Datasets:

PDBbind_test / 6d08 /6d08_input_conf_2.sdf
linbc20's picture
Add batch 3
adfdd3e verified
6d08_ligand
RDKit 3D
146146 0 0 0 0 0 0 0 0999 V2000
-8.4626 5.0541 2.5404 N 0 0 0 0 0 4 0 0 0 0 0 0
-9.2450 3.9709 3.2367 C 0 0 2 0 0 0 0 0 0 0 0 0
-9.1577 2.6016 2.5303 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.9763 1.5723 3.1700 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.6965 4.4248 3.3559 C 0 0 0 0 0 0 0 0 0 0 0 0
-9.3211 2.5849 1.1597 N 0 0 0 0 0 0 0 0 0 0 0 0
-9.3784 1.3101 0.4193 C 0 0 2 0 0 0 0 0 0 0 0 0
-8.4579 1.3460 -0.8242 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.8202 0.9186 -1.9179 O 0 0 0 0 0 0 0 0 0 0 0 0
-10.8342 0.9573 0.0356 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.7095 0.4389 1.1856 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.3329 -0.9399 1.7441 C 0 0 0 0 0 0 0 0 0 0 0 0
-11.3867 -2.1131 0.7640 C 0 0 0 0 0 0 0 0 0 0 0 0
-12.7670 -2.3345 0.2737 N 0 0 0 0 0 4 0 0 0 0 0 0
-7.1652 1.7521 -0.5725 N 0 0 0 0 0 0 0 0 0 0 0 0
-6.0769 1.3810 -1.4974 C 0 0 2 0 0 0 0 0 0 0 0 0
-4.9568 0.7686 -0.6230 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.9217 0.9377 0.5922 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.5863 2.5803 -2.3186 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.9236 2.4546 -3.8108 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.1615 1.3332 -4.4957 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.4278 0.5493 -3.9011 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.3544 1.2420 -5.8367 N 0 0 0 0 0 0 0 0 0 0 0 0
-4.0331 0.0225 -1.3104 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.2836 -1.0557 -0.6435 C 0 0 2 0 0 0 0 0 0 0 0 0
-1.9048 -0.5619 -0.1710 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.3024 -1.0928 0.7582 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.1020 -2.2314 -1.6285 C 0 0 2 0 0 0 0 0 0 0 0 0
-4.3538 -2.4774 -2.2930 O 0 0 0 0 0 0 0 0 0 0 0 0
-2.6866 -3.5324 -0.9496 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.3081 0.3812 -0.9917 N 0 0 0 0 0 0 0 0 0 0 0 0
-0.1223 1.1321 -0.5487 C 0 0 2 0 0 0 0 0 0 0 0 0
1.1360 0.2541 -0.3227 C 0 0 0 0 0 0 0 0 0 0 0 0
2.0609 0.5649 0.4240 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.4192 2.0014 0.6707 C 0 0 0 0 0 0 0 0 0 0 0 0
1.2201 -0.8320 -1.1715 N 0 0 0 0 0 0 0 0 0 0 0 0
2.1040 -1.9657 -0.8660 C 0 0 2 0 0 0 0 0 0 0 0 0
3.5500 -1.7234 -1.3822 C 0 0 0 0 0 0 0 0 0 0 0 0
4.1477 -2.5325 -2.0947 O 0 0 0 0 0 0 0 0 0 0 0 0
1.4958 -3.2693 -1.4297 C 0 0 0 0 0 0 0 0 0 0 0 0
1.8823 -4.5532 -0.6645 C 0 0 0 0 0 0 0 0 0 0 0 0
2.8937 -5.4328 -1.3904 C 0 0 0 0 0 0 0 0 0 0 0 0
4.2443 -4.8839 -1.3117 N 0 0 0 0 0 0 0 0 0 0 0 0
5.1279 -5.0296 -0.3186 C 0 0 0 0 0 0 0 0 0 0 0 0
4.8380 -5.7009 0.7968 N 0 0 0 0 0 4 0 0 0 0 0 0
6.3284 -4.4792 -0.4322 N 0 0 0 0 0 0 0 0 0 0 0 0
4.1857 -0.6206 -0.8398 N 0 0 0 0 0 0 0 0 0 0 0 0
5.6365 -0.6563 -0.6939 C 0 0 2 0 0 0 0 0 0 0 0 0
5.9674 -1.4982 0.5699 C 0 0 0 0 0 0 0 0 0 0 0 0
5.1037 -1.9625 1.3171 O 0 0 0 0 0 0 0 0 0 0 0 0
6.2774 0.7434 -0.6602 C 0 0 0 0 0 0 0 0 0 0 0 0
6.0141 1.5718 0.6062 C 0 0 0 0 0 0 0 0 0 0 0 0
7.0311 2.7081 0.8196 C 0 0 0 0 0 0 0 0 0 0 0 0
8.4213 2.1773 1.1825 C 0 0 0 0 0 0 0 0 0 0 0 0
9.3397 3.3027 1.5296 N 0 0 0 0 0 4 0 0 0 0 0 0
10.7638 2.8500 1.7273 C 0 0 0 0 0 0 0 0 0 0 0 0
11.5008 2.6894 0.4226 C 0 0 0 0 0 0 0 0 0 0 0 0
11.8670 3.8059 -0.3484 C 0 0 0 0 0 0 0 0 0 0 0 0
