Add batch 69
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1fta/1fta_ligand.mol2 +88 -0
- 1fta/1fta_ligand.sdf +82 -0
- 1fta/1fta_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1fta/1fta_protein_processed_fix.pdb +0 -0
- 1h8s/1h8s_ligand.mol2 +104 -0
- 1h8s/1h8s_ligand.sdf +96 -0
- 1h8s/1h8s_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1h8s/1h8s_protein_processed_fix.pdb +0 -0
- 1i8j/1i8j_ligand.mol2 +75 -0
- 1i8j/1i8j_ligand.sdf +69 -0
- 1i8j/1i8j_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1i8j/1i8j_protein_processed_fix.pdb +0 -0
- 1ie9/1ie9_ligand.mol2 +166 -0
- 1ie9/1ie9_ligand.sdf +156 -0
- 1ie9/1ie9_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ie9/1ie9_protein_processed_fix.pdb +0 -0
- 1k1n/1k1n_ligand.mol2 +180 -0
- 1k1n/1k1n_ligand.sdf +170 -0
- 1k1n/1k1n_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1k1n/1k1n_protein_processed_fix.pdb +0 -0
- 1lf2/1lf2_ligand.mol2 +178 -0
- 1lf2/1lf2_ligand.sdf +168 -0
- 1lf2/1lf2_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1lf2/1lf2_protein_processed_fix.pdb +0 -0
- 1mm7/1mm7_ligand.mol2 +56 -0
- 1mm7/1mm7_ligand.sdf +48 -0
- 1mm7/1mm7_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1mm7/1mm7_protein_processed_fix.pdb +0 -0
- 1tok/1tok_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1tok/1tok_protein_processed_fix.pdb +0 -0
- 1u9e/1u9e_ligand.mol2 +72 -0
- 1u9e/1u9e_ligand.sdf +62 -0
- 1u9e/1u9e_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1u9e/1u9e_protein_processed_fix.pdb +0 -0
- 2baj/2baj_ligand.mol2 +112 -0
- 2baj/2baj_ligand.sdf +102 -0
- 2baj/2baj_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2baj/2baj_protein_processed_fix.pdb +0 -0
- 2f80/2f80_ligand.mol2 +169 -0
- 2f80/2f80_ligand.sdf +159 -0
- 2f80/2f80_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2f80/2f80_protein_processed_fix.pdb +0 -0
- 2iit/2iit_ligand.mol2 +113 -0
- 2iit/2iit_ligand.sdf +103 -0
- 2iit/2iit_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2iit/2iit_protein_processed_fix.pdb +0 -0
- 2oa0/2oa0_ligand.mol2 +110 -0
- 2oa0/2oa0_ligand.sdf +98 -0
- 2oa0/2oa0_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2oa0/2oa0_protein_processed_fix.pdb +0 -0
1fta/1fta_ligand.mol2
ADDED
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@@ -0,0 +1,88 @@
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| 1 |
+
###
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### Created by X-TOOL on Mon Sep 10 21:12:45 2018
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###
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@<TRIPOS>MOLECULE
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1fta_ligand
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35 37 1 0 0
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| 8 |
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SMALL
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| 9 |
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GAST_HUCK
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| 10 |
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| 11 |
+
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| 12 |
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@<TRIPOS>ATOM
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| 13 |
+
1 P 14.6600 60.0770 16.7220 P.3 1 AMP 0.2008
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| 14 |
+
2 O1P 14.1710 59.3310 15.5260 O.co2 1 AMP -0.5537
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| 15 |
+
3 O2P 13.7400 61.2400 16.9390 O.co2 1 AMP -0.5537
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| 16 |
+
4 O3P 14.5240 59.1690 17.9490 O.co2 1 AMP -0.5537
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| 17 |
+
5 O5' 16.1470 60.5340 16.5300 O.3 1 AMP -0.2734
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| 18 |
+
6 C5' 16.4080 61.6450 15.6150 C.3 1 AMP 0.1072
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| 19 |
+
7 C4' 17.8510 61.7280 15.5580 C.3 1 AMP 0.1182
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| 20 |
+
8 O4' 18.3840 61.8870 16.8940 O.3 1 AMP -0.3365
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| 21 |
+
9 C3' 18.4340 60.4150 15.0070 C.3 1 AMP 0.1149
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| 22 |
+
10 O3' 18.7420 60.4570 13.6240 O.3 1 AMP -0.3864
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| 23 |
+
11 C2' 19.6440 60.1380 15.9060 C.3 1 AMP 0.1385
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| 24 |
+
12 O2' 20.8820 60.4040 15.2610 O.3 1 AMP -0.3836
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| 25 |
+
13 C1' 19.4190 60.9940 17.1840 C.3 1 AMP 0.2010
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| 26 |
+
14 N9 19.0940 60.1790 18.4260 N.pl3 1 AMP -0.1919
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| 27 |
+
15 C8 17.8710 59.6220 18.7140 C.2 1 AMP 0.1123
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| 28 |
+
16 N7 17.9640 58.6650 19.6930 N.2 1 AMP -0.2958
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| 29 |
+
17 C5 19.3050 58.5690 19.9340 C.ar 1 AMP 0.1045
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| 30 |
+
18 C6 19.9530 57.5990 20.7210 C.ar 1 AMP 0.1298
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| 31 |
+
19 N6 19.3060 56.8340 21.5720 N.pl3 1 AMP -0.3152
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| 32 |
+
20 N1 21.3100 57.7680 20.7990 N.ar 1 AMP -0.2698
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| 33 |
+
21 C2 21.9470 58.4600 19.7950 C.ar 1 AMP 0.0533
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| 34 |
+
22 N3 21.3370 59.4330 19.0610 N.ar 1 AMP -0.2714
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| 35 |
+
23 C4 19.9900 59.3740 19.0450 C.ar 1 AMP 0.1613
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| 36 |
+
24 H1 15.9788 62.5799 16.0045 H 1 AMP 0.0639
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| 37 |
+
25 H2 15.9899 61.4364 14.6192 H 1 AMP 0.0639
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| 38 |
+
26 H3 18.1491 62.5750 14.9226 H 1 AMP 0.0650
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| 39 |
+
27 H4 17.6957 59.6117 15.1469 H 1 AMP 0.0648
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| 40 |
+
28 H5 19.3842 61.1386 13.4643 H 1 AMP 0.2100
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| 41 |
+
29 H6 19.6423 59.0746 16.1875 H 1 AMP 0.0676
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| 42 |
+
30 H7 20.9607 59.8543 14.4902 H 1 AMP 0.2101
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| 43 |
+
31 H8 20.3384 61.5622 17.3886 H 1 AMP 0.0996
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| 44 |
+
32 H9 16.9406 59.9058 18.2244 H 1 AMP 0.1349
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| 45 |
+
33 H10 19.8184 56.1357 22.1294 H 1 AMP 0.1820
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| 46 |
+
34 H11 18.2866 56.9329 21.6814 H 1 AMP 0.1820
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| 47 |
+
35 H12 22.9816 58.2204 19.5777 H 1 AMP 0.0996
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| 48 |
+
@<TRIPOS>BOND
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| 49 |
+
1 1 2 ar
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| 50 |
+
2 1 3 ar
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| 51 |
+
3 1 4 ar
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| 52 |
+
4 1 5 1
|
| 53 |
+
5 5 6 1
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| 54 |
+
6 6 7 1
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| 55 |
+
7 7 8 1
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| 56 |
+
8 7 9 1
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| 57 |
+
9 8 13 1
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| 58 |
+
10 9 10 1
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| 59 |
+
11 9 11 1
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| 60 |
+
12 11 12 1
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| 61 |
+
13 11 13 1
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| 62 |
+
14 13 14 1
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| 63 |
+
15 14 15 1
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| 64 |
+
16 14 23 1
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| 65 |
+
17 15 16 2
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| 66 |
+
18 16 17 1
|
| 67 |
+
19 17 18 ar
|
| 68 |
+
20 17 23 ar
|
| 69 |
+
21 18 19 1
|
| 70 |
+
22 18 20 ar
|
| 71 |
+
23 20 21 ar
|
| 72 |
+
24 21 22 ar
|
| 73 |
+
25 22 23 ar
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| 74 |
+
26 6 24 1
|
| 75 |
+
27 6 25 1
|
| 76 |
+
28 7 26 1
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| 77 |
+
29 9 27 1
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| 78 |
+
30 10 28 1
|
| 79 |
+
31 11 29 1
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| 80 |
+
32 12 30 1
|
| 81 |
+
33 13 31 1
|
| 82 |
+
34 15 32 1
|
| 83 |
+
35 19 33 1
|
| 84 |
+
36 19 34 1
|
| 85 |
+
37 21 35 1
|
| 86 |
+
@<TRIPOS>SUBSTRUCTURE
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| 87 |
+
1 AMP 1
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| 88 |
+
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1fta/1fta_ligand.sdf
ADDED
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@@ -0,0 +1,82 @@
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| 1 |
+
1fta_ligand
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| 2 |
+
-I-interpret-
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| 3 |
+
|
| 4 |
+
37 39 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
14.6600 60.0770 16.7220 P 0 0 0 0 0
|
| 6 |
+
14.1710 59.3310 15.5260 O 0 0 0 0 0
|
| 7 |
+
13.7400 61.2400 16.9390 O 0 0 0 0 0
|
| 8 |
+
14.5240 59.1690 17.9490 O 0 0 0 0 0
|
| 9 |
+
16.1470 60.5340 16.5300 O 0 0 0 0 0
|
| 10 |
+
16.4080 61.6450 15.6150 C 0 0 0 0 0
|
| 11 |
+
17.8510 61.7280 15.5580 C 0 0 0 0 0
|
| 12 |
+
18.3840 61.8870 16.8940 O 0 0 0 0 0
|
| 13 |
+
18.4340 60.4150 15.0070 C 0 0 0 0 0
|
| 14 |
+
18.7420 60.4570 13.6240 O 0 0 0 0 0
|
| 15 |
+
19.6440 60.1380 15.9060 C 0 0 0 0 0
|
| 16 |
+
20.8820 60.4040 15.2610 O 0 0 0 0 0
|
| 17 |
+
19.4190 60.9940 17.1840 C 0 0 0 0 0
|
| 18 |
+
19.0940 60.1790 18.4260 N 0 0 0 0 0
|
| 19 |
+
17.8710 59.6220 18.7140 C 0 0 0 0 0
|
| 20 |
+
17.9640 58.6650 19.6930 N 0 0 0 0 0
|
| 21 |
+
19.3050 58.5690 19.9340 C 0 0 0 0 0
|
| 22 |
+
19.9530 57.5990 20.7210 C 0 0 0 0 0
|
| 23 |
+
19.3060 56.8340 21.5720 N 0 0 0 0 0
|
| 24 |
+
21.3100 57.7680 20.7990 N 0 0 0 0 0
|
| 25 |
+
21.9470 58.4600 19.7950 C 0 0 0 0 0
|
| 26 |
+
21.3370 59.4330 19.0610 N 0 0 0 0 0
|
| 27 |
+
19.9900 59.3740 19.0450 C 0 0 0 0 0
|
| 28 |
+
14.0323 61.7392 17.7051 H 0 0 0 0 0
|
| 29 |
+
14.8354 59.6363 18.7276 H 0 0 0 0 0
|
| 30 |
+
15.9563 62.5754 15.9591 H 0 0 0 0 0
|
| 31 |
+
15.9669 61.4799 14.6320 H 0 0 0 0 0
|
| 32 |
+
18.1149 62.5721 14.9209 H 0 0 0 0 0
|
| 33 |
+
17.7079 59.6029 15.0428 H 0 0 0 0 0
|
| 34 |
+
19.0993 59.6088 13.3510 H 0 0 0 0 0
|
| 35 |
+
19.7166 59.0799 16.1575 H 0 0 0 0 0
|
| 36 |
+
21.6035 60.2149 15.8653 H 0 0 0 0 0
|
| 37 |
+
20.3487 61.5079 17.4284 H 0 0 0 0 0
|
| 38 |
+
16.9397 59.9061 18.2240 H 0 0 0 0 0
|
| 39 |
+
18.2965 56.9319 21.6803 H 0 0 0 0 0
|
| 40 |
+
19.8135 56.1425 22.1240 H 0 0 0 0 0
|
| 41 |
+
22.9873 58.2191 19.5765 H 0 0 0 0 0
|
| 42 |
+
1 2 2 0 0 0
|
| 43 |
+
1 3 1 0 0 0
|
| 44 |
+
1 4 1 0 0 0
|
| 45 |
+
1 5 1 0 0 0
|
| 46 |
+
5 6 1 0 0 0
|
| 47 |
+
6 7 1 0 0 0
|
| 48 |
+
7 8 1 0 0 0
|
| 49 |
+
7 9 1 0 0 0
|
| 50 |
+
8 13 1 0 0 0
|
| 51 |
+
9 10 1 0 0 0
|
| 52 |
+
9 11 1 0 0 0
|
| 53 |
+
11 12 1 0 0 0
|
| 54 |
+
11 13 1 0 0 0
|
| 55 |
+
13 14 1 0 0 0
|
| 56 |
+
14 15 4 0 0 0
|
| 57 |
+
14 23 4 0 0 0
|
| 58 |
+
15 16 4 0 0 0
|
| 59 |
+
16 17 4 0 0 0
|
| 60 |
+
17 18 4 0 0 0
|
| 61 |
+
17 23 4 0 0 0
|
| 62 |
+
18 19 1 0 0 0
|
| 63 |
+
18 20 4 0 0 0
|
| 64 |
+
20 21 4 0 0 0
|
| 65 |
+
21 22 4 0 0 0
|
| 66 |
+
22 23 4 0 0 0
|
| 67 |
+
3 24 1 0 0 0
|
| 68 |
+
4 25 1 0 0 0
|
| 69 |
+
6 26 1 0 0 0
|
| 70 |
+
6 27 1 0 0 0
|
| 71 |
+
7 28 1 0 0 0
|
| 72 |
+
9 29 1 0 0 0
|
| 73 |
+
10 30 1 0 0 0
|
| 74 |
+
11 31 1 0 0 0
|
| 75 |
+
12 32 1 0 0 0
|
| 76 |
+
13 33 1 0 0 0
|
| 77 |
+
15 34 1 0 0 0
|
| 78 |
+
19 35 1 0 0 0
|
| 79 |
+
19 36 1 0 0 0
|
| 80 |
+
21 37 1 0 0 0
|
| 81 |
+
M END
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| 82 |
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$$$$
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1fta/1fta_protein_esmfold_aligned_tr_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1fta/1fta_protein_processed_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1h8s/1h8s_ligand.mol2
ADDED
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| 1 |
+
###
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| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
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| 3 |
+
###
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| 4 |
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|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1h8s_ligand
|
| 7 |
+
43 45 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C8 22.0380 39.3580 10.4860 C.ar 1 AIC -0.0679
|
| 14 |
+
2 C5 21.4780 38.6520 12.7700 C.ar 1 AIC 0.0236
|
| 15 |
+
3 C6 15.4860 36.1150 10.4730 C.3 1 AIC 0.0482
|
| 16 |
+
4 N1 18.8390 36.6500 12.7590 N.am 1 AIC -0.2564
|
| 17 |
+
5 C2 14.7200 33.7270 10.8250 C.2 1 AIC 0.0617
|
| 18 |
+
6 N3 16.9520 34.4130 11.6170 N.am 1 AIC -0.2370
|
| 19 |
+
7 C4 20.5060 38.2190 13.7650 C.3 1 AIC 0.0983
|
| 20 |
+
8 C1 13.9960 36.4000 10.1720 C.3 1 AIC -0.0469
|
| 21 |
+
9 C3 20.0350 36.8540 13.5140 C.2 1 AIC 0.2386
|
| 22 |
+
10 C7 21.0810 38.9440 11.4370 C.ar 1 AIC -0.0525
|
| 23 |
+
11 C9 23.3850 39.5030 10.8710 C.ar 1 AIC -0.0684
|
| 24 |
+
12 C10 23.7690 39.2510 12.2090 C.ar 1 AIC -0.0679
|
| 25 |
+
13 C11 22.8270 38.7900 13.1460 C.ar 1 AIC -0.0525
|
| 26 |
+
