 0
73
+ 10 12 1 0 0 0
74
+ 10 13 2 0 0 0
75
+ 12 14 1 0 0 0
76
+ 14 15 1 0 0 0
77
+ 15 16 1 0 0 0
78
+ 16 17 1 0 0 0
79
+ 17 18 1 0 0 0
80
+ 18 19 1 0 0 0
81
+ 19 20 1 0 0 0
82
+ 20 21 1 0 0 0
83
+ 21 22 1 0 0 0
84
+ 22 23 1 0 0 0
85
+ 23 24 1 0 0 0
86
+ 23 25 2 0 0 0
87
+ 24 26 4 0 0 0
88
+ 24 27 4 0 0 0
89
+ 26 28 4 0 0 0
90
+ 27 29 4 0 0 0
91
+ 28 29 4 0 0 0
92
+ 28 30 4 0 0 0
93
+ 29 31 4 0 0 0
94
+ 30 32 4 0 0 0
95
+ 31 33 4 0 0 0
96
+ 32 33 4 0 0 0
97
+ 33 34 1 0 0 0
98
+ 3 35 1 0 0 0
99
+ 4 36 1 0 0 0
100
+ 6 37 1 0 0 0
101
+ 9 38 1 0 0 0
102
+ 12 39 1 0 0 0
103
+ 14 40 1 0 0 0
104
+ 14 41 1 0 0 0
105
+ 15 42 1 0 0 0
106
+ 15 43 1 0 0 0
107
+ 17 44 1 0 0 0
108
+ 17 45 1 0 0 0
109
+ 18 46 1 0 0 0
110
+ 18 47 1 0 0 0
111
+ 20 48 1 0 0 0
112
+ 20 49 1 0 0 0
113
+ 21 50 1 0 0 0
114
+ 21 51 1 0 0 0
115
+ 22 52 1 0 0 0
116
+ 27 53 1 0 0 0
117
+ 30 54 1 0 0 0
118
+ 31 55 1 0 0 0
119
+ 32 56 1 0 0 0
120
+ M END
121
+ $$$$
1em6/1em6_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1em6/1em6_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1g85/1g85_ligand.mol2 ADDED
@@ -0,0 +1,69 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:49 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1g85_ligand
7
+ 27 26 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C1 -2.0130 -1.2270 3.9210 C.3 1 3OL -0.0629
14
+ 2 C2 -1.2750 0.0060 3.7440 C.3 1 3OL -0.0297
15
+ 3 C3 0.2220 0.1050 3.9100 C.3 1 3OL 0.0550
16
+ 4 O1 0.6870 1.3980 3.3500 O.3 1 3OL -0.3918
17
+ 5 C4 0.4690 0.0270 5.3980 C.3 1 3OL -0.0269
18
+ 6 C5 0.8580 -1.3840 5.8140 C.3 1 3OL -0.0507
19
+ 7 C6 1.2060 -1.3970 7.3140 C.3 1 3OL -0.0532
20
+ 8 C7 0.0140 -1.7440 8.1800 C.3 1 3OL -0.0559
21
+ 9 C8 0.2660 -3.0670 8.9470 C.3 1 3OL -0.0653
22
+ 10 H1 -3.0832 -1.0420 3.7464 H 1 3OL 0.0231
23
+ 11 H2 -1.8675 -1.5975 4.9464 H 1 3OL 0.0231
24
+ 12 H3 -1.6491 -1.9782 3.2046 H 1 3OL 0.0231
25
+ 13 H4 -1.7061 0.7214 4.4598 H 1 3OL 0.0287
26
+ 14 H5 -1.4877 0.3406 2.7180 H 1 3OL 0.0287
27
+ 15 H6 0.7283 -0.7244 3.3946 H 1 3OL 0.0593
28
+ 16 H7 1.6291 1.4655 3.4520 H 1 3OL 0.2098
29
+ 17 H8 -0.4482 0.3188 5.9305 H 1 3OL 0.0290
30
+ 18 H9 1.2829 0.7175 5.6640 H 1 3OL 0.0290
31
+ 19 H10 1.7322 -1.7106 5.2316 H 1 3OL 0.0266
32
+ 20 H11 0.0165 -2.0671 5.6265 H 1 3OL 0.0266
33
+ 21 H12 1.5723 -0.4001 7.6003 H 1 3OL 0.0265
34
+ 22 H13 1.9968 -2.1418 7.4867 H 1 3OL 0.0265
35
+ 23 H14 -0.8751 -1.8590 7.5426 H 1 3OL 0.0263
36
+ 24 H15 -0.1559 -0.9331 8.9035 H 1 3OL 0.0263
37
+ 25 H16 -0.6097 -3.3022 9.5698 H 1 3OL 0.0230
38
+ 26 H17 1.1528 -2.9559 9.5883 H 1 3OL 0.0230
39
+ 27 H18 0.4336 -3.8819 8.2274 H 1 3OL 0.0230
40
+ @<TRIPOS>BOND
41
+ 1 1 2 1
42
+ 2 2 3 1
43
+ 3 3 4 1
44
+ 4 3 5 1
45
+ 5 5 6 1
46
+ 6 6 7 1
47
+ 7 7 8 1
48
+ 8 8 9 1
49
+ 9 1 10 1
50
+ 10 1 11 1
51
+ 11 1 12 1
52
+ 12 2 13 1
53
+ 13 2 14 1
54
+ 14 3 15 1
55
+ 15 4 16 1
56
+ 16 5 17 1
57
+ 17 5 18 1
58
+ 18 6 19 1
59
+ 19 6 20 1
60
+ 20 7 21 1
61
+ 21 7 22 1
62
+ 22 8 23 1
63
+ 23 8 24 1
64
+ 24 9 25 1
65
+ 25 9 26 1
66
+ 26 9 27 1
67
+ @<TRIPOS>SUBSTRUCTURE
68
+ 1 3OL 1
69
+
1g85/1g85_ligand.sdf ADDED
@@ -0,0 +1,59 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1g85_ligand
2
+ -I-interpret-
3
+
4
+ 27 26 0 0 0 0 0 0 0 0999 V2000
5
+ -2.0130 -1.2270 3.9210 C 0 0 0 0 0
6
+ -1.2750 0.0060 3.7440 C 0 0 0 0 0
7
+ 0.2220 0.1050 3.9100 C 0 0 0 0 0
8
+ 0.6870 1.3980 3.3500 O 0 0 0 0 0
9
+ 0.4690 0.0270 5.3980 C 0 0 0 0 0
10
+ 0.8580 -1.3840 5.8140 C 0 0 0 0 0
11
+ 1.2060 -1.3970 7.3140 C 0 0 0 0 0
12
+ 0.0140 -1.7440 8.1800 C 0 0 0 0 0
13
+ 0.2660 -3.0670 8.9470 C 0 0 0 0 0
14
+ -1.6515 -1.9705 3.2106 H 0 0 0 0 0
15
+ -1.8679 -1.5931 4.9374 H 0 0 0 0 0
16
+ -3.0732 -1.0424 3.7478 H 0 0 0 0 0
17
+ -1.6543 0.6376 4.5473 H 0 0 0 0 0
18
+ -1.4212 0.2311 2.6876 H 0 0 0 0 0
19
+ 0.7616 -0.6854 3.3883 H 0 0 0 0 0
20
+ 0.5164 1.4162 2.4055 H 0 0 0 0 0
21
+ -0.4471 0.3048 5.9192 H 0 0 0 0 0
22
+ 1.2847 0.7037 5.6526 H 0 0 0 0 0
23
+ 1.7238 -1.7082 5.2365 H 0 0 0 0 0
24
+ 0.0246 -2.0613 5.6277 H 0 0 0 0 0
25
+ 1.5443 -0.3984 7.5904 H 0 0 0 0 0
26
+ 1.9724 -2.1550 7.4758 H 0 0 0 0 0
27
+ -0.8624 -1.8655 7.5434 H 0 0 0 0 0
28
+ -0.1452 -0.9420 8.9008 H 0 0 0 0 0
29
+ 0.4320 -3.8736 8.2328 H 0 0 0 0 0
30
+ 1.1449 -2.9556 9.5820 H 0 0 0 0 0
31
+ -0.6023 -3.2990 9.5637 H 0 0 0 0 0
32
+ 1 2 1 0 0 0
33
+ 2 3 1 0 0 0
34
+ 3 4 1 0 0 0
35
+ 3 5 1 0 0 0
36
+ 5 6 1 0 0 0
37
+ 6 7 1 0 0 0
38
+ 7 8 1 0 0 0
39
+ 8 9 1 0 0 0
40
+ 1 10 1 0 0 0
41
+ 1 11 1 0 0 0
42
+ 1 12 1 0 0 0
43
+ 2 13 1 0 0 0
44
+ 2 14 1 0 0 0
45
+ 3 15 1 0 0 0
46
+ 4 16 1 0 0 0
47
+ 5 17 1 0 0 0
48
+ 5 18 1 0 0 0
49
+ 6 19 1 0 0 0
50
+ 6 20 1 0 0 0
51
+ 7 21 1 0 0 0
52
+ 7 22 1 0 0 0
53
+ 8 23 1 0 0 0
54
+ 8 24 1 0 0 0
55
+ 9 25 1 0 0 0
56
+ 9 26 1 0 0 0
57
+ 9 27 1 0 0 0
58
+ M END
59
+ $$$$
1g85/1g85_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1g85/1g85_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1h3a/1h3a_ligand.mol2 ADDED
@@ -0,0 +1,122 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:50 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1h3a_ligand
7
+ 52 54 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C3A 63.1990 69.3230 57.6810 C.2 1 R04 -0.1125
14
+ 2 C2A 62.3130 69.2220 58.6800 C.2 1 R04 -0.0447
15
+ 3 C1A 61.7620 70.4210 59.4260 C.3 1 R04 -0.0031
16
+ 4 N1 62.8440 71.3720 59.8170 N.4 1 R04 0.2555
17
+ 5 C1B 63.6060 70.9250 61.0380 C.3 1 R04 -0.0135
18
+ 6 C2B 62.8450 70.9730 62.3540 C.2 1 R04 -0.0518
19
+ 7 C3B 62.7170 69.9070 63.1650 C.2 1 R04 -0.0639
20
+ 8 C4B 61.9670 69.9620 64.4810 C.3 1 R04 0.0872
21
+ 9 O 62.5860 69.0430 65.4160 O.3 1 R04 -0.3107
22
+ 10 C6C 63.5370 69.5900 66.3400 C.ar 1 R04 0.1208
23
+ 11 C7C 63.9490 70.9650 66.2660 C.ar 1 R04 -0.0075
24
+ 12 C7P 64.8930 71.4390 67.2010 C.ar 1 R04 0.0804
25
+ 13 N1C 65.4050 72.6690 67.3070 N.pl3 1 R04 -0.2075
26
+ 14 N2C 66.1870 72.6720 68.2410 N.2 1 R04 -0.2009
27
+ 15 C3C 66.2800 71.4860 68.8450 C.2 1 R04 0.0588
28
+ 16 C3P 65.4230 70.5940 68.1900 C.ar 1 R04 0.0076
29
+ 17 C4C 65.0300 69.2140 68.2950 C.ar 1 R04 -0.0350
30
+ 18 C5C 64.0740 68.7300 67.3470 C.ar 1 R04 0.1519
31
+ 19 C1D 67.2010 71.2800 70.0320 C.ar 1 R04 -0.0084
32
+ 20 C6D 67.6540 69.9860 70.4470 C.ar 1 R04 -0.0526
33
+ 21 C5D 68.5200 69.8510 71.5710 C.ar 1 R04 -0.0532
34
+ 22 C4D 68.9380 71.0120 72.2840 C.ar 1 R04 0.0115
35
+ 23 C3D 68.4880 72.2990 71.8690 C.ar 1 R04 -0.0532
36
+ 24 C2D 67.6280 72.4250 70.7540 C.ar 1 R04 -0.0526
37
+ 25 F 63.6830 67.4580 67.4060 F 1 R04 -0.1958
38
+ 26 BR27 70.0640 70.8500 73.7520 Br 1 R04 -0.0509
39
+ 27 C1E 65.1030 73.8280 66.4620 C.3 1 R04 0.0548
40
+ 28 C1F 62.3000 72.7590 59.9970 C.3 1 R04 -0.0403
41
+ 29 H1 63.5603 68.4257 57.1808 H 1 R04 0.0292
42
+ 30 H2 63.5582 70.3025 57.3687 H 1 R04 0.0292
43
+ 31 H3 61.9715 68.2296 58.9708 H 1 R04 0.0725
44
+ 32 H4 61.2493 70.0712 60.3342 H 1 R04 0.0997
45
+ 33 H5 61.0438 70.9449 58.7782 H 1 R04 0.0997
46
+ 34 H6 63.5013 71.4024 59.0534 H 1 R04 0.2060
47
+ 35 H7 64.4910 71.5707 61.1374 H 1 R04 0.0939
48
+ 36 H8 63.9269 69.8859 60.8727 H 1 R04 0.0939
49
+ 37 H9 62.3829 71.9125 62.6534 H 1 R04 0.0503
50
+ 38 H10 63.1716 68.9646 62.8630 H 1 R04 0.0478
51
+ 39 H11 60.9179 69.6732 64.3199 H 1 R04 0.0738
52
+ 40 H12 62.0080 70.9837 64.8864 H 1 R04 0.0738
53
+ 41 H13 63.5427 71.6242 65.5074 H 1 R04 0.0454
54
+ 42 H14 65.4416 68.5672 69.0613 H 1 R04 0.0553
55
+ 43 H15 67.3362 69.1040 69.9028 H 1 R04 0.0619
56
+ 44 H16 68.8592 68.8696 71.8821 H 1 R04 0.0640
57
+ 45 H17 68.8058 73.1833 72.4095 H 1 R04 0.0640
58
+ 46 H18 67.2905 73.4082 70.4467 H 1 R04 0.0619
59
+ 47 H19 65.6870 74.6945 66.8057 H 1 R04 0.0579
60
+ 48 H20 64.0297 74.0600 66.5276 H 1 R04 0.0579
61
+ 49 H21 65.3656 73.5994 65.4186 H 1 R04 0.0579
62
+ 50 H22 61.7502 73.0574 59.0922 H 1 R04 0.0778
63
+ 51 H23 63.1307 73.4593 60.1689 H 1 R04 0.0778
64
+ 52 H24 61.6203 72.7770 60.8617 H 1 R04 0.0778
65
+ @<TRIPOS>BOND
66
+ 1 1 2 2
67
+ 2 2 3 1
68
+ 3 3 4 1
69
+ 4 4 5 1
70
+ 5 4 28 1
71
+ 6 5 6 1
72
+ 7 6 7 2
73
+ 8 7 8 1
74
+ 9 8 9 1
75
+ 10 9 10 1
76
+ 11 10 11 ar
77
+ 12 10 18 ar
78
+ 13 11 12 ar
79
+ 14 12 13 1
80
+ 15 12 16 ar
81
+ 16 13 14 1
82
+ 17 13 27 1
83
+ 18 14 15 2
84
+ 19 15 16 1
85
+ 20 15 19 1
86
+ 21 16 17 ar
87
+ 22 17 18 ar
88
+ 23 18 25 1
89
+ 24 19 20 ar
90
+ 25 19 24 ar
91
+ 26 20 21 ar
92
+ 27 21 22 ar
93
+ 28 22 23 ar
94
+ 29 22 26 1
95
+ 30 23 24 ar
96
+ 31 1 29 1
97
+ 32 1 30 1
98
+ 33 2 31 1
99
+ 34 3 32 1
100
+ 35 3 33 1
101
+ 36 4 34 1
102
+ 37 5 35 1
103
+ 38 5 36 1
104
+ 39 6 37 1
105
+ 40 7 38 1
106
+ 41 8 39 1
107
+ 42 8 40 1
108
+ 43 11 41 1
109
+ 44 17 42 1
110
+ 45 20 43 1
111
+ 46 21 44 1
112
+ 47 23 45 1
113
+ 48 24 46 1
114
+ 49 27 47 1
115
+ 50 27 48 1
116
+ 51 27 49 1
117
+ 52 28 50 1
118