12.5204 3.6351 -1.5713 C 0 0 0 0 0 0 0 0 0 0 0 0
12.8175 2.3561 -2.0377 C 0 0 0 0 0 0 0 0 0 0 0 0
12.4703 1.2457 -1.2734 C 0 0 0 0 0 0 0 0 0 0 0 0
11.8218 1.4109 -0.0502 C 0 0 0 0 0 0 0 0 0 0 0 0
7.2991 -1.7265 0.7781 N 0 0 0 0 0 0 0 0 0 0 0 0
7.8320 -1.9528 2.1455 C 0 0 2 0 0 0 0 0 0 0 0 0
9.1235 -1.1331 2.3565 C 0 0 0 0 0 0 0 0 0 0 0 0
9.6333 -1.1220 3.5020 O 0 0 0 0 0 1 0 0 0 0 0 0
8.0980 -3.4244 2.4247 C 0 0 0 0 0 0 0 0 0 0 0 0
6.9151 -4.2032 2.1412 O 0 0 0 0 0 0 0 0 0 0 0 0
9.4585 -0.4674 1.3189 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.9291 5.4140 1.6970 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.5210 4.7207 2.2793 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.3237 5.8520 3.1748 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.7838 3.8767 4.2253 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.2573 3.7097 3.9754 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.7651 5.4123 3.8251 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.1836 4.4694 2.3785 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.6237 3.4009 0.6431 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.9689 0.5114 1.0471 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.8493 0.2155 -0.7688 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.3115 1.8533 -0.3807 H 0 0 0 0 0 0 0 0 0 0 0 0
-12.7480 0.4098 0.8368 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.6959 1.1650 2.0076 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.3242 -0.8956 2.1711 H 0 0 0 0 0 0 0 0 0 0 0 0
-12.0034 -1.1580 2.5871 H 0 0 0 0 0 0 0 0 0 0 0 0
-11.0834 -3.0383 1.2607 H 0 0 0 0 0 0 0 0 0 0 0 0
-10.7526 -1.9568 -0.1116 H 0 0 0 0 0 0 0 0 0 0 0 0
-12.8048 -3.1475 -0.3569 H 0 0 0 0 0 0 0 0 0 0 0 0
-13.4208 -2.5339 1.0431 H 0 0 0 0 0 0 0 0 0 0 0 0
-13.1387 -1.5365 -0.2560 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8735 1.7548 0.4046 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.4441 0.5753 -2.1448 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.0526 3.5025 -1.9493 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.5015 2.7141 -2.2063 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.9968 2.2791 -3.9458 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6674 3.3925 -4.3178 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.9403 0.4599 -6.3307 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.0264 1.8001 -6.3476 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2210 -0.1451 -2.3092 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.8628 -1.3731 0.2331 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.3684 -1.9658 -2.4028 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.1701 -3.0512 -3.0638 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.4570 -3.8772 -0.2555 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.5638 -4.3187 -1.6989 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.7457 -3.4288 -0.4032 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.9664 0.8887 -1.5780 H 0 0 0 0 0 0 0 0 0 0 0 0
0.1231 1.7973 -1.3870 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.6464 1.3983 1.5553 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4388 2.6360 0.9206 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.2794 2.6565 0.4849 H 0 0 0 0 0 0 0 0 0 0 0 0
0.3576 -1.0377 -1.6576 H 0 0 0 0 0 0 0 0 0 0 0 0