14 C12 15.8760 34.6060 10.5490 C.3 1 AIC 0.1126
|
| 27 |
+
15 C13 16.8220 35.3550 12.7360 C.3 1 AIC 0.1336
|
| 28 |
+
16 C14 18.3260 35.3360 12.8020 C.3 1 AIC 0.1639
|
| 29 |
+
17 C15 18.3210 34.7670 11.4940 C.2 1 AIC 0.2102
|
| 30 |
+
18 C16 16.3510 36.8010 9.4180 C.3 1 AIC -0.0469
|
| 31 |
+
19 N2 19.4300 39.1090 13.7820 N.4 1 AIC 0.2496
|
| 32 |
+
20 O1 14.5590 33.2500 11.9750 O.co2 1 AIC -0.5666
|
| 33 |
+
21 O2 13.8850 33.4570 9.9080 O.co2 1 AIC -0.5666
|
| 34 |
+
22 O3 20.7130 35.8860 13.9490 O.2 1 AIC -0.3877
|
| 35 |
+
23 O4 19.1640 34.6650 10.5840 O.2 1 AIC -0.3941
|
| 36 |
+
24 S1 15.8480 36.7080 12.0890 S.3 1 AIC -0.1180
|
| 37 |
+
25 H1 21.7380 39.5633 9.4648 H 1 AIC 0.0600
|
| 38 |
+
26 H2 18.3990 37.3826 12.2397 H 1 AIC 0.1887
|
| 39 |
+
27 H3 20.9914 38.2368 14.7519 H 1 AIC 0.1260
|
| 40 |
+
28 H4 13.7495 36.0358 9.1638 H 1 AIC 0.0245
|
| 41 |
+
29 H5 13.8117 37.4831 10.2258 H 1 AIC 0.0245
|
| 42 |
+
30 H6 13.3671 35.8838 10.9123 H 1 AIC 0.0245
|
| 43 |
+
31 H7 20.0401 38.8484 11.1499 H 1 AIC 0.0563
|
| 44 |
+
32 H8 24.1273 39.8076 10.1422 H 1 AIC 0.0561
|
| 45 |
+
33 H9 24.7963 39.4143 12.5141 H 1 AIC 0.0600
|
| 46 |
+
34 H10 23.1389 38.5419 14.1541 H 1 AIC 0.0563
|
| 47 |
+
35 H11 16.2951 34.3146 9.5746 H 1 AIC 0.0742
|
| 48 |
+
36 H12 16.3555 34.9802 13.6590 H 1 AIC 0.0726
|
| 49 |
+
37 H13 18.7796 34.7351 13.6039 H 1 AIC 0.0833
|
| 50 |
+
38 H14 16.0977 36.4063 8.4230 H 1 AIC 0.0245
|
| 51 |
+
39 H15 17.4124 36.6058 9.6306 H 1 AIC 0.0245
|
| 52 |
+
40 H16 16.1659 37.8851 9.4404 H 1 AIC 0.0245
|
| 53 |
+
41 H17 19.7688 40.0424 13.9554 H 1 AIC 0.2029
|
| 54 |
+
42 H18 18.7864 38.8443 14.5112 H 1 AIC 0.2029
|
| 55 |
+
43 H19 18.9582 39.0828 12.8916 H 1 AIC 0.2029
|
| 56 |
+
@<TRIPOS>BOND
|
| 57 |
+
1 10 1 ar
|
| 58 |
+
2 1 11 ar
|
| 59 |
+
3 7 2 1
|
| 60 |
+
4 2 10 ar
|
| 61 |
+
5 2 13 ar
|
| 62 |
+
6 9 7 1
|
| 63 |
+
7 7 19 1
|
| 64 |
+
8 9 22 2
|
| 65 |
+
9 12 11 ar
|
| 66 |
+
10 13 12 ar
|
| 67 |
+
11 16 15 1
|
| 68 |
+
12 16 17 1
|
| 69 |
+
13 15 24 1
|
| 70 |
+
14 24 3 1
|
| 71 |
+
15 17 23 2
|
| 72 |
+
16 5 21 ar
|
| 73 |
+
17 5 20 ar
|
| 74 |
+
18 3 18 1
|
| 75 |
+
19 17 6 am
|
| 76 |
+
20 4 16 1
|
| 77 |
+
21 15 6 1
|
| 78 |
+
22 6 14 1
|
| 79 |
+
23 14 5 1
|
| 80 |
+
24 14 3 1
|
| 81 |
+
25 9 4 am
|
| 82 |
+
26 3 8 1
|
| 83 |
+
27 1 25 1
|
| 84 |
+
28 4 26 1
|
| 85 |
+
29 7 27 1
|
| 86 |
+
30 8 28 1
|
| 87 |
+
31 8 29 1
|
| 88 |
+
32 8 30 1
|
| 89 |
+
33 10 31 1
|
| 90 |
+
34 11 32 1
|
| 91 |
+
35 12 33 1
|
| 92 |
+
36 13 34 1
|
| 93 |
+
37 14 35 1
|
| 94 |
+
38 15 36 1
|
| 95 |
+
39 16 37 1
|
| 96 |
+
40 18 38 1
|
| 97 |
+
41 18 39 1
|
| 98 |
+
42 18 40 1
|
| 99 |
+
43 19 41 1
|
| 100 |
+
44 19 42 1
|
| 101 |
+
45 19 43 1
|
| 102 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 103 |
+
1 AIC 1
|
| 104 |
+
|
1h8s/1h8s_ligand.sdf
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1h8s_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
44 46 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
22.0380 39.3580 10.4860 C 0 0 0 0 0
|
| 6 |
+
21.4780 38.6520 12.7700 C 0 0 0 0 0
|
| 7 |
+
15.4860 36.1150 10.4730 C 0 0 0 0 0
|
| 8 |
+
18.8390 36.6500 12.7590 N 0 0 0 0 0
|
| 9 |
+
14.7200 33.7270 10.8250 C 0 0 0 0 0
|
| 10 |
+
16.9520 34.4130 11.6170 N 0 0 0 0 0
|
| 11 |
+
20.5060 38.2190 13.7650 C 0 0 0 0 0
|
| 12 |
+
13.9960 36.4000 10.1720 C 0 0 0 0 0
|
| 13 |
+
20.0350 36.8540 13.5140 C 0 0 0 0 0
|
| 14 |
+
21.0810 38.9440 11.4370 C 0 0 0 0 0
|
| 15 |
+
23.3850 39.5030 10.8710 C 0 0 0 0 0
|
| 16 |
+
23.7690 39.2510 12.2090 C 0 0 0 0 0
|
| 17 |
+
22.8270 38.7900 13.1460 C 0 0 0 0 0
|
| 18 |
+
15.8760 34.6060 10.5490 C 0 0 0 0 0
|
| 19 |
+
16.8220 35.3550 12.7360 C 0 0 0 0 0
|
| 20 |
+
18.3260 35.3360 12.8020 C 0 0 0 0 0
|
| 21 |
+
18.3210 34.7670 11.4940 C 0 0 0 0 0
|
| 22 |
+
16.3510 36.8010 9.4180 C 0 0 0 0 0
|
| 23 |
+
19.4300 39.1090 13.7820 N 0 3 0 0 0
|
| 24 |
+
14.5590 33.2500 11.9750 O 0 0 0 0 0
|
| 25 |
+
13.8850 33.4570 9.9080 O 0 0 0 0 0
|
| 26 |
+
20.7130 35.8860 13.9490 O 0 0 0 0 0
|
| 27 |
+
19.1640 34.6650 10.5840 O 0 0 0 0 0
|
| 28 |
+
15.8480 36.7080 12.0890 S 0 0 0 0 0
|
| 29 |
+
21.7363 39.5644 9.4591 H 0 0 0 0 0
|
| 30 |
+
18.3902 37.3973 12.2293 H 0 0 0 0 0
|
| 31 |
+
20.9968 38.2153 14.7382 H 0 0 0 0 0
|
| 32 |
+
13.3739 35.8880 10.9062 H 0 0 0 0 0
|
| 33 |
+
13.8147 37.4735 10.2257 H 0 0 0 0 0
|
| 34 |
+
13.7529 36.0387 9.1728 H 0 0 0 0 0
|
| 35 |
+
20.0343 38.8479 11.1483 H 0 0 0 0 0
|
| 36 |
+
24.1314 39.8093 10.1381 H 0 0 0 0 0
|
| 37 |
+
24.8020 39.4152 12.5158 H 0 0 0 0 0
|
| 38 |
+
23.1406 38.5405 14.1597 H 0 0 0 0 0
|
| 39 |
+
16.2595 34.3181 9.5702 H 0 0 0 0 0
|
| 40 |
+
16.3342 35.2629 13.7064 H 0 0 0 0 0
|
| 41 |
+
18.8621 34.8789 13.6337 H 0 0 0 0 0
|
| 42 |
+
16.1667 37.8751 9.4412 H 0 0 0 0 0
|
| 43 |
+
17.4024 36.6068 9.6298 H 0 0 0 0 0
|
| 44 |
+
16.0991 36.4091 8.4326 H 0 0 0 0 0
|
| 45 |
+
19.7739 40.0531 13.9575 H 0 0 0 0 0
|
| 46 |
+
18.9534 39.0816 12.8806 H 0 0 0 0 0
|
| 47 |
+
18.7795 38.8401 14.5202 H 0 0 0 0 0
|
| 48 |
+
14.1499 33.8958 9.0963 H 0 0 0 0 0
|
| 49 |
+
10 1 4 0 0 0
|
| 50 |
+
1 11 4 0 0 0
|
| 51 |
+
7 2 1 0 0 0
|
| 52 |
+
2 10 4 0 0 0
|
| 53 |
+
2 13 4 0 0 0
|
| 54 |
+
9 7 1 0 0 0
|
| 55 |
+
7 19 1 0 0 0
|
| 56 |
+
9 22 2 0 0 0
|
| 57 |
+
12 11 4 0 0 0
|
| 58 |
+
13 12 4 0 0 0
|
| 59 |
+
16 15 1 0 0 0
|
| 60 |
+
16 17 1 0 0 0
|
| 61 |
+
15 24 1 0 0 0
|
| 62 |
+
24 3 1 0 0 0
|
| 63 |
+
17 23 2 0 0 0
|
| 64 |
+
5 21 1 0 0 0
|
| 65 |
+
5 20 2 0 0 0
|
| 66 |
+
3 18 1 0 0 0
|
| 67 |
+
17 6 1 0 0 0
|
| 68 |
+
4 16 1 0 0 0
|
| 69 |
+
15 6 1 0 0 0
|
| 70 |
+
6 14 1 0 0 0
|
| 71 |
+
14 5 1 0 0 0
|
| 72 |
+
14 3 1 0 0 0
|
| 73 |
+
9 4 1 0 0 0
|
| 74 |
+
3 8 1 0 0 0
|
| 75 |
+
1 25 1 0 0 0
|
| 76 |
+
4 26 1 0 0 0
|
| 77 |
+
7 27 1 0 0 0
|
| 78 |
+
8 28 1 0 0 0
|
| 79 |
+
8 29 1 0 0 0
|
| 80 |
+
8 30 1 0 0 0
|
| 81 |
+
10 31 1 0 0 0
|
| 82 |
+
11 32 1 0 0 0
|
| 83 |
+
12 33 1 0 0 0
|
| 84 |
+
13 34 1 0 0 0
|
| 85 |
+
14 35 1 0 0 0
|
| 86 |
+
15 36 1 0 0 0
|
| 87 |
+
16 37 1 0 0 0
|
| 88 |
+
18 38 1 0 0 0
|
| 89 |
+
18 39 1 0 0 0
|
| 90 |
+
18 40 1 0 0 0
|
| 91 |
+
19 41 1 0 0 0
|
| 92 |
+
19 42 1 0 0 0
|
| 93 |
+
19 43 1 0 0 0
|
| 94 |
+
21 44 1 0 0 0
|
| 95 |
+
M END
|
| 96 |
+
$$$$
|
1h8s/1h8s_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1h8s/1h8s_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i8j/1i8j_ligand.mol2
ADDED
|
@@ -0,0 +1,75 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1i8j_ligand
|
| 7 |
+
30 29 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 21.0900 91.0970 49.0530 C.2 1 DSB 0.0348
|
| 14 |
+
2 O2 22.1830 90.9440 48.4620 O.co2 1 DSB -0.5690
|
| 15 |
+
3 C2 20.8720 90.2110 50.2440 C.3 1 DSB 0.0002
|
| 16 |
+
4 C3 19.4260 90.2940 50.6570 C.3 1 DSB -0.0414
|
| 17 |
+
5 C5 19.4090 89.3190 53.0310 C.3 1 DSB -0.0530
|
| 18 |
+
6 O1 20.1800 91.9210 48.7380 O.co2 1 DSB -0.5690
|
| 19 |
+
7 C6 19.1040 88.1300 53.8630 C.3 1 DSB -0.0530
|
| 20 |
+
8 C8 21.2680 87.0130 52.8070 C.3 1 DSB -0.0414
|
| 21 |
+
9 C9 22.1730 88.0670 53.4550 C.3 1 DSB 0.0002
|
| 22 |
+
10 C10 23.6270 87.6400 53.4910 C.2 1 DSB 0.0348
|
| 23 |
+
11 O11 23.8890 86.4150 53.4100 O.co2 1 DSB -0.5690
|
| 24 |
+
12 O12 24.4650 88.5480 53.6370 O.co2 1 DSB -0.5690
|
| 25 |
+
13 C7 19.9240 86.9150 53.4810 C.3 1 DSB -0.0516
|
| 26 |
+
14 C4 19.0370 89.1560 51.5690 C.3 1 DSB -0.0516
|
| 27 |
+
15 H1 21.5125 90.5441 51.0739 H 1 DSB 0.0430
|
| 28 |
+
16 H2 21.1219 89.1723 49.9820 H 1 DSB 0.0430
|
| 29 |
+
17 H3 18.7959 90.2595 49.7560 H 1 DSB 0.0283
|
| 30 |
+
18 H4 19.2603 91.2451 51.1841 H 1 DSB 0.0283
|
| 31 |
+
19 H5 20.4890 89.5183 53.0937 H 1 DSB 0.0265
|
| 32 |
+
20 H6 18.8535 90.1775 53.4364 H 1 DSB 0.0265
|
| 33 |
+
21 H7 18.0381 87.8844 53.7463 H 1 DSB 0.0265
|
| 34 |
+
22 H8 19.3107 88.3758 54.9151 H 1 DSB 0.0265
|
| 35 |
+
23 H9 21.7660 86.0341 52.8687 H 1 DSB 0.0283
|
| 36 |
+
24 H10 21.1146 87.2805 51.7511 H 1 DSB 0.0283
|
| 37 |
+
25 H11 21.8306 88.2404 54.4859 H 1 DSB 0.0430
|
| 38 |
+
26 H12 22.0939 89.0015 52.8802 H 1 DSB 0.0430
|
| 39 |
+
27 H13 19.2895 86.3202 52.8075 H 1 DSB 0.0266
|
| 40 |
+
28 H14 20.0924 86.3571 54.4139 H 1 DSB 0.0266
|
| 41 |
+
29 H15 19.5264 88.2439 51.1968 H 1 DSB 0.0266
|
| 42 |
+
30 H16 17.9451 89.0361 51.5108 H 1 DSB 0.0266
|
| 43 |
+
@<TRIPOS>BOND
|
| 44 |
+
1 1 2 ar
|
| 45 |
+
2 3 1 1
|
| 46 |
+
3 1 6 ar
|
| 47 |
+
4 4 3 1
|
| 48 |
+
5 14 4 1
|
| 49 |
+
6 7 5 1
|
| 50 |
+
7 5 14 1
|
| 51 |
+
8 13 7 1
|
| 52 |
+
9 8 9 1
|
| 53 |
+
10 8 13 1
|
| 54 |
+
11 9 10 1
|
| 55 |
+
12 10 11 ar
|
| 56 |
+
13 10 12 ar
|
| 57 |
+
14 3 15 1
|
| 58 |
+
15 3 16 1
|
| 59 |
+
16 4 17 1
|
| 60 |
+
17 4 18 1
|
| 61 |
+
18 5 19 1
|
| 62 |
+
19 5 20 1
|
| 63 |
+
20 7 21 1
|
| 64 |
+
21 7 22 1
|
| 65 |
+
22 8 23 1
|
| 66 |
+
23 8 24 1
|
| 67 |
+
24 9 25 1
|
| 68 |
+
25 9 26 1
|
| 69 |
+
26 13 27 1
|
| 70 |
+
27 13 28 1
|
| 71 |
+
28 14 29 1
|
| 72 |
+
29 14 30 1
|
| 73 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 74 |
+
1 DSB 1
|
| 75 |
+
|
1i8j/1i8j_ligand.sdf
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1i8j_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
32 31 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
21.0900 91.0970 49.0530 C 0 0 0 0 0
|
| 6 |
+
22.1830 90.9440 48.4620 O 0 0 0 0 0
|
| 7 |
+
20.8720 90.2110 50.2440 C 0 0 0 0 0
|
| 8 |
+
19.4260 90.2940 50.6570 C 0 0 0 0 0
|
| 9 |
+
19.4090 89.3190 53.0310 C 0 0 0 0 0
|
| 10 |
+
20.1800 91.9210 48.7380 O 0 0 0 0 0
|
| 11 |
+
19.1040 88.1300 53.8630 C 0 0 0 0 0
|
| 12 |
+
21.2680 87.0130 52.8070 C 0 0 0 0 0
|
| 13 |
+
22.1730 88.0670 53.4550 C 0 0 0 0 0
|
| 14 |
+
23.6270 87.6400 53.4910 C 0 0 0 0 0
|
| 15 |
+
23.8890 86.4150 53.4100 O 0 0 0 0 0
|
| 16 |
+
24.4650 88.5480 53.6370 O 0 0 0 0 0
|
| 17 |
+
19.9240 86.9150 53.4810 C 0 0 0 0 0
|
| 18 |
+
19.0370 89.1560 51.5690 C 0 0 0 0 0
|
| 19 |
+
21.5090 90.5365 51.0664 H 0 0 0 0 0
|
| 20 |
+
21.1232 89.1817 49.9879 H 0 0 0 0 0
|
| 21 |
+
18.8098 90.2396 49.7595 H 0 0 0 0 0
|
| 22 |
+
19.2766 91.2303 51.1948 H 0 0 0 0 0
|
| 23 |
+
20.4862 89.4793 53.0761 H 0 0 0 0 0
|
| 24 |
+
18.8232 90.1497 53.4245 H 0 0 0 0 0
|
| 25 |
+
19.4467 91.8362 49.3517 H 0 0 0 0 0
|
| 26 |
+
18.0531 87.8816 53.7149 H 0 0 0 0 0
|
| 27 |
+
19.3407 88.3788 54.8975 H 0 0 0 0 0
|
| 28 |
+
21.7610 86.0450 52.8966 H 0 0 0 0 0
|
| 29 |
+
21.1038 87.3025 51.7690 H 0 0 0 0 0
|
| 30 |
+
21.8392 88.2113 54.4825 H 0 0 0 0 0
|
| 31 |
+
22.1048 88.9793 52.8623 H 0 0 0 0 0
|
| 32 |
+
23.0732 85.9210 53.3006 H 0 0 0 0 0
|
| 33 |
+
19.3049 86.4228 52.7310 H 0 0 0 0 0
|
| 34 |
+
20.1609 86.4620 54.4437 H 0 0 0 0 0
|
| 35 |
+
19.5766 88.2789 51.2116 H 0 0 0 0 0
|
| 36 |
+
17.9493 89.0942 51.5348 H 0 0 0 0 0
|
| 37 |
+
1 2 2 0 0 0
|
| 38 |
+
3 1 1 0 0 0
|
| 39 |
+
1 6 1 0 0 0
|
| 40 |
+
4 3 1 0 0 0
|
| 41 |
+
14 4 1 0 0 0
|
| 42 |
+
7 5 1 0 0 0
|
| 43 |
+
5 14 1 0 0 0
|
| 44 |
+
13 7 1 0 0 0
|
| 45 |
+
8 9 1 0 0 0
|
| 46 |
+
8 13 1 0 0 0
|
| 47 |
+
9 10 1 0 0 0
|
| 48 |
+
10 11 1 0 0 0
|
| 49 |
+
10 12 2 0 0 0
|
| 50 |
+
3 15 1 0 0 0
|
| 51 |
+
3 16 1 0 0 0
|
| 52 |
+
4 17 1 0 0 0
|
| 53 |
+
4 18 1 0 0 0
|
| 54 |
+
5 19 1 0 0 0
|
| 55 |
+
5 20 1 0 0 0
|
| 56 |
+
6 21 1 0 0 0
|
| 57 |
+
7 22 1 0 0 0
|
| 58 |
+
7 23 1 0 0 0
|
| 59 |
+
8 24 1 0 0 0
|
| 60 |
+
8 25 1 0 0 0
|
| 61 |
+
9 26 1 0 0 0
|
| 62 |
+
9 27 1 0 0 0
|
| 63 |
+
11 28 1 0 0 0
|
| 64 |
+
13 29 1 0 0 0
|
| 65 |
+
13 30 1 0 0 0
|
| 66 |
+
14 31 1 0 0 0
|
| 67 |
+
14 32 1 0 0 0
|
| 68 |
+
M END
|
| 69 |
+
$$$$
|
1i8j/1i8j_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i8j/1i8j_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ie9/1ie9_ligand.mol2
ADDED
|
@@ -0,0 +1,166 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1ie9_ligand
|
| 7 |
+
74 76 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O2 16.9800 17.5100 34.6530 O.3 1 VDX -0.3898
|
| 14 |
+
2 O3 4.6030 26.3090 34.8340 O.3 1 VDX -0.3891
|
| 15 |
+
3 C1 14.1900 17.4070 35.5340 C.3 1 VDX 0.0864
|
| 16 |
+
4 C2 14.8850 16.3260 34.6780 C.3 1 VDX 0.0102
|
| 17 |
+
5 C3 15.9770 17.0020 33.7970 C.3 1 VDX 0.0660
|
| 18 |
+
6 C4 15.3640 18.1640 33.0050 C.3 1 VDX -0.0024
|
| 19 |
+
7 C5 14.5540 19.1610 33.7870 C.2 1 VDX -0.0535
|
| 20 |
+
8 C6 14.7020 20.4720 33.4950 C.2 1 VDX -0.0886
|
| 21 |
+
9 C7 14.0990 21.6380 34.1650 C.2 1 VDX -0.0795
|
| 22 |
+
10 C8 13.8420 22.8600 33.6810 C.2 1 VDX -0.0477
|
| 23 |
+
11 C9 14.1920 23.3060 32.2700 C.3 1 VDX -0.0111
|
| 24 |
+
12 C10 13.6120 18.5750 34.7620 C.2 1 VDX -0.0401
|
| 25 |
+
13 C11 12.8740 23.6780 31.5580 C.3 1 VDX -0.0386
|
| 26 |
+
14 C12 12.0280 24.6670 32.4050 C.3 1 VDX -0.0421
|
| 27 |
+
15 C13 11.7400 24.1920 33.8560 C.3 1 VDX -0.0125
|
| 28 |
+
16 C14 13.1630 23.9190 34.4800 C.3 1 VDX 0.0059
|
| 29 |
+
17 C15 12.9450 23.7500 35.9730 C.3 1 VDX -0.0357
|
| 30 |
+
18 C16 11.7720 24.7360 36.1940 C.3 1 VDX -0.0465
|
| 31 |
+
19 C17 11.2500 25.2820 34.8340 C.3 1 VDX -0.0301
|
| 32 |
+
20 C18 10.8410 22.9170 33.8900 C.3 1 VDX -0.0565
|
| 33 |
+
21 C19 12.2960 18.9620 34.8400 C.2 1 VDX -0.1221
|
| 34 |
+
22 C20 9.7230 25.5380 34.9110 C.3 1 VDX -0.0403
|
| 35 |
+
23 C21 9.4280 26.5180 36.1020 C.3 1 VDX -0.0621
|
| 36 |
+
24 C22 9.0600 25.8970 33.6160 C.3 1 VDX -0.0501
|
| 37 |
+
25 C23 7.4920 26.0950 33.8050 C.3 1 VDX -0.0502
|
| 38 |
+
26 C24 6.5730 24.9620 34.2050 C.3 1 VDX -0.0245
|
| 39 |
+
27 C25 5.0440 25.2150 34.0620 C.3 1 VDX 0.0605
|
| 40 |
+
28 C26 4.6470 25.4180 32.6280 C.3 1 VDX -0.0363
|
| 41 |
+
29 C27 4.2480 24.0530 34.6660 C.3 1 VDX -0.0363
|
| 42 |
+
30 O1 13.2270 16.8630 36.4060 O.3 1 VDX -0.3798
|
| 43 |
+
31 H1 17.3582 16.7969 35.1539 H 1 VDX 0.2100
|
| 44 |
+
32 H2 5.0574 27.0954 34.5554 H 1 VDX 0.2101
|
| 45 |
+
33 H3 14.9810 17.8307 36.1703 H 1 VDX 0.0751
|
| 46 |
+
34 H4 14.1431 15.8333 34.0324 H 1 VDX 0.0338
|
| 47 |
+
35 H5 15.3525 15.5786 35.3359 H 1 VDX 0.0338
|
| 48 |
+
36 H6 16.4084 16.2654 33.1033 H 1 VDX 0.0615
|
| 49 |
+
37 H7 14.7081 17.7329 32.2343 H 1 VDX 0.0412
|
| 50 |
+
38 H8 16.1880 18.7096 32.5219 H 1 VDX 0.0412
|
| 51 |
+
39 H9 15.3538 20.6970 32.6521 H 1 VDX 0.0472