+ 53 28 51 1
119
+ 54 28 52 1
120
+ @<TRIPOS>SUBSTRUCTURE
121
+ 1 R04 1
122
+
1h3a/1h3a_ligand.sdf ADDED
@@ -0,0 +1,112 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1h3a_ligand
2
+ -I-interpret-
3
+
4
+ 52 54 0 0 0 0 0 0 0 0999 V2000
5
+ 63.1990 69.3230 57.6810 C 0 0 0 0 0
6
+ 62.3130 69.2220 58.6800 C 0 0 0 0 0
7
+ 61.7620 70.4210 59.4260 C 0 0 0 0 0
8
+ 62.8440 71.3720 59.8170 N 0 3 0 0 0
9
+ 63.6060 70.9250 61.0380 C 0 0 0 0 0
10
+ 62.8450 70.9730 62.3540 C 0 0 0 0 0
11
+ 62.7170 69.9070 63.1650 C 0 0 0 0 0
12
+ 61.9670 69.9620 64.4810 C 0 0 0 0 0
13
+ 62.5860 69.0430 65.4160 O 0 0 0 0 0
14
+ 63.5370 69.5900 66.3400 C 0 0 0 0 0
15
+ 63.9490 70.9650 66.2660 C 0 0 0 0 0
16
+ 64.8930 71.4390 67.2010 C 0 0 0 0 0
17
+ 65.4050 72.6690 67.3070 N 0 0 0 0 0
18
+ 66.1870 72.6720 68.2410 N 0 0 0 0 0
19
+ 66.2800 71.4860 68.8450 C 0 0 0 0 0
20
+ 65.4230 70.5940 68.1900 C 0 0 0 0 0
21
+ 65.0300 69.2140 68.2950 C 0 0 0 0 0
22
+ 64.0740 68.7300 67.3470 C 0 0 0 0 0
23
+ 67.2010 71.2800 70.0320 C 0 0 0 0 0
24
+ 67.6540 69.9860 70.4470 C 0 0 0 0 0
25
+ 68.5200 69.8510 71.5710 C 0 0 0 0 0
26
+ 68.9380 71.0120 72.2840 C 0 0 0 0 0
27
+ 68.4880 72.2990 71.8690 C 0 0 0 0 0
28
+ 67.6280 72.4250 70.7540 C 0 0 0 0 0
29
+ 63.6830 67.4580 67.4060 F 0 0 0 0 0
30
+ 70.0640 70.8500 73.7520 Br 0 0 0 0 0
31
+ 65.1030 73.8280 66.4620 C 0 0 0 0 0
32
+ 62.3000 72.7590 59.9970 C 0 0 0 0 0
33
+ 63.5585 70.3034 57.3685 H 0 0 0 0 0
34
+ 63.5606 68.4248 57.1804 H 0 0 0 0 0
35
+ 61.9712 68.2287 58.9710 H 0 0 0 0 0
36
+ 61.2721 70.0662 60.3327 H 0 0 0 0 0
37
+ 61.0656 70.9435 58.7702 H 0 0 0 0 0
38
+ 63.5138 71.3829 59.0478 H 0 0 0 0 0
39
+ 64.4446 71.6132 61.1442 H 0 0 0 0 0
40
+ 63.8639 69.8791 60.8717 H 0 0 0 0 0
41
+ 62.3824 71.9134 62.6537 H 0 0 0 0 0
42
+ 63.1720 68.9638 62.8627 H 0 0 0 0 0
43
+ 60.9261 69.6798 64.3229 H 0 0 0 0 0
44
+ 62.0032 70.9747 64.8826 H 0 0 0 0 0
45
+ 63.5405 71.6278 65.5032 H 0 0 0 0 0
46
+ 65.4438 68.5636 69.0656 H 0 0 0 0 0
47
+ 67.3345 69.0991 69.8998 H 0 0 0 0 0
48
+ 68.8611 68.8641 71.8839 H 0 0 0 0 0
49
+ 68.8076 73.1882 72.4125 H 0 0 0 0 0
50
+ 67.2887 73.4137 70.4450 H 0 0 0 0 0
51
+ 65.3636 73.6002 65.4284 H 0 0 0 0 0
52
+ 64.0393 74.0568 66.5279 H 0 0 0 0 0
53
+ 65.6823 74.6858 66.8035 H 0 0 0 0 0
54
+ 61.6268 72.7755 60.8541 H 0 0 0 0 0
55
+ 63.1241 73.4518 60.1673 H 0 0 0 0 0
56
+ 61.7554 73.0536 59.0999 H 0 0 0 0 0
57
+ 1 2 2 0 0 0
58
+ 2 3 1 0 0 0
59
+ 3 4 1 0 0 0
60
+ 4 5 1 0 0 0
61
+ 4 28 1 0 0 0
62
+ 5 6 1 0 0 0
63
+ 6 7 2 0 0 0
64
+ 7 8 1 0 0 0
65
+ 8 9 1 0 0 0
66
+ 9 10 1 0 0 0
67
+ 10 11 4 0 0 0
68
+ 10 18 4 0 0 0
69
+ 11 12 4 0 0 0
70
+ 12 13 4 0 0 0
71
+ 12 16 4 0 0 0
72
+ 13 14 4 0 0 0
73
+ 13 27 1 0 0 0
74
+ 14 15 4 0 0 0
75
+ 15 16 4 0 0 0
76
+ 15 19 1 0 0 0
77
+ 16 17 4 0 0 0
78
+ 17 18 4 0 0 0
79
+ 18 25 1 0 0 0
80
+ 19 20 4 0 0 0
81
+ 19 24 4 0 0 0
82
+ 20 21 4 0 0 0
83
+ 21 22 4 0 0 0
84
+ 22 23 4 0 0 0
85
+ 22 26 1 0 0 0
86
+ 23 24 4 0 0 0
87
+ 1 29 1 0 0 0
88
+ 1 30 1 0 0 0
89
+ 2 31 1 0 0 0
90
+ 3 32 1 0 0 0
91
+ 3 33 1 0 0 0
92
+ 4 34 1 0 0 0
93
+ 5 35 1 0 0 0
94
+ 5 36 1 0 0 0
95
+ 6 37 1 0 0 0
96
+ 7 38 1 0 0 0
97
+ 8 39 1 0 0 0
98
+ 8 40 1 0 0 0
99
+ 11 41 1 0 0 0
100
+ 17 42 1 0 0 0
101
+ 20 43 1 0 0 0
102
+ 21 44 1 0 0 0
103
+ 23 45 1 0 0 0
104
+ 24 46 1 0 0 0
105
+ 27 47 1 0 0 0
106
+ 27 48 1 0 0 0
107
+ 27 49 1 0 0 0
108
+ 28 50 1 0 0 0
109
+ 28 51 1 0 0 0
110
+ 28 52 1 0 0 0
111
+ M END
112
+ $$$$
1h3a/1h3a_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1h3a/1h3a_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1nde/1nde_ligand.mol2 ADDED
@@ -0,0 +1,145 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:49 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1nde_ligand
7
+ 63 66 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C1 110.7370 5.5320 -105.3590 C.ar 1 MON 0.1823
14
+ 2 N2 110.9210 4.5570 -104.4530 N.pl3 1 MON -0.2635
15
+ 3 N3 109.6060 6.2620 -105.4990 N.ar 1 MON -0.2274
16
+ 4 N4 111.6410 5.9560 -106.2990 N.ar 1 MON -0.2351
17
+ 5 C5 112.1510 3.7920 -104.3130 C.3 1 MON 0.0757
18
+ 6 C6 109.9180 4.1440 -103.4700 C.3 1 MON 0.0757
19
+ 7 C7 109.3710 7.2530 -106.3860 C.ar 1 MON 0.1796
20
+ 8 C8 111.4330 6.9410 -107.2020 C.ar 1 MON 0.1457
21
+ 9 C9 112.1770 2.3680 -103.6560 C.3 1 MON -0.0120
22
+ 10 C10 109.8560 2.6970 -102.9320 C.3 1 MON -0.0120
23
+ 11 N11 110.3030 7.5170 -107.1710 N.ar 1 MON -0.2352
24
+ 12 N12 108.3340 8.0500 -106.6270 N.pl3 1 MON -0.2857
25
+ 13 S13 112.2390 7.7050 -108.4440 S.3 1 MON -0.0545
26
+ 14 N14 111.1930 2.2550 -102.5700 N.4 1 MON 0.2299
27
+ 15 C15 107.0840 8.1290 -106.0060 C.3 1 MON 0.0408
28
+ 16 C16 113.6520 7.9070 -109.4800 C.3 1 MON 0.0168
29
+ 17 C17 106.3950 9.3140 -106.7320 C.3 1 MON -0.0033
30
+ 18 C18 112.5460 8.6530 -110.2420 C.3 1 MON -0.0312
31
+ 19 C19 105.0900 9.5030 -106.1080 C.ar 1 MON -0.0517
32
+ 20 C20 112.5190 9.4020 -111.5480 C.3 1 MON -0.0180
33
+ 21 C21 103.9240 9.4400 -106.8730 C.ar 1 MON -0.0687
34
+ 22 C22 105.0330 9.7310 -104.7160 C.ar 1 MON -0.0687
35
+ 23 C23 110.9910 9.8030 -111.5100 C.ar 1 MON -0.0427
36
+ 24 C24 102.6810 9.6030 -106.2350 C.ar 1 MON -0.0398
37
+ 25 C25 103.8050 9.8910 -104.0920 C.ar 1 MON -0.0398
38
+ 26 C26 110.5360 11.1320 -111.7190 C.ar 1 MON -0.0597
39
+ 27 C27 109.9960 8.7960 -111.2300 C.ar 1 MON -0.0597
40
+ 28 C28 102.6240 9.8210 -104.8370 C.ar 1 MON 0.0805
41
+ 29 C29 109.1400 11.4420 -111.6570 C.ar 1 MON -0.0546
42
+ 30 C30 108.6200 9.1160 -111.1700 C.ar 1 MON -0.0546
43
+ 31 O31 101.4320 9.9610 -104.2060 O.3 1 MON -0.3376
44
+ 32 C32 108.1900 10.4320 -111.3820 C.ar 1 MON 0.0330
45
+ 33 CL33 106.5190 10.8070 -111.3060 Cl 1 MON -0.0771
46
+ 34 H1 112.8356 4.4165 -103.7202 H 1 MON 0.0585
47
+ 35 H2 112.5538 3.6690 -105.3292 H 1 MON 0.0585
48
+ 36 H3 108.9372 4.3472 -103.9247 H 1 MON 0.0585
49
+ 37 H4 110.0577 4.7940 -102.5937 H 1 MON 0.0585
50
+ 38 H5 113.1814 2.1812 -103.2484 H 1 MON 0.0835
51
+ 39 H6 111.9477 1.6158 -104.4251 H 1 MON 0.0835
52
+ 40 H7 109.4491 2.0341 -103.7098 H 1 MON 0.0835
53
+ 41 H8 109.2064 2.6635 -102.0449 H 1 MON 0.0835
54
+ 42 H9 108.4749 8.7188 -107.3976 H 1 MON 0.1898
55
+ 43 H10 111.5120 2.8141 -101.7943 H 1 MON 0.2015
56
+ 44 H11 111.1415 1.2884 -102.2888 H 1 MON 0.2015
57
+ 45 H12 107.1911 8.3351 -104.9308 H 1 MON 0.0549
58
+ 46 H13 106.5155 7.1978 -106.1460 H 1 MON 0.0549
59
+ 47 H14 114.0571 6.9998 -109.9521 H 1 MON 0.0413
60
+ 48 H15 114.4787 8.5137 -109.0820 H 1 MON 0.0413
61
+ 49 H16 106.2717 9.0812 -107.8000 H 1 MON 0.0425
62
+ 50 H17 107.0003 10.2260 -106.6230 H 1 MON 0.0425
63
+ 51 H18 112.1996 9.4019 -109.5146 H 1 MON 0.0297
64
+ 52 H19 111.7698 7.8852 -110.3756 H 1 MON 0.0297
65
+ 53 H20 112.7640 8.7595 -112.4065 H 1 MON 0.0427
66
+ 54 H21 113.1840 10.2782 -111.5442 H 1 MON 0.0427
67
+ 55 H22 103.9757 9.2681 -107.9420 H 1 MON 0.0530
68
+ 56 H23 105.9474 9.7809 -104.1360 H 1 MON 0.0530
69
+ 57 H24 101.7657 9.5617 -106.8142 H 1 MON 0.0525
70
+ 58 H25 103.7606 10.0708 -103.0239 H 1 MON 0.0525
71
+ 59 H26 111.2522 11.9186 -111.9273 H 1 MON 0.0557
72
+ 60 H27 110.3102 7.7722 -111.0621 H 1 MON 0.0557
73
+ 61 H28 108.8082 12.4606 -111.8224 H 1 MON 0.0606
74
+ 62 H29 107.8943 8.3389 -110.9589 H 1 MON 0.0606
75
+ 63 H30 101.3393 9.2786 -103.5516 H 1 MON 0.2458
76
+ @<TRIPOS>BOND
77
+ 1 1 2 1
78
+ 2 1 3 ar
79
+ 3 4 1 ar
80
+ 4 2 5 1
81
+ 5 2 6 1
82
+ 6 7 3 ar
83
+ 7 8 4 ar
84
+ 8 5 9 1
85
+ 9 6 10 1
86
+ 10 11 7 ar
87
+ 11 7 12 1
88
+ 12 8 11 ar
89
+ 13 13 8 1
90
+ 14 9 14 1
91
+ 15 10 14 1
92
+ 16 12 15 1
93
+ 17 16 13 1
94
+ 18 5 34 1
95
+ 19 15 17 1
96
+ 20 16 18 1
97
+ 21 17 19 1
98
+ 22 18 20 1
99
+ 23 19 21 ar
100
+ 24 19 22 ar
101
+ 25 20 23 1
102
+ 26 21 24 ar
103
+ 27 22 25 ar
104
+ 28 23 26 ar
105
+ 29 23 27 ar
106
+ 30 24 28 ar
107
+ 31 25 28 ar
108
+ 32 26 29 ar
109
+ 33 27 30 ar
110
+ 34 28 31 1
111
+ 35 29 32 ar
112
+ 36 30 32 ar
113
+ 37 32 33 1
114
+ 38 5 35 1
115
+ 39 6 36 1
116
+ 40 6 37 1
117
+ 41 9 38 1
118
+ 42 9 39 1
119
+ 43 10 40 1
120
+ 44 10 41 1
121
+ 45 12 42 1
122
+ 46 14 43 1
123
+ 47 14 44 1
124
+ 48 15 45 1
125
+ 49 15 46 1
126
+ 50 16 47 1
127
+ 51 16 48 1
128
+ 52 17 49 1
129
+ 53 17 50 1
130
+ 54 18 51 1
131
+ 55 18 52 1
132
+ 56 20 53 1
133
+ 57 20 54 1
134
+ 58 21 55 1
135
+ 59 22 56 1
136
+ 60 24 57 1
137
+ 61 25 58 1
138
+ 62 26 59 1
139
+ 63 27 60 1
140
+ 64 29 61 1
141
+ 65 30 62 1
142
+ 66 31 63 1
143
+ @<TRIPOS>SUBSTRUCTURE
144
+ 1 MON 1
145
+
1nde/1nde_ligand.sdf ADDED
@@ -0,0 +1,135 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1nde_ligand
2
+ -I-interpret-
3
+
4
+ 63 66 0 0 0 0 0 0 0 0999 V2000
5
+ 110.7370 5.5320 -105.3590 C 0 0 0 0 0
6
+ 110.9210 4.5570 -104.4530 N 0 0 0 0 0
7
+ 109.6060 6.2620 -105.4990 N 0 0 0 0 0
8
+ 111.6410 5.9560 -106.2990 N 0 0 0 0 0