2.1620 -2.0436 0.2256 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4020 -3.1883 -1.3505 H 0 0 0 0 0 0 0 0 0 0 0 0
1.7013 -3.3688 -2.5039 H 0 0 0 0 0 0 0 0 0 0 0 0
0.9711 -5.1541 -0.5511 H 0 0 0 0 0 0 0 0 0 0 0 0
2.2340 -4.3151 0.3435 H 0 0 0 0 0 0 0 0 0 0 0 0
2.9003 -6.4537 -0.9910 H 0 0 0 0 0 0 0 0 0 0 0 0
2.6442 -5.5213 -2.4546 H 0 0 0 0 0 0 0 0 0 0 0 0
4.5097 -4.2010 -2.0269 H 0 0 0 0 0 0 0 0 0 0 0 0
5.5346 -5.7205 1.5399 H 0 0 0 0 0 0 0 0 0 0 0 0
3.9489 -6.1488 0.9481 H 0 0 0 0 0 0 0 0 0 0 0 0
6.6511 -4.0011 -1.2620 H 0 0 0 0 0 0 0 0 0 0 0 0
6.9101 -4.4106 0.4116 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6594 -0.1434 -0.1030 H 0 0 0 0 0 0 0 0 0 0 0 0
6.0539 -1.2003 -1.5479 H 0 0 0 0 0 0 0 0 0 0 0 0
7.3560 0.6125 -0.7945 H 0 0 0 0 0 0 0 0 0 0 0 0
5.9363 1.3186 -1.5283 H 0 0 0 0 0 0 0 0 0 0 0 0
6.0193 0.9341 1.4992 H 0 0 0 0 0 0 0 0 0 0 0 0
5.0076 2.0025 0.5398 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0879 3.3334 -0.0811 H 0 0 0 0 0 0 0 0 0 0 0 0
6.6661 3.3497 1.6299 H 0 0 0 0 0 0 0 0 0 0 0 0
8.8621 1.6572 0.3306 H 0 0 0 0 0 0 0 0 0 0 0 0
8.3635 1.5475 2.0723 H 0 0 0 0 0 0 0 0 0 0 0 0
9.3265 4.0181 0.7983 H 0 0 0 0 0 0 0 0 0 0 0 0
9.0211 3.7329 2.4049 H 0 0 0 0 0 0 0 0 0 0 0 0
11.2450 3.6316 2.3258 H 0 0 0 0 0 0 0 0 0 0 0 0
10.7494 1.9373 2.3296 H 0 0 0 0 0 0 0 0 0 0 0 0
11.6674 4.8168 -0.0045 H 0 0 0 0 0 0 0 0 0 0 0 0
12.8115 4.5029 -2.1639 H 0 0 0 0 0 0 0 0 0 0 0 0
13.3330 2.2237 -2.9863 H 0 0 0 0 0 0 0 0 0 0 0 0
12.7151 0.2441 -1.6231 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5703 0.5224 0.5315 H 0 0 0 0 0 0 0 0 0 0 0 0
7.9912 -1.1997 0.2403 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0818 -1.5785 2.8554 H 0 0 0 0 0 0 0 0 0 0 0 0
8.3665 -3.5966 3.4734 H 0 0 0 0 0 0 0 0 0 0 0 0
8.9074 -3.8157 1.7942 H 0 0 0 0 0 0 0 0 0 0 0 0
6.1898 -3.6739 2.5330 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0
2 3 1 0
2 5 1 0
3 4 2 0
3 6 1 0
6 7 1 0
7 8 1 0
7 10 1 0
8 9 2 0
8 15 1 0
10 11 1 0
11 12 1 0
12 13 1 0
13 14 1 0
15 16 1 0
16 17 1 0
16 19 1 0
17 18 2 0
17 24 1 0
19 20 1 0
20 21 1 0
21 22 2 0
21 23 1 0
24 25 1 0
25 26 1 0
25 28 1 0
26 27 2 0
26 31 1 0
28 29 1 0
28 30 1 0
31 32 1 0
32 33 1 0
32 35 1 0
33 34 2 0
33 36 1 0
36 37 1 0
37 38 1 0
37 40 1 0
38 39 2 0
38 47 1 0
40 41 1 0
41 42 1 0
42 43 1 0
43 44 1 0
44 45 2 0
44 46 1 0
47 48 1 0
48 49 1 0
48 51 1 0
49 50 2 0
49 63 1 0
51 52 1 0
52 53 1 0
53 54 1 0
54 55 1 0
55 56 1 0
56 57 1 0
57 58 2 0
57 62 1 0
58 59 1 0
59 60 2 0
60 61 1 0
61 62 2 0
63 64 1 0
64 65 1 0
64 67 1 0
65 66 1 0
65 69 2 0
67 68 1 0
1 70 1 0
1 71 1 0
1 72 1 0
2 73 1 1
5 74 1 0
5 75 1 0
5 76 1 0
6 77 1 0
7 78 1 1
10 79 1 0
10 80 1 0
11 81 1 0
11 82 1 0
12 83 1 0
12 84 1 0
13 85 1 0
13 86 1 0
14 87 1 0
14 88 1 0
14 89 1 0
15 90 1 0
16 91 1 6
19 92 1 0
19 93 1 0
20 94 1 0
20 95 1 0
23 96 1 0
23 97 1 0
24 98 1 0
25 99 1 1
28100 1 6
29101 1 0
30102 1 0
30103 1 0
30104 1 0
31105 1 0
32106 1 6
35107 1 0
35108 1 0
35109 1 0
36110 1 0
37111 1 1
40112 1 0
40113 1 0
41114 1 0
41115 1 0
42116 1 0
42117 1 0
43118 1 0
45119 1 0
45120 1 0
46121 1 0
46122 1 0
47123 1 0
48124 1 6
51125 1 0
51126 1 0
52127 1 0
52128 1 0
53129 1 0
53130 1 0
54131 1 0
54132 1 0
55133 1 0
55134 1 0
56135 1 0
56136 1 0
58137 1 0
59138 1 0
60139 1 0
61140 1 0
62141 1 0
63142 1 0
64143 1 1
67144 1 0
67145 1 0
68146 1 0
M CHG 5 1 1 14 1 45 1 55 1 66 -1
M END
> <_TriposChargeType> (1)
GAST_HUCK
$$$$