|
| 52 |
+
40 H10 13.8217 21.4832 35.2067 H 1 VDX 0.0303
|
| 53 |
+
41 H11 14.6915 22.4876 31.7309 H 1 VDX 0.0491
|
| 54 |
+
42 H12 14.8580 24.1807 32.3074 H 1 VDX 0.0491
|
| 55 |
+
43 H13 12.2889 22.7622 31.3881 H 1 VDX 0.0296
|
| 56 |
+
44 H14 13.1101 24.1469 30.5914 H 1 VDX 0.0296
|
| 57 |
+
45 H15 11.0648 24.8182 31.8958 H 1 VDX 0.0275
|
| 58 |
+
46 H16 12.5689 25.6234 32.4579 H 1 VDX 0.0275
|
| 59 |
+
47 H17 13.7787 24.8227 34.3606 H 1 VDX 0.0531
|
| 60 |
+
48 H18 13.8353 24.0407 36.5499 H 1 VDX 0.0299
|
| 61 |
+
49 H19 12.6630 22.7180 36.2290 H 1 VDX 0.0299
|
| 62 |
+
50 H20 12.1189 25.5774 36.8118 H 1 VDX 0.0270
|
| 63 |
+
51 H21 10.9538 24.2139 36.7116 H 1 VDX 0.0270
|
| 64 |
+
52 H22 11.7353 26.2372 34.5849 H 1 VDX 0.0311
|
| 65 |
+
53 H23 11.2311 22.1742 33.1786 H 1 VDX 0.0237
|
| 66 |
+
54 H24 9.8117 23.1865 33.6110 H 1 VDX 0.0237
|
| 67 |
+
55 H25 10.8465 22.4914 34.9043 H 1 VDX 0.0237
|
| 68 |
+
56 H26 11.9430 19.8121 34.2580 H 1 VDX 0.0191
|
| 69 |
+
57 H27 11.6059 18.4187 35.4838 H 1 VDX 0.0191
|
| 70 |
+
58 H28 9.2729 24.5754 35.1951 H 1 VDX 0.0301
|
| 71 |
+
59 H29 8.3457 26.7049 36.1635 H 1 VDX 0.0233
|
| 72 |
+
60 H30 9.9553 27.4686 35.9339 H 1 VDX 0.0233
|
| 73 |
+
61 H31 9.7762 26.0669 37.0429 H 1 VDX 0.0233
|
| 74 |
+
62 H32 9.2342 25.0906 32.8885 H 1 VDX 0.0268
|
| 75 |
+
63 H33 9.4963 26.8331 33.2374 H 1 VDX 0.0268
|
| 76 |
+
64 H34 7.1132 26.4707 32.8431 H 1 VDX 0.0266
|
| 77 |
+
65 H35 7.3725 26.8717 34.5747 H 1 VDX 0.0266
|
| 78 |
+
66 H36 6.7741 24.7272 35.2606 H 1 VDX 0.0293
|
| 79 |
+
67 H37 6.8261 24.0921 33.5812 H 1 VDX 0.0293
|
| 80 |
+
68 H38 4.9920 24.5634 32.0275 H 1 VDX 0.0257
|
| 81 |
+
69 H39 5.1062 26.3424 32.2477 H 1 VDX 0.0257
|
| 82 |
+
70 H40 3.5521 25.4968 32.5583 H 1 VDX 0.0257
|
| 83 |
+
71 H41 4.5052 23.1208 34.1417 H 1 VDX 0.0257
|
| 84 |
+
72 H42 3.1713 24.2501 34.5567 H 1 VDX 0.0257
|
| 85 |
+
73 H43 4.4962 23.9540 35.7330 H 1 VDX 0.0257
|
| 86 |
+
74 H44 12.4805 16.5602 35.9024 H 1 VDX 0.2129
|
| 87 |
+
@<TRIPOS>BOND
|
| 88 |
+
1 5 1 1
|
| 89 |
+
2 27 2 1
|
| 90 |
+
3 3 4 1
|
| 91 |
+
4 12 3 1
|
| 92 |
+
5 3 30 1
|
| 93 |
+
6 5 4 1
|
| 94 |
+
7 6 5 1
|
| 95 |
+
8 7 6 1
|
| 96 |
+
9 8 7 2
|
| 97 |
+
10 7 12 1
|
| 98 |
+
11 9 8 1
|
| 99 |
+
12 10 9 2
|
| 100 |
+
13 10 11 1
|
| 101 |
+
14 16 10 1
|
| 102 |
+
15 13 11 1
|
| 103 |
+
16 12 21 2
|
| 104 |
+
17 14 13 1
|
| 105 |
+
18 15 14 1
|
| 106 |
+
19 15 16 1
|
| 107 |
+
20 19 15 1
|
| 108 |
+
21 15 20 1
|
| 109 |
+
22 17 16 1
|
| 110 |
+
23 18 17 1
|
| 111 |
+
24 19 18 1
|
| 112 |
+
25 22 19 1
|
| 113 |
+
26 22 23 1
|
| 114 |
+
27 24 22 1
|
| 115 |
+
28 25 24 1
|
| 116 |
+
29 26 25 1
|
| 117 |
+
30 26 27 1
|
| 118 |
+
31 27 28 1
|
| 119 |
+
32 27 29 1
|
| 120 |
+
33 1 31 1
|
| 121 |
+
34 2 32 1
|
| 122 |
+
35 3 33 1
|
| 123 |
+
36 4 34 1
|
| 124 |
+
37 4 35 1
|
| 125 |
+
38 5 36 1
|
| 126 |
+
39 6 37 1
|
| 127 |
+
40 6 38 1
|
| 128 |
+
41 8 39 1
|
| 129 |
+
42 9 40 1
|
| 130 |
+
43 11 41 1
|
| 131 |
+
44 11 42 1
|
| 132 |
+
45 13 43 1
|
| 133 |
+
46 13 44 1
|
| 134 |
+
47 14 45 1
|
| 135 |
+
48 14 46 1
|
| 136 |
+
49 16 47 1
|
| 137 |
+
50 17 48 1
|
| 138 |
+
51 17 49 1
|
| 139 |
+
52 18 50 1
|
| 140 |
+
53 18 51 1
|
| 141 |
+
54 19 52 1
|
| 142 |
+
55 20 53 1
|
| 143 |
+
56 20 54 1
|
| 144 |
+
57 20 55 1
|
| 145 |
+
58 21 56 1
|
| 146 |
+
59 21 57 1
|
| 147 |
+
60 22 58 1
|
| 148 |
+
61 23 59 1
|
| 149 |
+
62 23 60 1
|
| 150 |
+
63 23 61 1
|
| 151 |
+
64 24 62 1
|
| 152 |
+
65 24 63 1
|
| 153 |
+
66 25 64 1
|
| 154 |
+
67 25 65 1
|
| 155 |
+
68 26 66 1
|
| 156 |
+
69 26 67 1
|
| 157 |
+
70 28 68 1
|
| 158 |
+
71 28 69 1
|
| 159 |
+
72 28 70 1
|
| 160 |
+
73 29 71 1
|
| 161 |
+
74 29 72 1
|
| 162 |
+
75 29 73 1
|
| 163 |
+
76 30 74 1
|
| 164 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 165 |
+
1 VDX 1
|
| 166 |
+
|
1ie9/1ie9_ligand.sdf
ADDED
|
@@ -0,0 +1,156 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1ie9_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
74 76 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
16.9800 17.5100 34.6530 O 0 0 0 0 0
|
| 6 |
+
4.6030 26.3090 34.8340 O 0 0 0 0 0
|
| 7 |
+
14.1900 17.4070 35.5340 C 0 0 0 0 0
|
| 8 |
+
14.8850 16.3260 34.6780 C 0 0 0 0 0
|
| 9 |
+
15.9770 17.0020 33.7970 C 0 0 0 0 0
|
| 10 |
+
15.3640 18.1640 33.0050 C 0 0 0 0 0
|
| 11 |
+
14.5540 19.1610 33.7870 C 0 0 0 0 0
|
| 12 |
+
14.7020 20.4720 33.4950 C 0 0 0 0 0
|
| 13 |
+
14.0990 21.6380 34.1650 C 0 0 0 0 0
|
| 14 |
+
13.8420 22.8600 33.6810 C 0 0 0 0 0
|
| 15 |
+
14.1920 23.3060 32.2700 C 0 0 0 0 0
|
| 16 |
+
13.6120 18.5750 34.7620 C 0 0 0 0 0
|
| 17 |
+
12.8740 23.6780 31.5580 C 0 0 0 0 0
|
| 18 |
+
12.0280 24.6670 32.4050 C 0 0 0 0 0
|
| 19 |
+
11.7400 24.1920 33.8560 C 0 0 0 0 0
|
| 20 |
+
13.1630 23.9190 34.4800 C 0 0 0 0 0
|
| 21 |
+
12.9450 23.7500 35.9730 C 0 0 0 0 0
|
| 22 |
+
11.7720 24.7360 36.1940 C 0 0 0 0 0
|
| 23 |
+
11.2500 25.2820 34.8340 C 0 0 0 0 0
|
| 24 |
+
10.8410 22.9170 33.8900 C 0 0 0 0 0
|
| 25 |
+
12.2960 18.9620 34.8400 C 0 0 0 0 0
|
| 26 |
+
9.7230 25.5380 34.9110 C 0 0 0 0 0
|
| 27 |
+
9.4280 26.5180 36.1020 C 0 0 0 0 0
|
| 28 |
+
9.0600 25.8970 33.6160 C 0 0 0 0 0
|
| 29 |
+
7.4920 26.0950 33.8050 C 0 0 0 0 0
|
| 30 |
+
6.5730 24.9620 34.2050 C 0 0 0 0 0
|
| 31 |
+
5.0440 25.2150 34.0620 C 0 0 0 0 0
|
| 32 |
+
4.6470 25.4180 32.6280 C 0 0 0 0 0
|
| 33 |
+
4.2480 24.0530 34.6660 C 0 0 0 0 0
|
| 34 |
+
13.2270 16.8630 36.4060 O 0 0 0 0 0
|
| 35 |
+
17.3686 16.7881 35.1524 H 0 0 0 0 0
|
| 36 |
+
3.6577 26.4243 34.7129 H 0 0 0 0 0
|
| 37 |
+
15.0057 17.8249 36.1239 H 0 0 0 0 0
|
| 38 |
+
14.1508 15.8337 34.0403 H 0 0 0 0 0
|
| 39 |
+
15.3455 15.5821 35.3281 H 0 0 0 0 0
|
| 40 |
+
16.3932 16.2750 33.0996 H 0 0 0 0 0
|
| 41 |
+
14.6754 17.7111 32.2917 H 0 0 0 0 0
|
| 42 |
+
16.2041 18.7200 32.5888 H 0 0 0 0 0
|
| 43 |
+
15.3544 20.6972 32.6514 H 0 0 0 0 0
|
| 44 |
+
13.8214 21.4830 35.2076 H 0 0 0 0 0
|
| 45 |
+
14.7013 22.5055 31.7334 H 0 0 0 0 0
|
| 46 |
+
14.8643 24.1635 32.2979 H 0 0 0 0 0
|
| 47 |
+
12.2936 22.7675 31.4090 H 0 0 0 0 0
|
| 48 |
+
13.1175 24.1570 30.6096 H 0 0 0 0 0
|
| 49 |
+
11.0642 24.7697 31.9063 H 0 0 0 0 0
|
| 50 |
+
12.6000 25.5918 32.4803 H 0 0 0 0 0
|
| 51 |
+
13.8950 24.7241 34.4159 H 0 0 0 0 0
|
| 52 |
+
13.8257 23.9583 36.5806 H 0 0 0 0 0
|
| 53 |
+
12.7337 22.7262 36.2817 H 0 0 0 0 0
|
| 54 |
+
12.1234 25.5723 36.7983 H 0 0 0 0 0
|
| 55 |
+
10.9605 24.2113 36.6982 H 0 0 0 0 0
|
| 56 |
+
11.6139 26.2589 34.5157 H 0 0 0 0 0
|
| 57 |
+
9.8876 23.1332 33.4079 H 0 0 0 0 0
|
| 58 |
+
11.3419 22.1066 33.3604 H 0 0 0 0 0
|
| 59 |
+
10.6677 22.6237 34.9254 H 0 0 0 0 0
|
| 60 |
+
11.9125 19.7285 34.1665 H 0 0 0 0 0
|
| 61 |
+
11.6355 18.5026 35.5754 H 0 0 0 0 0
|
| 62 |
+
9.2389 24.5847 35.1231 H 0 0 0 0 0
|
| 63 |
+
9.7735 26.0699 37.0336 H 0 0 0 0 0
|
| 64 |
+
9.9510 27.4595 35.9342 H 0 0 0 0 0
|
| 65 |
+
8.3554 26.7024 36.1619 H 0 0 0 0 0
|
| 66 |
+
9.2245 25.0869 32.9055 H 0 0 0 0 0
|
| 67 |
+
9.4870 26.8327 33.2551 H 0 0 0 0 0
|
| 68 |
+
7.1483 26.3577 32.8045 H 0 0 0 0 0
|
| 69 |
+
7.4242 26.7843 34.6467 H 0 0 0 0 0
|
| 70 |
+
6.7504 24.7934 35.2672 H 0 0 0 0 0
|
| 71 |
+
6.8042 24.1370 33.5312 H 0 0 0 0 0
|
| 72 |
+
5.1775 26.2802 32.2240 H 0 0 0 0 0
|
| 73 |
+
4.9039 24.5291 32.0519 H 0 0 0 0 0
|
| 74 |
+
3.5724 25.5915 32.5709 H 0 0 0 0 0
|
| 75 |
+
4.5045 23.1297 34.1465 H 0 0 0 0 0
|
| 76 |
+
4.4939 23.9567 35.7235 H 0 0 0 0 0
|
| 77 |
+
3.1814 24.2490 34.5560 H 0 0 0 0 0
|
| 78 |
+
13.6114 16.1254 36.8854 H 0 0 0 0 0
|
| 79 |
+
5 1 1 0 0 0
|
| 80 |
+
27 2 1 0 0 0
|
| 81 |
+
3 4 1 0 0 0
|
| 82 |
+
12 3 1 0 0 0
|
| 83 |
+
3 30 1 0 0 0
|
| 84 |
+
5 4 1 0 0 0
|
| 85 |
+
6 5 1 0 0 0
|
| 86 |
+
7 6 1 0 0 0
|
| 87 |
+
8 7 2 0 0 0
|
| 88 |
+
7 12 1 0 0 0
|
| 89 |
+
9 8 1 0 0 0
|
| 90 |
+
10 9 2 0 0 0
|
| 91 |
+
10 11 1 0 0 0
|
| 92 |
+
16 10 1 0 0 0
|
| 93 |
+
13 11 1 0 0 0
|
| 94 |
+
12 21 2 0 0 0
|
| 95 |
+
14 13 1 0 0 0
|
| 96 |
+
15 14 1 0 0 0
|
| 97 |
+
15 16 1 0 0 0
|
| 98 |
+
19 15 1 0 0 0
|
| 99 |
+
15 20 1 0 0 0
|
| 100 |
+
17 16 1 0 0 0
|
| 101 |
+
18 17 1 0 0 0
|
| 102 |
+
19 18 1 0 0 0
|
| 103 |
+
22 19 1 0 0 0
|
| 104 |
+
22 23 1 0 0 0
|
| 105 |
+
24 22 1 0 0 0
|
| 106 |
+
25 24 1 0 0 0
|
| 107 |
+
26 25 1 0 0 0
|
| 108 |
+
26 27 1 0 0 0
|
| 109 |
+
27 28 1 0 0 0
|
| 110 |
+
27 29 1 0 0 0
|
| 111 |
+
1 31 1 0 0 0
|
| 112 |
+
2 32 1 0 0 0
|
| 113 |
+
3 33 1 0 0 0
|
| 114 |
+
4 34 1 0 0 0
|
| 115 |
+
4 35 1 0 0 0
|
| 116 |
+
5 36 1 0 0 0
|
| 117 |
+
6 37 1 0 0 0
|
| 118 |
+
6 38 1 0 0 0
|
| 119 |
+
8 39 1 0 0 0
|
| 120 |
+
9 40 1 0 0 0
|
| 121 |
+
11 41 1 0 0 0
|
| 122 |
+
11 42 1 0 0 0
|
| 123 |
+
13 43 1 0 0 0
|
| 124 |
+
13 44 1 0 0 0
|
| 125 |
+
14 45 1 0 0 0
|
| 126 |
+
14 46 1 0 0 0
|
| 127 |
+
16 47 1 0 0 0
|
| 128 |
+
17 48 1 0 0 0
|
| 129 |
+
17 49 1 0 0 0
|
| 130 |
+
18 50 1 0 0 0
|
| 131 |
+
18 51 1 0 0 0
|
| 132 |
+
19 52 1 0 0 0
|
| 133 |
+
20 53 1 0 0 0
|
| 134 |
+
20 54 1 0 0 0
|
| 135 |
+
20 55 1 0 0 0
|
| 136 |
+
21 56 1 0 0 0
|
| 137 |
+
21 57 1 0 0 0
|
| 138 |
+
22 58 1 0 0 0
|
| 139 |
+
23 59 1 0 0 0
|
| 140 |
+
23 60 1 0 0 0
|
| 141 |
+
23 61 1 0 0 0
|
| 142 |
+
24 62 1 0 0 0
|
| 143 |
+
24 63 1 0 0 0
|
| 144 |
+
25 64 1 0 0 0
|
| 145 |
+
25 65 1 0 0 0
|
| 146 |
+
26 66 1 0 0 0
|
| 147 |
+
26 67 1 0 0 0
|
| 148 |
+
28 68 1 0 0 0
|
| 149 |
+
28 69 1 0 0 0
|
| 150 |
+
28 70 1 0 0 0
|
| 151 |
+
29 71 1 0 0 0
|
| 152 |
+
29 72 1 0 0 0
|
| 153 |
+
29 73 1 0 0 0
|
| 154 |
+
30 74 1 0 0 0
|
| 155 |
+
M END
|
| 156 |
+
$$$$
|
1ie9/1ie9_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ie9/1ie9_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1k1n/1k1n_ligand.mol2
ADDED
|
@@ -0,0 +1,180 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:48 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1k1n_ligand
|
| 7 |
+
81 83 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C51 -1.1610 15.9210 18.7940 C.ar 1 CCR -0.0386
|
| 14 |
+
2 C52 -2.2510 16.2390 17.9570 C.ar 1 CCR -0.0601
|
| 15 |
+
3 C53 -2.4960 15.4860 16.8130 C.ar 1 CCR -0.0633
|
| 16 |
+
4 C55 -0.6290 14.0620 17.3350 C.ar 1 CCR -0.0633
|
| 17 |
+
5 C56 -0.3600 14.8220 18.4810 C.ar 1 CCR -0.0601
|
| 18 |
+
6 C54 -1.7020 14.3660 16.4650 C.ar 1 CCR 0.0188
|
| 19 |
+
7 C57 -1.9850 13.5460 15.2290 C.cat 1 CCR 0.2318
|
| 20 |
+
8 N58 -2.6060 14.0610 14.1910 N.pl3 1 CCR -0.2729
|
| 21 |
+
9 N59 -1.6020 12.2830 15.1330 N.pl3 1 CCR -0.2729
|
| 22 |
+
10 C44 -0.8830 16.7710 20.0210 C.3 1 CCR 0.0214
|
| 23 |
+
11 C41 0.1430 17.8700 19.6190 C.3 1 CCR 0.1405
|
| 24 |
+
12 N40 -0.5090 18.8490 18.7710 N.am 1 CCR -0.2622
|
| 25 |
+
13 C42 0.5480 18.6580 20.8480 C.2 1 CCR 0.2062
|
| 26 |
+
14 O43 -0.2610 18.7330 21.7610 O.2 1 CCR -0.3941
|
| 27 |
+
15 N60 1.7630 19.2570 20.9060 N.am 1 CCR -0.2712
|
| 28 |
+
16 C61 2.1020 20.0820 22.0650 C.3 1 CCR 0.0339
|
| 29 |
+
17 C62 2.1600 21.5440 21.6280 C.3 1 CCR -0.0325
|
| 30 |
+
18 C63 3.1630 21.6850 20.4460 C.3 1 CCR -0.0494
|
| 31 |
+
19 C64 2.6840 20.8010 19.2710 C.3 1 CCR -0.0325
|
| 32 |
+
20 C65 2.6240 19.3280 19.7190 C.3 1 CCR 0.0339
|
| 33 |
+
21 N23 -0.6380 20.4090 15.4420 N.am 1 CCR -0.2268
|
| 34 |
+
22 S20 -0.5480 21.9710 14.9630 S.o2 1 CCR 0.0592
|
| 35 |
+
23 O21 -1.7860 22.5480 15.4320 O.2 1 CCR -0.1538
|
| 36 |
+
24 O22 -0.4330 21.9640 13.5300 O.2 1 CCR -0.1538
|
| 37 |
+
25 C11 0.9230 22.5860 15.6520 C.ar 1 CCR 0.0929
|
| 38 |
+
26 C12 0.8790 23.6800 16.5800 C.ar 1 CCR -0.0328
|
| 39 |
+
27 C13 2.0660 24.1870 17.1710 C.ar 1 CCR -0.0206
|
| 40 |
+
28 C14 3.3110 23.6100 16.8580 C.ar 1 CCR 0.0795
|
| 41 |
+
29 C15 3.3440 22.5220 15.9590 C.ar 1 CCR -0.0435
|
| 42 |
+
30 C16 2.1830 22.0070 15.3510 C.ar 1 CCR -0.0415
|
| 43 |
+
31 C17 -0.4370 24.3850 16.9880 C.3 1 CCR -0.0358
|
| 44 |
+
32 C18 2.0720 25.3710 18.1710 C.3 1 CCR -0.0389
|
| 45 |
+
33 C10 2.5000 20.8290 14.3960 C.3 1 CCR -0.0363
|
| 46 |
+
34 O11 4.4940 24.1220 17.4630 O.3 1 CCR -0.3285
|
| 47 |
+
35 C19 5.7750 23.4850 17.2280 C.3 1 CCR 0.0574
|
| 48 |
+
36 C30 -1.0760 20.0720 16.7690 C.3 1 CCR 0.1374
|
| 49 |
+
37 C31 -2.5130 19.5450 16.6440 C.3 1 CCR 0.0371
|
| 50 |
+
38 C32 -3.3320 19.8250 17.8750 C.2 1 CCR 0.0389
|
| 51 |
+
39 O33 -4.5130 19.4630 17.8290 O.co2 1 CCR -0.5688
|
| 52 |
+
40 O34 -2.8240 20.4280 18.8600 O.co2 1 CCR -0.5688
|
| 53 |
+
41 C35 -0.2230 19.0280 17.4520 C.2 1 CCR 0.2018
|
| 54 |
+
42 O36 0.6400 18.4310 16.8340 O.2 1 CCR -0.3947
|
| 55 |
+
43 H1 -2.8990 17.0717 18.2056 H 1 CCR 0.0557
|
| 56 |
+
44 H2 -3.3208 15.7654 16.1675 H 1 CCR 0.0599
|
| 57 |
+
45 H3 0.0060 13.2133 17.1077 H 1 CCR 0.0599
|
| 58 |
+
46 H4 0.4707 14.5562 19.1247 H 1 CCR 0.0557
|
| 59 |
+
47 H5 -2.7874 13.4809 13.3594 H 1 CCR 0.3180
|
| 60 |
+
48 H6 -2.9112 15.0446 14.2093 H 1 CCR 0.3180
|
| 61 |
+
49 H7 -1.1115 11.8324 15.9187 H 1 CCR 0.3180
|
| 62 |
+
50 H8 -1.7944 11.7505 14.2726 H 1 CCR 0.3180
|
| 63 |
+
51 H9 -0.4648 16.1446 20.8227 H 1 CCR 0.0474
|
| 64 |
+
52 H10 -1.8150 17.2395 20.3701 H 1 CCR 0.0474
|
| 65 |
+
53 H11 1.0149 17.4201 19.1216 H 1 CCR 0.0823
|
| 66 |
+
54 H12 -1.2130 19.4291 19.1808 H 1 CCR 0.1885
|
| 67 |
+
55 H13 3.0807 19.7760 22.4631 H 1 CCR 0.0522
|
| 68 |
+
56 H14 1.3347 19.9590 22.8435 H 1 CCR 0.0522
|
| 69 |
+
57 H15 2.4944 22.1670 22.4706 H 1 CCR 0.0285
|
| 70 |
+
58 H16 1.1610 21.8711 21.3039 H 1 CCR 0.0285
|
| 71 |
+
59 H17 4.1624 21.3586 20.7694 H 1 CCR 0.0267
|
| 72 |
+
60 H18 3.2070 22.7356 20.1230 H 1 CCR 0.0267
|
| 73 |
+
61 H19 3.3863 20.8989 18.4300 H 1 CCR 0.0285
|
| 74 |
+
62 H20 1.6829 21.1272 18.9526 H 1 CCR 0.0285
|
| 75 |
+
63 H21 2.2033 18.7083 18.9134 H 1 CCR 0.0522
|
| 76 |
+
64 H22 3.6343 18.9705 19.9671 H 1 CCR 0.0522
|
| 77 |
+
65 H23 -0.3856 19.6809 14.8047 H 1 CCR 0.1704
|
| 78 |
+
66 H24 4.2997 22.0656 15.7279 H 1 CCR 0.0407
|
| 79 |
+
67 H25 -1.2833 23.9093 16.4708 H 1 CCR 0.0373
|
| 80 |
+
68 H26 -0.3861 25.4474 16.7074 H 1 CCR 0.0373
|
| 81 |
+
69 H27 -0.5770 24.2993 18.0757 H 1 CCR 0.0373
|
| 82 |
+
70 H28 1.0422 25.7252 18.3260 H 1 CCR 0.0340
|
| 83 |
+
71 H29 2.6843 26.1901 17.7658 H 1 CCR 0.0340