9
+ 112.1510 3.7920 -104.3130 C 0 0 0 0 0
10
+ 109.9180 4.1440 -103.4700 C 0 0 0 0 0
11
+ 109.3710 7.2530 -106.3860 C 0 0 0 0 0
12
+ 111.4330 6.9410 -107.2020 C 0 0 0 0 0
13
+ 112.1770 2.3680 -103.6560 C 0 0 0 0 0
14
+ 109.8560 2.6970 -102.9320 C 0 0 0 0 0
15
+ 110.3030 7.5170 -107.1710 N 0 0 0 0 0
16
+ 108.3340 8.0500 -106.6270 N 0 0 0 0 0
17
+ 112.2390 7.7050 -108.4440 S 0 0 0 0 0
18
+ 111.1930 2.2550 -102.5700 N 0 3 0 0 0
19
+ 107.0840 8.1290 -106.0060 C 0 0 0 0 0
20
+ 113.6520 7.9070 -109.4800 C 0 0 0 0 0
21
+ 106.3950 9.3140 -106.7320 C 0 0 0 0 0
22
+ 112.5460 8.6530 -110.2420 C 0 0 0 0 0
23
+ 105.0900 9.5030 -106.1080 C 0 0 0 0 0
24
+ 112.5190 9.4020 -111.5480 C 0 0 0 0 0
25
+ 103.9240 9.4400 -106.8730 C 0 0 0 0 0
26
+ 105.0330 9.7310 -104.7160 C 0 0 0 0 0
27
+ 110.9910 9.8030 -111.5100 C 0 0 0 0 0
28
+ 102.6810 9.6030 -106.2350 C 0 0 0 0 0
29
+ 103.8050 9.8910 -104.0920 C 0 0 0 0 0
30
+ 110.5360 11.1320 -111.7190 C 0 0 0 0 0
31
+ 109.9960 8.7960 -111.2300 C 0 0 0 0 0
32
+ 102.6240 9.8210 -104.8370 C 0 0 0 0 0
33
+ 109.1400 11.4420 -111.6570 C 0 0 0 0 0
34
+ 108.6200 9.1160 -111.1700 C 0 0 0 0 0
35
+ 101.4320 9.9610 -104.2060 O 0 0 0 0 0
36
+ 108.1900 10.4320 -111.3820 C 0 0 0 0 0
37
+ 106.5190 10.8070 -111.3060 Cl 0 0 0 0 0
38
+ 112.7522 4.3972 -103.6345 H 0 0 0 0 0
39
+ 112.4530 3.6034 -105.3432 H 0 0 0 0 0
40
+ 108.9726 4.2638 -103.9992 H 0 0 0 0 0
41
+ 110.1603 4.7375 -102.5884 H 0 0 0 0 0
42
+ 113.1701 2.1989 -103.2398 H 0 0 0 0 0
43
+ 111.9317 1.6313 -104.4210 H 0 0 0 0 0
44
+ 109.4533 2.0403 -103.7031 H 0 0 0 0 0
45
+ 109.2127 2.6642 -102.0527 H 0 0 0 0 0
46
+ 108.4736 8.7123 -107.3901 H 0 0 0 0 0
47
+ 111.5132 2.8541 -101.8091 H 0 0 0 0 0
48
+ 111.1279 1.2674 -102.3233 H 0 0 0 0 0
49
+ 107.1606 8.2852 -104.9300 H 0 0 0 0 0
50
+ 106.5170 7.2017 -106.0877 H 0 0 0 0 0
51
+ 114.3222 7.1347 -109.8575 H 0 0 0 0 0
52
+ 114.6397 8.2749 -109.2022 H 0 0 0 0 0
53
+ 106.2845 9.1005 -107.7952 H 0 0 0 0 0
54
+ 106.9964 10.2189 -106.6452 H 0 0 0 0 0
55
+ 112.4028 9.4912 -109.5601 H 0 0 0 0 0
56
+ 111.9240 7.8018 -110.5191 H 0 0 0 0 0
57
+ 112.8453 8.8443 -112.4259 H 0 0 0 0 0
58
+ 113.2272 10.2253 -111.6417 H 0 0 0 0 0
59
+ 103.9759 9.2672 -107.9480 H 0 0 0 0 0
60
+ 105.9525 9.7812 -104.1328 H 0 0 0 0 0
61
+ 101.7606 9.5615 -106.8174 H 0 0 0 0 0
62
+ 103.7604 10.0718 -103.0180 H 0 0 0 0 0
63
+ 111.2562 11.9229 -111.9285 H 0 0 0 0 0
64
+ 110.3120 7.7666 -111.0611 H 0 0 0 0 0
65
+ 108.8064 12.4663 -111.8234 H 0 0 0 0 0
66
+ 107.8903 8.3346 -110.9577 H 0 0 0 0 0
67
+ 101.5821 10.1005 -103.2681 H 0 0 0 0 0
68
+ 1 2 1 0 0 0
69
+ 1 3 4 0 0 0
70
+ 4 1 4 0 0 0
71
+ 2 5 1 0 0 0
72
+ 2 6 1 0 0 0
73
+ 7 3 4 0 0 0
74
+ 8 4 4 0 0 0
75
+ 5 9 1 0 0 0
76
+ 6 10 1 0 0 0
77
+ 11 7 4 0 0 0
78
+ 7 12 1 0 0 0
79
+ 8 11 4 0 0 0
80
+ 13 8 1 0 0 0
81
+ 9 14 1 0 0 0
82
+ 10 14 1 0 0 0
83
+ 12 15 1 0 0 0
84
+ 16 13 1 0 0 0
85
+ 15 17 1 0 0 0
86
+ 16 18 1 0 0 0
87
+ 17 19 1 0 0 0
88
+ 18 20 1 0 0 0
89
+ 19 21 4 0 0 0
90
+ 19 22 4 0 0 0
91
+ 20 23 1 0 0 0
92
+ 21 24 4 0 0 0
93
+ 22 25 4 0 0 0
94
+ 23 26 4 0 0 0
95
+ 23 27 4 0 0 0
96
+ 24 28 4 0 0 0
97
+ 25 28 4 0 0 0
98
+ 26 29 4 0 0 0
99
+ 27 30 4 0 0 0
100
+ 28 31 1 0 0 0
101
+ 29 32 4 0 0 0
102
+ 30 32 4 0 0 0
103
+ 32 33 1 0 0 0
104
+ 5 34 1 0 0 0
105
+ 5 35 1 0 0 0
106
+ 6 36 1 0 0 0
107
+ 6 37 1 0 0 0
108
+ 9 38 1 0 0 0
109
+ 9 39 1 0 0 0
110
+ 10 40 1 0 0 0
111
+ 10 41 1 0 0 0
112
+ 12 42 1 0 0 0
113
+ 14 43 1 0 0 0
114
+ 14 44 1 0 0 0
115
+ 15 45 1 0 0 0
116
+ 15 46 1 0 0 0
117
+ 16 47 1 0 0 0
118
+ 16 48 1 0 0 0
119
+ 17 49 1 0 0 0
120
+ 17 50 1 0 0 0
121
+ 18 51 1 0 0 0
122
+ 18 52 1 0 0 0
123
+ 20 53 1 0 0 0
124
+ 20 54 1 0 0 0
125
+ 21 55 1 0 0 0
126
+ 22 56 1 0 0 0
127
+ 24 57 1 0 0 0
128
+ 25 58 1 0 0 0
129
+ 26 59 1 0 0 0
130
+ 27 60 1 0 0 0
131
+ 29 61 1 0 0 0
132
+ 30 62 1 0 0 0
133
+ 31 63 1 0 0 0
134
+ M END
135
+ $$$$
1nde/1nde_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1nde/1nde_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1ndv/1ndv_ligand.mol2 ADDED
@@ -0,0 +1,101 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:50 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1ndv_ligand
7
+ 41 44 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 N1 45.8910 47.9120 17.0220 N.pl3 1 FR0 -0.2300
14
+ 2 C2 45.3540 47.5620 18.2420 C.ar 1 FR0 0.0750
15
+ 3 C3 46.2410 48.0930 19.2240 C.ar 1 FR0 0.0112
16
+ 4 N4 47.2490 48.7360 18.5330 N.2 1 FR0 -0.3135
17
+ 5 C5 47.0230 48.5890 17.2490 C.2 1 FR0 0.2170
18
+ 6 C6 44.2280 46.8170 18.6340 C.ar 1 FR0 -0.0448
19
+ 7 C7 44.0150 46.6370 20.0250 C.ar 1 FR0 -0.0787
20
+ 8 C8 44.9070 47.1630 21.0030 C.ar 1 FR0 -0.0809
21
+ 9 C9 46.0220 47.8960 20.6040 C.ar 1 FR0 -0.0694
22
+ 10 N10 48.0120 48.9800 16.2160 N.pl3 1 FR0 -0.2497
23
+ 11 C11 49.2730 49.6300 16.5560 C.3 1 FR0 0.1124
24
+ 12 C12 48.9460 50.9970 17.0030 C.2 1 FR0 0.1080
25
+ 13 S15 49.6110 51.8090 18.3630 S.3 1 FR0 0.0475
26
+ 14 C16 48.7250 53.3350 17.9660 C.2 1 FR0 0.1088
27
+ 15 C17 47.8580 53.1270 16.8110 C.2 1 FR0 -0.0058
28
+ 16 C18 47.9940 51.7910 16.2720 C.2 1 FR0 0.0019
29
+ 17 C19 48.6830 54.5530 18.5670 C.2 1 FR0 0.1024
30
+ 18 N20 49.7550 54.4920 19.6080 N.2 1 FR0 -0.2659
31
+ 19 C21 50.1180 55.5990 20.3060 C.2 1 FR0 0.2251
32
+ 20 S22 48.9360 56.8070 19.8700 S.3 1 FR0 0.0931
33
+ 21 C23 48.1940 55.7730 18.7610 C.2 1 FR0 0.0906
34
+ 22 N26 50.9400 55.7150 21.3940 N.pl3 1 FR0 -0.2504
35
+ 23 C27 51.1020 54.7290 22.3200 C.cat 1 FR0 0.1427
36
+ 24 N28 51.1160 53.4800 21.9470 N.pl3 1 FR0 -0.3551
37
+ 25 N29 51.2040 54.9610 23.6260 N.pl3 1 FR0 -0.3551
38
+ 26 H1 45.4917 47.6915 16.0985 H 1 FR0 0.2311
39
+ 27 H2 43.5486 46.3963 17.9015 H 1 FR0 0.0533
40
+ 28 H3 43.1448 46.0809 20.3544 H 1 FR0 0.0513
41
+ 29 H4 44.7182 46.9930 22.0568 H 1 FR0 0.0508
42
+ 30 H5 46.7066 48.3062 21.3375 H 1 FR0 0.0516
43
+ 31 H6 47.8020 48.7865 15.2264 H 1 FR0 0.1952
44
+ 32 H7 49.9287 49.6677 15.6736 H 1 FR0 0.0886
45
+ 33 H8 49.7766 49.0787 17.3637 H 1 FR0 0.0886
46
+ 34 H9 47.1900 53.8848 16.4042 H 1 FR0 0.0805
47
+ 35 H10 47.4379 51.4270 15.4093 H 1 FR0 0.0645
48
+ 36 H11 47.3175 56.1048 18.2065 H 1 FR0 0.1367
49
+ 37 H12 51.4633 56.5933 21.5192 H 1 FR0 0.2140
50
+ 38 H13 51.2385 52.7347 22.6473 H 1 FR0 0.1644
51
+ 39 H14 51.0046 53.2384 20.9520 H 1 FR0 0.1644
52
+ 40 H15 51.1986 55.9286 23.9792 H 1 FR0 0.1644
53
+ 41 H16 51.2884 54.1731 24.2840 H 1 FR0 0.1644
54
+ @<TRIPOS>BOND
55
+ 1 1 2 1
56
+ 2 1 5 1
57
+ 3 2 3 ar
58
+ 4 2 6 ar
59
+ 5 3 4 1
60
+ 6 3 9 ar
61
+ 7 4 5 2
62
+ 8 5 10 1
63
+ 9 6 7 ar
64
+ 10 7 8 ar
65
+ 11 8 9 ar
66
+ 12 10 11 1
67
+ 13 11 12 1
68
+ 14 12 13 1
69
+ 15 12 16 2
70
+ 16 13 14 1
71
+ 17 14 15 2
72
+ 18 14 17 1
73
+ 19 15 16 1
74
+ 20 17 18 1
75
+ 21 17 21 2
76
+ 22 18 19 2
77
+ 23 19 20 1
78
+ 24 19 22 1
79
+ 25 20 21 1
80
+ 26 22 23 ar
81
+ 27 23 24 ar
82
+ 28 23 25 ar
83
+ 29 1 26 1
84
+ 30 6 27 1
85
+ 31 7 28 1
86
+ 32 8 29 1
87
+ 33 9 30 1
88
+ 34 10 31 1
89
+ 35 11 32 1
90
+ 36 11 33 1
91
+ 37 15 34 1
92
+ 38 16 35 1
93
+ 39 21 36 1
94
+ 40 22 37 1
95
+ 41 24 38 1
96
+ 42 24 39 1
97
+ 43 25 40 1
98
+ 44 25 41 1
99
+ @<TRIPOS>SUBSTRUCTURE
100
+ 1 FR0 1
101
+
1ndv/1ndv_ligand.sdf ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1ndv_ligand
2
+ -I-interpret-
3
+
4
+ 39 42 0 0 0 0 0 0 0 0999 V2000
5
+ 45.8910 47.9120 17.0220 N 0 0 0 0 0
6
+ 45.3540 47.5620 18.2420 C 0 0 0 0 0
7
+ 46.2410 48.0930 19.2240 C 0 0 0 0 0
8
+ 47.2490 48.7360 18.5330 N 0 0 0 0 0
9
+ 47.0230 48.5890 17.2490 C 0 0 0 0 0
10
+ 44.2280 46.8170 18.6340 C 0 0 0 0 0
11
+ 44.0150 46.6370 20.0250 C 0 0 0 0 0
12
+ 44.9070 47.1630 21.0030 C 0 0 0 0 0
13
+ 46.0220 47.8960 20.6040 C 0 0 0 0 0
14
+ 48.0120 48.9800 16.2160 N 0 0 0 0 0
15
+ 49.2730 49.6300 16.5560 C 0 0 0 0 0
16
+ 48.9460 50.9970 17.0030 C 0 0 0 0 0
17
+ 49.6110 51.8090 18.3630 S 0 0 0 0 0
18
+ 48.7250 53.3350 17.9660 C 0 0 0 0 0
19
+ 47.8580 53.1270 16.8110 C 0 0 0 0 0
20
+ 47.9940 51.7910 16.2720 C 0 0 0 0 0
21
+ 48.6830 54.5530 18.5670 C 0 0 0 0 0
22
+ 49.7550 54.4920 19.6080 N 0 0 0 0 0
23
+ 50.1180 55.5990 20.3060 C 0 0 0 0 0
24
+ 48.9360 56.8070 19.8700 S 0 0 0 0 0
25
+ 48.1940 55.7730 18.7610 C 0 0 0 0 0
26
+ 50.9400 55.7150 21.3940 N 0 0 0 0 0
27
+ 51.1020 54.7290 22.3200 C 0 0 0 0 0
28
+ 51.1160 53.4800 21.9470 N 0 0 0 0 0
29
+ 51.2040 54.9610 23.6260 N 0 0 0 0 0
30
+ 43.5449 46.3939 17.8975 H 0 0 0 0 0
31
+ 43.1400 46.0778 20.3562 H 0 0 0 0 0
32
+ 44.7172 46.9920 22.0626 H 0 0 0 0 0
33
+ 46.7104 48.3085 21.3416 H 0 0 0 0 0
34
+ 47.8040 48.7884 15.2360 H 0 0 0 0 0
35
+ 49.9391 49.6550 15.6936 H 0 0 0 0 0
36
+ 49.7907 49.0804 17.3421 H 0 0 0 0 0
37
+ 47.1894 53.8855 16.4038 H 0 0 0 0 0
38
+ 47.4374 51.4266 15.4085 H 0 0 0 0 0
39
+ 47.3167 56.1051 18.2059 H 0 0 0 0 0
