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TabBioMed camera-ready release

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  1. README.md +72 -0
  2. data/test.parquet +3 -0
  3. data/train.parquet +3 -0
  4. data/val.parquet +3 -0
  5. feature_names.json +36 -0
  6. metadata.json +32 -0
README.md ADDED
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+ ---
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+ license: odc-by
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+ pretty_name: IACCD
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+ task_categories:
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+ - tabular-classification
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+ tags:
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+ - tabular
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+ - biomedical
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+ - benchmark
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+ - TabBioMed
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+ - clinical-&-healthcare
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+ - binary
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+ size_categories:
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+ - 1K<n<10K
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: train
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+ path: data/train.parquet
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+ - split: validation
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+ path: data/val.parquet
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+ - split: test
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+ path: data/test.parquet
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+ ---
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+
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+ # IACCD
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+
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+ Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical
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+ tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed.
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+
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+ Indwelling Arterial Catheter Clinical Dataset (IACCD) for 28-day mortality prediction. TabBioMed uses the separately released PhysioNet mimic2-iaccd dataset, available without credentialed access under the Open Data Commons Attribution License v1.0; it does not directly access the credentialed MIMIC-II database. The whole-stay blood-gas test count (abg_count) is excluded from predictors.
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+
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+ | Domain | Task | Samples | Features | Classes |
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+ |---|---|---|---|---|
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+ | Clinical & Healthcare | binary | 1,776 | 34 | 2 |
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+
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+ **Splits.** Fixed train/val/test split (1243/266/267 rows).
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+
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+ ## Files
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+
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+ - `data/**.parquet`: one row per sample. `row_idx` is the row index in the original
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+ TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>`
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+ for multi-target tasks) is the label. Categorical feature indices (0-based, among the
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+ features): `[0, 2, 9, 10, 11, 12, 13, 14, 15, 16, 17, 7, 8]`. Missing values are stored as nulls.
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+ - `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description).
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+ - `feature_names.json`: original feature names, in column order.
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+
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+ ```python
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+ from datasets import load_dataset
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+ ds = load_dataset("TabBioMed/IACCD")
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+ ```
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+
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+ A Croissant (1.1) description with Responsible-AI fields is distributed with the
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+ TabBioMed release.
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+
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+ ## Source and license
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+
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+ Source: PhysioNet mimic2-iaccd v1.0
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+
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+ This derived dataset is distributed under ODC-By 1.0 (https://opendatacommons.org/licenses/by/1-0/). Please also
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+ cite and respect the terms of the original source.
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @inproceedings{tabbiomed2026,
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+ title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning},
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+ author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.},
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+ booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track},
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+ year = {2026}
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+ }
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+ ```
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feature_names.json ADDED
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+ [
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+ "aline_flg",
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+ "age",
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+ "gender_num",
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+ "weight_first",
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+ "bmi",
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+ "sapsi_first",
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+ "sofa_first",
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+ "service_unit",
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+ "day_icu_intime",
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+ "chf_flg",
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+ "afib_flg",
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+ "renal_flg",
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+ "liver_flg",
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+ "copd_flg",
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+ "cad_flg",
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+ "stroke_flg",
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+ "mal_flg",
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+ "resp_flg",
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+ "map_1st",
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+ "hr_1st",
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+ "temp_1st",
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+ "spo2_1st",
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+ "wbc_first",
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+ "hgb_first",
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+ "platelet_first",
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+ "sodium_first",
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+ "potassium_first",
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+ "tco2_first",
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+ "chloride_first",
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+ "bun_first",
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+ "creatinine_first",
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+ "po2_first",
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+ "pco2_first",
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+ "iv_day_1"
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+ ]
metadata.json ADDED
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+ {
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+ "READY": true,
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+ "name": "IACCD",
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+ "task": "binary",
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+ "num_classes": 2,
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+ "cat_idx": [
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+ 0,
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+ 2,
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+ 9,
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+ 10,
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+ 11,
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+ 12,
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+ 13,
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+ 14,
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+ 15,
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+ 16,
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+ 17,
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+ 7,
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+ 8
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+ ],
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+ "num_samples": 1776,
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+ "num_features": 34,
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+ "imbalance_ratio": 5.2756,
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+ "description": "Indwelling Arterial Catheter Clinical Dataset (IACCD) for 28-day mortality prediction. TabBioMed uses the separately released PhysioNet mimic2-iaccd dataset, available without credentialed access under the Open Data Commons Attribution License v1.0; it does not directly access the credentialed MIMIC-II database. The whole-stay blood-gas test count (abg_count) is excluded from predictors.",
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+ "source": "PhysioNet mimic2-iaccd v1.0",
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+ "label": "clinical & healthcare",
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+ "source_url": "https://physionet.org/content/mimic2-iaccd/1.0/",
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+ "license": "ODC-By-1.0",
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+ "license_url": "https://opendatacommons.org/licenses/by/1-0/",
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+ "access_policy": "Open access; no credentials required",
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+ "curation_protocol": "iaccd_no_abg_v1"
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+ }