|
| 84 |
+
72 H30 2.4936 25.0381 19.1309 H 1 CCR 0.0340
|
| 85 |
+
73 H31 1.5664 20.4605 13.9459 H 1 CCR 0.0376
|
| 86 |
+
74 H32 2.9796 20.0169 14.9621 H 1 CCR 0.0376
|
| 87 |
+
75 H33 3.1790 21.1732 13.6019 H 1 CCR 0.0376
|
| 88 |
+
76 H34 6.5594 24.0248 17.7788 H 1 CCR 0.0574
|
| 89 |
+
77 H35 6.0026 23.5051 16.1520 H 1 CCR 0.0574
|
| 90 |
+
78 H36 5.7350 22.4419 17.5750 H 1 CCR 0.0574
|
| 91 |
+
79 H37 -1.0669 20.9827 17.3858 H 1 CCR 0.0772
|
| 92 |
+
80 H38 -2.4784 18.4576 16.4818 H 1 CCR 0.0474
|
| 93 |
+
81 H39 -2.9938 20.0293 15.7813 H 1 CCR 0.0474
|
| 94 |
+
@<TRIPOS>BOND
|
| 95 |
+
1 1 10 1
|
| 96 |
+
2 1 5 ar
|
| 97 |
+
3 1 2 ar
|
| 98 |
+
4 2 3 ar
|
| 99 |
+
5 3 6 ar
|
| 100 |
+
6 6 4 ar
|
| 101 |
+
7 6 7 1
|
| 102 |
+
8 7 9 ar
|
| 103 |
+
9 7 8 ar
|
| 104 |
+
10 4 5 ar
|
| 105 |
+
11 10 11 1
|
| 106 |
+
12 11 13 1
|
| 107 |
+
13 11 12 1
|
| 108 |
+
14 12 41 am
|
| 109 |
+
15 41 42 2
|
| 110 |
+
16 41 36 1
|
| 111 |
+
17 36 37 1
|
| 112 |
+
18 36 21 1
|
| 113 |
+
19 21 22 am
|
| 114 |
+
20 22 25 1
|
| 115 |
+
21 22 24 2
|
| 116 |
+
22 22 23 2
|
| 117 |
+
23 25 30 ar
|
| 118 |
+
24 25 26 ar
|
| 119 |
+
25 26 31 1
|
| 120 |
+
26 26 27 ar
|
| 121 |
+
27 27 32 1
|
| 122 |
+
28 27 28 ar
|
| 123 |
+
29 28 34 1
|
| 124 |
+
30 28 29 ar
|
| 125 |
+
31 29 30 ar
|
| 126 |
+
32 30 33 1
|
| 127 |
+
33 34 35 1
|
| 128 |
+
34 37 38 1
|
| 129 |
+
35 38 40 ar
|
| 130 |
+
36 38 39 ar
|
| 131 |
+
37 13 15 am
|
| 132 |
+
38 13 14 2
|
| 133 |
+
39 15 20 1
|
| 134 |
+
40 15 16 1
|
| 135 |
+
41 16 17 1
|
| 136 |
+
42 17 18 1
|
| 137 |
+
43 18 19 1
|
| 138 |
+
44 19 20 1
|
| 139 |
+
45 2 43 1
|
| 140 |
+
46 3 44 1
|
| 141 |
+
47 4 45 1
|
| 142 |
+
48 5 46 1
|
| 143 |
+
49 8 47 1
|
| 144 |
+
50 8 48 1
|
| 145 |
+
51 9 49 1
|
| 146 |
+
52 9 50 1
|
| 147 |
+
53 10 51 1
|
| 148 |
+
54 10 52 1
|
| 149 |
+
55 11 53 1
|
| 150 |
+
56 12 54 1
|
| 151 |
+
57 16 55 1
|
| 152 |
+
58 16 56 1
|
| 153 |
+
59 17 57 1
|
| 154 |
+
60 17 58 1
|
| 155 |
+
61 18 59 1
|
| 156 |
+
62 18 60 1
|
| 157 |
+
63 19 61 1
|
| 158 |
+
64 19 62 1
|
| 159 |
+
65 20 63 1
|
| 160 |
+
66 20 64 1
|
| 161 |
+
67 21 65 1
|
| 162 |
+
68 29 66 1
|
| 163 |
+
69 31 67 1
|
| 164 |
+
70 31 68 1
|
| 165 |
+
71 31 69 1
|
| 166 |
+
72 32 70 1
|
| 167 |
+
73 32 71 1
|
| 168 |
+
74 32 72 1
|
| 169 |
+
75 33 73 1
|
| 170 |
+
76 33 74 1
|
| 171 |
+
77 33 75 1
|
| 172 |
+
78 35 76 1
|
| 173 |
+
79 35 77 1
|
| 174 |
+
80 35 78 1
|
| 175 |
+
81 36 79 1
|
| 176 |
+
82 37 80 1
|
| 177 |
+
83 37 81 1
|
| 178 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 179 |
+
1 CCR 1
|
| 180 |
+
|
1k1n/1k1n_ligand.sdf
ADDED
|
@@ -0,0 +1,170 @@
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1k1n_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
81 83 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-1.1610 15.9210 18.7940 C 0 0 0 0 0
|
| 6 |
+
-2.2510 16.2390 17.9570 C 0 0 0 0 0
|
| 7 |
+
-2.4960 15.4860 16.8130 C 0 0 0 0 0
|
| 8 |
+
-0.6290 14.0620 17.3350 C 0 0 0 0 0
|
| 9 |
+
-0.3600 14.8220 18.4810 C 0 0 0 0 0
|
| 10 |
+
-1.7020 14.3660 16.4650 C 0 0 0 0 0
|
| 11 |
+
-1.9850 13.5460 15.2290 C 0 0 0 0 0
|
| 12 |
+
-2.6060 14.0610 14.1910 N 0 0 0 0 0
|
| 13 |
+
-1.6020 12.2830 15.1330 N 0 0 0 0 0
|
| 14 |
+
-0.8830 16.7710 20.0210 C 0 0 0 0 0
|
| 15 |
+
0.1430 17.8700 19.6190 C 0 0 0 0 0
|
| 16 |
+
-0.5090 18.8490 18.7710 N 0 0 0 0 0
|
| 17 |
+
0.5480 18.6580 20.8480 C 0 0 0 0 0
|
| 18 |
+
-0.2610 18.7330 21.7610 O 0 0 0 0 0
|
| 19 |
+
1.7630 19.2570 20.9060 N 0 0 0 0 0
|
| 20 |
+
2.1020 20.0820 22.0650 C 0 0 0 0 0
|
| 21 |
+
2.1600 21.5440 21.6280 C 0 0 0 0 0
|
| 22 |
+
3.1630 21.6850 20.4460 C 0 0 0 0 0
|
| 23 |
+
2.6840 20.8010 19.2710 C 0 0 0 0 0
|
| 24 |
+
2.6240 19.3280 19.7190 C 0 0 0 0 0
|
| 25 |
+
-0.6380 20.4090 15.4420 N 0 0 0 0 0
|
| 26 |
+
-0.5480 21.9710 14.9630 S 0 0 0 0 0
|
| 27 |
+
-1.7860 22.5480 15.4320 O 0 0 0 0 0
|
| 28 |
+
-0.4330 21.9640 13.5300 O 0 0 0 0 0
|
| 29 |
+
0.9230 22.5860 15.6520 C 0 0 0 0 0
|
| 30 |
+
0.8790 23.6800 16.5800 C 0 0 0 0 0
|
| 31 |
+
2.0660 24.1870 17.1710 C 0 0 0 0 0
|
| 32 |
+
3.3110 23.6100 16.8580 C 0 0 0 0 0
|
| 33 |
+
3.3440 22.5220 15.9590 C 0 0 0 0 0
|
| 34 |
+
2.1830 22.0070 15.3510 C 0 0 0 0 0
|
| 35 |
+
-0.4370 24.3850 16.9880 C 0 0 0 0 0
|
| 36 |
+
2.0720 25.3710 18.1710 C 0 0 0 0 0
|
| 37 |
+
2.5000 20.8290 14.3960 C 0 0 0 0 0
|
| 38 |
+
4.4940 24.1220 17.4630 O 0 0 0 0 0
|
| 39 |
+
5.7750 23.4850 17.2280 C 0 0 0 0 0
|
| 40 |
+
-1.0760 20.0720 16.7690 C 0 0 0 0 0
|
| 41 |
+
-2.5130 19.5450 16.6440 C 0 0 0 0 0
|
| 42 |
+
-3.3320 19.8250 17.8750 C 0 0 0 0 0
|
| 43 |
+
-4.5130 19.4630 17.8290 O 0 0 0 0 0
|
| 44 |
+
-2.8240 20.4280 18.8600 O 0 0 0 0 0
|
| 45 |
+
-0.2230 19.0280 17.4520 C 0 0 0 0 0
|
| 46 |
+
0.6400 18.4310 16.8340 O 0 0 0 0 0
|
| 47 |
+
-2.9026 17.0763 18.2070 H 0 0 0 0 0
|
| 48 |
+
-3.3254 15.7670 16.1639 H 0 0 0 0 0
|
| 49 |
+
0.0095 13.2086 17.1065 H 0 0 0 0 0
|
| 50 |
+
0.4753 14.5547 19.1283 H 0 0 0 0 0
|
| 51 |
+
-2.7723 13.4909 13.3617 H 0 0 0 0 0
|
| 52 |
+
-1.7925 11.7557 14.2809 H 0 0 0 0 0
|
| 53 |
+
-1.1163 11.8368 15.9111 H 0 0 0 0 0
|
| 54 |
+
-0.4801 16.1541 20.8242 H 0 0 0 0 0
|
| 55 |
+
-1.8049 17.2284 20.3802 H 0 0 0 0 0
|
| 56 |
+
0.9866 17.3797 19.1331 H 0 0 0 0 0
|
| 57 |
+
-1.2270 19.4407 19.1889 H 0 0 0 0 0
|
| 58 |
+
3.0690 19.7774 22.4652 H 0 0 0 0 0
|
| 59 |
+
1.3462 19.9579 22.8406 H 0 0 0 0 0
|
| 60 |
+
2.4890 22.1627 22.4629 H 0 0 0 0 0
|
| 61 |
+
1.1701 21.8701 21.3089 H 0 0 0 0 0
|
| 62 |
+
4.1550 21.3657 20.7656 H 0 0 0 0 0
|
| 63 |
+
3.2110 22.7261 20.1269 H 0 0 0 0 0
|
| 64 |
+
3.3817 20.8972 18.4391 H 0 0 0 0 0
|
| 65 |
+
1.6911 21.1238 18.9578 H 0 0 0 0 0
|
| 66 |
+
2.2212 18.7049 18.9205 H 0 0 0 0 0
|
| 67 |
+
3.6236 18.9618 19.9531 H 0 0 0 0 0
|
| 68 |
+
-0.3805 19.6664 14.7919 H 0 0 0 0 0
|
| 69 |
+
4.3050 22.0630 15.7266 H 0 0 0 0 0
|
| 70 |
+
-0.9100 24.8094 16.1024 H 0 0 0 0 0
|
| 71 |
+
-1.1085 23.6601 17.4480 H 0 0 0 0 0
|
| 72 |
+
-0.2160 25.1803 17.6999 H 0 0 0 0 0
|
| 73 |
+
1.6552 26.2549 17.6881 H 0 0 0 0 0
|
| 74 |
+
1.4692 25.1127 19.0416 H 0 0 0 0 0
|
| 75 |
+
3.0959 25.5753 18.4841 H 0 0 0 0 0
|
| 76 |
+
1.9717 19.9372 14.7333 H 0 0 0 0 0
|
| 77 |
+
2.1771 21.0842 13.3867 H 0 0 0 0 0
|
| 78 |
+
3.5734 20.6397 14.3985 H 0 0 0 0 0
|
| 79 |
+
5.7340 22.4516 17.5722 H 0 0 0 0 0
|
| 80 |
+
5.9993 23.5055 16.1615 H 0 0 0 0 0
|
| 81 |
+
6.5514 24.0207 17.7742 H 0 0 0 0 0
|
| 82 |
+
-1.0015 20.9666 17.3873 H 0 0 0 0 0
|
| 83 |
+
-2.4666 18.4647 16.5067 H 0 0 0 0 0
|
| 84 |
+
-2.9861 20.0485 15.8009 H 0 0 0 0 0
|
| 85 |
+
-1.8991 20.6111 18.6794 H 0 0 0 0 0
|
| 86 |
+
1 10 1 0 0 0
|
| 87 |
+
1 5 4 0 0 0
|
| 88 |
+
1 2 4 0 0 0
|
| 89 |
+
2 3 4 0 0 0
|
| 90 |
+
3 6 4 0 0 0
|
| 91 |
+
6 4 4 0 0 0
|
| 92 |
+
6 7 1 0 0 0
|
| 93 |
+
7 9 1 0 0 0
|
| 94 |
+
7 8 2 0 0 0
|
| 95 |
+
4 5 4 0 0 0
|
| 96 |
+
10 11 1 0 0 0
|
| 97 |
+
11 13 1 0 0 0
|
| 98 |
+
11 12 1 0 0 0
|
| 99 |
+
12 41 1 0 0 0
|
| 100 |
+
41 42 2 0 0 0
|
| 101 |
+
41 36 1 0 0 0
|
| 102 |
+
36 37 1 0 0 0
|
| 103 |
+
36 21 1 0 0 0
|
| 104 |
+
21 22 1 0 0 0
|
| 105 |
+
22 25 1 0 0 0
|
| 106 |
+
22 24 2 0 0 0
|
| 107 |
+
22 23 2 0 0 0
|
| 108 |
+
25 30 4 0 0 0
|
| 109 |
+
25 26 4 0 0 0
|
| 110 |
+
26 31 1 0 0 0
|
| 111 |
+
26 27 4 0 0 0
|
| 112 |
+
27 32 1 0 0 0
|
| 113 |
+
27 28 4 0 0 0
|
| 114 |
+
28 34 1 0 0 0
|
| 115 |
+
28 29 4 0 0 0
|
| 116 |
+
29 30 4 0 0 0
|
| 117 |
+
30 33 1 0 0 0
|
| 118 |
+
34 35 1 0 0 0
|
| 119 |
+
37 38 1 0 0 0
|
| 120 |
+
38 40 1 0 0 0
|
| 121 |
+
38 39 2 0 0 0
|
| 122 |
+
13 15 1 0 0 0
|
| 123 |
+
13 14 2 0 0 0
|
| 124 |
+
15 20 1 0 0 0
|
| 125 |
+
15 16 1 0 0 0
|
| 126 |
+
16 17 1 0 0 0
|
| 127 |
+
17 18 1 0 0 0
|
| 128 |
+
18 19 1 0 0 0
|
| 129 |
+
19 20 1 0 0 0
|
| 130 |
+
2 43 1 0 0 0
|
| 131 |
+
3 44 1 0 0 0
|
| 132 |
+
4 45 1 0 0 0
|
| 133 |
+
5 46 1 0 0 0
|
| 134 |
+
8 47 1 0 0 0
|
| 135 |
+
9 48 1 0 0 0
|
| 136 |
+
9 49 1 0 0 0
|
| 137 |
+
10 50 1 0 0 0
|
| 138 |
+
10 51 1 0 0 0
|
| 139 |
+
11 52 1 0 0 0
|
| 140 |
+
12 53 1 0 0 0
|
| 141 |
+
16 54 1 0 0 0
|
| 142 |
+
16 55 1 0 0 0
|
| 143 |
+
17 56 1 0 0 0
|
| 144 |
+
17 57 1 0 0 0
|
| 145 |
+
18 58 1 0 0 0
|
| 146 |
+
18 59 1 0 0 0
|
| 147 |
+
19 60 1 0 0 0
|
| 148 |
+
19 61 1 0 0 0
|
| 149 |
+
20 62 1 0 0 0
|
| 150 |
+
20 63 1 0 0 0
|
| 151 |
+
21 64 1 0 0 0
|
| 152 |
+
29 65 1 0 0 0
|
| 153 |
+
31 66 1 0 0 0
|
| 154 |
+
31 67 1 0 0 0
|
| 155 |
+
31 68 1 0 0 0
|
| 156 |
+
32 69 1 0 0 0
|
| 157 |
+
32 70 1 0 0 0
|
| 158 |
+
32 71 1 0 0 0
|
| 159 |
+
33 72 1 0 0 0
|
| 160 |
+
33 73 1 0 0 0
|
| 161 |
+
33 74 1 0 0 0
|
| 162 |
+
35 75 1 0 0 0
|
| 163 |
+
35 76 1 0 0 0
|
| 164 |
+
35 77 1 0 0 0
|
| 165 |
+
36 78 1 0 0 0
|
| 166 |
+
37 79 1 0 0 0
|
| 167 |
+
37 80 1 0 0 0
|
| 168 |
+
40 81 1 0 0 0
|
| 169 |
+
M END
|
| 170 |
+
$$$$
|
1k1n/1k1n_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1k1n/1k1n_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lf2/1lf2_ligand.mol2
ADDED
|
@@ -0,0 +1,178 @@
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
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|
|
|
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|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1lf2_ligand
|
| 7 |
+
80 82 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C 34.1440 28.6370 9.3600 C.ar 1 R37 -0.0230
|
| 14 |
+
2 C8 34.4550 29.8420 9.9500 C.ar 1 R37 0.0966
|
| 15 |
+
3 C9 35.7770 30.3190 9.8970 C.ar 1 R37 -0.0230
|
| 16 |
+
4 C10 36.7600 29.5670 9.2490 C.ar 1 R37 -0.0759
|
| 17 |
+
5 C13 36.4420 28.3600 8.6640 C.ar 1 R37 -0.0862
|
| 18 |
+
6 C14 35.1420 27.8940 8.7150 C.ar 1 R37 -0.0759
|
| 19 |
+
7 C3 36.1130 31.6830 10.4710 C.3 1 R37 -0.0348
|
| 20 |
+
8 C2 32.7130 28.1320 9.4040 C.3 1 R37 -0.0348
|
| 21 |
+
9 C16 30.5510 37.7260 14.5130 C.ar 1 R37 0.0361
|
| 22 |
+
10 C26 30.8790 37.9050 15.8680 C.ar 1 R37 -0.0535
|
| 23 |
+
11 C27 30.2110 38.8700 16.6540 C.ar 1 R37 -0.0384
|
| 24 |
+
12 C28 29.2110 39.6630 16.0890 C.ar 1 R37 0.0407
|
| 25 |
+
13 C29 28.8810 39.4870 14.7410 C.ar 1 R37 -0.0384
|
| 26 |
+
14 N1 28.5020 40.7120 16.9060 N.pl3 1 R37 -0.3340
|
| 27 |
+
15 C30 29.5450 38.5360 13.9670 C.ar 1 R37 -0.0535
|
| 28 |
+
16 O1 33.3890 30.5060 10.5520 O.3 1 R37 -0.3054
|
| 29 |
+
17 C34 32.6180 31.4240 9.8390 C.3 1 R37 0.1556
|
| 30 |
+
18 C25 31.8510 32.3740 10.7840 C.2 1 R37 0.2068
|
| 31 |
+
19 O26 31.3740 33.4380 10.3640 O.2 1 R37 -0.3941
|
| 32 |
+
20 N16 31.7520 31.9970 12.0620 N.am 1 R37 -0.2772
|
| 33 |
+
21 C15 31.4780 32.7950 14.4050 C.3 1 R37 0.0820
|
| 34 |
+
22 O14 31.7720 31.5180 14.9670 O.3 1 R37 -0.3893
|
| 35 |
+
23 C12 32.8010 33.4970 14.2870 C.3 1 R37 -0.0015
|
| 36 |
+
24 C4 32.8490 34.9690 13.9220 C.3 1 R37 0.0439
|
| 37 |
+
25 C5 34.0810 35.7040 14.4990 C.3 1 R37 -0.0275
|
| 38 |
+
26 C6 35.4800 35.0900 14.3640 C.3 1 R37 -0.0446
|
| 39 |
+
27 C11 35.7850 34.9700 12.8550 C.3 1 R37 -0.0626
|
| 40 |
+
28 C7 36.4740 36.0300 14.9950 C.3 1 R37 -0.0626
|
| 41 |
+
29 N3 31.6080 35.6450 14.3040 N.am 1 R37 -0.2849
|
| 42 |
+
30 C1 31.2080 36.7690 13.7090 C.2 1 R37 0.1954
|
| 43 |
+
31 O2 31.3480 36.9550 12.4870 O.2 1 R37 -0.3909
|
| 44 |
+
32 C17 30.8170 32.5980 12.9980 C.3 1 R37 0.0774
|
| 45 |
+
33 C18 29.5810 31.6840 13.1110 C.3 1 R37 0.0064
|
| 46 |
+
34 C19 28.9220 31.3680 11.7820 C.ar 1 R37 -0.0408
|
| 47 |
+
35 C20 28.1970 32.3300 11.1050 C.ar 1 R37 -0.0603
|
| 48 |
+
36 C21 27.5980 32.0270 9.8720 C.ar 1 R37 -0.0686
|
| 49 |
+
37 C22 27.7320 30.7570 9.3070 C.ar 1 R37 -0.0687
|
| 50 |
+
38 C23 28.4590 29.7790 9.9750 C.ar 1 R37 -0.0686
|
| 51 |
+
39 C24 29.0460 30.0930 11.2140 C.ar 1 R37 -0.0603
|
| 52 |
+
40 H1 37.7788 29.9348 9.2060 H 1 R37 0.0471
|
| 53 |
+
41 H2 37.2091 27.7783 8.1657 H 1 R37 0.0489
|
| 54 |
+
42 H3 34.8922 26.9461 8.2523 H 1 R37 0.0471
|
| 55 |
+
43 H4 35.2158 32.1155 10.9379 H 1 R37 0.0366
|
| 56 |
+
44 H5 36.4616 32.3446 9.6643 H 1 R37 0.0366
|
| 57 |
+
45 H6 36.9051 31.5777 11.2270 H 1 R37 0.0366
|
| 58 |
+
46 H7 32.6502 27.1628 8.8875 H 1 R37 0.0366
|
| 59 |
+
47 H8 32.0529 28.8568 8.9051 H 1 R37 0.0366
|
| 60 |
+
48 H9 32.3991 28.0104 10.4512 H 1 R37 0.0366
|
| 61 |
+
49 H10 31.6548 37.2945 16.3157 H 1 R37 0.0636
|
| 62 |
+
50 H11 30.4755 38.9949 17.6978 H 1 R37 0.0530
|
| 63 |
+
51 H12 28.1026 40.0950 14.2944 H 1 R37 0.0530
|
| 64 |
+
52 H13 28.7442 40.8424 17.8986 H 1 R37 0.1738
|
| 65 |
+
53 H14 27.7752 41.2986 16.4719 H 1 R37 0.1738
|
| 66 |
+
54 H15 29.2783 38.4206 12.9227 H 1 R37 0.0636
|
| 67 |
+
55 H16 31.8939 30.8764 9.2179 H 1 R37 0.0853
|
| 68 |
+
56 H17 33.2789 32.0200 9.1925 H 1 R37 0.0853
|
| 69 |
+
57 H18 32.3502 31.2660 12.3902 H 1 R37 0.1857
|
| 70 |
+
58 H19 30.7988 33.3627 15.0580 H 1 R37 0.0619
|
| 71 |
+
59 H20 32.1806 31.6337 15.8168 H 1 R37 0.2099
|
| 72 |
+
60 H21 33.3778 32.9606 13.5192 H 1 R37 0.0313
|
| 73 |
+
61 H22 33.3027 33.3948 15.2606 H 1 R37 0.0313
|
| 74 |
+
62 H23 32.9286 35.0240 12.8263 H 1 R37 0.0556
|
| 75 |
+
63 H24 33.8957 35.8354 15.5753 H 1 R37 0.0290
|
| 76 |
+
64 H25 34.1193 36.6889 14.0106 H 1 R37 0.0290
|
| 77 |
+
65 H26 35.5226 34.1034 14.8485 H 1 R37 0.0296
|
| 78 |
+
66 H27 36.7844 34.5318 12.7167 H 1 R37 0.0232
|
| 79 |
+
67 H28 35.7555 35.9685 12.3944 H 1 R37 0.0232
|
| 80 |
+
68 H29 35.0324 34.3242 12.3790 H 1 R37 0.0232
|
| 81 |
+
69 H30 36.2620 36.1198 16.0706 H 1 R37 0.0232
|
| 82 |
+
70 H31 36.3942 37.0198 14.5217 H 1 R37 0.0232
|
| 83 |
+
71 H32 37.4915 35.6368 14.8535 H 1 R37 0.0232
|
| 84 |
+
72 H33 31.0447 35.2529 15.0313 H 1 R37 0.1844
|
| 85 |
+
73 H34 30.5062 33.5807 12.6138 H 1 R37 0.0604
|
| 86 |
+
74 H35 28.8405 32.1820 13.7541 H 1 R37 0.0449
|
| 87 |
+
75 H36 29.8927 30.7371 13.5759 H 1 R37 0.0449
|
| 88 |
+
76 H37 28.0903 33.3225 11.5276 H 1 R37 0.0557
|
| 89 |
+
77 H38 27.0253 32.7871 9.3530 H 1 R37 0.0599
|
| 90 |
+
78 H39 27.2709 30.5350 8.3514 H 1 R37 0.0559
|
| 91 |
+
79 H40 28.5720 28.7892 9.5477 H 1 R37 0.0599
|
| 92 |
+
80 H41 29.6075 29.3308 11.7419 H 1 R37 0.0557
|
| 93 |
+
@<TRIPOS>BOND
|
| 94 |
+
1 1 8 1
|
| 95 |
+
2 1 6 ar
|
| 96 |
+
3 1 2 ar
|
| 97 |
+