40
+ 51.4582 56.5848 21.5180 H 0 0 0 0 0
41
+ 51.0056 53.2407 20.9616 H 0 0 0 0 0
42
+ 51.2876 54.1807 24.2776 H 0 0 0 0 0
43
+ 51.1986 55.9192 23.9757 H 0 0 0 0 0
44
+ 1 2 4 0 0 0
45
+ 1 5 4 0 0 0
46
+ 2 3 4 0 0 0
47
+ 2 6 4 0 0 0
48
+ 3 4 4 0 0 0
49
+ 3 9 4 0 0 0
50
+ 4 5 4 0 0 0
51
+ 5 10 1 0 0 0
52
+ 6 7 4 0 0 0
53
+ 7 8 4 0 0 0
54
+ 8 9 4 0 0 0
55
+ 10 11 1 0 0 0
56
+ 11 12 1 0 0 0
57
+ 12 13 4 0 0 0
58
+ 12 16 4 0 0 0
59
+ 13 14 4 0 0 0
60
+ 14 15 4 0 0 0
61
+ 14 17 1 0 0 0
62
+ 15 16 4 0 0 0
63
+ 17 18 4 0 0 0
64
+ 17 21 4 0 0 0
65
+ 18 19 4 0 0 0
66
+ 19 20 4 0 0 0
67
+ 19 22 1 0 0 0
68
+ 20 21 4 0 0 0
69
+ 22 23 1 0 0 0
70
+ 23 24 2 0 0 0
71
+ 23 25 1 0 0 0
72
+ 6 26 1 0 0 0
73
+ 7 27 1 0 0 0
74
+ 8 28 1 0 0 0
75
+ 9 29 1 0 0 0
76
+ 10 30 1 0 0 0
77
+ 11 31 1 0 0 0
78
+ 11 32 1 0 0 0
79
+ 15 33 1 0 0 0
80
+ 16 34 1 0 0 0
81
+ 21 35 1 0 0 0
82
+ 22 36 1 0 0 0
83
+ 24 37 1 0 0 0
84
+ 25 38 1 0 0 0
85
+ 25 39 1 0 0 0
86
+ M END
87
+ $$$$
1ndv/1ndv_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1ndv/1ndv_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1ngw/1ngw_ligand.mol2 ADDED
@@ -0,0 +1,188 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Sun Sep 9 21:50:04 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 1ngw_ligand
7
+ 84 88 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 N1 114.0570 87.1620 59.2440 N.pl3 1 NON -0.3016
14
+ 2 C11 114.5750 85.8730 59.1770 C.2 1 NON 0.0257
15
+ 3 C12 114.9390 85.5560 57.7920 C.2 1 NON -0.0785
16
+ 4 C13 114.6190 86.6980 57.0170 C.2 1 NON -0.0759
17
+ 5 C14 114.0760 87.6800 57.9600 C.2 1 NON 0.0260
18
+ 6 C15 113.6140 88.9960 57.6350 C.3 1 NON 0.0291
19
+ 7 C16 115.5420 84.2100 57.3110 C.3 1 NON -0.0591
20
+ 8 C17 114.7830 86.9260 55.4550 C.3 1 NON -0.0497
21
+ 9 C18 116.0470 86.2640 54.8600 C.3 1 NON -0.0630
22
+ 10 N2 111.6460 89.1150 59.1450 N.pl3 1 NON -0.3016
23
+ 11 C21 112.3420 89.5380 58.0140 C.2 1 NON 0.0257
24
+ 12 C22 111.4250 90.3010 57.1470 C.2 1 NON -0.0785
25
+ 13 C23 110.1830 90.3240 57.7740 C.2 1 NON -0.0759
26
+ 14 C24 110.3340 89.5780 59.0210 C.2 1 NON 0.0260
27
+ 15 C25 109.3100 89.3320 60.0000 C.3 1 NON 0.0291
28
+ 16 C26 111.7640 90.9460 55.8050 C.3 1 NON -0.0591
29
+ 17 C27 108.8820 91.0090 57.2390 C.3 1 NON -0.0497
30
+ 18 C28 108.7370 92.4010 57.8570 C.3 1 NON -0.0630
31
+ 19 N3 110.7670 88.0310 61.4710 N.pl3 1 NON -0.3016
32
+ 20 C31 109.5320 88.5820 61.1890 C.2 1 NON 0.0257
33
+ 21 C32 108.7540 88.6710 62.4360 C.2 1 NON -0.0784
34
+ 22 C33 109.5600 88.1630 63.4630 C.2 1 NON -0.0740
35
+ 23 C34 110.8240 87.7660 62.8180 C.2 1 NON 0.0261
36
+ 24 C35 112.0330 87.4330 63.4590 C.3 1 NON 0.0291
37
+ 25 C36 107.3050 89.2260 62.5910 C.3 1 NON -0.0591
38
+ 26 C37 109.1800 88.0370 65.0080 C.3 1 NON -0.0352
39
+ 27 C38 109.4120 89.3490 65.8540 C.3 1 NON 0.0023
40
+ 28 C39 109.4020 89.0870 67.3840 C.2 1 NON 0.0357
41
+ 29 O31 108.5930 88.1090 67.9230 O.co2 1 NON -0.5689
42
+ 30 O32 110.2010 89.8370 68.2180 O.co2 1 NON -0.5689
43
+ 31 N4 113.7150 86.5700 61.9020 N.pl3 1 NON -0.3016
44
+ 32 C41 112.8280 86.3940 62.9470 C.2 1 NON 0.0261
45
+ 33 C42 112.8400 85.0020 63.4050 C.2 1 NON -0.0740
46
+ 34 C43 113.7730 84.3460 62.5870 C.2 1 NON -0.0784
47
+ 35 C44 114.3070 85.3440 61.6410 C.2 1 NON 0.0257
48
+ 36 C45 114.7130 85.0050 60.3170 C.3 1 NON 0.0291
49
+ 37 C46 114.1610 82.8350 62.6570 C.3 1 NON -0.0591
50
+ 38 C47 111.9670 84.3580 64.5860 C.3 1 NON -0.0352
51
+ 39 C48 112.3640 84.7580 66.0710 C.3 1 NON 0.0023
52
+ 40 C49 111.4630 84.0970 67.1680 C.2 1 NON 0.0357
53
+ 41 O41 110.6400 83.0320 66.8550 O.co2 1 NON -0.5689
54
+ 42 O42 111.4770 84.5750 68.4650 O.co2 1 NON -0.5689
55
+ 43 H1 113.7216 87.6421 60.0913 H 1 NON 0.2215
56
+ 44 H2 113.6418 89.0537 56.5369 H 1 NON 0.0524
57
+ 45 H3 114.3627 89.6823 58.0574 H 1 NON 0.0524
58
+ 46 H4 115.6658 83.5355 58.1711 H 1 NON 0.0284
59
+ 47 H5 116.5212 84.3928 56.8445 H 1 NON 0.0284
60
+ 48 H6 114.8665 83.7472 56.5765 H 1 NON 0.0284
61
+ 49 H7 114.8359 88.0083 55.2656 H 1 NON 0.0317
62
+ 50 H8 113.9007 86.5078 54.9484 H 1 NON 0.0317
63
+ 51 H9 116.0918 86.4646 53.7794 H 1 NON 0.0241
64
+ 52 H10 116.0067 85.1780 55.0300 H 1 NON 0.0241
65
+ 53 H11 116.9419 86.6785 55.3472 H 1 NON 0.0241
66
+ 54 H12 112.0280 88.5637 59.9267 H 1 NON 0.2215
67
+ 55 H13 108.4984 88.8169 59.4652 H 1 NON 0.0524
68
+ 56 H14 108.9620 90.3225 60.3284 H 1 NON 0.0524
69
+ 57 H15 112.8220 90.7619 55.5666 H 1 NON 0.0284
70
+ 58 H16 111.5845 92.0297 55.8632 H 1 NON 0.0284
71
+ 59 H17 111.1299 90.5110 55.0185 H 1 NON 0.0284
72
+ 60 H18 108.0092 90.3967 57.5097 H 1 NON 0.0317
73
+ 61 H19 108.9409 91.0999 56.1444 H 1 NON 0.0317
74
+ 62 H20 107.8210 92.8772 57.4772 H 1 NON 0.0241
75
+ 63 H21 109.6087 93.0150 57.5864 H 1 NON 0.0241
76
+ 64 H22 108.6770 92.3118 58.9517 H 1 NON 0.0241
77
+ 65 H23 111.5167 87.8498 60.7884 H 1 NON 0.2215
78
+ 66 H24 111.7809 87.1613 64.4947 H 1 NON 0.0524
79
+ 67 H25 112.6548 88.3404 63.4589 H 1 NON 0.0524
80
+ 68 H26 106.9304 89.5523 61.6096 H 1 NON 0.0284
81
+ 69 H27 107.3118 90.0806 63.2835 H 1 NON 0.0284
82
+ 70 H28 106.6506 88.4366 62.9892 H 1 NON 0.0284
83
+ 71 H29 109.7908 87.2342 65.4466 H 1 NON 0.0337
84
+ 72 H30 108.1157 87.7680 65.0781 H 1 NON 0.0337
85
+ 73 H31 108.6138 90.0671 65.6151 H 1 NON 0.0441
86
+ 74 H32 110.3863 89.7782 65.5772 H 1 NON 0.0441
87
+ 75 H33 113.9025 87.4532 61.4063 H 1 NON 0.2215
88
+ 76 H34 115.7865 84.7750 60.3861 H 1 NON 0.0524
89
+ 77 H35 114.1577 84.0904 60.0619 H 1 NON 0.0524
90
+ 78 H36 113.5957 82.3484 63.4655 H 1 NON 0.0284
91
+ 79 H37 115.2389 82.7420 62.8559 H 1 NON 0.0284
92
+ 80 H38 113.9217 82.3502 61.6990 H 1 NON 0.0284
93
+ 81 H39 112.0500 83.2643 64.5027 H 1 NON 0.0337
94
+ 82 H40 110.9209 84.6594 64.4288 H 1 NON 0.0337
95
+ 83 H41 112.2835 85.8507 66.1688 H 1 NON 0.0441
96
+ 84 H42 113.4053 84.4499 66.2462 H 1 NON 0.0441
97
+ @<TRIPOS>BOND
98
+ 1 1 2 1
99
+ 2 1 5 1
100
+ 3 2 3 2
101
+ 4 2 36 1
102
+ 5 3 4 1
103
+ 6 3 7 1
104
+ 7 4 5 2
105
+ 8 4 8 1
106
+ 9 5 6 1
107
+ 10 6 11 1
108
+ 11 8 9 1
109
+ 12 11 10 1
110
+ 13 10 14 1
111
+ 14 11 12 2
112
+ 15 12 13 1
113
+ 16 12 16 1
114
+ 17 13 14 2
115
+ 18 13 17 1
116
+ 19 14 15 1
117
+ 20 15 20 1
118
+ 21 17 18 1
119
+ 22 20 19 1
120
+ 23 19 23 1
121
+ 24 20 21 2
122
+ 25 21 22 1
123
+ 26 21 25 1
124
+ 27 22 23 2
125
+ 28 22 26 1
126
+ 29 23 24 1
127
+ 30 24 32 1
128
+ 31 26 27 1
129
+ 32 27 28 1
130
+ 33 28 29 ar
131
+ 34 28 30 ar
132
+ 35 32 31 1
133
+ 36 31 35 1
134
+ 37 32 33 2
135
+ 38 33 34 1
136
+ 39 33 38 1
137
+ 40 34 35 2
138
+ 41 34 37 1
139
+ 42 35 36 1
140
+ 43 38 39 1
141
+ 44 39 40 1
142
+ 45 40 41 ar
143
+ 46 40 42 ar
144
+ 47 1 43 1
145
+ 48 6 44 1
146
+ 49 6 45 1
147
+ 50 7 46 1
148
+ 51 7 47 1
149
+ 52 7 48 1
150
+ 53 8 49 1
151
+ 54 8 50 1
152
+ 55 9 51 1
153
+ 56 9 52 1
154
+ 57 9 53 1
155
+ 58 10 54 1
156
+ 59 15 55 1
157
+ 60 15 56 1
158
+ 61 16 57 1
159
+ 62 16 58 1
160
+ 63 16 59 1
161
+ 64 17 60 1
162
+ 65 17 61 1
163
+ 66 18 62 1
164
+ 67 18 63 1
165
+ 68 18 64 1
166
+ 69 19 65 1
167
+ 70 24 66 1
168
+ 71 24 67 1
169
+ 72 25 68 1
170
+ 73 25 69 1
171
+ 74 25 70 1
172
+ 75 26 71 1
173
+ 76 26 72 1
174
+ 77 27 73 1
175
+ 78 27 74 1
176
+ 79 31 75 1
177
+ 80 36 76 1
178
+ 81 36 77 1
179
+ 82 37 78 1
180
+ 83 37 79 1
181
+ 84 37 80 1
182
+ 85 38 81 1
183
+ 86 38 82 1
184
+ 87 39 83 1
185
+ 88 39 84 1
186
+ @<TRIPOS>SUBSTRUCTURE
187
+ 1 NON 1
188
+
1ngw/1ngw_ligand.sdf ADDED
@@ -0,0 +1,174 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 1ngw_ligand
2
+ -I-interpret-
3
+
4
+ 82 86 0 0 0 0 0 0 0 0999 V2000
5
+ 114.0570 87.1620 59.2440 N 0 0 0 0 0
6
+ 114.5750 85.8730 59.1770 C 0 0 0 0 0
7
+ 114.9390 85.5560 57.7920 C 0 0 0 0 0
8
+ 114.6190 86.6980 57.0170 C 0 0 0 0 0
9
+ 114.0760 87.6800 57.9600 C 0 0 0 0 0
10
+ 113.6140 88.9960 57.6350 C 0 0 0 0 0
11
+ 115.5420 84.2100 57.3110 C 0 0 0 0 0
12
+ 114.7830 86.9260 55.4550 C 0 0 0 0 0
13
+ 116.0470 86.2640 54.8600 C 0 0 0 0 0
14
+ 111.6460 89.1150 59.1450 N 0 0 0 0 0
15
+ 112.3420 89.5380 58.0140 C 0 0 0 0 0
16
+ 111.4250 90.3010 57.1470 C 0 0 0 0 0
17
+ 110.1830 90.3240 57.7740 C 0 0 0 0 0
18
+ 110.3340 89.5780 59.0210 C 0 0 0 0 0
19
+ 109.3100 89.3320 60.0000 C 0 0 0 0 0
20
+ 111.7640 90.9460 55.8050 C 0 0 0 0 0
21
+ 108.8820 91.0090 57.2390 C 0 0 0 0 0
22
+ 108.7370 92.4010 57.8570 C 0 0 0 0 0
23
+ 110.7670 88.0310 61.4710 N 0 0 0 0 0
24
+ 109.5320 88.5820 61.1890 C 0 0 0 0 0
25
+ 108.7540 88.6710 62.4360 C 0 0 0 0 0
26
+ 109.5600 88.1630 63.4630 C 0 0 0 0 0
27
+ 110.8240 87.7660 62.8180 C 0 0 0 0 0
28
+ 112.0330 87.4330 63.4590 C 0 0 0 0 0
29
+ 107.3050 89.2260 62.5910 C 0 0 0 0 0
30
+ 109.1800 88.0370 65.0080 C 0 0 0 0 0
31
+ 109.4120 89.3490 65.8540 C 0 0 0 0 0
32
