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TabBioMed camera-ready release

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  1. README.md +72 -0
  2. data/test.parquet +3 -0
  3. data/train.parquet +3 -0
  4. data/val.parquet +3 -0
  5. feature_names.json +67 -0
  6. metadata.json +43 -0
README.md ADDED
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+ ---
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+ license: cc-by-4.0
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+ pretty_name: MUSIC
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+ task_categories:
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+ - tabular-classification
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+ tags:
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+ - tabular
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+ - biomedical
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+ - benchmark
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+ - TabBioMed
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+ - clinical-&-healthcare
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+ - classification
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+ size_categories:
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+ - n<1K
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: train
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+ path: data/train.parquet
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+ - split: validation
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+ path: data/val.parquet
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+ - split: test
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+ path: data/test.parquet
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+ ---
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+
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+ # MUSIC
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+
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+ Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical
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+ tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed.
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+
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+ MUSIC cause-of-death classification. Eleven patients lost to follow-up (exit code 1) and twenty heart-transplant patients (exit code 2) are excluded because no cause of death was observed. Class 0 is alive at the end of follow-up. Cause codes 1, 3, and 6/7 map to classes 1, 2, and 3.
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+
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+ | Domain | Task | Samples | Features | Classes |
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+ |---|---|---|---|---|
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+ | Clinical & Healthcare | classification | 961 | 65 | 4 |
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+
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+ **Splits.** Fixed train/val/test split (672/144/145 rows).
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+
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+ ## Files
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+
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+ - `data/**.parquet`: one row per sample. `row_idx` is the row index in the original
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+ TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>`
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+ for multi-target tasks) is the label. Categorical feature indices (0-based, among the
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+ features): `[1, 8, 9, 10, 11, 12, 40, 43, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 7, 13, 14, 15, 46, 47]`. Missing values are stored as nulls.
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+ - `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description).
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+ - `feature_names.json`: original feature names, in column order.
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+
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+ ```python
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+ from datasets import load_dataset
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+ ds = load_dataset("TabBioMed/MUSIC")
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+ ```
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+
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+ A Croissant (1.1) description with Responsible-AI fields is distributed with the
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+ TabBioMed release.
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+
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+ ## Source and license
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+
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+ Source: MUSIC
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+
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+ This derived dataset is distributed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Please also
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+ cite and respect the terms of the original source.
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @inproceedings{tabbiomed2026,
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+ title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning},
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+ author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.},
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+ booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track},
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+ year = {2026}
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+ }
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+ ```
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feature_names.json ADDED
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+ [
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+ "Age",
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+ "Gender (male=1)",
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+ "Weight (kg)",
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+ "Height (cm)",
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+ "NYHA class",
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+ "Diastolic blood pressure (mmHg)",
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+ "Systolic blood pressure (mmHg)",
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+ "HF etiology - Diagnosis",
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+ "Diabetes (yes=1)",
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+ "History of dyslipemia (yes=1)",
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+ "Peripheral vascular disease (yes=1)",
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+ "History of hypertension (yes=1)",
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+ "Prior Myocardial Infarction (yes=1)",
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+ "Prior implantable device",
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+ "Prior Revascularization",
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+ "Syncope",
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+ "daily smoking (cigarretes/day)",
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+ "smoke-free time (years)",
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+ "cigarettes /year",
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+ "alcohol consumption (standard units)",
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+ "Albumin (g/L)",
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+ "ALT or GPT (IU/L)",
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+ "AST or GOT (IU/L)",
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+ "Normalized Troponin",
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+ "Total Cholesterol (mmol/L)",
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+ "Creatinine (?mol/L)",
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+ "Gamma-glutamil transpeptidase (IU/L)",
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+ "Glucose (mmol/L)",
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+ "Hemoglobin (g/L)",
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+ "HDL (mmol/L)",
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+ "Potassium (mEq/L)",
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+ "LDL (mmol/L)",
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+ "Sodium (mEq/L)",
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+ "Pro-BNP (ng/L)",
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+ "Protein (g/L)",
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+ "T3 (pg/dL)",
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+ "T4 (ng/L)",
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+ "Troponin (ng/mL)",
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+ "TSH (mIU/L)",
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+ "Urea (mg/dL)",
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+ "Signs of pulmonary venous hypertension (yes=1)",
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+ "Cardiothoracic ratio",
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+ "Left atrial size (mm)",
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+ "Right ventricle contractility (altered=1)",
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+ "Right ventricle end-diastolic diameter (mm)",
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+ "LVEF (%)",
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+ "Mitral valve insufficiency",
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+ "Mitral flow pattern",
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+ "Left ventricular posterior wall thickness (mm)",
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+ "Septal thickness (mm)",
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+ "Left ventricle end-diastolic diameter (mm)",
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+ "Left ventricle end-systolic diameter (mm)",
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+ "Calcium channel blocker (yes=1)",
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+ "Diabetes medication (yes=1)",
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+ "Amiodarone (yes=1)",
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+ "Angiotensin-II receptor blocker (yes=1)",
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+ "Anticoagulants/antitrombotics (yes=1)",
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+ "Betablockers (yes=1)",
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+ "Digoxin (yes=1)",
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+ "Loop diuretics (yes=1)",
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+ "Spironolactone (yes=1)",
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+ "Statins (yes=1)",
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+ "Hidralazina (yes=1)",
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+ "ACE inhibitor (yes=1)",
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+ "Nitrovasodilator (yes=1)"
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+ ]
metadata.json ADDED
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+ {
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+ "READY": true,
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+ "name": "MUSIC",
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+ "task": "classification",
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+ "num_classes": 4,
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+ "cat_idx": [
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+ 1,
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+ 8,
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+ 9,
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+ 10,
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+ 11,
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+ 12,
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+ 40,
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+ 43,
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+ 52,
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+ 53,
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+ 54,
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+ 55,
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+ 56,
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+ 57,
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+ 58,
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+ 59,
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+ 60,
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+ 61,
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+ 62,
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+ 63,
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+ 64,
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+ 7,
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+ 13,
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+ 14,
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+ 15,
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+ 46,
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+ 47
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+ ],
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+ "num_samples": 961,
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+ "num_features": 65,
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+ "imbalance_ratio": 11.3934,
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+ "description": "MUSIC cause-of-death classification. Eleven patients lost to follow-up (exit code 1) and twenty heart-transplant patients (exit code 2) are excluded because no cause of death was observed. Class 0 is alive at the end of follow-up. Cause codes 1, 3, and 6/7 map to classes 1, 2, and 3.",
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+ "source": "MUSIC",
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+ "note": "Excluded exit code 1 (lost to follow-up, n=11) and exit code 2 (heart transplant, n=20). Follow-up length and the exit code are not features.",
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+ "label": "clinical & healthcare",
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+ "curation_protocol": "music_resolved_outcomes_v1"
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+ }