4 2 16 1
|
| 98 |
+
5 2 3 ar
|
| 99 |
+
6 3 7 1
|
| 100 |
+
7 3 4 ar
|
| 101 |
+
8 4 5 ar
|
| 102 |
+
9 5 6 ar
|
| 103 |
+
10 16 17 1
|
| 104 |
+
11 17 18 1
|
| 105 |
+
12 18 20 am
|
| 106 |
+
13 18 19 2
|
| 107 |
+
14 20 32 1
|
| 108 |
+
15 32 33 1
|
| 109 |
+
16 32 21 1
|
| 110 |
+
17 21 23 1
|
| 111 |
+
18 21 22 1
|
| 112 |
+
19 23 24 1
|
| 113 |
+
20 24 29 1
|
| 114 |
+
21 24 25 1
|
| 115 |
+
22 25 26 1
|
| 116 |
+
23 26 28 1
|
| 117 |
+
24 26 27 1
|
| 118 |
+
25 29 30 am
|
| 119 |
+
26 30 31 2
|
| 120 |
+
27 30 9 1
|
| 121 |
+
28 9 15 ar
|
| 122 |
+
29 9 10 ar
|
| 123 |
+
30 10 11 ar
|
| 124 |
+
31 11 12 ar
|
| 125 |
+
32 12 14 1
|
| 126 |
+
33 12 13 ar
|
| 127 |
+
34 13 15 ar
|
| 128 |
+
35 33 34 1
|
| 129 |
+
36 34 39 ar
|
| 130 |
+
37 34 35 ar
|
| 131 |
+
38 35 36 ar
|
| 132 |
+
39 36 37 ar
|
| 133 |
+
40 37 38 ar
|
| 134 |
+
41 38 39 ar
|
| 135 |
+
42 4 40 1
|
| 136 |
+
43 5 41 1
|
| 137 |
+
44 6 42 1
|
| 138 |
+
45 7 43 1
|
| 139 |
+
46 7 44 1
|
| 140 |
+
47 7 45 1
|
| 141 |
+
48 8 46 1
|
| 142 |
+
49 8 47 1
|
| 143 |
+
50 8 48 1
|
| 144 |
+
51 10 49 1
|
| 145 |
+
52 11 50 1
|
| 146 |
+
53 13 51 1
|
| 147 |
+
54 14 52 1
|
| 148 |
+
55 14 53 1
|
| 149 |
+
56 15 54 1
|
| 150 |
+
57 17 55 1
|
| 151 |
+
58 17 56 1
|
| 152 |
+
59 20 57 1
|
| 153 |
+
60 21 58 1
|
| 154 |
+
61 22 59 1
|
| 155 |
+
62 23 60 1
|
| 156 |
+
63 23 61 1
|
| 157 |
+
64 24 62 1
|
| 158 |
+
65 25 63 1
|
| 159 |
+
66 25 64 1
|
| 160 |
+
67 26 65 1
|
| 161 |
+
68 27 66 1
|
| 162 |
+
69 27 67 1
|
| 163 |
+
70 27 68 1
|
| 164 |
+
71 28 69 1
|
| 165 |
+
72 28 70 1
|
| 166 |
+
73 28 71 1
|
| 167 |
+
74 29 72 1
|
| 168 |
+
75 32 73 1
|
| 169 |
+
76 33 74 1
|
| 170 |
+
77 33 75 1
|
| 171 |
+
78 35 76 1
|
| 172 |
+
79 36 77 1
|
| 173 |
+
80 37 78 1
|
| 174 |
+
81 38 79 1
|
| 175 |
+
82 39 80 1
|
| 176 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 177 |
+
1 R37 1
|
| 178 |
+
|
1lf2/1lf2_ligand.sdf
ADDED
|
@@ -0,0 +1,168 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1lf2_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
80 82 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
34.1440 28.6370 9.3600 C 0 0 0 0 0
|
| 6 |
+
34.4550 29.8420 9.9500 C 0 0 0 0 0
|
| 7 |
+
35.7770 30.3190 9.8970 C 0 0 0 0 0
|
| 8 |
+
36.7600 29.5670 9.2490 C 0 0 0 0 0
|
| 9 |
+
36.4420 28.3600 8.6640 C 0 0 0 0 0
|
| 10 |
+
35.1420 27.8940 8.7150 C 0 0 0 0 0
|
| 11 |
+
36.1130 31.6830 10.4710 C 0 0 0 0 0
|
| 12 |
+
32.7130 28.1320 9.4040 C 0 0 0 0 0
|
| 13 |
+
30.5510 37.7260 14.5130 C 0 0 0 0 0
|
| 14 |
+
30.8790 37.9050 15.8680 C 0 0 0 0 0
|
| 15 |
+
30.2110 38.8700 16.6540 C 0 0 0 0 0
|
| 16 |
+
29.2110 39.6630 16.0890 C 0 0 0 0 0
|
| 17 |
+
28.8810 39.4870 14.7410 C 0 0 0 0 0
|
| 18 |
+
28.5020 40.7120 16.9060 N 0 0 0 0 0
|
| 19 |
+
29.5450 38.5360 13.9670 C 0 0 0 0 0
|
| 20 |
+
33.3890 30.5060 10.5520 O 0 0 0 0 0
|
| 21 |
+
32.6180 31.4240 9.8390 C 0 0 0 0 0
|
| 22 |
+
31.8510 32.3740 10.7840 C 0 0 0 0 0
|
| 23 |
+
31.3740 33.4380 10.3640 O 0 0 0 0 0
|
| 24 |
+
31.7520 31.9970 12.0620 N 0 0 0 0 0
|
| 25 |
+
31.4780 32.7950 14.4050 C 0 0 0 0 0
|
| 26 |
+
31.7720 31.5180 14.9670 O 0 0 0 0 0
|
| 27 |
+
32.8010 33.4970 14.2870 C 0 0 0 0 0
|
| 28 |
+
32.8490 34.9690 13.9220 C 0 0 0 0 0
|
| 29 |
+
34.0810 35.7040 14.4990 C 0 0 0 0 0
|
| 30 |
+
35.4800 35.0900 14.3640 C 0 0 0 0 0
|
| 31 |
+
35.7850 34.9700 12.8550 C 0 0 0 0 0
|
| 32 |
+
36.4740 36.0300 14.9950 C 0 0 0 0 0
|
| 33 |
+
31.6080 35.6450 14.3040 N 0 0 0 0 0
|
| 34 |
+
31.2080 36.7690 13.7090 C 0 0 0 0 0
|
| 35 |
+
31.3480 36.9550 12.4870 O 0 0 0 0 0
|
| 36 |
+
30.8170 32.5980 12.9980 C 0 0 0 0 0
|
| 37 |
+
29.5810 31.6840 13.1110 C 0 0 0 0 0
|
| 38 |
+
28.9220 31.3680 11.7820 C 0 0 0 0 0
|
| 39 |
+
28.1970 32.3300 11.1050 C 0 0 0 0 0
|
| 40 |
+
27.5980 32.0270 9.8720 C 0 0 0 0 0
|
| 41 |
+
27.7320 30.7570 9.3070 C 0 0 0 0 0
|
| 42 |
+
28.4590 29.7790 9.9750 C 0 0 0 0 0
|
| 43 |
+
29.0460 30.0930 11.2140 C 0 0 0 0 0
|
| 44 |
+
37.7844 29.9368 9.2057 H 0 0 0 0 0
|
| 45 |
+
37.2133 27.7751 8.1629 H 0 0 0 0 0
|
| 46 |
+
34.8908 26.9408 8.2498 H 0 0 0 0 0
|
| 47 |
+
35.5346 32.4469 9.9514 H 0 0 0 0 0
|
| 48 |
+
35.8678 31.6993 11.5329 H 0 0 0 0 0
|
| 49 |
+
37.1771 31.8790 10.3395 H 0 0 0 0 0
|
| 50 |
+
32.3367 28.0214 8.3870 H 0 0 0 0 0
|
| 51 |
+
32.6850 27.1670 9.9101 H 0 0 0 0 0
|
| 52 |
+
32.0935 28.8463 9.9463 H 0 0 0 0 0
|
| 53 |
+
31.6591 37.2911 16.3182 H 0 0 0 0 0
|
| 54 |
+
30.4769 38.9956 17.7036 H 0 0 0 0 0
|
| 55 |
+
28.0983 40.0984 14.2919 H 0 0 0 0 0
|
| 56 |
+
28.7509 40.8500 17.8855 H 0 0 0 0 0
|
| 57 |
+
27.7732 41.2841 16.4795 H 0 0 0 0 0
|
| 58 |
+
29.2768 38.4200 12.9169 H 0 0 0 0 0
|
| 59 |
+
31.8927 30.8737 9.2396 H 0 0 0 0 0
|
| 60 |
+
33.2822 32.0210 9.2141 H 0 0 0 0 0
|
| 61 |
+
32.3622 31.2513 12.3968 H 0 0 0 0 0
|
| 62 |
+
30.7832 33.3739 15.0134 H 0 0 0 0 0
|
| 63 |
+
32.1772 31.6348 15.8294 H 0 0 0 0 0
|
| 64 |
+
33.3032 32.9947 13.4602 H 0 0 0 0 0
|
| 65 |
+
33.2242 33.4512 15.2904 H 0 0 0 0 0
|
| 66 |
+
32.9514 35.0099 12.8376 H 0 0 0 0 0
|
| 67 |
+
33.9005 35.7322 15.5736 H 0 0 0 0 0
|
| 68 |
+
34.1358 36.6303 13.9271 H 0 0 0 0 0
|
| 69 |
+
35.5365 34.1152 14.8484 H 0 0 0 0 0
|
| 70 |
+
35.0386 34.3300 12.3845 H 0 0 0 0 0
|
| 71 |
+
35.7555 35.9600 12.3998 H 0 0 0 0 0
|
| 72 |
+
36.7755 34.5357 12.7192 H 0 0 0 0 0
|
| 73 |
+
36.4372 36.9921 14.4841 H 0 0 0 0 0
|
| 74 |
+
36.2257 36.1664 16.0475 H 0 0 0 0 0
|
| 75 |
+
37.4758 35.6092 14.9083 H 0 0 0 0 0
|
| 76 |
+
31.0335 35.2450 15.0459 H 0 0 0 0 0
|
| 77 |
+
30.5228 33.5819 12.6326 H 0 0 0 0 0
|
| 78 |
+
28.8451 32.2100 13.7192 H 0 0 0 0 0
|
| 79 |
+
29.9164 30.7388 13.5378 H 0 0 0 0 0
|
| 80 |
+
28.0898 33.3280 11.5300 H 0 0 0 0 0
|
| 81 |
+
27.0221 32.7913 9.3501 H 0 0 0 0 0
|
| 82 |
+
27.2683 30.5337 8.3461 H 0 0 0 0 0
|
| 83 |
+
28.5726 28.7837 9.5453 H 0 0 0 0 0
|
| 84 |
+
29.6106 29.3265 11.7449 H 0 0 0 0 0
|
| 85 |
+
1 8 1 0 0 0
|
| 86 |
+
1 6 4 0 0 0
|
| 87 |
+
1 2 4 0 0 0
|
| 88 |
+
2 16 1 0 0 0
|
| 89 |
+
2 3 4 0 0 0
|
| 90 |
+
3 7 1 0 0 0
|
| 91 |
+
3 4 4 0 0 0
|
| 92 |
+
4 5 4 0 0 0
|
| 93 |
+
5 6 4 0 0 0
|
| 94 |
+
16 17 1 0 0 0
|
| 95 |
+
17 18 1 0 0 0
|
| 96 |
+
18 20 1 0 0 0
|
| 97 |
+
18 19 2 0 0 0
|
| 98 |
+
20 32 1 0 0 0
|
| 99 |
+
32 33 1 0 0 0
|
| 100 |
+
32 21 1 0 0 0
|
| 101 |
+
21 23 1 0 0 0
|
| 102 |
+
21 22 1 0 0 0
|
| 103 |
+
23 24 1 0 0 0
|
| 104 |
+
24 29 1 0 0 0
|
| 105 |
+
24 25 1 0 0 0
|
| 106 |
+
25 26 1 0 0 0
|
| 107 |
+
26 28 1 0 0 0
|
| 108 |
+
26 27 1 0 0 0
|
| 109 |
+
29 30 1 0 0 0
|
| 110 |
+
30 31 2 0 0 0
|
| 111 |
+
30 9 1 0 0 0
|
| 112 |
+
9 15 4 0 0 0
|
| 113 |
+
9 10 4 0 0 0
|
| 114 |
+
10 11 4 0 0 0
|
| 115 |
+
11 12 4 0 0 0
|
| 116 |
+
12 14 1 0 0 0
|
| 117 |
+
12 13 4 0 0 0
|
| 118 |
+
13 15 4 0 0 0
|
| 119 |
+
33 34 1 0 0 0
|
| 120 |
+
34 39 4 0 0 0
|
| 121 |
+
34 35 4 0 0 0
|
| 122 |
+
35 36 4 0 0 0
|
| 123 |
+
36 37 4 0 0 0
|
| 124 |
+
37 38 4 0 0 0
|
| 125 |
+
38 39 4 0 0 0
|
| 126 |
+
4 40 1 0 0 0
|
| 127 |
+
5 41 1 0 0 0
|
| 128 |
+
6 42 1 0 0 0
|
| 129 |
+
7 43 1 0 0 0
|
| 130 |
+
7 44 1 0 0 0
|
| 131 |
+
7 45 1 0 0 0
|
| 132 |
+
8 46 1 0 0 0
|
| 133 |
+
8 47 1 0 0 0
|
| 134 |
+
8 48 1 0 0 0
|
| 135 |
+
10 49 1 0 0 0
|
| 136 |
+
11 50 1 0 0 0
|
| 137 |
+
13 51 1 0 0 0
|
| 138 |
+
14 52 1 0 0 0
|
| 139 |
+
14 53 1 0 0 0
|
| 140 |
+
15 54 1 0 0 0
|
| 141 |
+
17 55 1 0 0 0
|
| 142 |
+
17 56 1 0 0 0
|
| 143 |
+
20 57 1 0 0 0
|
| 144 |
+
21 58 1 0 0 0
|
| 145 |
+
22 59 1 0 0 0
|
| 146 |
+
23 60 1 0 0 0
|
| 147 |
+
23 61 1 0 0 0
|
| 148 |
+
24 62 1 0 0 0
|
| 149 |
+
25 63 1 0 0 0
|
| 150 |
+
25 64 1 0 0 0
|
| 151 |
+
26 65 1 0 0 0
|
| 152 |
+
27 66 1 0 0 0
|
| 153 |
+
27 67 1 0 0 0
|
| 154 |
+
27 68 1 0 0 0
|
| 155 |
+
28 69 1 0 0 0
|
| 156 |
+
28 70 1 0 0 0
|
| 157 |
+
28 71 1 0 0 0
|
| 158 |
+
29 72 1 0 0 0
|
| 159 |
+
32 73 1 0 0 0
|
| 160 |
+
33 74 1 0 0 0
|
| 161 |
+
33 75 1 0 0 0
|
| 162 |
+
35 76 1 0 0 0
|
| 163 |
+
36 77 1 0 0 0
|
| 164 |
+
37 78 1 0 0 0
|
| 165 |
+
38 79 1 0 0 0
|
| 166 |
+
39 80 1 0 0 0
|
| 167 |
+
M END
|
| 168 |
+
$$$$
|
1lf2/1lf2_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lf2/1lf2_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1mm7/1mm7_ligand.mol2
ADDED
|
@@ -0,0 +1,56 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1mm7_ligand
|
| 7 |
+
20 20 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C01 76.3200 25.9240 44.9670 C.2 1 QUS 0.0866
|
| 14 |
+
2 C02 76.2290 26.2240 43.4660 C.3 1 QUS 0.0520
|
| 15 |
+
3 C03 77.6700 26.5420 43.0440 C.3 1 QUS 0.1233
|
| 16 |
+
4 C04 77.9500 24.8220 41.1760 C.2 1 QUS 0.3201
|
| 17 |
+
5 C05 77.3830 26.2010 39.4900 C.2 1 QUS 0.3771
|
| 18 |
+
6 NP3 75.2300 27.3370 43.3670 N.4 1 QUS 0.2342
|
| 19 |
+
7 N14 77.9110 26.1050 41.6570 N.am 1 QUS -0.0915
|
| 20 |
+
8 N15 77.6320 24.9180 39.8630 N.am 1 QUS -0.1566
|
| 21 |
+
9 O16 75.5970 26.5530 45.7490 O.co2 1 QUS -0.5642
|
| 22 |
+
10 O17 77.1170 25.0430 45.3260 O.co2 1 QUS -0.5642
|
| 23 |
+
11 O18 78.2130 23.8670 41.8330 O.2 1 QUS -0.3935
|
| 24 |
+
12 O19 77.0700 26.6560 38.4150 O.2 1 QUS -0.3705
|
| 25 |
+
13 O20 77.5450 26.9980 40.5930 O.3 1 QUS -0.1145
|
| 26 |
+
14 H1 75.8660 25.3565 42.8954 H 1 QUS 0.1046
|
| 27 |
+
15 H2 78.3673 26.0185 43.7146 H 1 QUS 0.0630
|
| 28 |
+
16 H3 77.8370 27.6269 43.1157 H 1 QUS 0.0630
|
| 29 |
+
17 H4 74.3273 27.0062 43.6700 H 1 QUS 0.2011
|
| 30 |
+
18 H5 75.1694 27.6501 42.4108 H 1 QUS 0.2011
|
| 31 |
+
19 H6 75.5213 28.1032 43.9537 H 1 QUS 0.2011
|
| 32 |
+
20 H7 77.5858 24.1364 39.2409 H 1 QUS 0.2278
|
| 33 |
+
@<TRIPOS>BOND
|
| 34 |
+
1 2 1 1
|
| 35 |
+
2 1 9 ar
|
| 36 |
+
3 1 10 ar
|
| 37 |
+
4 3 2 1
|
| 38 |
+
5 2 6 1
|
| 39 |
+
6 7 3 1
|
| 40 |
+
7 13 7 1
|
| 41 |
+
8 5 13 1
|
| 42 |
+
9 5 12 2
|
| 43 |
+
10 4 11 2
|
| 44 |
+
11 8 5 am
|
| 45 |
+
12 8 4 am
|
| 46 |
+
13 7 4 am
|
| 47 |
+
14 2 14 1
|
| 48 |
+
15 3 15 1
|
| 49 |
+
16 3 16 1
|
| 50 |
+
17 6 17 1
|
| 51 |
+
18 6 18 1
|
| 52 |
+
19 6 19 1
|
| 53 |
+
20 8 20 1
|
| 54 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 55 |
+
1 QUS 1
|
| 56 |
+
|
1mm7/1mm7_ligand.sdf
ADDED
|
@@ -0,0 +1,48 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1mm7_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
21 21 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
76.3200 25.9240 44.9670 C 0 0 0 0 0
|
| 6 |
+
76.2290 26.2240 43.4660 C 0 0 0 0 0
|
| 7 |
+
77.6700 26.5420 43.0440 C 0 0 0 0 0
|
| 8 |
+
77.9500 24.8220 41.1760 C 0 0 0 0 0
|
| 9 |
+
77.3830 26.2010 39.4900 C 0 0 0 0 0
|
| 10 |
+
75.2300 27.3370 43.3670 N 0 3 0 0 0
|
| 11 |
+
77.9110 26.1050 41.6570 N 0 0 0 0 0
|
| 12 |
+
77.6320 24.9180 39.8630 N 0 0 0 0 0
|
| 13 |
+
75.5970 26.5530 45.7490 O 0 0 0 0 0
|
| 14 |
+
77.1170 25.0430 45.3260 O 0 0 0 0 0
|
| 15 |
+
78.2130 23.8670 41.8330 O 0 0 0 0 0
|
| 16 |
+
77.0700 26.6560 38.4150 O 0 0 0 0 0
|
| 17 |
+
77.5450 26.9980 40.5930 O 0 0 0 0 0
|
| 18 |
+
75.8820 25.4351 42.7987 H 0 0 0 0 0
|
| 19 |
+
78.3570 26.0144 43.7056 H 0 0 0 0 0
|
| 20 |
+
77.8281 27.6186 43.1083 H 0 0 0 0 0
|
| 21 |
+
74.3171 27.0011 43.6738 H 0 0 0 0 0
|
| 22 |
+
75.5258 28.1116 43.9610 H 0 0 0 0 0
|
| 23 |
+
75.1696 27.6530 42.3991 H 0 0 0 0 0
|
| 24 |
+
77.5849 24.1208 39.2284 H 0 0 0 0 0
|
| 25 |
+
77.5708 24.6909 44.5568 H 0 0 0 0 0
|
| 26 |
+
2 1 1 0 0 0
|
| 27 |
+
1 9 2 0 0 0
|
| 28 |
+
1 10 1 0 0 0
|
| 29 |
+
3 2 1 0 0 0
|
| 30 |
+
2 6 1 0 0 0
|
| 31 |
+
7 3 1 0 0 0
|
| 32 |
+
13 7 1 0 0 0
|
| 33 |
+
5 13 1 0 0 0
|
| 34 |
+
5 12 2 0 0 0
|
| 35 |
+
4 11 2 0 0 0
|
| 36 |
+
8 5 1 0 0 0
|
| 37 |
+
8 4 1 0 0 0
|
| 38 |
+
7 4 1 0 0 0
|
| 39 |
+
2 14 1 0 0 0
|
| 40 |
+
3 15 1 0 0 0
|
| 41 |
+
3 16 1 0 0 0
|
| 42 |
+
6 17 1 0 0 0
|
| 43 |
+
6 18 1 0 0 0
|
| 44 |
+
6 19 1 0 0 0
|
| 45 |
+
8 20 1 0 0 0
|
| 46 |
+
10 21 1 0 0 0
|
| 47 |
+
M END
|
| 48 |
+
$$$$
|
1mm7/1mm7_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1mm7/1mm7_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1tok/1tok_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1tok/1tok_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1u9e/1u9e_ligand.mol2
ADDED
|
@@ -0,0 +1,72 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1u9e_ligand
|
| 7 |
+
27 29 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 32.1100 36.9260 35.3650 C.ar 1 397 -0.0433
|
| 14 |
+
2 C2 30.7430 37.0510 35.7400 C.ar 1 397 -0.0372
|
| 15 |
+
3 C3 30.3120 36.6340 37.0060 C.ar 1 397 0.1132
|
| 16 |
+
4 C4 31.2720 36.0610 37.9350 C.ar 1 397 -0.0205
|
| 17 |
+
5 C5 32.6150 35.9410 37.5620 C.ar 1 397 -0.0453
|
| 18 |
+
6 C6 33.0410 36.3680 36.2770 C.ar 1 397 0.0715
|
| 19 |
+
7 O10 29.0750 36.6560 37.5800 O.3 1 397 -0.2598
|
| 20 |
+
8 C11 29.2140 36.1310 38.8260 C.2 1 397 0.1154
|
| 21 |
+
9 C12 30.5640 35.7210 39.1540 C.2 1 397 -0.0450
|
| 22 |
+
10 C13 28.0660 36.0510 39.6530 C.ar 1 397 0.0061
|
| 23 |
+
11 C14 26.7520 36.4000 39.1600 C.ar 1 397 -0.0582
|
| 24 |
+
12 C15 25.5980 36.3370 39.9750 C.ar 1 397 -0.0309
|
| 25 |
+
13 C16 25.7070 35.9250 41.3200 C.ar 1 397 0.0900
|
| 26 |
+
14 C17 26.9710 35.5720 41.8530 C.ar 1 397 -0.0309
|
| 27 |
+
15 C18 28.1220 35.6360 41.0390 C.ar 1 397 -0.0582
|
| 28 |
+
16 O23 34.3640 36.2420 35.9250 O.3 1 397 -0.3409
|
| 29 |
+
17 O24 24.5770 35.8710 42.0960 O.3 1 397 -0.3315
|
| 30 |
+
18 H1 32.4381 37.2561 34.3860 H 1 397 0.0489
|
| 31 |
+
19 H2 30.0298 37.4721 35.0407 H 1 397 0.0540
|
| 32 |
+
20 H3 33.3329 35.5204 38.2568 H 1 397 0.0439
|
| 33 |
+
21 H4 30.9456 35.2759 40.0717 H 1 397 0.0339
|
| 34 |
+
22 H5 26.6480 36.7211 38.1299 H 1 397 0.0603
|
| 35 |
+
23 H6 24.6303 36.6051 39.5666 H 1 397 0.0550
|
| 36 |
+
24 H7 27.0541 35.2529 42.8856 H 1 397 0.0550
|
| 37 |
+
25 H8 29.0808 35.3652 41.4660 H 1 397 0.0603
|
| 38 |
+
26 H9 34.4881 36.5694 35.0419 H 1 397 0.2447
|
| 39 |
+
27 H10 24.4485 34.9819 42.4048 H 1 397 0.2493
|
| 40 |
+
@<TRIPOS>BOND
|
| 41 |
+
1 1 2 ar
|
| 42 |
+
2 1 6 ar
|
| 43 |
+
3 2 3 ar
|
| 44 |
+
4 3 4 ar
|
| 45 |
+
5 3 7 1
|
| 46 |
+
6 4 5 ar
|
| 47 |
+
7 4 9 1
|
| 48 |
+
8 5 6 ar
|
| 49 |
+
9 6 16 1
|
| 50 |
+
10 7 8 1
|
| 51 |
+
11 8 9 2
|
| 52 |
+
12 8 10 1
|
| 53 |