+ 109.4020 89.0870 67.3840 C 0 0 0 0 0
33
+ 108.5930 88.1090 67.9230 O 0 0 0 0 0
34
+ 110.2010 89.8370 68.2180 O 0 0 0 0 0
35
+ 113.7150 86.5700 61.9020 N 0 0 0 0 0
36
+ 112.8280 86.3940 62.9470 C 0 0 0 0 0
37
+ 112.8400 85.0020 63.4050 C 0 0 0 0 0
38
+ 113.7730 84.3460 62.5870 C 0 0 0 0 0
39
+ 114.3070 85.3440 61.6410 C 0 0 0 0 0
40
+ 114.7130 85.0050 60.3170 C 0 0 0 0 0
41
+ 114.1610 82.8350 62.6570 C 0 0 0 0 0
42
+ 111.9670 84.3580 64.5860 C 0 0 0 0 0
43
+ 112.3640 84.7580 66.0710 C 0 0 0 0 0
44
+ 111.4630 84.0970 67.1680 C 0 0 0 0 0
45
+ 110.6400 83.0320 66.8550 O 0 0 0 0 0
46
+ 111.4770 84.5750 68.4650 O 0 0 0 0 0
47
+ 113.5337 88.9524 56.5488 H 0 0 0 0 0
48
+ 114.3097 89.6291 58.1857 H 0 0 0 0 0
49
+ 116.4876 84.0332 57.8236 H 0 0 0 0 0
50
+ 114.8477 83.4008 57.5373 H 0 0 0 0 0
51
+ 115.7129 84.2537 56.2354 H 0 0 0 0 0
52
+ 114.8688 87.9999 55.2895 H 0 0 0 0 0
53
+ 113.9186 86.4754 54.9672 H 0 0 0 0 0
54
+ 116.9330 86.6755 55.3436 H 0 0 0 0 0
55
+ 116.0059 85.1880 55.0291 H 0 0 0 0 0
56
+ 116.0902 86.4634 53.7893 H 0 0 0 0 0
57
+ 108.5894 88.7222 59.4550 H 0 0 0 0 0
58
+ 109.0843 90.3297 60.3765 H 0 0 0 0 0
59
+ 112.5569 91.6805 55.9463 H 0 0 0 0 0
60
+ 112.0988 90.1775 55.1082 H 0 0 0 0 0
61
+ 110.8774 91.4388 55.4059 H 0 0 0 0 0
62
+ 108.0179 90.4026 57.5104 H 0 0 0 0 0
63
+ 108.9431 91.1009 56.1546 H 0 0 0 0 0
64
+ 108.6777 92.3112 58.9417 H 0 0 0 0 0
65
+ 109.6013 93.0083 57.5882 H 0 0 0 0 0
66
+ 107.8291 92.8718 57.4799 H 0 0 0 0 0
67
+ 111.7340 87.0887 64.4490 H 0 0 0 0 0
68
+ 112.6509 88.3257 63.3623 H 0 0 0 0 0
69
+ 107.2796 90.2670 62.2688 H 0 0 0 0 0
70
+ 106.6241 88.6373 61.9762 H 0 0 0 0 0
71
+ 107.0020 89.1602 63.6360 H 0 0 0 0 0
72
+ 109.8261 87.2681 65.4317 H 0 0 0 0 0
73
+ 108.1142 87.8137 65.0552 H 0 0 0 0 0
74
+ 108.5999 90.0401 65.6281 H 0 0 0 0 0
75
+ 110.3913 89.7480 65.5898 H 0 0 0 0 0
76
+ 108.1018 87.6781 67.2197 H 0 0 0 0 0
77
+ 115.7947 84.9143 60.4165 H 0 0 0 0 0
78
+ 114.0462 84.1793 60.0685 H 0 0 0 0 0
79
+ 114.5666 82.6107 63.6435 H 0 0 0 0 0
80
+ 113.2751 82.2251 62.4797 H 0 0 0 0 0
81
+ 114.9111 82.6182 61.8965 H 0 0 0 0 0
82
+ 112.1178 83.2807 64.5160 H 0 0 0 0 0
83
+ 110.9504 84.7230 64.4396 H 0 0 0 0 0
84
+ 112.2433 85.8377 66.1594 H 0 0 0 0 0
85
+ 113.3843 84.4129 66.2381 H 0 0 0 0 0
86
+ 112.0918 85.3096 68.5275 H 0 0 0 0 0
87
+ 1 2 4 0 0 0
88
+ 1 5 4 0 0 0
89
+ 2 3 4 0 0 0
90
+ 2 36 1 0 0 0
91
+ 3 4 4 0 0 0
92
+ 3 7 1 0 0 0
93
+ 4 5 4 0 0 0
94
+ 4 8 1 0 0 0
95
+ 5 6 1 0 0 0
96
+ 6 11 1 0 0 0
97
+ 8 9 1 0 0 0
98
+ 11 10 4 0 0 0
99
+ 10 14 4 0 0 0
100
+ 11 12 4 0 0 0
101
+ 12 13 4 0 0 0
102
+ 12 16 1 0 0 0
103
+ 13 14 4 0 0 0
104
+ 13 17 1 0 0 0
105
+ 14 15 1 0 0 0
106
+ 15 20 1 0 0 0
107
+ 17 18 1 0 0 0
108
+ 20 19 4 0 0 0
109
+ 19 23 4 0 0 0
110
+ 20 21 4 0 0 0
111
+ 21 22 4 0 0 0
112
+ 21 25 1 0 0 0
113
+ 22 23 4 0 0 0
114
+ 22 26 1 0 0 0
115
+ 23 24 1 0 0 0
116
+ 24 32 1 0 0 0
117
+ 26 27 1 0 0 0
118
+ 27 28 1 0 0 0
119
+ 28 29 1 0 0 0
120
+ 28 30 2 0 0 0
121
+ 32 31 4 0 0 0
122
+ 31 35 4 0 0 0
123
+ 32 33 4 0 0 0
124
+ 33 34 4 0 0 0
125
+ 33 38 1 0 0 0
126
+ 34 35 4 0 0 0
127
+ 34 37 1 0 0 0
128
+ 35 36 1 0 0 0
129
+ 38 39 1 0 0 0
130
+ 39 40 1 0 0 0
131
+ 40 41 2 0 0 0
132
+ 40 42 1 0 0 0
133
+ 6 43 1 0 0 0
134
+ 6 44 1 0 0 0
135
+ 7 45 1 0 0 0
136
+ 7 46 1 0 0 0
137
+ 7 47 1 0 0 0
138
+ 8 48 1 0 0 0
139
+ 8 49 1 0 0 0
140
+ 9 50 1 0 0 0
141
+ 9 51 1 0 0 0
142
+ 9 52 1 0 0 0
143
+ 15 53 1 0 0 0
144
+ 15 54 1 0 0 0
145
+ 16 55 1 0 0 0
146
+ 16 56 1 0 0 0
147
+ 16 57 1 0 0 0
148
+ 17 58 1 0 0 0
149
+ 17 59 1 0 0 0
150
+ 18 60 1 0 0 0
151
+ 18 61 1 0 0 0
152
+ 18 62 1 0 0 0
153
+ 24 63 1 0 0 0
154
+ 24 64 1 0 0 0
155
+ 25 65 1 0 0 0
156
+ 25 66 1 0 0 0
157
+ 25 67 1 0 0 0
158
+ 26 68 1 0 0 0
159
+ 26 69 1 0 0 0
160
+ 27 70 1 0 0 0
161
+ 27 71 1 0 0 0
162
+ 29 72 1 0 0 0
163
+ 36 73 1 0 0 0
164
+ 36 74 1 0 0 0
165
+ 37 75 1 0 0 0
166
+ 37 76 1 0 0 0
167
+ 37 77 1 0 0 0
168
+ 38 78 1 0 0 0
169
+ 38 79 1 0 0 0
170
+ 39 80 1 0 0 0
171
+ 39 81 1 0 0 0
172
+ 42 82 1 0 0 0
173
+ M END
174
+ $$$$
1ngw/1ngw_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
1ngw/1ngw_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2bo4/2bo4_ligand.mol2 ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:52 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 2bo4_ligand
7
+ 18 17 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 CAC 87.9430 -2.3560 42.4440 C.2 1 FLC 0.0371
14
+ 2 CA 87.3510 -2.3750 41.0680 C.3 1 FLC 0.0356
15
+ 3 CB 85.8300 -2.1700 41.0840 C.3 1 FLC 0.1328
16
+ 4 CBC 85.1930 -2.5880 42.4120 C.2 1 FLC 0.0796
17
+ 5 CG 85.4550 -0.7180 40.7060 C.3 1 FLC 0.0356
18
+ 6 CGC 84.1510 -0.6060 39.9280 C.2 1 FLC 0.0371
19
+ 7 OA1 88.7230 -3.2740 42.7910 O.co2 1 FLC -0.5690
20
+ 8 OA2 87.6140 -1.3980 43.1800 O.co2 1 FLC -0.5690
21
+ 9 OB1 84.7070 -1.7710 43.2570 O.co2 1 FLC -0.5449
22
+ 10 OB2 85.1790 -3.8180 42.6320 O.co2 1 FLC -0.5449
23
+ 11 OG1 83.3440 0.2770 40.2400 O.co2 1 FLC -0.5690
24
+ 12 OG2 83.9050 -1.3790 38.9820 O.co2 1 FLC -0.5690
25
+ 13 OHB 85.3820 -3.1190 40.1090 O.3 1 FLC -0.3818
26
+ 14 H1 87.5718 -3.3464 40.6015 H 1 FLC 0.0452
27
+ 15 H2 87.8099 -1.5705 40.4746 H 1 FLC 0.0452
28
+ 16 H3 86.2642 -0.2994 40.0896 H 1 FLC 0.0452
29
+ 17 H4 85.3585 -0.1319 41.6318 H 1 FLC 0.0452
30
+ 18 H5 85.6630 -3.9899 40.3640 H 1 FLC 0.2091
31
+ @<TRIPOS>BOND
32
+ 1 1 2 1
33
+ 2 1 7 ar
34
+ 3 1 8 ar
35
+ 4 2 3 1
36
+ 5 3 4 1
37
+ 6 3 5 1
38
+ 7 3 13 1
39
+ 8 4 9 ar
40
+ 9 4 10 ar
41
+ 10 5 6 1
42
+ 11 6 11 ar
43
+ 12 6 12 ar
44
+ 13 2 14 1
45
+ 14 2 15 1
46
+ 15 5 16 1
47
+ 16 5 17 1
48
+ 17 13 18 1
49
+ @<TRIPOS>SUBSTRUCTURE
50
+ 1 FLC 1
51
+
2bo4/2bo4_ligand.sdf ADDED
@@ -0,0 +1,47 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2bo4_ligand
2
+ -I-interpret-
3
+
4
+ 21 20 0 0 0 0 0 0 0 0999 V2000
5
+ 87.9430 -2.3560 42.4440 C 0 0 0 0 0
6
+ 87.3510 -2.3750 41.0680 C 0 0 0 0 0
7
+ 85.8300 -2.1700 41.0840 C 0 0 0 0 0
8
+ 85.1930 -2.5880 42.4120 C 0 0 0 0 0
9
+ 85.4550 -0.7180 40.7060 C 0 0 0 0 0
10
+ 84.1510 -0.6060 39.9280 C 0 0 0 0 0
11
+ 88.7230 -3.2740 42.7910 O 0 0 0 0 0
12
+ 87.6140 -1.3980 43.1800 O 0 0 0 0 0
13
+ 84.7070 -1.7710 43.2570 O 0 0 0 0 0
14
+ 85.1790 -3.8180 42.6320 O 0 0 0 0 0
15
+ 83.3440 0.2770 40.2400 O 0 0 0 0 0
16
+ 83.9050 -1.3790 38.9820 O 0 0 0 0 0
17
+ 85.3820 -3.1190 40.1090 O 0 0 0 0 0
18
+ 87.5557 -3.3500 40.6257 H 0 0 0 0 0
19
+ 87.7957 -1.5594 40.4977 H 0 0 0 0 0
20
+ 86.2497 -0.3315 40.0679 H 0 0 0 0 0
21
+ 85.3295 -0.1613 41.6347 H 0 0 0 0 0
22
+ 88.8270 -3.8950 42.0664 H 0 0 0 0 0
23
+ 84.8027 -0.8751 42.9257 H 0 0 0 0 0
24
+ 84.6321 -1.9972 38.8780 H 0 0 0 0 0
25
+ 85.6359 -4.0030 40.3842 H 0 0 0 0 0
26
+ 1 2 1 0 0 0
27
+ 1 7 1 0 0 0
28
+ 1 8 2 0 0 0
29
+ 2 3 1 0 0 0
30
+ 3 4 1 0 0 0
31
+ 3 5 1 0 0 0
32
+ 3 13 1 0 0 0
33
+ 4 9 1 0 0 0
34
+ 4 10 2 0 0 0
35
+ 5 6 1 0 0 0
36
+ 6 11 2 0 0 0
37
+ 6 12 1 0 0 0
38
+ 2 14 1 0 0 0
39
+ 2 15 1 0 0 0
40
+ 5 16 1 0 0 0
41
+ 5 17 1 0 0 0
42
+ 7 18 1 0 0 0
43
+ 9 19 1 0 0 0
44
+ 12 20 1 0 0 0
45
+ 13 21 1 0 0 0
46
+ M END
47
+ $$$$
2bo4/2bo4_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2bo4/2bo4_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2brm/2brm_ligand.mol2 ADDED
@@ -0,0 +1,105 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:53 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 2brm_ligand
7
+ 43 46 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C2 6.0690 -2.2850 19.4910 C.ar 1 DFZ 0.0517
14
+ 2 C10 2.0930 -4.2810 19.7290 C.2 1 DFZ 0.0827
15
+ 3 C11 0.7620 -4.6430 19.9740 C.ar 1 DFZ 0.0083
16
+ 4 C12 0.2530 -5.9090 19.7010 C.ar 1 DFZ -0.0521
17
+ 5 C13 -1.0810 -6.2130 19.9650 C.ar 1 DFZ -0.0617
18
+ 6 C14 -1.9300 -5.2530 20.5090 C.ar 1 DFZ -0.0624
19
+ 7 C15 -1.4340 -3.9840 20.7860 C.ar 1 DFZ -0.0617
20
+ 8 C16 -0.0980 -3.6880 20.5170 C.ar 1 DFZ -0.0521
21
+ 9 C19 2.1820 -6.3430 17.1790 C.ar 1 DFZ -0.0620
22
+ 10 C20 2.0550 -7.5920 16.5670 C.ar 1 DFZ -0.0668
23
+ 11 C21 2.6560 -8.7200 17.1260 C.ar 1 DFZ -0.0667
24
+ 12 C22 3.3880 -8.5960 18.3040 C.ar 1 DFZ -0.0668
25
+ 13 N1 4.8520 -2.1560 19.9810 N.ar 1 DFZ -0.2743
26
+ 14 C6 3.9260 -3.0990 19.7700 C.ar 1 DFZ 0.1401
27
+ 15 C5 4.2350 -4.2300 19.0210 C.ar 1 DFZ 0.0599
28
+ 16 N9 5.9720 -5.3620 17.7820 N.pl3 1 DFZ -0.2990
29
+ 17 C4 5.5390 -4.3340 18.5170 C.ar 1 DFZ 0.1221
30
+ 18 N3 6.4120 -3.3440 18.7820 N.ar 1 DFZ -0.2715
31
+ 19 N90 2.6610 -3.1610 20.1650 N.pl3 1 DFZ -0.2559
32
+ 20 C17 3.5100 -7.3500 18.9160 C.ar 1 DFZ -0.0620
33
+ 21 C1 3.0590 -4.9830 18.9950 C.2 1 DFZ 0.0068
34
+ 22 C18 2.9100 -6.2190 18.3600 C.ar 1 DFZ -0.0346
35
+ 23 C23 7.5920 -4.3990 16.1920 C.3 1 DFZ 0.0648
36
+ 24 C8 7.3640 -5.4350 17.3020 C.3 1 DFZ 0.0533
37
+ 25 O24 8.4060 -3.3250 16.6890 O.3 1 DFZ -0.3930
38