+
13 10 11 ar
|
| 54 |
+
14 10 15 ar
|
| 55 |
+
15 11 12 ar
|
| 56 |
+
16 12 13 ar
|
| 57 |
+
17 13 14 ar
|
| 58 |
+
18 13 17 1
|
| 59 |
+
19 14 15 ar
|
| 60 |
+
20 1 18 1
|
| 61 |
+
21 2 19 1
|
| 62 |
+
22 5 20 1
|
| 63 |
+
23 9 21 1
|
| 64 |
+
24 11 22 1
|
| 65 |
+
25 12 23 1
|
| 66 |
+
26 14 24 1
|
| 67 |
+
27 15 25 1
|
| 68 |
+
28 16 26 1
|
| 69 |
+
29 17 27 1
|
| 70 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 71 |
+
1 397 1
|
| 72 |
+
|
1u9e/1u9e_ligand.sdf
ADDED
|
@@ -0,0 +1,62 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1u9e_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
27 29 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
32.1100 36.9260 35.3650 C 0 0 0 0 0
|
| 6 |
+
30.7430 37.0510 35.7400 C 0 0 0 0 0
|
| 7 |
+
30.3120 36.6340 37.0060 C 0 0 0 0 0
|
| 8 |
+
31.2720 36.0610 37.9350 C 0 0 0 0 0
|
| 9 |
+
32.6150 35.9410 37.5620 C 0 0 0 0 0
|
| 10 |
+
33.0410 36.3680 36.2770 C 0 0 0 0 0
|
| 11 |
+
29.0750 36.6560 37.5800 O 0 0 0 0 0
|
| 12 |
+
29.2140 36.1310 38.8260 C 0 0 0 0 0
|
| 13 |
+
30.5640 35.7210 39.1540 C 0 0 0 0 0
|
| 14 |
+
28.0660 36.0510 39.6530 C 0 0 0 0 0
|
| 15 |
+
26.7520 36.4000 39.1600 C 0 0 0 0 0
|
| 16 |
+
25.5980 36.3370 39.9750 C 0 0 0 0 0
|
| 17 |
+
25.7070 35.9250 41.3200 C 0 0 0 0 0
|
| 18 |
+
26.9710 35.5720 41.8530 C 0 0 0 0 0
|
| 19 |
+
28.1220 35.6360 41.0390 C 0 0 0 0 0
|
| 20 |
+
34.3640 36.2420 35.9250 O 0 0 0 0 0
|
| 21 |
+
24.5770 35.8710 42.0960 O 0 0 0 0 0
|
| 22 |
+
32.4400 37.2579 34.3806 H 0 0 0 0 0
|
| 23 |
+
30.0258 37.4744 35.0368 H 0 0 0 0 0
|
| 24 |
+
33.3369 35.5181 38.2606 H 0 0 0 0 0
|
| 25 |
+
30.9460 35.2755 40.0725 H 0 0 0 0 0
|
| 26 |
+
26.6474 36.7228 38.1242 H 0 0 0 0 0
|
| 27 |
+
24.6250 36.6066 39.5644 H 0 0 0 0 0
|
| 28 |
+
27.0546 35.2511 42.8913 H 0 0 0 0 0
|
| 29 |
+
29.0862 35.3637 41.4684 H 0 0 0 0 0
|
| 30 |
+
34.8515 35.8487 36.6525 H 0 0 0 0 0
|
| 31 |
+
24.8104 35.5756 42.9791 H 0 0 0 0 0
|
| 32 |
+
1 2 4 0 0 0
|
| 33 |
+
1 6 4 0 0 0
|
| 34 |
+
2 3 4 0 0 0
|
| 35 |
+
3 4 4 0 0 0
|
| 36 |
+
3 7 4 0 0 0
|
| 37 |
+
4 5 4 0 0 0
|
| 38 |
+
4 9 4 0 0 0
|
| 39 |
+
5 6 4 0 0 0
|
| 40 |
+
6 16 1 0 0 0
|
| 41 |
+
7 8 4 0 0 0
|
| 42 |
+
8 9 4 0 0 0
|
| 43 |
+
8 10 1 0 0 0
|
| 44 |
+
10 11 4 0 0 0
|
| 45 |
+
10 15 4 0 0 0
|
| 46 |
+
11 12 4 0 0 0
|
| 47 |
+
12 13 4 0 0 0
|
| 48 |
+
13 14 4 0 0 0
|
| 49 |
+
13 17 1 0 0 0
|
| 50 |
+
14 15 4 0 0 0
|
| 51 |
+
1 18 1 0 0 0
|
| 52 |
+
2 19 1 0 0 0
|
| 53 |
+
5 20 1 0 0 0
|
| 54 |
+
9 21 1 0 0 0
|
| 55 |
+
11 22 1 0 0 0
|
| 56 |
+
12 23 1 0 0 0
|
| 57 |
+
14 24 1 0 0 0
|
| 58 |
+
15 25 1 0 0 0
|
| 59 |
+
16 26 1 0 0 0
|
| 60 |
+
17 27 1 0 0 0
|
| 61 |
+
M END
|
| 62 |
+
$$$$
|
1u9e/1u9e_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1u9e/1u9e_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2baj/2baj_ligand.mol2
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2baj_ligand
|
| 7 |
+
47 49 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O27 13.8160 -0.5000 29.2140 O.2 1 1PP -0.3785
|
| 14 |
+
2 C17 13.2860 -1.2990 29.9740 C.2 1 1PP 0.3237
|
| 15 |
+
3 N18 13.8730 -2.4580 30.2840 N.am 1 1PP -0.2125
|
| 16 |
+
4 C19 15.0720 -2.8530 29.7870 C.ar 1 1PP 0.0818
|
| 17 |
+
5 C20 15.2190 -4.1800 29.4920 C.ar 1 1PP 0.0729
|
| 18 |
+
6 CL25 13.8770 -5.3050 29.7430 Cl 1 1PP -0.0825
|
| 19 |
+
7 C21 16.4860 -4.7090 28.9280 C.ar 1 1PP 0.0408
|
| 20 |
+
8 CL26 16.5830 -6.4680 28.6080 Cl 1 1PP -0.0742
|
| 21 |
+
9 C22 17.5510 -3.8320 28.7160 C.ar 1 1PP -0.0629
|
| 22 |
+
10 C23 17.3600 -2.4730 29.0370 C.ar 1 1PP -0.0749
|
| 23 |
+
11 C24 16.1470 -1.9880 29.5490 C.ar 1 1PP -0.0407
|
| 24 |
+
12 N16 12.1000 -1.0550 30.5370 N.am 1 1PP -0.1792
|
| 25 |
+
13 C11 11.3770 0.0560 30.3120 C.2 1 1PP 0.2198
|
| 26 |
+
14 C10 11.1570 0.7740 29.1300 C.2 1 1PP -0.0187
|
| 27 |
+
15 C9 10.2720 1.7720 29.5650 C.2 1 1PP -0.0024
|
| 28 |
+
16 C12 9.6910 2.8450 28.6660 C.3 1 1PP -0.0451
|
| 29 |
+
17 C15 8.6200 2.1560 27.8200 C.3 1 1PP -0.0851
|
| 30 |
+
18 C14 10.8080 3.4610 27.8240 C.3 1 1PP -0.0851
|
| 31 |
+
19 C13 9.0550 3.9330 29.5310 C.3 1 1PP -0.0851
|
| 32 |
+
20 N8 9.9100 1.7040 30.8550 N.2 1 1PP -0.1653
|
| 33 |
+
21 N7 10.6260 0.5800 31.3080 N.pl3 1 1PP -0.1031
|
| 34 |
+
22 C5 10.5510 0.2340 32.6440 C.ar 1 1PP 0.1285
|
| 35 |
+
23 C6 11.6520 -0.1180 33.4260 C.ar 1 1PP -0.0207
|
| 36 |
+
24 C4 9.3470 0.2210 33.3770 C.ar 1 1PP -0.0207
|
| 37 |
+
25 C3 9.2290 -0.1010 34.7700 C.ar 1 1PP -0.0631
|
| 38 |
+
26 C2 10.3760 -0.4190 35.5210 C.ar 1 1PP -0.0662
|
| 39 |
+
27 C1 11.6060 -0.3870 34.8280 C.ar 1 1PP -0.0631
|
| 40 |
+
28 H1 13.4015 -3.0699 30.9191 H 1 1PP 0.2268
|
| 41 |
+
29 H2 18.4951 -4.1850 28.3171 H 1 1PP 0.0493
|
| 42 |
+
30 H3 18.1782 -1.7787 28.8831 H 1 1PP 0.0579
|
| 43 |
+
31 H4 16.0408 -0.9306 29.7629 H 1 1PP 0.0503
|
| 44 |
+
32 H5 11.7273 -1.7396 31.1635 H 1 1PP 0.2345
|
| 45 |
+
33 H6 11.5653 0.6028 28.1351 H 1 1PP 0.0222
|
| 46 |
+
34 H7 8.1593 2.8902 27.1427 H 1 1PP 0.0133
|
| 47 |
+
35 H8 7.8489 1.7313 28.4795 H 1 1PP 0.0133
|
| 48 |
+
36 H9 9.0812 1.3509 27.2291 H 1 1PP 0.0133
|
| 49 |
+
37 H10 11.5447 3.9397 28.4859 H 1 1PP 0.0133
|
| 50 |
+
38 H11 10.3822 4.2137 27.1442 H 1 1PP 0.0133
|
| 51 |
+
39 H12 11.3011 2.6729 27.2359 H 1 1PP 0.0133
|
| 52 |
+
40 H13 8.2502 3.4942 30.1390 H 1 1PP 0.0133
|
| 53 |
+
41 H14 8.6387 4.7192 28.8840 H 1 1PP 0.0133
|
| 54 |
+
42 H15 9.8184 4.3685 30.1925 H 1 1PP 0.0133
|
| 55 |
+
43 H16 12.6142 -0.1929 32.9324 H 1 1PP 0.0608
|
| 56 |
+
44 H17 8.4371 0.4747 32.8453 H 1 1PP 0.0608
|
| 57 |
+
45 H18 8.2546 -0.0994 35.2450 H 1 1PP 0.0607
|
| 58 |
+
46 H19 10.3185 -0.6743 36.5729 H 1 1PP 0.0578
|
| 59 |
+
47 H20 12.5283 -0.5692 35.3677 H 1 1PP 0.0607
|
| 60 |
+
@<TRIPOS>BOND
|
| 61 |
+
1 1 2 2
|
| 62 |
+
2 2 3 am
|
| 63 |
+
3 2 12 am
|
| 64 |
+
4 3 4 1
|
| 65 |
+
5 4 5 ar
|
| 66 |
+
6 4 11 ar
|
| 67 |
+
7 5 6 1
|
| 68 |
+
8 5 7 ar
|
| 69 |
+
9 7 8 1
|
| 70 |
+
10 7 9 ar
|
| 71 |
+
11 9 10 ar
|
| 72 |
+
12 10 11 ar
|
| 73 |
+
13 12 13 1
|
| 74 |
+
14 13 14 2
|
| 75 |
+
15 13 21 1
|
| 76 |
+
16 14 15 1
|
| 77 |
+
17 15 16 1
|
| 78 |
+
18 15 20 2
|
| 79 |
+
19 16 17 1
|
| 80 |
+
20 16 18 1
|
| 81 |
+
21 16 19 1
|
| 82 |
+
22 20 21 1
|
| 83 |
+
23 21 22 1
|
| 84 |
+
24 22 23 ar
|
| 85 |
+
25 22 24 ar
|
| 86 |
+
26 23 27 ar
|
| 87 |
+
27 24 25 ar
|
| 88 |
+
28 25 26 ar
|
| 89 |
+
29 26 27 ar
|
| 90 |
+
30 3 28 1
|
| 91 |
+
31 9 29 1
|
| 92 |
+
32 10 30 1
|
| 93 |
+
33 11 31 1
|
| 94 |
+
34 12 32 1
|
| 95 |
+
35 14 33 1
|
| 96 |
+
36 17 34 1
|
| 97 |
+
37 17 35 1
|
| 98 |
+
38 17 36 1
|
| 99 |
+
39 18 37 1
|
| 100 |
+
40 18 38 1
|
| 101 |
+
41 18 39 1
|
| 102 |
+
42 19 40 1
|
| 103 |
+
43 19 41 1
|
| 104 |
+
44 19 42 1
|
| 105 |
+
45 23 43 1
|
| 106 |
+
46 24 44 1
|
| 107 |
+
47 25 45 1
|
| 108 |
+
48 26 46 1
|
| 109 |
+
49 27 47 1
|
| 110 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 111 |
+
1 1PP 1
|
| 112 |
+
|
2baj/2baj_ligand.sdf
ADDED
|
@@ -0,0 +1,102 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2baj_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
47 49 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
13.8160 -0.5000 29.2140 O 0 0 0 0 0
|
| 6 |
+
13.2860 -1.2990 29.9740 C 0 0 0 0 0
|
| 7 |
+
13.8730 -2.4580 30.2840 N 0 0 0 0 0
|
| 8 |
+
15.0720 -2.8530 29.7870 C 0 0 0 0 0
|
| 9 |
+
15.2190 -4.1800 29.4920 C 0 0 0 0 0
|
| 10 |
+
13.8770 -5.3050 29.7430 Cl 0 0 0 0 0
|
| 11 |
+
16.4860 -4.7090 28.9280 C 0 0 0 0 0
|
| 12 |
+
16.5830 -6.4680 28.6080 Cl 0 0 0 0 0
|
| 13 |
+
17.5510 -3.8320 28.7160 C 0 0 0 0 0
|
| 14 |
+
17.3600 -2.4730 29.0370 C 0 0 0 0 0
|
| 15 |
+
16.1470 -1.9880 29.5490 C 0 0 0 0 0
|
| 16 |
+
12.1000 -1.0550 30.5370 N 0 0 0 0 0
|
| 17 |
+
11.3770 0.0560 30.3120 C 0 0 0 0 0
|
| 18 |
+
11.1570 0.7740 29.1300 C 0 0 0 0 0
|
| 19 |
+
10.2720 1.7720 29.5650 C 0 0 0 0 0
|
| 20 |
+
9.6910 2.8450 28.6660 C 0 0 0 0 0
|
| 21 |
+
8.6200 2.1560 27.8200 C 0 0 0 0 0
|
| 22 |
+
10.8080 3.4610 27.8240 C 0 0 0 0 0
|
| 23 |
+
9.0550 3.9330 29.5310 C 0 0 0 0 0
|
| 24 |
+
9.9100 1.7040 30.8550 N 0 0 0 0 0
|
| 25 |
+
10.6260 0.5800 31.3080 N 0 0 0 0 0
|
| 26 |
+
10.5510 0.2340 32.6440 C 0 0 0 0 0
|
| 27 |
+
11.6520 -0.1180 33.4260 C 0 0 0 0 0
|
| 28 |
+
9.3470 0.2210 33.3770 C 0 0 0 0 0
|
| 29 |
+
9.2290 -0.1010 34.7700 C 0 0 0 0 0
|
| 30 |
+
10.3760 -0.4190 35.5210 C 0 0 0 0 0
|
| 31 |
+
11.6060 -0.3870 34.8280 C 0 0 0 0 0
|
| 32 |
+
13.3921 -3.0821 30.9318 H 0 0 0 0 0
|
| 33 |
+
18.5003 -4.1869 28.3149 H 0 0 0 0 0
|
| 34 |
+
18.1827 -1.7749 28.8822 H 0 0 0 0 0
|
| 35 |
+
16.0402 -0.9248 29.7641 H 0 0 0 0 0
|
| 36 |
+
11.7198 -1.7533 31.1760 H 0 0 0 0 0
|
| 37 |
+
11.5657 0.6026 28.1342 H 0 0 0 0 0
|
| 38 |
+
9.0782 1.3585 27.2351 H 0 0 0 0 0
|
| 39 |
+
7.8566 1.7355 28.4746 H 0 0 0 0 0
|
| 40 |
+
8.1643 2.8844 27.1493 H 0 0 0 0 0
|
| 41 |
+
11.5562 3.9025 28.4823 H 0 0 0 0 0
|
| 42 |
+
11.2712 2.6855 27.2140 H 0 0 0 0 0
|
| 43 |
+
10.3904 4.2327 27.1774 H 0 0 0 0 0
|
| 44 |
+
8.2633 3.4954 30.1391 H 0 0 0 0 0
|
| 45 |
+
9.8142 4.3695 30.1800 H 0 0 0 0 0
|
| 46 |
+
8.6356 4.7073 28.8886 H 0 0 0 0 0
|
| 47 |
+
12.6195 -0.1933 32.9297 H 0 0 0 0 0
|
| 48 |
+
8.4320 0.4761 32.8424 H 0 0 0 0 0
|
| 49 |
+
8.2492 -0.0994 35.2476 H 0 0 0 0 0
|
| 50 |
+
10.3181 -0.6757 36.5788 H 0 0 0 0 0
|
| 51 |
+
12.5334 -0.5702 35.3707 H 0 0 0 0 0
|
| 52 |
+
1 2 2 0 0 0
|
| 53 |
+
2 3 1 0 0 0
|
| 54 |
+
2 12 1 0 0 0
|
| 55 |
+
3 4 1 0 0 0
|
| 56 |
+
4 5 4 0 0 0
|
| 57 |
+
4 11 4 0 0 0
|
| 58 |
+
5 6 1 0 0 0
|
| 59 |
+
5 7 4 0 0 0
|
| 60 |
+
7 8 1 0 0 0
|
| 61 |
+
7 9 4 0 0 0
|
| 62 |
+
9 10 4 0 0 0
|
| 63 |
+
10 11 4 0 0 0
|
| 64 |
+
12 13 1 0 0 0
|
| 65 |
+
13 14 4 0 0 0
|
| 66 |
+
13 21 4 0 0 0
|
| 67 |
+
14 15 4 0 0 0
|
| 68 |
+
15 16 1 0 0 0
|
| 69 |
+
15 20 4 0 0 0
|
| 70 |
+
16 17 1 0 0 0
|
| 71 |
+
16 18 1 0 0 0
|
| 72 |
+
16 19 1 0 0 0
|
| 73 |
+
20 21 4 0 0 0
|
| 74 |
+
21 22 1 0 0 0
|
| 75 |
+
22 23 4 0 0 0
|
| 76 |
+
22 24 4 0 0 0
|
| 77 |
+
23 27 4 0 0 0
|
| 78 |
+
24 25 4 0 0 0
|
| 79 |
+
25 26 4 0 0 0
|
| 80 |
+
26 27 4 0 0 0
|
| 81 |
+
3 28 1 0 0 0
|
| 82 |
+
9 29 1 0 0 0
|
| 83 |
+
10 30 1 0 0 0
|
| 84 |
+
11 31 1 0 0 0
|
| 85 |
+
12 32 1 0 0 0
|
| 86 |
+
14 33 1 0 0 0
|
| 87 |
+
17 34 1 0 0 0
|
| 88 |
+
17 35 1 0 0 0
|
| 89 |
+
17 36 1 0 0 0
|
| 90 |
+
18 37 1 0 0 0
|
| 91 |
+
18 38 1 0 0 0
|
| 92 |
+
18 39 1 0 0 0
|
| 93 |
+
19 40 1 0 0 0
|
| 94 |
+
19 41 1 0 0 0
|
| 95 |
+
19 42 1 0 0 0
|
| 96 |
+
23 43 1 0 0 0
|
| 97 |
+
24 44 1 0 0 0
|
| 98 |
+
25 45 1 0 0 0
|
| 99 |
+
26 46 1 0 0 0
|
| 100 |
+
27 47 1 0 0 0
|
| 101 |
+
M END
|
| 102 |
+
$$$$
|
2baj/2baj_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2baj/2baj_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2f80/2f80_ligand.mol2
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:53 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2f80_ligand
|
| 7 |
+
75 78 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 21.1430 28.7980 14.0100 N.pl3 1 017 -0.3369
|
| 14 |
+
2 C2 20.5620 27.6460 14.4460 C.ar 1 017 0.0353
|
| 15 |
+
3 C3 19.2200 27.4510 14.1280 C.ar 1 017 -0.0429
|
| 16 |
+
4 C4 18.5750 26.2900 14.5490 C.ar 1 017 -0.0471
|
| 17 |
+
5 C5 19.3070 25.3530 15.2830 C.ar 1 017 0.0949
|
| 18 |
+
6 C6 20.6580 25.5150 15.6220 C.ar 1 017 -0.0471
|
| 19 |
+
7 C7 21.2920 26.6990 15.1850 C.ar 1 017 -0.0429
|
| 20 |
+
8 S8 18.4080 23.8460 15.8120 S.o2 1 017 0.0648
|
| 21 |
+
9 O9 17.2190 23.5220 14.8850 O.2 1 017 -0.1518
|
| 22 |
+
10 O10 19.4760 22.6930 15.9630 O.2 1 017 -0.1518
|
| 23 |
+
11 N11 17.8200 24.1710 17.4900 N.am 1 017 -0.2327
|
| 24 |
+
12 C12 18.8420 24.5720 18.5060 C.3 1 017 0.0319
|
| 25 |
+
13 C13 18.5320 23.9580 19.8970 C.3 1 017 -0.0296
|
| 26 |
+
14 C14 18.3170 22.4680 19.6970 C.3 1 017 -0.0612
|
| 27 |
+
15 C15 19.7340 24.2060 20.8030 C.3 1 017 -0.0612
|
| 28 |
+
16 C16 16.5610 25.0320 17.5180 C.3 1 017 0.0578
|
| 29 |
+
17 C17 15.4090 24.0820 18.0090 C.3 1 017 0.0967
|
| 30 |
+
18 O18 14.2840 24.8750 18.3430 O.3 1 017 -0.3877
|
| 31 |
+
19 C19 15.0610 22.9430 17.0100 C.3 1 017 0.0807
|
| 32 |
+
20 N20 14.1470 22.0380 17.6660 N.am 1 017 -0.2550
|
| 33 |
+
21 C21 14.4610 20.7880 18.0620 C.2 1 017 0.3203
|
| 34 |
+
22 O22 15.5720 20.2090 17.7850 O.2 1 017 -0.3775
|
| 35 |
+
23 O23 13.4090 20.1960 18.8200 O.3 1 017 -0.2578
|
| 36 |
+
24 C24 13.5140 18.7410 19.0150 C.3 1 017 0.1189
|
| 37 |
+
25 C25 12.8390 18.3920 20.3620 C.3 1 017 0.0815
|
| 38 |
+
26 O26 11.4100 18.6260 20.1590 O.3 1 017 -0.3480
|
| 39 |
+
27 C27 11.1950 18.2080 18.8220 C.3 1 017 0.1648
|
| 40 |
+
28 O28 10.2770 19.0030 18.0950 O.3 1 017 -0.3509
|
| 41 |
+
29 C29 11.1260 19.5880 17.0830 C.3 1 017 0.0512
|
| 42 |
+
30 C30 12.2140 18.5700 16.7260 C.3 1 017 -0.0191
|
| 43 |
+
31 C31 12.4780 18.0440 18.1150 C.3 1 017 0.0449
|
| 44 |
+
32 C32 14.3430 23.3390 15.6960 C.3 1 017 0.0064
|
| 45 |
+
33 C33 12.5470 21.8390 14.6860 C.ar 1 017 -0.0603
|
| 46 |
+
34 C34 12.1480 20.7570 13.8910 C.ar 1 017 -0.0686
|
| 47 |
+
35 C35 13.1250 19.9890 13.2360 C.ar 1 017 -0.0687
|
| 48 |
+
36 C36 14.4820 20.3080 13.3800 C.ar 1 017 -0.0686
|
| 49 |
+
37 C37 14.8810 21.3940 14.1770 C.ar 1 017 -0.0603
|
| 50 |
+
38 C38 13.9040 22.1590 14.8300 C.ar 1 017 -0.0408
|
| 51 |
+
39 H1 20.5920 29.4802 13.4697 H 1 017 0.1719
|
| 52 |
+
40 H2 22.1334 28.9870 14.2205 H 1 017 0.1719
|
| 53 |
+
41 H3 18.6808 28.1978 13.5566 H 1 017 0.0515
|
| 54 |
+
42 H4 17.5311 26.1179 14.3130 H 1 017 0.0602
|
| 55 |
+
43 H5 21.1920 24.7649 16.1940 H 1 017 0.0602
|
| 56 |
+
44 H6 22.3357 26.8764 15.4182 H 1 017 0.0515
|
| 57 |
+
45 H7 18.8488 25.6685 18.5928 H 1 017 0.0480
|
| 58 |
+
46 H8 19.8315 24.2243 18.1743 H 1 017 0.0480
|
| 59 |
+
47 H9 17.6315 24.4164 20.3317 H 1 017 0.0311
|
| 60 |
+
48 H10 18.0939 21.9965 20.6655 H 1 017 0.0233
|
| 61 |
+
49 H11 19.2273 22.0199 19.2721 H 1 017 0.0233
|
| 62 |
+
50 H12 17.4740 22.3083 19.0087 H 1 017 0.0233
|
| 63 |
+
51 H13 19.8750 25.2887 20.9369 H 1 017 0.0233
|
| 64 |
+
52 H14 20.6349 23.7730 20.3438 H 1 017 0.0233
|
| 65 |
+
53 H15 19.5589 23.7353 21.7816 H 1 017 0.0233
|
| 66 |
+
54 H16 16.3376 25.4182 16.5125 H 1 017 0.0504
|
| 67 |
+
55 H17 16.6872 25.8740 18.2145 H 1 017 0.0504
|
| 68 |
+
56 H18 15.7575 23.5939 18.9311 H 1 017 0.0634
|
| 69 |
+
57 H19 14.0008 25.3595 17.5766 H 1 017 0.2100
|
| 70 |
+
58 H20 15.9961 22.4240 16.7527 H 1 017 0.0604
|
| 71 |
+
59 H21 13.2164 22.3607 17.8386 H 1 017 0.1873
|
| 72 |
+
60 H22 14.5448 18.3738 18.9023 H 1 017 0.0675
|
| 73 |
+
61 H23 13.2239 19.0397 21.1634 H 1 017 0.0590
|
| 74 |
+
62 H24 13.0223 17.3390 20.6217 H 1 017 0.0590
|
| 75 |
+
63 H25 10.7411 17.2079 18.8841 H 1 017 0.0913
|
| 76 |
+
64 H26 11.5888 20.5074 17.4708 H 1 017 0.0561
|
| 77 |
+
65 H27 10.5307 19.8260 16.1892 H 1 017 0.0561
|
| 78 |
+
66 H28 13.1021 19.0472 16.2860 H 1 017 0.0293
|
| 79 |
+
67 H29 11.8446 17.7868 16.0477 H 1 017 0.0293
|
| 80 |
+
68 H30 12.7557 16.9829 18.0325 H 1 017 0.0380
|
| 81 |
+
69 H31 15.0297 23.9620 15.1042 H 1 017 0.0449
|
| 82 |
+
70 H32 13.4490 23.9245 15.9566 H 1 017 0.0449
|
| 83 |
+
71 H33 11.7984 22.4351 15.1952 H 1 017 0.0557
|
| 84 |
+
72 H34 11.0970 20.5150 13.7824 H 1 017 0.0599
|
| 85 |
+
73 H35 12.8289 19.1487 12.6185 H 1 017 0.0559
|
| 86 |
+
74 H36 15.2308 19.7113 12.8717 H 1 017 0.0599
|
| 87 |
+
75 H37 15.9316 21.6376 14.2858 H 1 017 0.0557
|
| 88 |
+
@<TRIPOS>BOND
|
| 89 |
+
1 2 1 1
|
| 90 |
+
2 3 2 ar
|
| 91 |
+
3 7 2 ar
|
| 92 |
+
4 4 3 ar
|
| 93 |
+
5 5 4 ar
|
| 94 |
+
6 5 6 ar
|
| 95 |
+
7 8 5 1
|
| 96 |
+
8 6 7 ar
|
| 97 |
+
9 8 9 2
|
| 98 |
+
10 8 10 2
|
| 99 |
+
11 11 8 am
|
| 100 |
+
12 11 12 1
|
| 101 |
+
13 16 11 1
|
| 102 |
+
14 12 13 1
|
| 103 |
+
15 13 14 1
|
| 104 |
+
16 13 15 1
|
| 105 |
+
17 17 16 1
|
| 106 |
+
18 17 18 1
|
| 107 |
+
19 19 17 1
|
| 108 |
+
20 19 20 1
|
| 109 |
+
21 32 19 1
|
| 110 |
+
22 20 21 am
|
| 111 |
+
23 21 22 2
|
| 112 |
+
24 21 23 1
|
| 113 |
+
25 23 24 1
|
| 114 |
+
26 24 25 1
|
| 115 |
+
27 24 31 1
|
| 116 |
+
28 25 26 1
|
| 117 |
+
29 27 26 1
|
| 118 |
+
30 27 28 1
|
| 119 |
+
31 31 27 1
|
| 120 |
+
32 29 28 1
|
| 121 |
+
33 30 29 1
|
| 122 |
+
34 31 30 1
|
| 123 |
+
35 38 32 1
|
| 124 |
+
36 33 34 ar
|
| 125 |
+
37 33 38 ar
|
| 126 |
+
38 34 35 ar
|
| 127 |
+
39 35 36 ar
|
| 128 |
+
40 36 37 ar
|
| 129 |
+
41 37 38 ar
|
| 130 |
+
42 1 39 1
|
| 131 |
+
43 1 40 1
|
| 132 |
+
44 3 41 1
|
| 133 |
+
45 4 42 1
|
| 134 |
+
46 6 43 1
|
| 135 |
+
47 7 44 1
|
| 136 |
+
48 12 45 1
|
| 137 |
+
49 12 46 1
|
| 138 |
+
50 13 47 1
|
| 139 |
+
51 14 48 1
|
| 140 |
+
52 14 49 1
|
| 141 |
+
53 14 50 1
|
| 142 |
+
54 15 51 1
|
| 143 |
+
55 15 52 1
|
| 144 |
+
56 15 53 1
|
| 145 |
+
57 16 54 1
|
| 146 |
+
58 16 55 1
|
| 147 |
+
59 17 56 1
|
| 148 |
+
60 18 57 1
|
| 149 |
+
61 19 58 1
|
| 150 |
+
62 20 59 1
|
| 151 |
+
63 24 60 1
|
| 152 |
+
64 25 61 1
|
| 153 |
+
65 25 62 1
|
| 154 |
+
66 27 63 1
|
| 155 |
+
67 29 64 1
|
| 156 |
+
68 29 65 1
|
| 157 |
+
69 30 66 1
|
| 158 |
+
70 30 67 1
|
| 159 |
+
71 31 68 1
|
| 160 |
+
72 32 69 1
|
| 161 |
+
73 32 70 1
|
| 162 |
+
74 33 71 1
|
| 163 |
+
75 34 72 1
|
| 164 |
+
76 35 73 1
|
| 165 |
+
77 36 74 1
|
| 166 |
+
78 37 75 1
|
| 167 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 168 |
+
1 017 1
|
| 169 |
+
|
2f80/2f80_ligand.sdf
ADDED
|
@@ -0,0 +1,159 @@
|
|
|
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|
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2f80_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
75 78 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
21.1430 28.7980 14.0100 N 0 0 0 0 0
|
| 6 |
+
20.5620 27.6460 14.4460 C 0 0 0 0 0
|
| 7 |
+
19.2200 27.4510 14.1280 C 0 0 0 0 0
|
| 8 |
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18.5750 26.2900 14.5490 C 0 0 0 0 0
|
| 9 |
+
19.3070 25.3530 15.2830 C 0 0 0 0 0
|
| 10 |
+
20.6580 25.5150 15.6220 C 0 0 0 0 0
|
| 11 |
+
21.2920 26.6990 15.1850 C 0 0 0 0 0
|
| 12 |
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18.4080 23.8460 15.8120 S 0 0 0 0 0
|
| 13 |
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17.2190 23.5220 14.8850 O 0 0 0 0 0
|
| 14 |
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19.4760 22.6930 15.9630 O 0 0 0 0 0
|
| 15 |
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17.8200 24.1710 17.4900 N 0 0 0 0 0
|
| 16 |
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18.8420 24.5720 18.5060 C 0 0 0 0 0
|
| 17 |
+
18.5320 23.9580 19.8970 C 0 0 0 0 0
|
| 18 |
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18.3170 22.4680 19.6970 C 0 0 0 0 0
|
| 19 |
+
19.7340 24.2060 20.8030 C 0 0 0 0 0
|
| 20 |
+
16.5610 25.0320 17.5180 C 0 0 0 0 0
|
| 21 |
+
15.4090 24.0820 18.0090 C 0 0 0 0 0
|
| 22 |
+
14.2840 24.8750 18.3430 O 0 0 0 0 0
|
| 23 |
+
15.0610 22.9430 17.0100 C 0 0 0 0 0
|
| 24 |
+
14.1470 22.0380 17.6660 N 0 0 0 0 0
|
| 25 |
+
14.4610 20.7880 18.0620 C 0 0 0 0 0
|
| 26 |
+
15.5720 20.2090 17.7850 O 0 0 0 0 0
|
| 27 |
+
13.4090 20.1960 18.8200 O 0 0 0 0 0
|
| 28 |
+
13.5140 18.7410 19.0150 C 0 0 0 0 0
|
| 29 |
+
12.8390 18.3920 20.3620 C 0 0 0 0 0
|
| 30 |
+
11.4100 18.6260 20.1590 O 0 0 0 0 0
|
| 31 |
+
11.1950 18.2080 18.8220 C 0 0 0 0 0
|
| 32 |
+
10.2770 19.0030 18.0950 O 0 0 0 0 0
|
| 33 |
+
11.1260 19.5880 17.0830 C 0 0 0 0 0
|
| 34 |
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12.2140 18.5700 16.7260 C 0 0 0 0 0
|
| 35 |
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12.4780 18.0440 18.1150 C 0 0 0 0 0
|
| 36 |
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14.3430 23.3390 15.6960 C 0 0 0 0 0
|
| 37 |
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12.5470 21.8390 14.6860 C 0 0 0 0 0
|
| 38 |
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12.1480 20.7570 13.8910 C 0 0 0 0 0
|
| 39 |
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13.1250 19.9890 13.2360 C 0 0 0 0 0
|
| 40 |
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14.4820 20.3080 13.3800 C 0 0 0 0 0
|
| 41 |
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14.8810 21.3940 14.1770 C 0 0 0 0 0
|
| 42 |
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13.9040 22.1590 14.8300 C 0 0 0 0 0
|
| 43 |
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20.5974 29.4736 13.4750 H 0 0 0 0 0
|
| 44 |
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22.1238 28.9852 14.2184 H 0 0 0 0 0
|
| 45 |
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18.6778 28.2020 13.5534 H 0 0 0 0 0
|
| 46 |
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17.5253 26.1169 14.3117 H 0 0 0 0 0
|
| 47 |
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21.1950 24.7607 16.1972 H 0 0 0 0 0
|
| 48 |
+
22.3414 26.8774 15.4195 H 0 0 0 0 0
|
| 49 |
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18.8304 25.6581 18.5975 H 0 0 0 0 0
|
| 50 |
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19.8161 24.2094 18.1777 H 0 0 0 0 0
|
| 51 |
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17.6459 24.4009 20.3517 H 0 0 0 0 0
|
| 52 |
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17.4815 22.3111 19.0148 H 0 0 0 0 0
|
| 53 |
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19.2197 22.0253 19.2759 H 0 0 0 0 0
|
| 54 |
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18.0961 22.0020 20.6573 H 0 0 0 0 0
|
| 55 |
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20.6163 23.7334 20.3714 H 0 0 0 0 0
|
| 56 |
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19.9031 25.2789 20.8946 H 0 0 0 0 0
|
| 57 |
+
19.5385 23.7823 21.7880 H 0 0 0 0 0
|
| 58 |
+
16.3417 25.4486 16.5349 H 0 0 0 0 0
|
| 59 |
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16.6796 25.8893 18.1806 H 0 0 0 0 0
|
| 60 |
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15.7600 23.5510 18.8939 H 0 0 0 0 0
|
| 61 |
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13.5716 24.3067 18.6450 H 0 0 0 0 0
|
| 62 |
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16.0348 22.5395 16.7326 H 0 0 0 0 0
|
| 63 |
+
13.1978 22.3672 17.8421 H 0 0 0 0 0
|
| 64 |
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14.5600 18.4663 18.8788 H 0 0 0 0 0
|
| 65 |
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13.2312 19.0040 21.1742 H 0 0 0 0 0
|
| 66 |
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13.0363 17.3596 20.6505 H 0 0 0 0 0
|
| 67 |
+
10.7076 17.2352 18.8871 H 0 0 0 0 0
|
| 68 |
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11.5792 20.5056 17.4580 H 0 0 0 0 0
|
| 69 |
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10.5393 19.8359 16.1985 H 0 0 0 0 0
|
| 70 |
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13.0821 18.9757 16.2064 H 0 0 0 0 0
|
| 71 |
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11.9292 17.8201 15.9880 H 0 0 0 0 0
|
| 72 |
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12.8854 17.0453 17.9579 H 0 0 0 0 0
|
| 73 |
+
15.0542 23.9184 15.1072 H 0 0 0 0 0
|
| 74 |
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13.4397 23.8800 15.9778 H 0 0 0 0 0
|
| 75 |
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11.7943 22.4384 15.1981 H 0 0 0 0 0
|
| 76 |
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11.0911 20.5136 13.7818 H 0 0 0 0 0
|
| 77 |
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12.8273 19.1440 12.6151 H 0 0 0 0 0
|
| 78 |
+
15.2349 19.7080 12.8689 H 0 0 0 0 0
|
| 79 |
+
15.9375 21.6390 14.2864 H 0 0 0 0 0
|
| 80 |
+
2 1 1 0 0 0
|
| 81 |
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3 2 4 0 0 0
|
| 82 |
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7 2 4 0 0 0
|
| 83 |
+
4 3 4 0 0 0
|
| 84 |
+
5 4 4 0 0 0
|
| 85 |
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5 6 4 0 0 0
|
| 86 |
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8 5 1 0 0 0
|
| 87 |
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6 7 4 0 0 0
|
| 88 |
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8 9 2 0 0 0
|
| 89 |
+
8 10 2 0 0 0
|
| 90 |
+
11 8 1 0 0 0
|
| 91 |
+
11 12 1 0 0 0
|
| 92 |
+
16 11 1 0 0 0
|
| 93 |
+
12 13 1 0 0 0
|
| 94 |
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13 14 1 0 0 0
|
| 95 |
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13 15 1 0 0 0
|
| 96 |
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17 16 1 0 0 0
|
| 97 |
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17 18 1 0 0 0
|
| 98 |
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19 17 1 0 0 0
|
| 99 |
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19 20 1 0 0 0
|
| 100 |
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32 19 1 0 0 0
|
| 101 |
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20 21 1 0 0 0
|
| 102 |
+
21 22 2 0 0 0
|
| 103 |
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21 23 1 0 0 0
|
| 104 |
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23 24 1 0 0 0
|
| 105 |
+
24 25 1 0 0 0
|
| 106 |
+
24 31 1 0 0 0
|
| 107 |
+
25 26 1 0 0 0
|
| 108 |
+
27 26 1 0 0 0
|
| 109 |
+
27 28 1 0 0 0
|
| 110 |
+
31 27 1 0 0 0
|
| 111 |
+
29 28 1 0 0 0
|
| 112 |
+
30 29 1 0 0 0
|
| 113 |
+
31 30 1 0 0 0
|
| 114 |
+
38 32 1 0 0 0
|
| 115 |
+
33 34 4 0 0 0
|
| 116 |
+
33 38 4 0 0 0
|
| 117 |
+
34 35 4 0 0 0
|
| 118 |
+
35 36 4 0 0 0
|
| 119 |
+
36 37 4 0 0 0
|
| 120 |
+
37 38 4 0 0 0
|
| 121 |
+
1 39 1 0 0 0
|
| 122 |
+
1 40 1 0 0 0
|
| 123 |
+
3 41 1 0 0 0
|
| 124 |
+
4 42 1 0 0 0
|
| 125 |
+
6 43 1 0 0 0
|
| 126 |
+
7 44 1 0 0 0
|
| 127 |
+
12 45 1 0 0 0
|
| 128 |
+
12 46 1 0 0 0
|
| 129 |
+
13 47 1 0 0 0
|
| 130 |
+
14 48 1 0 0 0
|
| 131 |
+
14 49 1 0 0 0
|
| 132 |
+
14 50 1 0 0 0
|
| 133 |
+
15 51 1 0 0 0
|
| 134 |
+
15 52 1 0 0 0
|
| 135 |
+
15 53 1 0 0 0
|
| 136 |
+
16 54 1 0 0 0
|
| 137 |
+
16 55 1 0 0 0
|
| 138 |
+
17 56 1 0 0 0
|
| 139 |
+
18 57 1 0 0 0
|
| 140 |
+
19 58 1 0 0 0
|
| 141 |
+
20 59 1 0 0 0
|
| 142 |
+
24 60 1 0 0 0
|
| 143 |
+
25 61 1 0 0 0
|
| 144 |
+
25 62 1 0 0 0
|
| 145 |
+
27 63 1 0 0 0
|
| 146 |
+
29 64 1 0 0 0
|
| 147 |
+
29 65 1 0 0 0
|
| 148 |
+
30 66 1 0 0 0
|
| 149 |
+
30 67 1 0 0 0
|
| 150 |
+
31 68 1 0 0 0
|
| 151 |
+
32 69 1 0 0 0
|
| 152 |
+
32 70 1 0 0 0
|
| 153 |
+
33 71 1 0 0 0
|
| 154 |
+
34 72 1 0 0 0
|
| 155 |
+
35 73 1 0 0 0
|
| 156 |
+
36 74 1 0 0 0
|
| 157 |
+
37 75 1 0 0 0
|
| 158 |
+
M END
|
| 159 |
+
$$$$
|
2f80/2f80_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2f80/2f80_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2iit/2iit_ligand.mol2
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:54 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2iit_ligand
|
| 7 |
+
48 49 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 34.5060 50.2940 36.6290 C.ar 1 872 -0.0030
|
| 14 |
+
2 C2 35.8380 50.8090 36.6640 C.ar 1 872 0.1274
|
| 15 |
+
3 C3 37.0040 49.9930 36.3950 C.ar 1 872 -0.0094
|
| 16 |
+
4 C4 36.8100 48.6200 36.0840 C.ar 1 872 -0.0298
|
| 17 |
+
5 C5 35.4910 48.0950 36.0480 C.ar 1 872 0.1544
|
| 18 |
+
6 C6 34.3490 48.9130 36.3110 C.ar 1 872 0.1560
|
| 19 |
+
7 F9 35.3270 46.8250 35.7560 F 1 872 -0.1895
|
| 20 |
+
8 F10 36.0070 52.0830 36.9620 F 1 872 -0.1934
|
| 21 |
+
9 C11 38.3900 50.5640 36.4280 C.3 1 872 0.0243
|
| 22 |
+
10 C12 39.0600 50.8350 34.9990 C.3 1 872 0.0010
|
| 23 |
+
11 C15 40.3430 51.6390 35.2880 C.3 1 872 0.0820
|
| 24 |
+
12 C16 41.5090 50.8440 36.0310 C.2 1 872 0.1863
|
| 25 |
+
13 N19 42.6970 51.5460 36.3720 N.am 1 872 -0.2512
|
| 26 |
+
14 N20 38.2160 51.5680 34.3990 N.4 1 872 0.2238
|
| 27 |
+
15 O22 41.3470 49.6470 36.3160 O.2 1 872 -0.3965
|
| 28 |
+
16 C25 43.2020 52.6530 35.4770 C.3 1 872 0.0385
|
| 29 |
+
17 C26 44.1280 52.1160 34.3920 C.3 1 872 -0.0121
|
| 30 |
+
18 C27 45.3350 51.3840 34.9880 C.3 1 872 0.0328
|
| 31 |
+
19 N28 45.0380 50.6120 36.1920 N.am 1 872 -0.2850
|
| 32 |
+
20 C29 44.8420 50.5180 37.4650 C.2 1 872 0.2022
|
| 33 |
+
21 C30 43.3710 51.0860 37.6760 C.3 1 872 0.1417
|
| 34 |
+
22 C37 42.9910 51.0400 39.2170 C.3 1 872 0.0833
|
| 35 |
+
23 O39 45.5080 50.1230 38.3960 O.2 1 872 -0.3945
|
| 36 |
+
24 F41 33.1400 48.3780 36.2630 F 1 872 -0.1911
|
| 37 |
+
25 C42 41.7010 50.3040 39.6050 C.3 1 872 0.3943
|
| 38 |
+
26 F45 41.5430 50.3580 40.9130 F 1 872 -0.1705
|