+ 26 H1 6.8014 -1.5070 19.6738 H 1 DFZ 0.0987
39
+ 27 H2 0.9018 -6.6675 19.2781 H 1 DFZ 0.0621
40
+ 28 H3 -1.4605 -7.2043 19.7452 H 1 DFZ 0.0616
41
+ 29 H4 -2.9671 -5.4925 20.7145 H 1 DFZ 0.0612
42
+ 30 H5 -2.0838 -3.2269 21.2098 H 1 DFZ 0.0616
43
+ 31 H6 0.2800 -2.6955 20.7343 H 1 DFZ 0.0621
44
+ 32 H7 1.7146 -5.4713 16.7355 H 1 DFZ 0.0576
45
+ 33 H8 1.4846 -7.6857 15.6499 H 1 DFZ 0.0604
46
+ 34 H9 2.5538 -9.6868 16.6464 H 1 DFZ 0.0576
47
+ 35 H10 3.8616 -9.4663 18.7438 H 1 DFZ 0.0604
48
+ 36 H11 5.3179 -6.1215 17.5451 H 1 DFZ 0.1865
49
+ 37 H12 2.1859 -2.4426 20.7299 H 1 DFZ 0.2309
50
+ 38 H13 4.0777 -7.2580 19.8349 H 1 DFZ 0.0576
51
+ 39 H14 6.6223 -3.9991 15.8608 H 1 DFZ 0.0578
52
+ 40 H15 8.0999 -4.8794 15.3428 H 1 DFZ 0.0578
53
+ 41 H16 7.5604 -6.4423 16.9060 H 1 DFZ 0.0549
54
+ 42 H17 8.0488 -5.2297 18.1380 H 1 DFZ 0.0549
55
+ 43 H18 7.9671 -2.9095 17.4220 H 1 DFZ 0.2095
56
+ @<TRIPOS>BOND
57
+ 1 13 1 ar
58
+ 2 18 1 ar
59
+ 3 2 3 1
60
+ 4 2 19 1
61
+ 5 21 2 2
62
+ 6 3 4 ar
63
+ 7 3 8 ar
64
+ 8 4 5 ar
65
+ 9 5 6 ar
66
+ 10 7 6 ar
67
+ 11 8 7 ar
68
+ 12 9 10 ar
69
+ 13 22 9 ar
70
+ 14 10 11 ar
71
+ 15 12 11 ar
72
+ 16 20 12 ar
73
+ 17 14 13 ar
74
+ 18 15 14 ar
75
+ 19 14 19 1
76
+ 20 15 17 ar
77
+ 21 21 15 1
78
+ 22 17 16 1
79
+ 23 16 24 1
80
+ 24 17 18 ar
81
+ 25 22 20 ar
82
+ 26 21 22 1
83
+ 27 24 23 1
84
+ 28 23 25 1
85
+ 29 1 26 1
86
+ 30 4 27 1
87
+ 31 5 28 1
88
+ 32 6 29 1
89
+ 33 7 30 1
90
+ 34 8 31 1
91
+ 35 9 32 1
92
+ 36 10 33 1
93
+ 37 11 34 1
94
+ 38 12 35 1
95
+ 39 16 36 1
96
+ 40 19 37 1
97
+ 41 20 38 1
98
+ 42 23 39 1
99
+ 43 23 40 1
100
+ 44 24 41 1
101
+ 45 24 42 1
102
+ 46 25 43 1
103
+ @<TRIPOS>SUBSTRUCTURE
104
+ 1 DFZ 1
105
+
2brm/2brm_ligand.sdf ADDED
@@ -0,0 +1,93 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2brm_ligand
2
+ -I-interpret-
3
+
4
+ 42 45 0 0 0 0 0 0 0 0999 V2000
5
+ 6.0690 -2.2850 19.4910 C 0 0 0 0 0
6
+ 2.0930 -4.2810 19.7290 C 0 0 0 0 0
7
+ 0.7620 -4.6430 19.9740 C 0 0 0 0 0
8
+ 0.2530 -5.9090 19.7010 C 0 0 0 0 0
9
+ -1.0810 -6.2130 19.9650 C 0 0 0 0 0
10
+ -1.9300 -5.2530 20.5090 C 0 0 0 0 0
11
+ -1.4340 -3.9840 20.7860 C 0 0 0 0 0
12
+ -0.0980 -3.6880 20.5170 C 0 0 0 0 0
13
+ 2.1820 -6.3430 17.1790 C 0 0 0 0 0
14
+ 2.0550 -7.5920 16.5670 C 0 0 0 0 0
15
+ 2.6560 -8.7200 17.1260 C 0 0 0 0 0
16
+ 3.3880 -8.5960 18.3040 C 0 0 0 0 0
17
+ 4.8520 -2.1560 19.9810 N 0 0 0 0 0
18
+ 3.9260 -3.0990 19.7700 C 0 0 0 0 0
19
+ 4.2350 -4.2300 19.0210 C 0 0 0 0 0
20
+ 5.9720 -5.3620 17.7820 N 0 0 0 0 0
21
+ 5.5390 -4.3340 18.5170 C 0 0 0 0 0
22
+ 6.4120 -3.3440 18.7820 N 0 0 0 0 0
23
+ 2.6610 -3.1610 20.1650 N 0 0 0 0 0
24
+ 3.5100 -7.3500 18.9160 C 0 0 0 0 0
25
+ 3.0590 -4.9830 18.9950 C 0 0 0 0 0
26
+ 2.9100 -6.2190 18.3600 C 0 0 0 0 0
27
+ 7.5920 -4.3990 16.1920 C 0 0 0 0 0
28
+ 7.3640 -5.4350 17.3020 C 0 0 0 0 0
29
+ 8.4060 -3.3250 16.6890 O 0 0 0 0 0
30
+ 6.8055 -1.5027 19.6748 H 0 0 0 0 0
31
+ 0.9053 -6.6717 19.2757 H 0 0 0 0 0
32
+ -1.4626 -7.2098 19.7440 H 0 0 0 0 0
33
+ -2.9728 -5.4938 20.7156 H 0 0 0 0 0
34
+ -2.0874 -3.2227 21.2122 H 0 0 0 0 0
35
+ 0.2821 -2.6901 20.7355 H 0 0 0 0 0
36
+ 1.7120 -5.4664 16.7330 H 0 0 0 0 0
37
+ 1.4815 -7.6862 15.6449 H 0 0 0 0 0
38
+ 2.5533 -9.6921 16.6438 H 0 0 0 0 0
39
+ 3.8642 -9.4711 18.7462 H 0 0 0 0 0
40
+ 5.3242 -6.1142 17.5474 H 0 0 0 0 0
41
+ 4.0808 -7.2575 19.8400 H 0 0 0 0 0
42
+ 6.6305 -4.0018 15.8666 H 0 0 0 0 0
43
+ 8.0976 -4.8757 15.3523 H 0 0 0 0 0
44
+ 7.5549 -6.4325 16.9061 H 0 0 0 0 0
45
+ 8.0405 -5.2270 18.1310 H 0 0 0 0 0
46
+ 8.5450 -2.6808 15.9909 H 0 0 0 0 0
47
+ 13 1 4 0 0 0
48
+ 18 1 4 0 0 0
49
+ 2 3 1 0 0 0
50
+ 2 19 4 0 0 0
51
+ 21 2 4 0 0 0
52
+ 3 4 4 0 0 0
53
+ 3 8 4 0 0 0
54
+ 4 5 4 0 0 0
55
+ 5 6 4 0 0 0
56
+ 7 6 4 0 0 0
57
+ 8 7 4 0 0 0
58
+ 9 10 4 0 0 0
59
+ 22 9 4 0 0 0
60
+ 10 11 4 0 0 0
61
+ 12 11 4 0 0 0
62
+ 20 12 4 0 0 0
63
+ 14 13 4 0 0 0
64
+ 15 14 4 0 0 0
65
+ 14 19 4 0 0 0
66
+ 15 17 4 0 0 0
67
+ 21 15 4 0 0 0
68
+ 17 16 1 0 0 0
69
+ 16 24 1 0 0 0
70
+ 17 18 4 0 0 0
71
+ 22 20 4 0 0 0
72
+ 21 22 1 0 0 0
73
+ 24 23 1 0 0 0
74
+ 23 25 1 0 0 0
75
+ 1 26 1 0 0 0
76
+ 4 27 1 0 0 0
77
+ 5 28 1 0 0 0
78
+ 6 29 1 0 0 0
79
+ 7 30 1 0 0 0
80
+ 8 31 1 0 0 0
81
+ 9 32 1 0 0 0
82
+ 10 33 1 0 0 0
83
+ 11 34 1 0 0 0
84
+ 12 35 1 0 0 0
85
+ 16 36 1 0 0 0
86
+ 20 37 1 0 0 0
87
+ 23 38 1 0 0 0
88
+ 23 39 1 0 0 0
89
+ 24 40 1 0 0 0
90
+ 24 41 1 0 0 0
91
+ 25 42 1 0 0 0
92
+ M END
93
+ $$$$
2brm/2brm_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2brm/2brm_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2byh/2byh_ligand.mol2 ADDED
@@ -0,0 +1,98 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:52 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 2byh_ligand
7
+ 40 42 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 O6 5.6560 -2.4880 5.5440 O.2 1 2D7 -0.3868
14
+ 2 C17 4.7820 -2.4710 6.3870 C.2 1 2D7 0.1182
15
+ 3 C18 3.9620 -3.6990 6.6910 C.3 1 2D7 0.0082
16
+ 4 C14 4.5170 -1.2360 7.1850 C.ar 1 2D7 0.0162
17
+ 5 C15 3.5280 -1.2370 8.1690 C.ar 1 2D7 -0.0565
18
+ 6 C16 3.2570 -0.0870 8.9010 C.ar 1 2D7 -0.0348
19
+ 7 C13 5.2270 -0.0490 6.9600 C.ar 1 2D7 -0.0565
20
+ 8 C12 4.9460 1.0980 7.6980 C.ar 1 2D7 -0.0348
21
+ 9 C11 3.9150 1.1240 8.6270 C.ar 1 2D7 0.0712
22
+ 10 N3 3.7560 2.2280 9.3850 N.am 1 2D7 -0.2351
23
+ 11 C10 2.8530 2.5610 10.3120 C.2 1 2D7 0.2102
24
+ 12 O5 1.8700 1.8370 10.5490 O.2 1 2D7 -0.3897
25
+ 13 C8 3.0700 3.7810 11.1680 C.2 1 2D7 0.0706
26
+ 14 C9 2.1150 4.6050 11.7260 C.2 1 2D7 0.0104
27
+ 15 N1 2.7820 5.4630 12.5070 N.2 1 2D7 -0.2205
28
+ 16 N2 4.0790 5.2510 12.5160 N.pl3 1 2D7 -0.2144
29
+ 17 C7 4.3160 4.1910 11.7700 C.2 1 2D7 0.1019
30
+ 18 C5 5.7090 3.6640 11.5610 C.ar 1 2D7 0.0394
31
+ 19 C6 5.9130 2.3050 11.3540 C.ar 1 2D7 -0.0486
32
+ 20 C1 7.1660 1.8100 11.1080 C.ar 1 2D7 0.0609
33
+ 21 CL1 7.4110 0.0810 10.8860 Cl 1 2D7 -0.0867
34
+ 22 C2 8.2720 2.6270 11.0890 C.ar 1 2D7 0.0981
35
+ 23 O2 9.4540 2.0890 10.8230 O.3 1 2D7 -0.3320
36
+ 24 C3 8.1150 3.9700 11.3270 C.ar 1 2D7 0.0007
37
+ 25 C4 6.8420 4.5040 11.5730 C.ar 1 2D7 0.0979
38
+ 26 O4 6.7700 5.8180 11.8090 O.3 1 2D7 -0.3302
39
+ 27 H1 3.2322 -3.4663 7.4804 H 1 2D7 0.0446
40
+ 28 H2 4.6252 -4.5077 7.0316 H 1 2D7 0.0446
41
+ 29 H3 3.4302 -4.0189 5.7828 H 1 2D7 0.0446
42
+ 30 H4 2.9658 -2.1430 8.3644 H 1 2D7 0.0632
43
+ 31 H5 2.5239 -0.1250 9.6986 H 1 2D7 0.0518
44
+ 32 H6 6.0030 -0.0234 6.2036 H 1 2D7 0.0632
45
+ 33 H7 5.5445 1.9885 7.5439 H 1 2D7 0.0518
46
+ 34 H8 4.4465 2.9328 9.2221 H 1 2D7 0.2268
47
+ 35 H9 1.0388 4.5655 11.5642 H 1 2D7 0.0687
48
+ 36 H10 4.7832 5.8122 13.0160 H 1 2D7 0.2547
49
+ 37 H11 5.0680 1.6269 11.3877 H 1 2D7 0.0598
50
+ 38 H12 10.1205 2.7656 10.8436 H 1 2D7 0.2502
51
+ 39 H13 8.9810 4.6220 11.3247 H 1 2D7 0.0473
52
+ 40 H14 7.2889 6.0297 12.5761 H 1 2D7 0.2511
53
+ @<TRIPOS>BOND
54
+ 1 1 2 2
55
+ 2 2 3 1
56
+ 3 2 4 1
57
+ 4 4 5 ar
58
+ 5 4 7 ar
59
+ 6 5 6 ar
60
+ 7 6 9 ar
61
+ 8 7 8 ar
62
+ 9 8 9 ar
63
+ 10 9 10 1
64
+ 11 10 11 am
65
+ 12 11 12 2
66
+ 13 11 13 1
67
+ 14 13 14 1
68
+ 15 13 17 2
69
+ 16 14 15 2
70
+ 17 15 16 1
71
+ 18 16 17 1
72
+ 19 17 18 1
73
+ 20 18 19 ar
74
+ 21 18 25 ar
75
+ 22 19 20 ar
76
+ 23 20 21 1
77
+ 24 20 22 ar
78
+ 25 22 23 1
79
+ 26 22 24 ar
80
+ 27 24 25 ar
81
+ 28 25 26 1
82
+ 29 3 27 1
83
+ 30 3 28 1
84
+ 31 3 29 1
85
+ 32 5 30 1
86
+ 33 6 31 1
87
+ 34 7 32 1
88
+ 35 8 33 1
89
+ 36 10 34 1
90
+ 37 14 35 1
91
+ 38 16 36 1
92
+ 39 19 37 1
93
+ 40 23 38 1
94
+ 41 24 39 1
95
+ 42 26 40 1
96
+ @<TRIPOS>SUBSTRUCTURE
97
+ 1 2D7 1
98
+
2byh/2byh_ligand.sdf ADDED
@@ -0,0 +1,86 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2byh_ligand
2
+ -I-interpret-
3
+
4
+ 39 41 0 0 0 0 0 0 0 0999 V2000
5
+ 5.6560 -2.4880 5.5440 O 0 0 0 0 0
6
+ 4.7820 -2.4710 6.3870 C 0 0 0 0 0
7
+ 3.9620 -3.6990 6.6910 C 0 0 0 0 0
8
+ 4.5170 -1.2360 7.1850 C 0 0 0 0 0
9
+ 3.5280 -1.2370 8.1690 C 0 0 0 0 0
10
+ 3.2570 -0.0870 8.9010 C 0 0 0 0 0
11
+ 5.2270 -0.0490 6.9600 C 0 0 0 0 0
12
+ 4.9460 1.0980 7.6980 C 0 0 0 0 0
13
+ 3.9150 1.1240 8.6270 C 0 0 0 0 0
14
+ 3.7560 2.2280 9.3850 N 0 0 0 0 0
15
+ 2.8530 2.5610 10.3120 C 0 0 0 0 0
16
+ 1.8700 1.8370 10.5490 O 0 0 0 0 0
17
+ 3.0700 3.7810 11.1680 C 0 0 0 0 0
18
+ 2.1150 4.6050 11.7260 C 0 0 0 0 0
19
+ 2.7820 5.4630 12.5070 N 0 0 0 0 0
20
+ 4.0790 5.2510 12.5160 N 0 0 0 0 0
21
+ 4.3160 4.1910 11.7700 C 0 0 0 0 0
22
+ 5.7090 3.6640 11.5610 C 0 0 0 0 0
23
+ 5.9130 2.3050 11.3540 C 0 0 0 0 0
24
+ 7.1660 1.8100 11.1080 C 0 0 0 0 0
25
+ 7.4110 0.0810 10.8860 Cl 0 0 0 0 0
26
+ 8.2720 2.6270 11.0890 C 0 0 0 0 0
27
+ 9.4540 2.0890 10.8230 O 0 0 0 0 0
28
+ 8.1150 3.9700 11.3270 C 0 0 0 0 0
29
+ 6.8420 4.5040 11.5730 C 0 0 0 0 0
30
+ 6.7700 5.8180 11.8090 O 0 0 0 0 0
31
+ 3.4356 -4.0150 5.7903 H 0 0 0 0 0