| 39 |
+
27 F46 41.7610 49.0300 39.2640 F 1 872 -0.1705
|
| 40 |
+
28 F47 40.6390 50.8310 39.0300 F 1 872 -0.1705
|
| 41 |
+
29 H1 33.6504 50.9267 36.8356 H 1 872 0.0562
|
| 42 |
+
30 H2 37.6600 47.9801 35.8764 H 1 872 0.0522
|
| 43 |
+
31 H3 39.0335 49.8596 36.9755 H 1 872 0.0467
|
| 44 |
+
32 H4 38.3493 51.5205 36.9697 H 1 872 0.0467
|
| 45 |
+
33 H5 39.2745 49.9106 34.4427 H 1 872 0.0898
|
| 46 |
+
34 H6 40.0678 52.4990 35.9162 H 1 872 0.0560
|
| 47 |
+
35 H7 40.7393 51.9987 34.3270 H 1 872 0.0560
|
| 48 |
+
36 H8 37.3804 51.0356 34.2136 H 1 872 0.2000
|
| 49 |
+
37 H9 38.6093 51.8899 33.5285 H 1 872 0.2000
|
| 50 |
+
38 H10 37.9877 52.3608 34.9781 H 1 872 0.2000
|
| 51 |
+
39 H11 43.7531 53.3832 36.0879 H 1 872 0.0525
|
| 52 |
+
40 H12 42.3426 53.1476 35.0007 H 1 872 0.0525
|
| 53 |
+
41 H13 44.4874 52.9575 33.7815 H 1 872 0.0304
|
| 54 |
+
42 H14 43.5649 51.4164 33.7569 H 1 872 0.0304
|
| 55 |
+
43 H15 46.1014 52.1320 35.2393 H 1 872 0.0520
|
| 56 |
+
44 H16 45.7302 50.6955 34.2266 H 1 872 0.0520
|
| 57 |
+
45 H17 44.9320 49.6748 35.8598 H 1 872 0.1851
|
| 58 |
+
46 H18 42.8894 50.1058 37.5447 H 1 872 0.0805
|
| 59 |
+
47 H19 42.8950 52.0793 39.5643 H 1 872 0.0400
|
| 60 |
+
48 H20 43.8217 50.5514 39.7472 H 1 872 0.0400
|
| 61 |
+
@<TRIPOS>BOND
|
| 62 |
+
1 1 2 ar
|
| 63 |
+
2 1 6 ar
|
| 64 |
+
3 2 3 ar
|
| 65 |
+
4 2 8 1
|
| 66 |
+
5 3 4 ar
|
| 67 |
+
6 3 9 1
|
| 68 |
+
7 4 5 ar
|
| 69 |
+
8 5 6 ar
|
| 70 |
+
9 5 7 1
|
| 71 |
+
10 6 24 1
|
| 72 |
+
11 9 10 1
|
| 73 |
+
12 10 11 1
|
| 74 |
+
13 10 14 1
|
| 75 |
+
14 11 12 1
|
| 76 |
+
15 12 13 am
|
| 77 |
+
16 12 15 2
|
| 78 |
+
17 13 16 1
|
| 79 |
+
18 13 21 1
|
| 80 |
+
19 16 17 1
|
| 81 |
+
20 17 18 1
|
| 82 |
+
21 18 19 1
|
| 83 |
+
22 19 20 am
|
| 84 |
+
23 20 21 1
|
| 85 |
+
24 20 23 2
|
| 86 |
+
25 21 22 1
|
| 87 |
+
26 22 25 1
|
| 88 |
+
27 25 26 1
|
| 89 |
+
28 25 27 1
|
| 90 |
+
29 25 28 1
|
| 91 |
+
30 1 29 1
|
| 92 |
+
31 4 30 1
|
| 93 |
+
32 9 31 1
|
| 94 |
+
33 9 32 1
|
| 95 |
+
34 10 33 1
|
| 96 |
+
35 11 34 1
|
| 97 |
+
36 11 35 1
|
| 98 |
+
37 14 36 1
|
| 99 |
+
38 14 37 1
|
| 100 |
+
39 14 38 1
|
| 101 |
+
40 16 39 1
|
| 102 |
+
41 16 40 1
|
| 103 |
+
42 17 41 1
|
| 104 |
+
43 17 42 1
|
| 105 |
+
44 18 43 1
|
| 106 |
+
45 18 44 1
|
| 107 |
+
46 19 45 1
|
| 108 |
+
47 21 46 1
|
| 109 |
+
48 22 47 1
|
| 110 |
+
49 22 48 1
|
| 111 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 112 |
+
1 872 1
|
| 113 |
+
|
2iit/2iit_ligand.sdf
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2iit_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
48 49 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
34.5060 50.2940 36.6290 C 0 0 0 0 0
|
| 6 |
+
35.8380 50.8090 36.6640 C 0 0 0 0 0
|
| 7 |
+
37.0040 49.9930 36.3950 C 0 0 0 0 0
|
| 8 |
+
36.8100 48.6200 36.0840 C 0 0 0 0 0
|
| 9 |
+
35.4910 48.0950 36.0480 C 0 0 0 0 0
|
| 10 |
+
34.3490 48.9130 36.3110 C 0 0 0 0 0
|
| 11 |
+
35.3270 46.8250 35.7560 F 0 0 0 0 0
|
| 12 |
+
36.0070 52.0830 36.9620 F 0 0 0 0 0
|
| 13 |
+
38.3900 50.5640 36.4280 C 0 0 0 0 0
|
| 14 |
+
39.0600 50.8350 34.9990 C 0 0 0 0 0
|
| 15 |
+
40.3430 51.6390 35.2880 C 0 0 0 0 0
|
| 16 |
+
41.5090 50.8440 36.0310 C 0 0 0 0 0
|
| 17 |
+
42.6970 51.5460 36.3720 N 0 0 0 0 0
|
| 18 |
+
38.2160 51.5680 34.3990 N 0 3 0 0 0
|
| 19 |
+
41.3470 49.6470 36.3160 O 0 0 0 0 0
|
| 20 |
+
43.2020 52.6530 35.4770 C 0 0 0 0 0
|
| 21 |
+
44.1280 52.1160 34.3920 C 0 0 0 0 0
|
| 22 |
+
45.3350 51.3840 34.9880 C 0 0 0 0 0
|
| 23 |
+
45.0380 50.6120 36.1920 N 0 0 0 0 0
|
| 24 |
+
44.8420 50.5180 37.4650 C 0 0 0 0 0
|
| 25 |
+
43.3710 51.0860 37.6760 C 0 0 0 0 0
|
| 26 |
+
42.9910 51.0400 39.2170 C 0 0 0 0 0
|
| 27 |
+
45.5080 50.1230 38.3960 O 0 0 0 0 0
|
| 28 |
+
33.1400 48.3780 36.2630 F 0 0 0 0 0
|
| 29 |
+
41.7010 50.3040 39.6050 C 0 0 0 0 0
|
| 30 |
+
41.5430 50.3580 40.9130 F 0 0 0 0 0
|
| 31 |
+
41.7610 49.0300 39.2640 F 0 0 0 0 0
|
| 32 |
+
40.6390 50.8310 39.0300 F 0 0 0 0 0
|
| 33 |
+
33.6456 50.9302 36.8367 H 0 0 0 0 0
|
| 34 |
+
37.6647 47.9766 35.8753 H 0 0 0 0 0
|
| 35 |
+
39.0170 49.8266 36.9293 H 0 0 0 0 0
|
| 36 |
+
38.3146 51.5320 36.9234 H 0 0 0 0 0
|
| 37 |
+
39.3005 49.9447 34.4180 H 0 0 0 0 0
|
| 38 |
+
40.0529 52.4522 35.9533 H 0 0 0 0 0
|
| 39 |
+
40.7434 51.9377 34.3192 H 0 0 0 0 0
|
| 40 |
+
38.5647 51.7932 33.4673 H 0 0 0 0 0
|
| 41 |
+
37.3296 51.0694 34.3203 H 0 0 0 0 0
|
| 42 |
+
38.0775 52.4286 34.9287 H 0 0 0 0 0
|
| 43 |
+
43.7606 53.3626 36.0874 H 0 0 0 0 0
|
| 44 |
+
42.3456 53.1263 34.9967 H 0 0 0 0 0
|
| 45 |
+
44.4931 52.9583 33.8044 H 0 0 0 0 0
|
| 46 |
+
43.5665 51.4104 33.7797 H 0 0 0 0 0
|
| 47 |
+
46.0644 52.1443 35.2672 H 0 0 0 0 0
|
| 48 |
+
45.6858 50.6790 34.2343 H 0 0 0 0 0
|
| 49 |
+
44.9299 49.6560 35.8532 H 0 0 0 0 0
|
| 50 |
+
42.3435 51.4475 37.7168 H 0 0 0 0 0
|
| 51 |
+
42.8381 52.0777 39.5133 H 0 0 0 0 0
|
| 52 |
+
43.7991 50.4933 39.7030 H 0 0 0 0 0
|
| 53 |
+
1 2 4 0 0 0
|
| 54 |
+
1 6 4 0 0 0
|
| 55 |
+
2 3 4 0 0 0
|
| 56 |
+
2 8 1 0 0 0
|
| 57 |
+
3 4 4 0 0 0
|
| 58 |
+
3 9 1 0 0 0
|
| 59 |
+
4 5 4 0 0 0
|
| 60 |
+
5 6 4 0 0 0
|
| 61 |
+
5 7 1 0 0 0
|
| 62 |
+
6 24 1 0 0 0
|
| 63 |
+
9 10 1 0 0 0
|
| 64 |
+
10 11 1 0 0 0
|
| 65 |
+
10 14 1 0 0 0
|
| 66 |
+
11 12 1 0 0 0
|
| 67 |
+
12 13 1 0 0 0
|
| 68 |
+
12 15 2 0 0 0
|
| 69 |
+
13 16 1 0 0 0
|
| 70 |
+
13 21 1 0 0 0
|
| 71 |
+
16 17 1 0 0 0
|
| 72 |
+
17 18 1 0 0 0
|
| 73 |
+
18 19 1 0 0 0
|
| 74 |
+
19 20 1 0 0 0
|
| 75 |
+
20 21 1 0 0 0
|
| 76 |
+
20 23 2 0 0 0
|
| 77 |
+
21 22 1 0 0 0
|
| 78 |
+
22 25 1 0 0 0
|
| 79 |
+
25 26 1 0 0 0
|
| 80 |
+
25 27 1 0 0 0
|
| 81 |
+
25 28 1 0 0 0
|
| 82 |
+
1 29 1 0 0 0
|
| 83 |
+
4 30 1 0 0 0
|
| 84 |
+
9 31 1 0 0 0
|
| 85 |
+
9 32 1 0 0 0
|
| 86 |
+
10 33 1 0 0 0
|
| 87 |
+
11 34 1 0 0 0
|
| 88 |
+
11 35 1 0 0 0
|
| 89 |
+
14 36 1 0 0 0
|
| 90 |
+
14 37 1 0 0 0
|
| 91 |
+
14 38 1 0 0 0
|
| 92 |
+
16 39 1 0 0 0
|
| 93 |
+
16 40 1 0 0 0
|
| 94 |
+
17 41 1 0 0 0
|
| 95 |
+
17 42 1 0 0 0
|
| 96 |
+
18 43 1 0 0 0
|
| 97 |
+
18 44 1 0 0 0
|
| 98 |
+
19 45 1 0 0 0
|
| 99 |
+
21 46 1 0 0 0
|
| 100 |
+
22 47 1 0 0 0
|
| 101 |
+
22 48 1 0 0 0
|
| 102 |
+
M END
|
| 103 |
+
$$$$
|
2iit/2iit_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2iit/2iit_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2oa0/2oa0_ligand.mol2
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:56 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2oa0_ligand
|
| 7 |
+
45 49 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O2 26.0510 -15.6970 15.5980 O.2 1 CZA -0.4174
|
| 14 |
+
2 C6 25.9830 -15.2990 14.3690 C.2 1 CZA 0.1190
|
| 15 |
+
3 C3 27.2210 -15.1870 13.5350 C.2 1 CZA 0.1016
|
| 16 |
+
4 C2 28.6450 -15.5200 13.8350 C.2 1 CZA 0.0873
|
| 17 |
+
5 O1 29.1390 -15.1890 14.9050 O.2 1 CZA -0.4204
|
| 18 |
+
6 C1 29.4160 -16.2470 12.7670 C.3 1 CZA -0.0020
|
| 19 |
+
7 C5 24.6980 -14.8340 13.7790 C.3 1 CZA 0.1219
|
| 20 |
+
8 C7 23.6280 -15.7310 13.1760 C.3 1 CZA 0.0213
|
| 21 |
+
9 C15 22.5440 -16.0370 14.1380 C.2 1 CZA -0.0409
|
| 22 |
+
10 C16 22.5630 -16.9440 15.1770 C.2 1 CZA 0.0139
|
| 23 |
+
11 N2 21.3140 -16.8270 15.7260 N.pl3 1 CZA -0.2922
|
| 24 |
+
12 C17 20.5720 -15.9020 15.0600 C.ar 1 CZA 0.0540
|
| 25 |
+
13 C14 21.3550 -15.3910 14.0340 C.ar 1 CZA -0.0169
|
| 26 |
+
14 C18 19.2740 -15.4100 15.2000 C.ar 1 CZA -0.0521
|
| 27 |
+
15 C19 18.8160 -14.4280 14.3120 C.ar 1 CZA -0.0846
|
| 28 |
+
16 C20 19.6330 -13.9330 13.2860 C.ar 1 CZA -0.0778
|
| 29 |
+
17 C13 20.9260 -14.4330 13.1510 C.ar 1 CZA -0.0528
|
| 30 |
+
18 C12 21.9050 -13.9840 12.0900 C.3 1 CZA -0.0160
|
| 31 |
+
19 C8 23.1420 -14.9010 11.9490 C.3 1 CZA 0.0070
|
| 32 |
+
20 C9 24.3380 -14.0470 11.5030 C.3 1 CZA 0.0667
|
| 33 |
+
21 C10 24.7620 -14.4110 10.0920 C.3 1 CZA -0.0368
|
| 34 |
+
22 C11 24.0610 -12.5540 11.5980 C.3 1 CZA -0.0368
|
| 35 |
+
23 N1 25.3400 -14.4770 12.4980 N.pl3 1 CZA -0.2287
|
| 36 |
+
24 C4 26.6480 -14.6620 12.2700 C.2 1 CZA 0.2164
|
| 37 |
+
25 O3 27.4240 -14.3620 11.0450 O.3 1 CZA -0.2761
|
| 38 |
+
26 H1 30.4434 -16.4285 13.1157 H 1 CZA 0.0433
|
| 39 |
+
27 H2 29.4417 -15.6357 11.8529 H 1 CZA 0.0433
|
| 40 |
+
28 H3 28.9267 -17.2084 12.5516 H 1 CZA 0.0433
|
| 41 |
+
29 H4 24.2455 -14.0305 14.3787 H 1 CZA 0.0805
|
| 42 |
+
30 H5 24.0697 -16.6809 12.8404 H 1 CZA 0.0438
|
| 43 |
+
31 H6 23.3772 -17.5974 15.4869 H 1 CZA 0.0766
|
| 44 |
+
32 H7 20.9804 -17.3681 16.5364 H 1 CZA 0.2206
|
| 45 |
+
33 H8 18.6277 -15.7830 15.9863 H 1 CZA 0.0475
|
| 46 |
+
34 H9 17.8086 -14.0428 14.4206 H 1 CZA 0.0512
|
| 47 |
+
35 H10 19.2639 -13.1723 12.6077 H 1 CZA 0.0436
|
| 48 |
+
36 H11 22.2518 -12.9718 12.3451 H 1 CZA 0.0428
|
| 49 |
+
37 H12 21.3806 -13.9592 11.1234 H 1 CZA 0.0428
|
| 50 |
+
38 H13 22.9023 -15.6224 11.1540 H 1 CZA 0.0369
|
| 51 |
+
39 H14 25.6183 -13.7880 9.7943 H 1 CZA 0.0256
|
| 52 |
+
40 H15 23.9241 -14.2369 9.4009 H 1 CZA 0.0256
|
| 53 |
+
41 H16 25.0510 -15.4718 10.0581 H 1 CZA 0.0256
|
| 54 |
+
42 H17 23.7549 -12.3025 12.6242 H 1 CZA 0.0256
|
| 55 |
+
43 H18 23.2554 -12.2853 10.8988 H 1 CZA 0.0256
|
| 56 |
+
44 H19 24.9724 -11.9948 11.3398 H 1 CZA 0.0256
|
| 57 |
+
45 H20 28.3333 -14.6013 11.1809 H 1 CZA 0.2725
|
| 58 |
+
@<TRIPOS>BOND
|
| 59 |
+
1 1 2 2
|
| 60 |
+
2 2 3 1
|
| 61 |
+
3 2 7 1
|
| 62 |
+
4 3 4 1
|
| 63 |
+
5 3 24 2
|
| 64 |
+
6 4 5 2
|
| 65 |
+
7 4 6 1
|
| 66 |
+
8 7 8 1
|
| 67 |
+
9 7 23 1
|
| 68 |
+
10 8 9 1
|
| 69 |
+
11 8 19 1
|
| 70 |
+
12 9 10 2
|
| 71 |
+
13 9 13 1
|
| 72 |
+
14 10 11 1
|
| 73 |
+
15 11 12 1
|
| 74 |
+
16 12 13 ar
|
| 75 |
+
17 12 14 ar
|
| 76 |
+
18 13 17 ar
|
| 77 |
+
19 14 15 ar
|
| 78 |
+
20 15 16 ar
|
| 79 |
+
21 16 17 ar
|
| 80 |
+
22 17 18 1
|
| 81 |
+
23 18 19 1
|
| 82 |
+
24 19 20 1
|
| 83 |
+
25 20 21 1
|
| 84 |
+
26 20 22 1
|
| 85 |
+
27 20 23 1
|
| 86 |
+
28 23 24 1
|
| 87 |
+
29 24 25 1
|
| 88 |
+
30 6 26 1
|
| 89 |
+
31 6 27 1
|
| 90 |
+
32 6 28 1
|
| 91 |
+
33 7 29 1
|
| 92 |
+
34 8 30 1
|
| 93 |
+
35 10 31 1
|
| 94 |
+
36 11 32 1
|
| 95 |
+
37 14 33 1
|
| 96 |
+
38 15 34 1
|
| 97 |
+
39 16 35 1
|
| 98 |
+
40 18 36 1
|
| 99 |
+
41 18 37 1
|
| 100 |
+
42 19 38 1
|
| 101 |
+
43 21 39 1
|
| 102 |
+
44 21 40 1
|
| 103 |
+
45 21 41 1
|
| 104 |
+
46 22 42 1
|
| 105 |
+
47 22 43 1
|
| 106 |
+
48 22 44 1
|
| 107 |
+
49 25 45 1
|
| 108 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 109 |
+
1 CZA 1
|
| 110 |
+
|
2oa0/2oa0_ligand.sdf
ADDED
|
@@ -0,0 +1,98 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2oa0_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
44 48 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
26.0510 -15.6970 15.5980 O 0 0 0 0 0
|
| 6 |
+
25.9830 -15.2990 14.3690 C 0 0 0 0 0
|
| 7 |
+
27.2210 -15.1870 13.5350 C 0 0 0 0 0
|
| 8 |
+
28.6450 -15.5200 13.8350 C 0 0 0 0 0
|
| 9 |
+
29.1390 -15.1890 14.9050 O 0 0 0 0 0
|
| 10 |
+
29.4160 -16.2470 12.7670 C 0 0 0 0 0
|
| 11 |
+
24.6980 -14.8340 13.7790 C 0 0 0 0 0
|
| 12 |
+
23.6280 -15.7310 13.1760 C 0 0 0 0 0
|
| 13 |
+
22.5440 -16.0370 14.1380 C 0 0 0 0 0
|
| 14 |
+
22.5630 -16.9440 15.1770 C 0 0 0 0 0
|
| 15 |
+
21.3140 -16.8270 15.7260 N 0 0 0 0 0
|
| 16 |
+
20.5720 -15.9020 15.0600 C 0 0 0 0 0
|
| 17 |
+
21.3550 -15.3910 14.0340 C 0 0 0 0 0
|
| 18 |
+
19.2740 -15.4100 15.2000 C 0 0 0 0 0
|
| 19 |
+
18.8160 -14.4280 14.3120 C 0 0 0 0 0
|
| 20 |
+
19.6330 -13.9330 13.2860 C 0 0 0 0 0
|
| 21 |
+
20.9260 -14.4330 13.1510 C 0 0 0 0 0
|
| 22 |
+
21.9050 -13.9840 12.0900 C 0 0 0 0 0
|
| 23 |
+
23.1420 -14.9010 11.9490 C 0 0 0 0 0
|
| 24 |
+
24.3380 -14.0470 11.5030 C 0 0 0 0 0
|
| 25 |
+
24.7620 -14.4110 10.0920 C 0 0 0 0 0
|
| 26 |
+
24.0610 -12.5540 11.5980 C 0 0 0 0 0
|
| 27 |
+
25.3400 -14.4770 12.4980 N 0 0 0 0 0
|
| 28 |
+
26.6480 -14.6620 12.2700 C 0 0 0 0 0
|
| 29 |
+
27.4240 -14.3620 11.0450 O 0 0 0 0 0
|
| 30 |
+
30.2643 -15.6379 12.4548 H 0 0 0 0 0
|
| 31 |
+
29.7752 -17.1969 13.1629 H 0 0 0 0 0
|
| 32 |
+
28.7651 -16.4310 11.9123 H 0 0 0 0 0
|
| 33 |
+
24.1762 -14.2544 14.5405 H 0 0 0 0 0
|
| 34 |
+
23.9948 -16.7187 12.8967 H 0 0 0 0 0
|
| 35 |
+
23.3780 -17.5980 15.4871 H 0 0 0 0 0
|
| 36 |
+
18.6242 -15.7851 15.9907 H 0 0 0 0 0
|
| 37 |
+
17.8030 -14.0407 14.4212 H 0 0 0 0 0
|
| 38 |
+
19.2619 -13.1681 12.6039 H 0 0 0 0 0
|
| 39 |
+
22.2652 -12.9966 12.3788 H 0 0 0 0 0
|
| 40 |
+
21.3787 -14.0013 11.1357 H 0 0 0 0 0
|
| 41 |
+
22.7902 -15.6478 11.2372 H 0 0 0 0 0
|
| 42 |
+
25.0480 -15.4623 10.0597 H 0 0 0 0 0
|
| 43 |
+
23.9309 -14.2381 9.4082 H 0 0 0 0 0
|
| 44 |
+
25.6105 -13.7931 9.7982 H 0 0 0 0 0
|
| 45 |
+
23.2135 -12.3017 10.9606 H 0 0 0 0 0
|
| 46 |
+
23.8306 -12.2935 12.6310 H 0 0 0 0 0
|
| 47 |
+
24.9412 -12.0009 11.2701 H 0 0 0 0 0
|
| 48 |
+
26.8314 -14.0350 10.3642 H 0 0 0 0 0
|
| 49 |
+
1 2 2 0 0 0
|
| 50 |
+
2 3 1 0 0 0
|
| 51 |
+
2 7 1 0 0 0
|
| 52 |
+
3 4 1 0 0 0
|
| 53 |
+
3 24 2 0 0 0
|
| 54 |
+
4 5 2 0 0 0
|
| 55 |
+
4 6 1 0 0 0
|
| 56 |
+
7 8 1 0 0 0
|
| 57 |
+
7 23 1 0 0 0
|
| 58 |
+
8 9 1 0 0 0
|
| 59 |
+
8 19 1 0 0 0
|
| 60 |
+
9 10 4 0 0 0
|
| 61 |
+
9 13 4 0 0 0
|
| 62 |
+
10 11 4 0 0 0
|
| 63 |
+
11 12 4 0 0 0
|
| 64 |
+
12 13 4 0 0 0
|
| 65 |
+
12 14 4 0 0 0
|
| 66 |
+
13 17 4 0 0 0
|
| 67 |
+
14 15 4 0 0 0
|
| 68 |
+
15 16 4 0 0 0
|
| 69 |
+
16 17 4 0 0 0
|
| 70 |
+
17 18 1 0 0 0
|
| 71 |
+
18 19 1 0 0 0
|
| 72 |
+
19 20 1 0 0 0
|
| 73 |
+
20 21 1 0 0 0
|
| 74 |
+
20 22 1 0 0 0
|
| 75 |
+
20 23 1 0 0 0
|
| 76 |
+
23 24 1 0 0 0
|
| 77 |
+
24 25 1 0 0 0
|
| 78 |
+
6 26 1 0 0 0
|
| 79 |
+
6 27 1 0 0 0
|
| 80 |
+
6 28 1 0 0 0
|
| 81 |
+
7 29 1 0 0 0
|
| 82 |
+
8 30 1 0 0 0
|
| 83 |
+
10 31 1 0 0 0
|
| 84 |
+
14 32 1 0 0 0
|
| 85 |
+
15 33 1 0 0 0
|
| 86 |
+
16 34 1 0 0 0
|
| 87 |
+
18 35 1 0 0 0
|
| 88 |
+
18 36 1 0 0 0
|
| 89 |
+
19 37 1 0 0 0
|
| 90 |
+
21 38 1 0 0 0
|
| 91 |
+
21 39 1 0 0 0
|
| 92 |
+
21 40 1 0 0 0
|
| 93 |
+
22 41 1 0 0 0
|
| 94 |
+
22 42 1 0 0 0
|
| 95 |
+
22 43 1 0 0 0
|
| 96 |
+
25 44 1 0 0 0
|
| 97 |
+
M END
|
| 98 |
+
$$$$
|
2oa0/2oa0_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2oa0/2oa0_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|