32
+ 4.6203 -4.4996 7.0284 H 0 0 0 0 0
33
+ 3.2393 -3.4672 7.4733 H 0 0 0 0 0
34
+ 2.9627 -2.1480 8.3655 H 0 0 0 0 0
35
+ 2.5199 -0.1252 9.7030 H 0 0 0 0 0
36
+ 6.0073 -0.0232 6.1994 H 0 0 0 0 0
37
+ 5.5478 1.9935 7.5430 H 0 0 0 0 0
38
+ 4.4603 2.9469 9.2188 H 0 0 0 0 0
39
+ 1.0378 4.5655 11.5641 H 0 0 0 0 0
40
+ 5.0633 1.6231 11.3879 H 0 0 0 0 0
41
+ 10.1275 2.7728 10.8439 H 0 0 0 0 0
42
+ 8.9858 4.6256 11.3247 H 0 0 0 0 0
43
+ 7.6510 6.1976 11.7710 H 0 0 0 0 0
44
+ 1 2 2 0 0 0
45
+ 2 3 1 0 0 0
46
+ 2 4 1 0 0 0
47
+ 4 5 4 0 0 0
48
+ 4 7 4 0 0 0
49
+ 5 6 4 0 0 0
50
+ 6 9 4 0 0 0
51
+ 7 8 4 0 0 0
52
+ 8 9 4 0 0 0
53
+ 9 10 1 0 0 0
54
+ 10 11 1 0 0 0
55
+ 11 12 2 0 0 0
56
+ 11 13 1 0 0 0
57
+ 13 14 4 0 0 0
58
+ 13 17 4 0 0 0
59
+ 14 15 4 0 0 0
60
+ 15 16 4 0 0 0
61
+ 16 17 4 0 0 0
62
+ 17 18 1 0 0 0
63
+ 18 19 4 0 0 0
64
+ 18 25 4 0 0 0
65
+ 19 20 4 0 0 0
66
+ 20 21 1 0 0 0
67
+ 20 22 4 0 0 0
68
+ 22 23 1 0 0 0
69
+ 22 24 4 0 0 0
70
+ 24 25 4 0 0 0
71
+ 25 26 1 0 0 0
72
+ 3 27 1 0 0 0
73
+ 3 28 1 0 0 0
74
+ 3 29 1 0 0 0
75
+ 5 30 1 0 0 0
76
+ 6 31 1 0 0 0
77
+ 7 32 1 0 0 0
78
+ 8 33 1 0 0 0
79
+ 10 34 1 0 0 0
80
+ 14 35 1 0 0 0
81
+ 19 36 1 0 0 0
82
+ 23 37 1 0 0 0
83
+ 24 38 1 0 0 0
84
+ 26 39 1 0 0 0
85
+ M END
86
+ $$$$
2byh/2byh_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2byh/2byh_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2hh5/2hh5_ligand.mol2 ADDED
@@ -0,0 +1,158 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:53 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 2hh5_ligand
7
+ 70 72 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 O5 14.6730 -1.1680 -4.4990 O.2 1 GNQ -0.1721
14
+ 2 S 14.4340 -2.2650 -5.3770 S.o2 1 GNQ -0.0172
15
+ 3 O4 13.3910 -2.1160 -6.3140 O.2 1 GNQ -0.1721
16
+ 4 C17 14.2960 -3.7040 -4.5030 C.3 1 GNQ 0.0995
17
+ 5 C18 13.1660 -3.6720 -3.5070 C.ar 1 GNQ -0.0221
18
+ 6 C20 11.9170 -4.2050 -3.8220 C.ar 1 GNQ -0.0588
19
+ 7 C21 10.8990 -4.1590 -2.8810 C.ar 1 GNQ -0.0685
20
+ 8 C22 11.1390 -3.5950 -1.6420 C.ar 1 GNQ -0.0687
21
+ 9 C23 12.3780 -3.0770 -1.3200 C.ar 1 GNQ -0.0685
22
+ 10 C19 13.4000 -3.1050 -2.2650 C.ar 1 GNQ -0.0588
23
+ 11 C16 15.8400 -2.4890 -6.3140 C.3 1 GNQ 0.1077
24
+ 12 CA 15.6420 -3.2530 -7.6340 C.3 1 GNQ 0.1505
25
+ 13 N 15.5470 -4.6770 -7.3600 N.am 1 GNQ -0.2501
26
+ 14 C11 15.2180 -5.4600 -8.3910 C.2 1 GNQ 0.2623
27
+ 15 O3 14.9720 -4.9440 -9.4720 O.2 1 GNQ -0.4005
28
+ 16 N3 15.1590 -6.7850 -8.3010 N.am 1 GNQ -0.2550
29
+ 17 C15 14.7600 -7.5830 -9.4650 C.3 1 GNQ 0.0577
30
+ 18 C14 15.6370 -8.8070 -9.5840 C.3 1 GNQ 0.0678
31
+ 19 O2 15.4990 -9.5630 -8.3880 O.3 1 GNQ -0.3758
32
+ 20 C13 16.0570 -8.8220 -7.2860 C.3 1 GNQ 0.0678
33
+ 21 C12 15.3570 -7.5040 -7.0510 C.3 1 GNQ 0.0577
34
+ 22 C 16.8260 -3.0280 -8.5700 C.2 1 GNQ 0.2033
35
+ 23 O 17.9360 -3.4500 -8.2840 O.2 1 GNQ -0.3945
36
+ 24 N2 16.5950 -2.3290 -9.7040 N.am 1 GNQ -0.2804
37
+ 25 C9 17.6370 -2.0440 -10.6530 C.3 1 GNQ 0.0582
38
+ 26 C10 17.9450 -3.2960 -11.4550 C.3 1 GNQ -0.0402
39
+ 27 C8 17.2050 -0.9100 -11.5950 C.3 1 GNQ 0.0444
40
+ 28 N1 16.5480 0.2570 -10.9340 N.pl3 1 GNQ -0.3265
41
+ 29 C7 16.0730 1.1760 -11.8060 C.ar 1 GNQ 0.0269
42
+ 30 C6 14.7270 1.5080 -11.8150 C.ar 1 GNQ -0.0526
43
+ 31 C5 14.2200 2.4400 -12.7070 C.ar 1 GNQ -0.0440
44
+ 32 C4 16.9100 1.7530 -12.7660 C.ar 1 GNQ -0.0526
45
+ 33 C3 16.3960 2.6880 -13.6650 C.ar 1 GNQ -0.0440
46
+ 34 C2 15.0300 3.0280 -13.6450 C.ar 1 GNQ 0.0869
47
+ 35 O1 14.4170 3.8990 -14.5290 O.3 1 GNQ -0.2348
48
+ 36 C1 15.0880 4.9340 -15.2010 C.3 1 GNQ 0.5439
49
+ 37 F1 15.8910 4.3830 -16.1210 F 1 GNQ -0.1403
50
+ 38 F2 14.1960 5.7470 -15.7220 F 1 GNQ -0.1403
51
+ 39 F3 15.7390 5.6490 -14.3110 F 1 GNQ -0.1403
52
+ 40 H1 15.2375 -3.8789 -3.9618 H 1 GNQ 0.0663
53
+ 41 H2 14.1200 -4.5292 -5.2088 H 1 GNQ 0.0663
54
+ 42 H3 11.7428 -4.6517 -4.7942 H 1 GNQ 0.0557
55
+ 43 H4 9.9209 -4.5630 -3.1158 H 1 GNQ 0.0599
56
+ 44 H5 10.3403 -3.5587 -0.9100 H 1 GNQ 0.0559
57
+ 45 H6 12.5535 -2.6517 -0.3385 H 1 GNQ 0.0599
58
+ 46 H7 14.3719 -2.6861 -2.0305 H 1 GNQ 0.0557
59
+ 47 H8 16.5673 -3.0467 -5.7057 H 1 GNQ 0.0550
60
+ 48 H9 16.2482 -1.4964 -6.5551 H 1 GNQ 0.0550
61
+ 49 H10 14.7183 -2.9051 -8.1195 H 1 GNQ 0.0814
62
+ 50 H11 15.7187 -5.0507 -6.4485 H 1 GNQ 0.1878
63
+ 51 H12 14.8612 -6.9737 -10.3752 H 1 GNQ 0.0542
64
+ 52 H13 13.7122 -7.8968 -9.3485 H 1 GNQ 0.0542
65
+ 53 H14 16.6861 -8.5035 -9.7150 H 1 GNQ 0.0580
66
+ 54 H15 15.3197 -9.4114 -10.4465 H 1 GNQ 0.0580
67
+ 55 H16 17.1180 -8.6233 -7.4977 H 1 GNQ 0.0580
68
+ 56 H17 15.9729 -9.4317 -6.3743 H 1 GNQ 0.0580
69
+ 57 H18 14.3779 -7.6950 -6.5876 H 1 GNQ 0.0542
70
+ 58 H19 15.9686 -6.8880 -6.3753 H 1 GNQ 0.0542
71
+ 59 H20 15.6691 -1.9994 -9.8888 H 1 GNQ 0.1855
72
+ 60 H21 18.5415 -1.7321 -10.1103 H 1 GNQ 0.0572
73
+ 61 H22 18.7421 -3.0792 -12.1814 H 1 GNQ 0.0252
74
+ 62 H23 17.0402 -3.6209 -11.9896 H 1 GNQ 0.0252
75
+ 63 H24 18.2759 -4.0949 -10.7751 H 1 GNQ 0.0252
76
+ 64 H25 16.4980 -1.3276 -12.3269 H 1 GNQ 0.0529
77
+ 65 H26 18.1006 -0.5437 -12.1181 H 1 GNQ 0.0529
78
+ 66 H27 16.4645 0.3531 -9.9119 H 1 GNQ 0.1723
79
+ 67 H28 14.0573 1.0289 -11.1100 H 1 GNQ 0.0489
80
+ 68 H29 13.1705 2.7075 -12.6628 H 1 GNQ 0.0511
81
+ 69 H30 17.9566 1.4743 -12.8117 H 1 GNQ 0.0489
82
+ 70 H31 17.0552 3.1574 -14.3862 H 1 GNQ 0.0511
83
+ @<TRIPOS>BOND
84
+ 1 1 2 2
85
+ 2 2 3 2
86
+ 3 2 4 1
87
+ 4 2 11 1
88
+ 5 4 5 1
89
+ 6 5 6 ar
90
+ 7 5 10 ar
91
+ 8 6 7 ar
92
+ 9 7 8 ar
93
+ 10 8 9 ar
94
+ 11 9 10 ar
95
+ 12 11 12 1
96
+ 13 12 13 1
97
+ 14 12 22 1
98
+ 15 13 14 am
99
+ 16 14 15 2
100
+ 17 14 16 am
101
+ 18 16 17 1
102
+ 19 16 21 1
103
+ 20 17 18 1
104
+ 21 18 19 1
105
+ 22 19 20 1
106
+ 23 20 21 1
107
+ 24 22 23 2
108
+ 25 22 24 am
109
+ 26 24 25 1
110
+ 27 25 26 1
111
+ 28 25 27 1
112
+ 29 27 28 1
113
+ 30 28 29 1
114
+ 31 29 30 ar
115
+ 32 29 32 ar
116
+ 33 30 31 ar
117
+ 34 31 34 ar
118
+ 35 32 33 ar
119
+ 36 33 34 ar
120
+ 37 34 35 1
121
+ 38 35 36 1
122
+ 39 36 37 1
123
+ 40 36 38 1
124
+ 41 36 39 1
125
+ 42 4 40 1
126
+ 43 4 41 1
127
+ 44 6 42 1
128
+ 45 7 43 1
129
+ 46 8 44 1
130
+ 47 9 45 1
131
+ 48 10 46 1
132
+ 49 11 47 1
133
+ 50 11 48 1
134
+ 51 12 49 1
135
+ 52 13 50 1
136
+ 53 17 51 1
137
+ 54 17 52 1
138
+ 55 18 53 1
139
+ 56 18 54 1
140
+ 57 20 55 1
141
+ 58 20 56 1
142
+ 59 21 57 1
143
+ 60 21 58 1
144
+ 61 24 59 1
145
+ 62 25 60 1
146
+ 63 26 61 1
147
+ 64 26 62 1
148
+ 65 26 63 1
149
+ 66 27 64 1
150
+ 67 27 65 1
151
+ 68 28 66 1
152
+ 69 30 67 1
153
+ 70 31 68 1
154
+ 71 32 69 1
155
+ 72 33 70 1
156
+ @<TRIPOS>SUBSTRUCTURE
157
+ 1 GNQ 1
158
+
2hh5/2hh5_ligand.sdf ADDED
@@ -0,0 +1,148 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2hh5_ligand
2
+ -I-interpret-
3
+
4
+ 70 72 0 0 0 0 0 0 0 0999 V2000
5
+ 14.6730 -1.1680 -4.4990 O 0 0 0 0 0
6
+ 14.4340 -2.2650 -5.3770 S 0 0 0 0 0
7
+ 13.3910 -2.1160 -6.3140 O 0 0 0 0 0
8
+ 14.2960 -3.7040 -4.5030 C 0 0 0 0 0
9
+ 13.1660 -3.6720 -3.5070 C 0 0 0 0 0
10
+ 11.9170 -4.2050 -3.8220 C 0 0 0 0 0
11
+ 10.8990 -4.1590 -2.8810 C 0 0 0 0 0
12
+ 11.1390 -3.5950 -1.6420 C 0 0 0 0 0
13
+ 12.3780 -3.0770 -1.3200 C 0 0 0 0 0
14
+ 13.4000 -3.1050 -2.2650 C 0 0 0 0 0
15
+ 15.8400 -2.4890 -6.3140 C 0 0 0 0 0
16
+ 15.6420 -3.2530 -7.6340 C 0 0 0 0 0
17
+ 15.5470 -4.6770 -7.3600 N 0 0 0 0 0
18
+ 15.2180 -5.4600 -8.3910 C 0 0 0 0 0
19
+ 14.9720 -4.9440 -9.4720 O 0 0 0 0 0
20
+ 15.1590 -6.7850 -8.3010 N 0 0 0 0 0
21
+ 14.7600 -7.5830 -9.4650 C 0 0 0 0 0
22
+ 15.6370 -8.8070 -9.5840 C 0 0 0 0 0
23
+ 15.4990 -9.5630 -8.3880 O 0 0 0 0 0
24
+ 16.0570 -8.8220 -7.2860 C 0 0 0 0 0
25
+ 15.3570 -7.5040 -7.0510 C 0 0 0 0 0
26
+ 16.8260 -3.0280 -8.5700 C 0 0 0 0 0
27
+ 17.9360 -3.4500 -8.2840 O 0 0 0 0 0
28
+ 16.5950 -2.3290 -9.7040 N 0 0 0 0 0
29
+ 17.6370 -2.0440 -10.6530 C 0 0 0 0 0
30
+ 17.9450 -3.2960 -11.4550 C 0 0 0 0 0
31
+ 17.2050 -0.9100 -11.5950 C 0 0 0 0 0
32
+ 16.5480 0.2570 -10.9340 N 0 0 0 0 0
33
+ 16.0730 1.1760 -11.8060 C 0 0 0 0 0
34
+ 14.7270 1.5080 -11.8150 C 0 0 0 0 0
35
+ 14.2200 2.4400 -12.7070 C 0 0 0 0 0
36
+ 16.9100 1.7530 -12.7660 C 0 0 0 0 0
37
+ 16.3960 2.6880 -13.6650 C 0 0 0 0 0
38
+ 15.0300 3.0280 -13.6450 C 0 0 0 0 0
39
+ 14.4170 3.8990 -14.5290 O 0 0 0 0 0
40
+ 15.0880 4.9340 -15.2010 C 0 0 0 0 0
41
+ 15.8910 4.3830 -16.1210 F 0 0 0 0 0
42
+ 14.1960 5.7470 -15.7220 F 0 0 0 0 0
43
+ 15.7390 5.6490 -14.3110 F 0 0 0 0 0
44
+ 15.2246 -3.8515 -3.9516 H 0 0 0 0 0
45
+ 14.0959 -4.5082 -5.2110 H 0 0 0 0 0
46
+ 11.7418 -4.6541 -4.7996 H 0 0 0 0 0
47
+ 9.9155 -4.5652 -3.1171 H 0 0 0 0 0
48
+ 10.3359 -3.5585 -0.9059 H 0 0 0 0 0
49
+ 12.5545 -2.6493 -0.3331 H 0 0 0 0 0
50
+ 14.3773 -2.6838 -2.0292 H 0 0 0 0 0
51
+ 16.5235 -3.0856 -5.7099 H 0 0 0 0 0
52
+ 16.1960 -1.4942 -6.5818 H 0 0 0 0 0
53
+ 14.7294 -2.8880 -8.1053 H 0 0 0 0 0
54
+ 15.7222 -5.0582 -6.4302 H 0 0 0 0 0
55
+ 14.8672 -6.9785 -10.3656 H 0 0 0 0 0
56
+ 13.7234 -7.8973 -9.3436 H 0 0 0 0 0
57
+ 16.6770 -8.5132 -9.7264 H 0 0 0 0 0
58
+ 15.3357 -9.4044 -10.4445 H 0 0 0 0 0
59
+ 17.0995 -8.6084 -7.5218 H 0 0 0 0 0
60
+ 15.9418 -9.4258 -6.3859 H 0 0 0 0 0
61
+ 14.3825 -7.7016 -6.6044 H 0 0 0 0 0
62
+ 15.9747 -6.8939 -6.3920 H 0 0 0 0 0
63
+ 15.6506 -1.9928 -9.8925 H 0 0 0 0 0
64
+ 18.5315 -1.7270 -10.1168 H 0 0 0 0 0
65
+ 18.2727 -4.0868 -10.7802 H 0 0 0 0 0
66
+ 17.0477 -3.6169 -11.9841 H 0 0 0 0 0
67
+ 18.7349 -3.0800 -12.1744 H 0 0 0 0 0
68
+ 16.4694 -1.3357 -12.2775 H 0 0 0 0 0
69
+ 18.1136 -0.5314 -12.0633 H 0 0 0 0 0
70
+ 16.4653 0.3521 -9.9218 H 0 0 0 0 0
71
+ 14.0536 1.0262 -11.1061 H 0 0 0 0 0
72
+ 13.1646 2.7090 -12.6625 H 0 0 0 0 0
73
+ 17.9624 1.4728 -12.8120 H 0 0 0 0 0
74
+ 17.0588 3.1600 -14.3902 H 0 0 0 0 0
75
+ 1 2 2 0 0 0
76
+ 2 3 2 0 0 0
77
+ 2 4 1 0 0 0
78
+ 2 11 1 0 0 0
79
+ 4 5 1 0 0 0
80
+ 5 6 4 0 0 0
81
+ 5 10 4 0 0 0
82
+ 6 7 4 0 0 0
83
+ 7 8 4 0 0 0
84
+ 8 9 4 0 0 0
85
+ 9 10 4 0 0 0
86
+ 11 12 1 0 0 0
87
+ 12 13 1 0 0 0
88
+ 12 22 1 0 0 0
89
+ 13 14 1 0 0 0
90
+ 14 15 2 0 0 0
91
+ 14 16 1 0 0 0
92
+ 16 17 1 0 0 0
93
+ 16 21 1 0 0 0
94
+ 17 18 1 0 0 0
95
+ 18 19 1 0 0 0
96
+ 19 20 1 0 0 0
97
+ 20 21 1 0 0 0
98
+ 22 23 2 0 0 0
99
+ 22 24 1 0 0 0
100
+ 24 25 1 0 0 0
101
+ 25 26 1 0 0 0
102
+ 25 27 1 0 0 0
103
+ 27 28 1 0 0 0
104
+ 28 29 1 0 0 0
105
+ 29 30 4 0 0 0
106
+ 29 32 4 0 0 0
107
+ 30 31 4 0 0 0
108
+ 31 34 4 0 0 0
109
+ 32 33 4 0 0 0
110
+ 33 34 4 0 0 0
111
+ 34 35 1 0 0 0
112
+ 35 36 1 0 0 0
113
+ 36 37 1 0 0 0
114
+ 36 38 1 0 0 0
115
+ 36 39 1 0 0 0
116
+ 4 40 1 0 0 0
117
+ 4 41 1 0 0 0
118
+ 6 42 1 0 0 0
119
+ 7 43 1 0 0 0
120
+ 8 44 1 0 0 0
121
+ 9 45 1 0 0 0
122
+ 10 46 1 0 0 0
123
+ 11 47 1 0 0 0
124
+ 11 48 1 0 0 0
125
+ 12 49 1 0 0 0
126
+ 13 50 1 0 0 0
127
+ 17 51 1 0 0 0
128
+ 17 52 1 0 0 0
129
+ 18 53 1 0 0 0
130
+ 18 54 1 0 0 0
131
+ 20 55 1 0 0 0
132
+ 20 56 1 0 0 0
133
+ 21 57 1 0 0 0
134
+ 21 58 1 0 0 0
135
+ 24 59 1 0 0 0
136
+ 25 60 1 0 0 0
137
+ 26 61 1 0 0 0
138
+ 26 62 1 0 0 0
139
+ 26 63 1 0 0 0
140
+ 27 64 1 0 0 0
141
+ 27 65 1 0 0 0
142
+ 28 66 1 0 0 0
143
+ 30 67 1 0 0 0
144
+ 31 68 1 0 0 0
145
+ 32 69 1 0 0 0
146
+ 33 70 1 0 0 0
147
+ M END
148
+ $$$$
2hh5/2hh5_protein_esmfold_aligned_tr_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2hh5/2hh5_protein_processed_fix.pdb ADDED
The diff for this file is too large to render. See raw diff
 
2hzi/2hzi_ligand.mol2 ADDED
@@ -0,0 +1,107 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ###
2
+ ### Created by X-TOOL on Mon Sep 10 21:12:55 2018
3
+ ###
4
+
5
+ @<TRIPOS>MOLECULE
6
+ 2hzi_ligand
7
+ 44 47 1 0 0
8
+ SMALL
9
+ GAST_HUCK
10
+
11
+
12
+ @<TRIPOS>ATOM
13
+ 1 C10 18.7180 14.5070 3.5840 C.2 1 JIN -0.0306
14
+ 2 C12 17.6050 16.1330 4.9300 C.2 1 JIN 0.2279
15
+ 3 C13 15.1530 16.0020 5.3110 C.3 1 JIN 0.0547
16
+ 4 C15 22.0520 16.8670 5.8630 C.ar 1 JIN -0.0503
17
+ 5 C16 22.4560 17.8380 4.9110 C.ar 1 JIN -0.0636
18
+ 6 C19 20.1290 16.3200 4.5030 C.ar 1 JIN 0.0100
19
+ 7 C20 20.8670 16.1450 5.6450 C.ar 1 JIN 0.0446
20
+ 8 C27 12.7210 12.4780 3.1580 C.ar 1 JIN 0.0564
21
+ 9 C30 9.9420 13.0810 3.6230 C.ar 1 JIN 0.1208
22
+ 10 C31 10.9270 13.7090 4.3430 C.ar 1 JIN -0.0438
23
+ 11 C34 9.2220 11.4610 1.9550 C.3 1 JIN -0.0328
24
+ 12 F35 8.6710 13.3630 3.8870 F 1 JIN -0.1983
25
+ 13 C29 10.3390 12.1550 2.6880 C.ar 1 JIN -0.0214
26
+ 14 C28 11.6930 11.7860 2.4860 C.ar 1 JIN -0.0382
27
+ 15 C26 12.2820 13.4030 4.1210 C.ar 1 JIN -0.0460
28
+ 16 N08 13.9880 12.0550 2.8670 N.pl3 1 JIN -0.2461
29
+ 17 C04 15.1360 12.7130 3.0870 C.ar 1 JIN 0.1969
30
+ 18 N03 16.1630 12.1260 2.5210 N.ar 1 JIN -0.2619
31
+ 19 C02 17.3840 12.6850 2.6400 C.ar 1 JIN 0.0170
32
+ 20 N05 15.1830 13.8300 3.8310 N.ar 1 JIN -0.2310
33
+ 21 C06 16.3920 14.4070 3.9860 C.ar 1 JIN 0.1654
34
+ 22 N11 16.4410 15.4940 4.7440 N.am 1 JIN -0.1971
35
+ 23 O14 17.5860 17.1530 5.6210 O.2 1 JIN -0.3929
36
+ 24 C09 18.7910 15.6810 4.3350 C.2 1 JIN 0.0552
37
+ 25 C01 17.5060 13.8530 3.4140 C.ar 1 JIN 0.0514
38
+ 26 C18 20.5380 17.2630 3.5440 C.ar 1 JIN 0.0446
39
+ 27 C17 21.7110 18.0230 3.7110 C.ar 1 JIN -0.0503
40
+ 28 CL4 19.6970 17.5810 2.0470 Cl 1 JIN -0.0720
41
+ 29 CL5 20.3770 14.9170 6.8500 Cl 1 JIN -0.0720
42
+ 30 H1 19.6195 14.1008 3.1277 H 1 JIN 0.0728
43
+ 31 H2 15.3471 16.9017 5.9134 H 1 JIN 0.0583
44
+ 32 H3 14.7006 15.2261 5.9461 H 1 JIN 0.0583
45
+ 33 H4 14.4643 16.2518 4.4904 H 1 JIN 0.0583
46
+ 34 H5 22.6506 16.6844 6.7481 H 1 JIN 0.0617
47
+ 35 H6 23.3363 18.4424 5.0977 H 1 JIN 0.0594
48
+ 36 H7 10.6585 14.4476 5.0896 H 1 JIN 0.0559
49
+ 37 H8 9.6451 10.7452 1.2349 H 1 JIN 0.0381
50
+ 38 H9 8.6167 12.2064 1.4184 H 1 JIN 0.0381
51
+ 39 H10 8.5881 10.9242 2.6761 H 1 JIN 0.0381
52
+ 40 H11 11.9379 10.9712 1.8143 H 1 JIN 0.0466
53
+ 41 H12 13.0275 13.9076 4.7249 H 1 JIN 0.0474
54
+ 42 H13 14.0704 11.1262 2.4294 H 1 JIN 0.2187
55
+ 43 H14 18.2475 12.2466 2.1528 H 1 JIN 0.0898
56
+ 44 H15 22.0364 18.7253 2.9521 H 1 JIN 0.0617
57
+ @<TRIPOS>BOND
58
+ 1 1 24 2
59
+ 2 25 1 1
60
+ 3 2 22 am
61
+ 4 2 23 2
62
+ 5 24 2 1
63
+ 6 22 3 1
64
+ 7 4 5 ar
65
+ 8 7 4 ar
66
+ 9 5 27 ar
67
+ 10 6 7 ar
68
+ 11 24 6 1
69
+ 12 6 26 ar
70
+ 13 7 29 1
71
+ 14 8 14 ar
72
+ 15 8 15 ar
73
+ 16 16 8 1
74
+ 17 10 9 ar
75
+ 18 9 12 1
76
+ 19 13 9 ar
77
+ 20 15 10 ar
78
+ 21 13 11 1
79
+ 22 14 13 ar
80
+ 23 17 16 1
81
+ 24 18 17 ar
82
+ 25 17 20 ar
83
+ 26 19 18 ar
84
+ 27 19 25 ar
85
+ 28 20 21 ar
86
+ 29 21 22 1
87
+ 30 21 25 ar
88
+ 31 26 27 ar
89
+ 32 26 28 1
90
+ 33 1 30 1
91
+ 34 3 31 1
92
+ 35 3 32 1
93
+ 36 3 33 1
94
+ 37 4 34 1
95
+ 38 5 35 1
96
+ 39 10 36 1
97
+ 40 11 37 1
98
+ 41 11 38 1
99
+ 42 11 39 1
100
+ 43 14 40 1
101
+ 44 15 41 1
102
+ 45 16 42 1
103
+ 46 19 43 1
104
+ 47 27 44 1
105
+ @<TRIPOS>SUBSTRUCTURE
106
+ 1 JIN 1
107
+
2hzi/2hzi_ligand.sdf ADDED
@@ -0,0 +1,97 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2hzi_ligand
2
+ -I-interpret-
3
+
4
+ 44 47 0 0 0 0 0 0 0 0999 V2000
5
+ 18.7180 14.5070 3.5840 C 0 0 0 0 0
6
+ 17.6050 16.1330 4.9300 C 0 0 0 0 0
7
+ 15.1530 16.0020 5.3110 C 0 0 0 0 0
8
+ 22.0520 16.8670 5.8630 C 0 0 0 0 0
9
+ 22.4560 17.8380 4.9110 C 0 0 0 0 0
10
+ 20.1290 16.3200 4.5030 C 0 0 0 0 0
11
+ 20.8670 16.1450 5.6450 C 0 0 0 0 0
12
+ 12.7210 12.4780 3.1580 C 0 0 0 0 0
13
+ 9.9420 13.0810 3.6230 C 0 0 0 0 0
14
+ 10.9270 13.7090 4.3430 C 0 0 0 0 0
15
+ 9.2220 11.4610 1.9550 C 0 0 0 0 0
16
+ 8.6710 13.3630 3.8870 F 0 0 0 0 0
17
+ 10.3390 12.1550 2.6880 C 0 0 0 0 0
18
+ 11.6930 11.7860 2.4860 C 0 0 0 0 0
19
+ 12.2820 13.4030 4.1210 C 0 0 0 0 0
20
+ 13.9880 12.0550 2.8670 N 0 0 0 0 0
21
+ 15.1360 12.7130 3.0870 C 0 0 0 0 0
22
+ 16.1630 12.1260 2.5210 N 0 0 0 0 0
23
+ 17.3840 12.6850 2.6400 C 0 0 0 0 0
24
+ 15.1830 13.8300 3.8310 N 0 0 0 0 0
25
+ 16.3920 14.4070 3.9860 C 0 0 0 0 0
26
+ 16.4410 15.4940 4.7440 N 0 0 0 0 0
27
+ 17.5860 17.1530 5.6210 O 0 0 0 0 0
28
+ 18.7910 15.6810 4.3350 C 0 0 0 0 0
29
+ 17.5060 13.8530 3.4140 C 0 0 0 0 0
30
+ 20.5380 17.2630 3.5440 C 0 0 0 0 0
31
+ 21.7110 18.0230 3.7110 C 0 0 0 0 0
32
+ 19.6970 17.5810 2.0470 Cl 0 0 0 0 0
33
+ 20.3770 14.9170 6.8500 Cl 0 0 0 0 0
34
+ 19.6203 14.1005 3.1273 H 0 0 0 0 0
35
+ 14.4715 16.2491 4.4970 H 0 0 0 0 0
36
+ 14.7057 15.2323 5.9400 H 0 0 0 0 0
37
+ 15.3467 16.8934 5.9077 H 0 0 0 0 0
38
+ 22.6539 16.6834 6.7530 H 0 0 0 0 0
39
+ 23.3412 18.4458 5.0987 H 0 0 0 0 0
40
+ 10.6571 14.4517 5.0938 H 0 0 0 0 0
41
+ 8.5946 10.9296 2.6706 H 0 0 0 0 0
42
+ 8.6230 12.2007 1.4238 H 0 0 0 0 0
43
+ 9.6425 10.7520 1.2418 H 0 0 0 0 0
44
+ 11.9392 10.9667 1.8106 H 0 0 0 0 0
45
+ 13.0316 13.9104 4.7283 H 0 0 0 0 0
46
+ 14.0696 11.1352 2.4337 H 0 0 0 0 0
47
+ 18.2522 12.2442 2.1502 H 0 0 0 0 0
48
+ 22.0382 18.7292 2.9479 H 0 0 0 0 0
49
+ 1 24 2 0 0 0
50
+ 25 1 1 0 0 0
51
+ 2 22 1 0 0 0
52
+ 2 23 2 0 0 0
53
+ 24 2 1 0 0 0
54
+ 22 3 1 0 0 0
55
+ 4 5 4 0 0 0
56
+ 7 4 4 0 0 0
57
+ 5 27 4 0 0 0
58
+ 6 7 4 0 0 0
59
+ 24 6 1 0 0 0
60
+ 6 26 4 0 0 0
61
+ 7 29 1 0 0 0
62
+ 8 14 4 0 0 0
63
+ 8 15 4 0 0 0
64
+ 16 8 1 0 0 0
65
+ 10 9 4 0 0 0
66
+ 9 12 1 0 0 0
67
+ 13 9 4 0 0 0
68
+ 15 10 4 0 0 0
69
+ 13 11 1 0 0 0
70
+ 14 13 4 0 0 0
71
+ 17 16 1 0 0 0
72
+ 18 17 4 0 0 0
73
+ 17 20 4 0 0 0
74
+ 19 18 4 0 0 0
75
+ 19 25 4 0 0 0
76
+ 20 21 4 0 0 0
77
+ 21 22 1 0 0 0
78
+ 21 25 4 0 0 0
79
+ 26 27 4 0 0 0
80
+ 26 28 1 0 0 0
81
+ 1 30 1 0 0 0
82
+ 3 31 1 0 0 0
83
+ 3 32 1 0 0 0
84
+ 3 33 1 0 0 0
85
+ 4 34 1 0 0 0
86
+ 5 35 1 0 0 0
87
+ 10 36 1 0 0 0
88
+ 11 37 1 0 0 0
89
+ 11 38 1 0 0 0
90
+ 11 39 1 0 0 0
91
+ 14 40 1 0 0 0
92
+ 15 41 1 0 0 0
93
+ 16 42 1 0 0 0
94
+ 19 43 1 0 0 0
95
+ 27 44 1 0 0 0
96
+ M END
97
+ $$$$